Your job contains 1 sequence.
>025523
MATPPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTC
NNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLD
GSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETI
DLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPI
IDQGPAKRMKI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025523
(251 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089488 - symbol:MED6 species:3702 "Arabidopsi... 572 2.3e-64 2
DICTYBASE|DDB_G0284421 - symbol:med6 "putative mediator c... 313 5.0e-28 1
RGD|1310296 - symbol:Med6 "mediator complex subunit 6" sp... 282 9.7e-25 1
UNIPROTKB|E2R2L6 - symbol:MED6 "Mediator of RNA polymeras... 281 1.2e-24 1
UNIPROTKB|G3V4A5 - symbol:MED6 "Mediator of RNA polymeras... 281 1.2e-24 1
UNIPROTKB|O75586 - symbol:MED6 "Mediator of RNA polymeras... 281 1.2e-24 1
MGI|MGI:1917042 - symbol:Med6 "mediator of RNA polymerase... 281 1.2e-24 1
UNIPROTKB|Q3SZY9 - symbol:MED6 "Mediator of RNA polymeras... 278 2.6e-24 1
UNIPROTKB|E1BZ92 - symbol:MED6 "Mediator of RNA polymeras... 277 3.3e-24 1
UNIPROTKB|H9KYN6 - symbol:H9KYN6 "Uncharacterized protein... 277 3.3e-24 1
UNIPROTKB|F1S496 - symbol:MED6 "Mediator of RNA polymeras... 277 3.3e-24 1
UNIPROTKB|B4E2P0 - symbol:MED6 "cDNA FLJ59149, highly sim... 269 2.3e-23 1
UNIPROTKB|B4DU17 - symbol:MED6 "Mediator of RNA polymeras... 264 7.8e-23 1
ZFIN|ZDB-GENE-040625-61 - symbol:med6 "mediator complex s... 263 1.0e-22 1
FB|FBgn0024330 - symbol:MED6 "Mediator complex subunit 6"... 244 1.0e-20 1
CGD|CAL0005486 - symbol:orf19.7420 species:5476 "Candida ... 210 4.1e-17 1
POMBASE|SPAC1002.15c - symbol:pmc5 "mediator complex subu... 199 6.0e-16 1
WB|WBGene00003164 - symbol:mdt-6 species:6239 "Caenorhabd... 188 8.8e-15 1
UNIPROTKB|Q9N337 - symbol:mdt-6 "Mediator of RNA polymera... 188 8.8e-15 1
SGD|S000001100 - symbol:MED6 "Subunit of the RNA polymera... 127 1.9e-06 1
>TAIR|locus:2089488 [details] [associations]
symbol:MED6 species:3702 "Arabidopsis thaliana"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
InterPro:IPR007018 InterPro:IPR016820 Pfam:PF04934
PIRSF:PIRSF023869 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AP001305 GO:GO:0016592 GO:GO:0001104 EMBL:AY070104
EMBL:AY091238 IPI:IPI00539385 IPI:IPI00938751 RefSeq:NP_001154633.1
RefSeq:NP_188772.2 UniGene:At.8297 IntAct:F4IXJ7 PRIDE:F4IXJ7
EnsemblPlants:AT3G21350.2 GeneID:821689 KEGG:ath:AT3G21350
TAIR:At3g21350 eggNOG:COG5097 HOGENOM:HOG000035127
InParanoid:Q9LIG1 KO:K15128 OMA:GICFRDQ ProtClustDB:CLSN2690559
PANTHER:PTHR13104 Uniprot:F4IXJ7
Length = 298
Score = 572 (206.4 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 106/136 (77%), Positives = 119/136 (87%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMT 82
TDMTGI FRDQLW+N+YPLDRN IFDYF LS FYD TCNNE LR RSIHPLD+S LSKMT
Sbjct: 31 TDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLSKMT 90
Query: 83 GIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 142
G+EYML++ EP+LFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ R ++
Sbjct: 91 GLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRTIY 150
Query: 143 YIQKAFTTAASKLEKI 158
I KAFT AASKLE I
Sbjct: 151 NISKAFTDAASKLETI 166
Score = 102 (41.0 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 23/38 (60%), Positives = 25/38 (65%)
Query: 162 DAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
D EN P SK ET+DLKE+KRVD IL SL RKL
Sbjct: 211 DTENQN-EPAESKPASETVDLKEMKRVDVILTSLYRKL 247
>DICTYBASE|DDB_G0284421 [details] [associations]
