BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025523
(251 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225442396|ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 6 [Vitis vinifera]
Length = 258
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/254 (81%), Positives = 221/254 (87%), Gaps = 4/254 (1%)
Query: 1 MATPPPGA---NLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYD 57
MA P P A N +G PPA P PPGTDMTGICFRDQLWLN+YPLDRN++FDYF LS FYD
Sbjct: 6 MAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD 65
Query: 58 RTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYY 117
TCNNEQLR+RSIHPLD S LSKMTG EYML+EVMEPHLFVIRKQKRDGPEKVTPMLTYY
Sbjct: 66 WTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYY 125
Query: 118 VLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGK 177
+LDGSIYQAPQLCNVF+ARIGRAL++I KAFTTAASKLEKIGYVDAEN+ L SK GK
Sbjct: 126 ILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPA-LESKVGK 184
Query: 178 ETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
ETID KEV RVDQILASLQRKLPPAPPPP FPEGYAPP T E EK PETQQ AEPQ PA+
Sbjct: 185 ETIDFKEVMRVDQILASLQRKLPPAPPPPQFPEGYAPPPTAEGEKGPETQQAAEPQLPAL 244
Query: 238 DPIIDQGPAKRMKI 251
DPIIDQGP+KRMK
Sbjct: 245 DPIIDQGPSKRMKF 258
>gi|147800916|emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
Length = 253
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/254 (81%), Positives = 221/254 (87%), Gaps = 4/254 (1%)
Query: 1 MATPPPGA---NLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYD 57
MA P P A N +G PPAAP PPGTDMTGICFRDQLWLN+YPLDRN++FDYF LS FYD
Sbjct: 1 MAPPNPAAGNPNFDGNPPAAPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD 60
Query: 58 RTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYY 117
TCNNEQLR+RSIHPLD S LSKMTG EYML+EVMEPHLFVIRKQKRDGPEKVTPMLTYY
Sbjct: 61 WTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYY 120
Query: 118 VLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGK 177
+LDGSIYQAPQLCNVF+ARIGRAL++I KAFTTAASKLEKIGYVDAEN+ L SK GK
Sbjct: 121 ILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPA-LESKVGK 179
Query: 178 ETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
ETID KEV RVDQILASLQRKLPPAPP P FPEGYAPP T E EK PETQQ AEPQ PA+
Sbjct: 180 ETIDFKEVMRVDQILASLQRKLPPAPPAPQFPEGYAPPPTAEGEKGPETQQAAEPQLPAL 239
Query: 238 DPIIDQGPAKRMKI 251
DPIIDQGP+KRMK
Sbjct: 240 DPIIDQGPSKRMKF 253
>gi|297743145|emb|CBI36012.3| unnamed protein product [Vitis vinifera]
Length = 226
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/227 (84%), Positives = 204/227 (89%), Gaps = 1/227 (0%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
MTGICFRDQLWLN+YPLDRN++FDYF LS FYD TCNNEQLR+RSIHPLD S LSKMTG
Sbjct: 1 MTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGT 60
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EYML+EVMEPHLFVIRKQKRDGPEKVTPMLTYY+LDGSIYQAPQLCNVF+ARIGRAL++I
Sbjct: 61 EYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFTARIGRALYHI 120
Query: 145 QKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPP 204
KAFTTAASKLEKIGYVDAEN+ L SK GKETID KEV RVDQILASLQRKLPPAPP
Sbjct: 121 SKAFTTAASKLEKIGYVDAENE-NPALESKVGKETIDFKEVMRVDQILASLQRKLPPAPP 179
Query: 205 PPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PP FPEGYAPP T E EK PETQQ AEPQ PA+DPIIDQGP+KRMK
Sbjct: 180 PPQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMKF 226
>gi|255549722|ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
communis]
gi|223544817|gb|EEF46332.1| RNA polymerase II mediator complex subunit, putative [Ricinus
communis]
Length = 251