symbol:med6 "putative mediator complex subunit 6"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=IEA;ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IC] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007018 Pfam:PF04934 dictyBase:DDB_G0284421
GenomeReviews:CM000153_GR GO:GO:0006367 EMBL:AAFI02000064
GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 RefSeq:XP_638621.1 EnsemblProtists:DDB0266854
GeneID:8624592 KEGG:ddi:DDB_G0284421 OMA:YVINGNI Uniprot:Q54PN3
Length = 267
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 70/176 (39%), Positives = 105/176 (59%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G
Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 121
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ +
Sbjct: 122 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 181
Query: 144 IQKAFTTAASKLE-KI--GYVDAENDGGTPLHSK-AGKETIDLKEVKRVDQILASL 195
+ +AF + +S + I GY + SK A +++ KR+DQ++ SL
Sbjct: 182 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSL 237
>RGD|1310296 [details] [associations]
symbol:Med6 "mediator complex subunit 6" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003713 "transcription coactivator activity" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0008134 "transcription
factor binding" evidence=IEA;ISO] [GO:0016592 "mediator complex"
evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO]
InterPro:IPR007018 InterPro:IPR016820 Pfam:PF04934
PIRSF:PIRSF023869 RGD:1310296 GO:GO:0003677 GO:GO:0045944
GO:GO:0003713 EMBL:CH473982 GO:GO:0016592 GO:GO:0001104
eggNOG:COG5097 HOGENOM:HOG000035127 KO:K15128 PANTHER:PTHR13104
CTD:10001 GeneTree:ENSGT00390000017666 HOVERGEN:HBG006825
OrthoDB:EOG44MXSS EMBL:BC158786 IPI:IPI00365871
RefSeq:NP_001100212.1 UniGene:Rn.97814 STRING:B0BNE1
Ensembl:ENSRNOT00000009483 GeneID:299180 KEGG:rno:299180
UCSC:RGD:1310296 NextBio:644929 Genevestigator:B0BNE1
Uniprot:B0BNE1
Length = 246
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|E2R2L6 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9615 "Canis lupus familiaris" [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA]
InterPro:IPR007018 InterPro:IPR016820 Pfam:PF04934
PIRSF:PIRSF023869 GO:GO:0003677 GO:GO:0045944 GO:GO:0003713
GO:GO:0016592 GO:GO:0001104 KO:K15128 PANTHER:PTHR13104 CTD:10001
GeneTree:ENSGT00390000017666 OMA:RVDMLLA EMBL:AAEX03005819
EMBL:AAEX03005820 RefSeq:XP_547885.2 Ensembl:ENSCAFT00000026406
GeneID:490763 KEGG:cfa:490763 NextBio:20863719 Uniprot:E2R2L6
Length = 246
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 68/184 (36%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|G3V4A5 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 EMBL:AL357153
GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR13104 HGNC:HGNC:19970
ProteinModelPortal:G3V4A5 SMR:G3V4A5 Ensembl:ENST00000554963
ArrayExpress:G3V4A5 Bgee:G3V4A5 Uniprot:G3V4A5
Length = 249
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|O75586 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0016592 "mediator complex" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 EMBL:AF074723
Reactome:REACT_111045 GO:GO:0003677 GO:GO:0045944 GO:GO:0003713
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 CTD:10001 HOVERGEN:HBG006825 OrthoDB:EOG44MXSS
EMBL:BT006831 EMBL:CR541697 EMBL:AK222587 EMBL:AK223346
EMBL:BC004106 EMBL:U78082 EMBL:AF155104 IPI:IPI00942495
RefSeq:NP_005457.2 UniGene:Hs.497353 ProteinModelPortal:O75586
SMR:O75586 DIP:DIP-31456N IntAct:O75586 MINT:MINT-244143
STRING:O75586 PhosphoSite:O75586 PaxDb:O75586 PeptideAtlas:O75586
PRIDE:O75586 DNASU:10001 Ensembl:ENST00000256379 GeneID:10001
KEGG:hsa:10001 UCSC:uc001xmf.3 GeneCards:GC14M071050
HGNC:HGNC:19970 MIM:602984 neXtProt:NX_O75586 PharmGKB:PA134868263