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/253 (79%), Positives = 215/253 (84%), Gaps = 4/253 (1%)
Query: 1 MATPPPGANLEG--APPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDR 58
MAT PPGAN +G PA P PPGTDMTGICFRDQLWLNTYPLDRN+IFDYF LS FYD
Sbjct: 1 MATVPPGANFDGNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDW 60
Query: 59 TCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYV 118
TCNNEQLR++SIHPLD+S LSKMTG EYML+EV+EP+LFVIRKQKRD PEKVTPMLTYYV
Sbjct: 61 TCNNEQLRLQSIHPLDLSHLSKMTGTEYMLNEVIEPNLFVIRKQKRDSPEKVTPMLTYYV 120
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKE 178
LDGSIYQAPQLCNVF+ARIGRAL++I KAFTTAASKLEKIGYVD G SK GKE
Sbjct: 121 LDGSIYQAPQLCNVFAARIGRALYHISKAFTTAASKLEKIGYVDEGE--GVASESKVGKE 178
Query: 179 TIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAID 238
ID KEVKR+D ILAS+QRKLPPAPPPPPFPEGY PP T EAEK ET+Q E QPP +D
Sbjct: 179 VIDFKEVKRIDHILASIQRKLPPAPPPPPFPEGYVPPATVEAEKGSETRQAVETQPPPVD 238
Query: 239 PIIDQGPAKRMKI 251
PIIDQGPAKRMK
Sbjct: 239 PIIDQGPAKRMKF 251
>gi|449462906|ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 6-like [Cucumis sativus]
Length = 260
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/247 (79%), Positives = 211/247 (85%), Gaps = 8/247 (3%)
Query: 9 NLEGAP-PAAPPPPGTDMT---GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQ 64
N EG P PAAP PPGTDMT GICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNEQ
Sbjct: 15 NFEGGPLPAAPQPPGTDMTNLPGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQ 74
Query: 65 LRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIY 124
LRMRSIHPLD+SQLSKMTGIEYML+EVMEPHLFV RKQKRDGPEKVTPMLTYY+LDGSIY
Sbjct: 75 LRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIY 134
Query: 125 QAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKE 184
QAPQLC+VF+AR+ RAL+YI KAFTTA+SKLEKIGYVD+EN+ K KETI+ KE
Sbjct: 135 QAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE---EVKPAKETINFKE 191
Query: 185 VKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQG 244
VKRVD ILASLQRKLPPAPPPPPFPEGYAP T E EK PE QQ E Q P+ DPIIDQG
Sbjct: 192 VKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQ-GESQQPSADPIIDQG 250
Query: 245 PAKRMKI 251
PAKRMK
Sbjct: 251 PAKRMKF 257
>gi|356526061|ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 6-like [Glycine max]
Length = 252
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/254 (78%), Positives = 212/254 (83%), Gaps = 5/254 (1%)
Query: 1 MATPPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTC 60
MAT P LEG A PP TDMTGICFRDQLWLN++PLDRN++FDYF LS FYD TC
Sbjct: 1 MATAPGNQMLEGGGGAPQPPG-TDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTC 59
Query: 61 NNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLD 120
NNEQLRMRS+HPLDISQLSKMTG EYMLSEVMEPHLFVIRKQKRD P+KVTPML YYVLD
Sbjct: 60 NNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLD 119
Query: 121 GSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGY---VDAENDGGTPLHSKAGK 177
GSIYQAPQLCNVF+ARIGRAL+YIQKAFTTAASKLEKIGY D+EN+ L SK K
Sbjct: 120 GSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETAL-LESKTAK 178
Query: 178 ETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
ETID+KEVKRVD ILASLQRKLPPAPPPPPFPEGY PP T E EK ETQ+ AE Q P
Sbjct: 179 ETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTA 238
Query: 238 DPIIDQGPAKRMKI 251
DPIIDQGPAKRMK
Sbjct: 239 DPIIDQGPAKRMKF 252
>gi|224116560|ref|XP_002331927.1| predicted protein [Populus trichocarpa]
gi|222874599|gb|EEF11730.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 368 bits (945), Expect = e-99, Method: Compositional matrix adjust.