InParanoid:O75586 PhylomeDB:O75586 GenomeRNAi:10001 NextBio:37771
ArrayExpress:O75586 Bgee:O75586 CleanEx:HS_MED6
Genevestigator:O75586 GermOnline:ENSG00000133997 Uniprot:O75586
Length = 246
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>MGI|MGI:1917042 [details] [associations]
symbol:Med6 "mediator of RNA polymerase II transcription,
subunit 6 homolog (yeast)" species:10090 "Mus musculus" [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0016592 "mediator complex" evidence=ISO;IDA]
[GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR007018 InterPro:IPR016820
Pfam:PF04934 PIRSF:PIRSF023869 MGI:MGI:1917042 GO:GO:0003677
GO:GO:0045944 Reactome:REACT_127416 GO:GO:0003713 GO:GO:0019827
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097
HOGENOM:HOG000035127 KO:K15128 PANTHER:PTHR13104 CTD:10001
GeneTree:ENSGT00390000017666 HOVERGEN:HBG006825 OMA:RVDMLLA
EMBL:AK089101 EMBL:AK171784 EMBL:BC013096 IPI:IPI00177199
RefSeq:NP_081489.2 UniGene:Mm.279993 ProteinModelPortal:Q921D4
SMR:Q921D4 IntAct:Q921D4 MINT:MINT-217697 STRING:Q921D4
PhosphoSite:Q921D4 PRIDE:Q921D4 DNASU:69792
Ensembl:ENSMUST00000002756 Ensembl:ENSMUST00000161211 GeneID:69792
KEGG:mmu:69792 UCSC:uc007ocl.1 InParanoid:Q921D4 ChiTaRS:MED6
NextBio:330356 Bgee:Q921D4 Genevestigator:Q921D4 Uniprot:Q921D4
Length = 246
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|Q3SZY9 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9913 "Bos taurus" [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 GO:GO:0003677
GO:GO:0045944 GO:GO:0003713 GO:GO:0016592 GO:GO:0001104
eggNOG:COG5097 HOGENOM:HOG000035127 KO:K15128 PANTHER:PTHR13104
EMBL:BC102648 IPI:IPI00712406 RefSeq:NP_001029409.1
UniGene:Bt.87821 STRING:Q3SZY9 PRIDE:Q3SZY9
Ensembl:ENSBTAT00000008922 GeneID:505293 KEGG:bta:505293 CTD:10001
GeneTree:ENSGT00390000017666 HOVERGEN:HBG006825 InParanoid:Q3SZY9
OMA:RVDMLLA OrthoDB:EOG44MXSS NextBio:20867066 Uniprot:Q3SZY9
Length = 246
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 68/184 (36%), Positives = 102/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|E1BZ92 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9031 "Gallus gallus" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 GO:GO:0016592
GO:GO:0001104 KO:K15128 PANTHER:PTHR13104 CTD:10001
GeneTree:ENSGT00390000017666 OMA:RVDMLLA EMBL:AADN02003141
IPI:IPI00592512 RefSeq:NP_001152897.1 UniGene:Gga.10840
UniGene:Gga.38055 Ensembl:ENSGALT00000022450 GeneID:426282
KEGG:gga:426282 NextBio:20827936 Uniprot:E1BZ92
Length = 246
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ + LD L++M
Sbjct: 9 NLLGISWVDSAWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQRM-TLD--HLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEEREKAKPKAKKKEEPSSIFQRHRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|H9KYN6 [details] [associations]
symbol:H9KYN6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR007018 InterPro:IPR016820 Pfam:PF04934
PIRSF:PIRSF023869 GO:GO:0016592 GO:GO:0001104 PANTHER:PTHR13104
GeneTree:ENSGT00390000017666 EMBL:AADN02073008
Ensembl:ENSGALT00000000047 Uniprot:H9KYN6
Length = 190
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ + LD L++M
Sbjct: 9 NLLGISWVDSAWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQRM-TLD--HLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E +K +E + + RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEEREKAKPKAKKKEEPSSIFQRHRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|F1S496 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9823 "Sus scrofa" [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 GO:GO:0003677
GO:GO:0045944 GO:GO:0003713 GO:GO:0016592 GO:GO:0001104
PANTHER:PTHR13104 GeneTree:ENSGT00390000017666 OMA:RVDMLLA
EMBL:CU469452 Ensembl:ENSSSCT00000002590 Uniprot:F1S496
Length = 248
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 68/184 (36%), Positives = 102/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKIKPKVKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRK 198
L++K
Sbjct: 184 LRQK 187
>UNIPROTKB|B4E2P0 [details] [associations]
symbol:MED6 "cDNA FLJ59149, highly similar to RNA
polymerase transcriptional regulation mediator, subunit 6 homolog"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR007018 Pfam:PF04934
EMBL:AL357153 GO:GO:0016592 GO:GO:0001104 HOGENOM:HOG000035127
PANTHER:PTHR13104 HOVERGEN:HBG006825 UniGene:Hs.497353
HGNC:HGNC:19970 EMBL:AK304361 IPI:IPI00909716 SMR:B4E2P0
STRING:B4E2P0 Ensembl:ENST00000440435 UCSC:uc010tti.2
Uniprot:B4E2P0
Length = 181
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 57/132 (43%), Positives = 83/132 (62%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>UNIPROTKB|B4DU17 [details] [associations]
symbol:MED6 "Mediator of RNA polymerase II transcription
subunit 6" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 EMBL:AL357153
GO:GO:0016592 GO:GO:0001104 HOGENOM:HOG000035127 PANTHER:PTHR13104
HOVERGEN:HBG006825 OMA:RVDMLLA UniGene:Hs.497353 HGNC:HGNC:19970
EMBL:AK300460 IPI:IPI00102495 SMR:B4DU17 STRING:B4DU17
Ensembl:ENST00000430055 UCSC:uc010tth.2 Uniprot:B4DU17
Length = 253
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 69/191 (36%), Positives = 103/191 (53%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVSLFS 123
Query: 139 ----RALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A S GY D E +K +E + + +R
Sbjct: 124 FYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQR 183
Query: 188 VDQILASLQRK 198
VD +L L++K
Sbjct: 184 VDALLLDLRQK 194
>ZFIN|ZDB-GENE-040625-61 [details] [associations]
symbol:med6 "mediator complex subunit 6"
species:7955 "Danio rerio" [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869
ZFIN:ZDB-GENE-040625-61 GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097
HOGENOM:HOG000035127 KO:K15128 PANTHER:PTHR13104 CTD:10001
GeneTree:ENSGT00390000017666 HOVERGEN:HBG006825 OrthoDB:EOG44MXSS
OMA:IAYYYVI EMBL:BC071547 IPI:IPI00489919 RefSeq:NP_001002084.1
UniGene:Dr.32670 STRING:Q6IQ63 PRIDE:Q6IQ63
Ensembl:ENSDART00000044115 GeneID:415174 KEGG:dre:415174
InParanoid:Q6IQ63 NextBio:20818844 ArrayExpress:Q6IQ63 Bgee:Q6IQ63
Uniprot:Q6IQ63
Length = 254
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 68/184 (36%), Positives = 102/184 (55%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + + +YF+ + FYDRTCNNE ++M+ LD L+++
Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQR-STLD--HLTQL 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+
Sbjct: 64 VGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A S GY D E SK +E L + +RVD +L
Sbjct: 124 HGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLD 183
Query: 195 LQRK 198
L+ K
Sbjct: 184 LRNK 187
>FB|FBgn0024330 [details] [associations]
symbol:MED6 "Mediator complex subunit 6" species:7227
"Drosophila melanogaster" [GO:0016592 "mediator complex"
evidence=ISS;IDA;IMP] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=ISS;IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;IMP] [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0046331 "lateral inhibition"
evidence=IMP] InterPro:IPR007018 InterPro:IPR016820 Pfam:PF04934
PIRSF:PIRSF023869 EMBL:AE014297 GO:GO:0005737 GO:GO:0046331
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 CTD:10001 GeneTree:ENSGT00390000017666