Identities = 187/232 (80%), Positives = 200/232 (86%), Gaps = 1/232 (0%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
PPGTDMTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNEQLR +SIHPLD+S L
Sbjct: 5 PPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRSQSIHPLDLSHLL 64
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
KMTG EYMLSEVMEPHLFV RKQKRD EKVTPMLTYYVLDGSIYQAPQLC+VF+AR+GR
Sbjct: 65 KMTGTEYMLSEVMEPHLFVFRKQKRDSAEKVTPMLTYYVLDGSIYQAPQLCSVFAARVGR 124
Query: 140 ALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
AL+YI KAF TAASKLEKIGYVD+EN+G SK GKE ID KEVKR+D ILASLQRKL
Sbjct: 125 ALYYISKAFGTAASKLEKIGYVDSENEGAAS-ESKTGKEVIDFKEVKRIDHILASLQRKL 183
Query: 200 PPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PPAPPPP FPEGY P T E EK PETQQ EPQ P++DPIIDQGPAKRMK
Sbjct: 184 PPAPPPPSFPEGYVPQPTTEEEKGPETQQGGEPQLPSVDPIIDQGPAKRMKF 235
>gi|388518953|gb|AFK47538.1| unknown [Medicago truncatula]
Length = 248
Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 192/251 (76%), Positives = 212/251 (84%), Gaps = 3/251 (1%)
Query: 1 MATPPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTC 60
MATP G L+G P A PP GTDMTGICFRDQLWLNTYPLDR+++FDYF LS FYD T
Sbjct: 1 MATPGMGM-LDGGVPTAQPP-GTDMTGICFRDQLWLNTYPLDRDLVFDYFALSPFYDWTS 58
Query: 61 NNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLD 120
NNEQLRMRS HPLD SQL+KM GIEY+LSEVMEPHLF+++KQKRD P+KVTPML YY+LD
Sbjct: 59 NNEQLRMRSHHPLDSSQLTKMIGIEYVLSEVMEPHLFIMKKQKRDSPDKVTPMLAYYILD 118
Query: 121 GSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETI 180
GSIYQAPQL NVF+ARIGRAL+YI+KAFTTAASKLEKIGYVD+EN+ P K KETI
Sbjct: 119 GSIYQAPQLSNVFAARIGRALYYIEKAFTTAASKLEKIGYVDSENETTIP-EPKVAKETI 177
Query: 181 DLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPI 240
DLKE+KRVD ILASLQRKLPPAPPPPPFPEGY PP T E EK PETQ+ AE P +DPI
Sbjct: 178 DLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEAAESLAPTVDPI 237
Query: 241 IDQGPAKRMKI 251
+DQGPAKRMK
Sbjct: 238 LDQGPAKRMKF 248
>gi|449517269|ref|XP_004165668.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Cucumis sativus]
Length = 226
Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/227 (81%), Positives = 198/227 (87%), Gaps = 4/227 (1%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
MTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNEQLRMRSIHPLD+SQLSKMTGI
Sbjct: 1 MTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGI 60
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EYML+EVMEPHLFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ RAL+YI
Sbjct: 61 EYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRALYYI 120
Query: 145 QKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPP 204
KAFTTA+SKLEKIGYVD+EN+ K KETI+ KEVKRVD ILASLQRKLPPAPP
Sbjct: 121 SKAFTTASSKLEKIGYVDSENESE---EVKPAKETINFKEVKRVDHILASLQRKLPPAPP 177
Query: 205 PPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PPPFPEGYAP T E EK PE QQ E Q P+ DPIIDQGPAKRMK
Sbjct: 178 PPPFPEGYAPAATAETEKGPENQQ-GESQQPSADPIIDQGPAKRMKF 223
>gi|357124816|ref|XP_003564093.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 6-like [Brachypodium distachyon]
Length = 260
Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 172/236 (72%), Positives = 193/236 (81%), Gaps = 5/236 (2%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI 75
A PPPPGTDMTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNE LR R IHPLD+
Sbjct: 23 ALPPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDITCNNESLRSRQIHPLDM 82
Query: 76 SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEK---VTPMLTYYVLDGSIYQAPQLCNV 132
SQL+KMTG+EY+LS+V EPHLFVIRKQKR EK + PML YY+LDGSIYQAPQLCNV
Sbjct: 83 SQLTKMTGMEYVLSDVQEPHLFVIRKQKRLSSEKSDPMLPMLAYYILDGSIYQAPQLCNV 142
Query: 133 FSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQIL 192
F++RI RA+H+I KAFTTA SKLEKIG V+ E+D SK KE IDLKE+KRVD IL
Sbjct: 143 FASRISRAMHHISKAFTTACSKLEKIGNVETESDAAAS-ESKTQKEAIDLKELKRVDHIL 201
Query: 193 ASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
SLQRKLPPAPPPPPFPEGY PP + EK P+ ++E PP+IDPIIDQGPAKR