OMA:RVDMLLA EMBL:AY118517 EMBL:BT001633 RefSeq:NP_001163577.1
RefSeq:NP_001163578.1 RefSeq:NP_651988.2 RefSeq:NP_731403.2
UniGene:Dm.12701 ProteinModelPortal:Q8MSX2 IntAct:Q8MSX2
MINT:MINT-327804 STRING:Q8MSX2 PaxDb:Q8MSX2 PRIDE:Q8MSX2
EnsemblMetazoa:FBtr0082161 EnsemblMetazoa:FBtr0082162
EnsemblMetazoa:FBtr0301872 EnsemblMetazoa:FBtr0301873 GeneID:44728
KEGG:dme:Dmel_CG9473 FlyBase:FBgn0024330 InParanoid:Q8MSX2
OrthoDB:EOG4TB2TD PhylomeDB:Q8MSX2 GenomeRNAi:44728 NextBio:837577
Bgee:Q8MSX2 Uniprot:Q8MSX2
Length = 249
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 64/173 (36%), Positives = 91/173 (52%)
Query: 41 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFV 98
L + DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+V
Sbjct: 24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYV 80
Query: 99 IRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE-- 156
IRKQ R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S
Sbjct: 81 IRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYH 140
Query: 157 -KIGYV-DAENDGGTPLHSKAGKETID---------LKEVKRVDQILASLQRK 198
GY D ++ SK+ K+ + L + +RVD +LA L RK
Sbjct: 141 PNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRK 193
>CGD|CAL0005486 [details] [associations]
symbol:orf19.7420 species:5476 "Candida albicans" [GO:0070847
"core mediator complex" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001128 "RNA polymerase II transcription
coactivator activity involved in preinitiation complex assembly"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] InterPro:IPR007018 InterPro:IPR016612 Pfam:PF04934
PIRSF:PIRSF013286 CGD:CAL0005486 EMBL:AACQ01000074 GO:GO:0016592
GO:GO:0001104 eggNOG:COG5097 KO:K15128 PANTHER:PTHR13104
RefSeq:XP_716085.1 STRING:Q5A2Z1 GeneID:3642272 KEGG:cal:CaO19.7420
Uniprot:Q5A2Z1
Length = 263
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/109 (39%), Positives = 68/109 (62%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+
Sbjct: 80 AYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
>POMBASE|SPAC1002.15c [details] [associations]
symbol:pmc5 "mediator complex subunit Pmc5"
species:4896 "Schizosaccharomyces pombe" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IC] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR007018 InterPro:IPR016612 Pfam:PF04934
PIRSF:PIRSF013286 PomBase:SPAC1002.15c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0016592 GO:GO:0001104
PDB:4H63 PDBsum:4H63 eggNOG:COG5097 KO:K15128 PANTHER:PTHR13104
RefSeq:NP_593503.1 PDB:4H61 PDBsum:4H61 IntAct:Q9US45 STRING:Q9US45
EnsemblFungi:SPAC1002.15c.1 GeneID:2543263 KEGG:spo:SPAC1002.15c
HOGENOM:HOG000093949 OMA:NEPADEN OrthoDB:EOG4VX5FP NextBio:20804284
Uniprot:Q9US45
Length = 216
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 49/140 (35%), Positives = 78/140 (55%)
Query: 24 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQ 77
D+T I +R W+ + L + +YF+ S FY NNE L+M+S + LD+ SQ
Sbjct: 10 DLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQ 69
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
L ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP + + R+
Sbjct: 70 LKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRM 129
Query: 138 GRALHYIQKAFTTAASKLEK 157
A + QKA T K+EK
Sbjct: 130 LNATYCFQKALT----KIEK 145
>WB|WBGene00003164 [details] [associations]
symbol:mdt-6 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 GO:GO:0009792
GO:GO:0040007 GO:GO:0008406 GO:GO:0002119 GO:GO:0048477
GO:GO:0007283 GO:GO:0040035 GO:GO:0007281 GO:GO:0040027
GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 GeneTree:ENSGT00390000017666 EMBL:FO081184