Sbjct: 202 MSLQRKLPPAPPPPPFPEGYVPPSASDQEKAPD-DLSSEALPPSIDPIIDQGPAKR 256
>gi|218197806|gb|EEC80233.1| hypothetical protein OsI_22170 [Oryza sativa Indica Group]
Length = 258
Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 166/231 (71%), Positives = 188/231 (81%), Gaps = 4/231 (1%)
Query: 18 PPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ 77
PPPPGTDMTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNE LR R IHPLD+S
Sbjct: 28 PPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDLTCNNESLRSRQIHPLDMSH 87
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
L+KMTG+EY+LS+VMEPHLFVIRKQ+R+ PEK ML YY+LDGSIYQAPQLC+VF++RI
Sbjct: 88 LTKMTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRI 147
Query: 138 GRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQR 197
RA+H+I KAFTTA SKLEKIG+V+ E D SK KE IDLKE+KRVD IL SLQR
Sbjct: 148 SRAMHHISKAFTTACSKLEKIGHVETEPDTAAS-ESKTQKEAIDLKELKRVDHILMSLQR 206
Query: 198 KLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
KL PAPPPPPFPEGY P + E+A D +E PP +DPIIDQGPAKR
Sbjct: 207 KLQPAPPPPPFPEGYVPSEQEKASDD---LLASEALPPQVDPIIDQGPAKR 254
>gi|115467102|ref|NP_001057150.1| Os06g0217500 [Oryza sativa Japonica Group]
gi|51091148|dbj|BAD35844.1| putative RNA polymerase transcriptional regulation mediator [Oryza
sativa Japonica Group]
gi|113595190|dbj|BAF19064.1| Os06g0217500 [Oryza sativa Japonica Group]
Length = 242
Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 162/227 (71%), Positives = 184/227 (81%), Gaps = 4/227 (1%)
Query: 22 GTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
GTDMTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNE LR R IHPLD+S L+KM
Sbjct: 16 GTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDLTCNNESLRSRQIHPLDMSHLTKM 75
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
TG+EY+LS+VMEPHLFVIRKQ+R+ PEK ML YY+LDGSIYQAPQLC+VF++RI RA+
Sbjct: 76 TGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRISRAM 135
Query: 142 HYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPP 201
H+I KAFTTA SKLEKIG+V+ E D SK KE IDLKE+KRVD IL SLQRKL P
Sbjct: 136 HHISKAFTTACSKLEKIGHVETEPDTAAS-ESKTQKEAIDLKELKRVDHILMSLQRKLQP 194
Query: 202 APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
APPPPPFPEGY P + E+A D +E PP +DPIIDQGPAKR
Sbjct: 195 APPPPPFPEGYVPSEQEKASDDL---LASEALPPQVDPIIDQGPAKR 238
>gi|297830834|ref|XP_002883299.1| hypothetical protein ARALYDRAFT_479655 [Arabidopsis lyrata subsp.
lyrata]
gi|297329139|gb|EFH59558.1| hypothetical protein ARALYDRAFT_479655 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 184/232 (79%), Gaps = 2/232 (0%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
PPGTDMTGI FRDQLW+N+YPLDRN IFDYF LS FYD TCNNE LR RSIHPLD+S LS
Sbjct: 28 PPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLS 87
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
KMTG+EYML++ EP+LFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ R
Sbjct: 88 KMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSR 147
Query: 140 ALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
++ I KAF+ AASKLE I VD EN P SK ET+DLKE+KRVD IL SL RKL
Sbjct: 148 TIYNISKAFSVAASKLETIRQVDTENQ-NEPSESKPASETVDLKEMKRVDVILTSLYRKL 206
Query: 200 PPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PAPPPPPFPEGY Q EK+ Q E QPP IDPIIDQGPAKRMK+
Sbjct: 207 APAPPPPPFPEGYV-SQEALGEKEELGTQGGESQPPQIDPIIDQGPAKRMKL 257
>gi|22331241|ref|NP_188772.2| RNA polymerase transcriptional regulation mediator-like protein
[Arabidopsis thaliana]
gi|9294682|dbj|BAB03048.1| unnamed protein product [Arabidopsis thaliana]
gi|17979205|gb|AAL49841.1| unknown protein [Arabidopsis thaliana]
gi|20258923|gb|AAM14177.1| unknown protein [Arabidopsis thaliana]
gi|332642975|gb|AEE76496.1| RNA polymerase transcriptional regulation mediator-like protein
[Arabidopsis thaliana]
Length = 257
Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 165/232 (71%), Positives = 182/232 (78%), Gaps = 2/232 (0%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