EMBL:U78081 PIR:T37473 RefSeq:NP_504791.3 ProteinModelPortal:Q9N337
IntAct:Q9N337 STRING:Q9N337 PaxDb:Q9N337 EnsemblMetazoa:Y57E12AL.5
GeneID:179091 KEGG:cel:CELE_Y57E12AL.5 UCSC:Y57E12AL.5 CTD:179091
WormBase:Y57E12AL.5 HOGENOM:HOG000113546 InParanoid:Q9N337
OMA:IAYYYVI NextBio:903880 Uniprot:Q9N337
Length = 250
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 41/124 (33%), Positives = 76/124 (61%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGI 77
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 78 QYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPL 136
Query: 145 QKAF 148
+ AF
Sbjct: 137 RNAF 140
>UNIPROTKB|Q9N337 [details] [associations]
symbol:mdt-6 "Mediator of RNA polymerase II transcription
subunit 6" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR007018
InterPro:IPR016820 Pfam:PF04934 PIRSF:PIRSF023869 GO:GO:0009792
GO:GO:0040007 GO:GO:0008406 GO:GO:0002119 GO:GO:0048477
GO:GO:0007283 GO:GO:0040035 GO:GO:0007281 GO:GO:0040027
GO:GO:0016592 GO:GO:0001104 eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 GeneTree:ENSGT00390000017666 EMBL:FO081184
EMBL:U78081 PIR:T37473 RefSeq:NP_504791.3 ProteinModelPortal:Q9N337
IntAct:Q9N337 STRING:Q9N337 PaxDb:Q9N337 EnsemblMetazoa:Y57E12AL.5
GeneID:179091 KEGG:cel:CELE_Y57E12AL.5 UCSC:Y57E12AL.5 CTD:179091
WormBase:Y57E12AL.5 HOGENOM:HOG000113546 InParanoid:Q9N337
OMA:IAYYYVI NextBio:903880 Uniprot:Q9N337
Length = 250
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 41/124 (33%), Positives = 76/124 (61%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGI 77
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 78 QYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPL 136
Query: 145 QKAF 148
+ AF
Sbjct: 137 RNAF 140
>SGD|S000001100 [details] [associations]
symbol:MED6 "Subunit of the RNA polymerase II mediator
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0070847 "core mediator
complex" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0001128 "RNA polymerase II transcription coactivator activity
involved in preinitiation complex assembly" evidence=IDA]
[GO:0051123 "RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IDA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007018 InterPro:IPR016612 Pfam:PF04934
PIRSF:PIRSF013286 SGD:S000001100 EMBL:BK006934 GO:GO:0016592
EMBL:U00061 GO:GO:0001128 GO:GO:0070847 PDB:3RJ1 PDB:4GWP PDB:4GWQ
PDBsum:3RJ1 PDBsum:4GWP PDBsum:4GWQ eggNOG:COG5097 KO:K15128
PANTHER:PTHR13104 GeneTree:ENSGT00390000017666 HOGENOM:HOG000093949
OrthoDB:EOG4VX5FP EMBL:U78080 PIR:S46708 RefSeq:NP_011925.1
ProteinModelPortal:P38782 SMR:P38782 DIP:DIP-2093N IntAct:P38782
MINT:MINT-542534 STRING:P38782 PaxDb:P38782 PeptideAtlas:P38782
EnsemblFungi:YHR058C GeneID:856455 KEGG:sce:YHR058C CYGD:YHR058c
OMA:EPDFWVI NextBio:982090 Genevestigator:P38782 GermOnline:YHR058C
Uniprot:P38782
Length = 295
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 77 QLSKMTGIEYMLSEVMEPHLFVIRKQKRD---------GPEKVTPMLTYYVLDGSIYQAP 127
+L K+ G EY+LS V EP +VIRKQ+R GPE + P+ YY++ +IYQ+P
Sbjct: 106 ELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPE-IIPLQDYYIIGANIYQSP 164
Query: 128 QLCNVFSARIGRALHYIQKAFTTAASKLE 156
+ + +R+ +++ + +E
Sbjct: 165 TIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 251 193 0.00098 110 3 11 22 0.43 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 590 (63 KB)
Total size of DFA: 154 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.19u 0.15s 17.34t Elapsed: 00:00:01
Total cpu time: 17.19u 0.15s 17.34t Elapsed: 00:00:01
Start: Fri May 10 13:02:56 2013 End: Fri May 10 13:02:57 2013