PPGTDMTGI FRDQLW+N+YPLDRN IFDYF LS FYD TCNNE LR RSIHPLD+S LS
Sbjct: 28 PPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLS 87
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
KMTG+EYML++ EP+LFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ R
Sbjct: 88 KMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSR 147
Query: 140 ALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
++ I KAFT AASKLE I VD EN P SK ET+DLKE+KRVD IL SL RKL
Sbjct: 148 TIYNISKAFTDAASKLETIRQVDTENQ-NEPAESKPASETVDLKEMKRVDVILTSLYRKL 206
Query: 200 PPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
P PPPPPFPEGY Q EK+ Q E QPP +DPIIDQGPAKRMK
Sbjct: 207 APPPPPPPFPEGYV-SQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 257
>gi|242092438|ref|XP_002436709.1| hypothetical protein SORBIDRAFT_10g007370 [Sorghum bicolor]
gi|241914932|gb|EER88076.1| hypothetical protein SORBIDRAFT_10g007370 [Sorghum bicolor]
Length = 249
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/245 (68%), Positives = 196/245 (80%), Gaps = 6/245 (2%)
Query: 4 PPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNE 63
PPPG + GA PPPPGTDMTGICFRDQLWL+TYPLDRN++FDYF LS FYD TCNNE
Sbjct: 7 PPPGPDGAGA---LPPPPGTDMTGICFRDQLWLDTYPLDRNLVFDYFALSPFYDITCNNE 63
Query: 64 QLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSI 123
LR R IHPLD+S L+KMTG+EY+LSEVMEPHLFVIRKQKR+ PEK PML YY+LDGSI
Sbjct: 64 SLRSRQIHPLDMSHLTKMTGMEYLLSEVMEPHLFVIRKQKRESPEKSNPMLAYYILDGSI 123
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLK 183
YQAPQLCNVF++RI R +H+I KAFT A SKLEKIG V+ E+D SK KE IDLK
Sbjct: 124 YQAPQLCNVFASRISRTMHHISKAFTIACSKLEKIGNVETESD-AVASESKTQKEAIDLK 182
Query: 184 EVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQ 243
E+KR+D IL+SL+RK+ APPPPP+PEGY PP E+ EK P+ +E PP +DPIIDQ
Sbjct: 183 ELKRIDHILSSLKRKIGAAPPPPPYPEGYVPPSAEQ-EKAPDDVAASE-APPQLDPIIDQ 240
Query: 244 GPAKR 248
GP+KR
Sbjct: 241 GPSKR 245
>gi|326499017|dbj|BAK05999.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503272|dbj|BAJ99261.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/225 (72%), Positives = 182/225 (80%), Gaps = 4/225 (1%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
DMTGICFRDQLWLNTYPLDRN++FDYF LS FYD TCNNE LR R IHPLD+SQL+KMTG
Sbjct: 25 DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDITCNNESLRSRQIHPLDMSQLTKMTG 84
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY+LSEVMEPHLFV+RKQKR EK P+L YY+LDGSIYQAP L +VF++RI RA+H+
Sbjct: 85 LEYVLSEVMEPHLFVMRKQKRSNSEKADPLLAYYILDGSIYQAPLLGSVFASRISRAMHH 144
Query: 144 IQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAP 203
I KAF+TA SKLEKIG + E D SKA KETIDLKE+KRVD IL SLQRKLPPAP
Sbjct: 145 ISKAFSTACSKLEKIGNAETEADAAAS-ESKAQKETIDLKELKRVDHILMSLQRKLPPAP 203
Query: 204 PPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
PPPPFP+GY P E EK P+ +E PPAIDPIIDQGPAKR
Sbjct: 204 PPPPFPDGYVPT---EQEKGPDDLLASEALPPAIDPIIDQGPAKR 245
>gi|226504820|ref|NP_001146205.1| uncharacterized protein LOC100279775 [Zea mays]
gi|194698988|gb|ACF83578.1| unknown [Zea mays]
gi|195635289|gb|ACG37113.1| RNA polymerase transcriptional regulation mediator subunit 6 [Zea
mays]
gi|219886171|gb|ACL53460.1| unknown [Zea mays]
gi|413952664|gb|AFW85313.1| RNA polymerase transcriptional regulation mediator subunit 6
isoform 1 [Zea mays]
gi|413952665|gb|AFW85314.1| RNA polymerase transcriptional regulation mediator subunit 6
isoform 2 [Zea mays]
Length = 249
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/245 (69%), Positives = 197/245 (80%), Gaps = 6/245 (2%)
Query: 4 PPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNE 63
PPPG + GA A PPPGTDMTGICFRDQLWL+TYPLDRN++FDYF LS FYD TCNNE
Sbjct: 7 PPPGPD--GAV-ALLPPPGTDMTGICFRDQLWLDTYPLDRNLVFDYFALSPFYDITCNNE 63
Query: 64 QLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSI 123
LR R IHPLD+S L+KMTG+EY+LSEVMEPHLFVIRKQKR+ PEK +PML YY+LDGSI
Sbjct: 64 SLRSRQIHPLDMSHLTKMTGMEYLLSEVMEPHLFVIRKQKRESPEKSSPMLAYYILDGSI 123
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLK 183
YQAPQLCNVF++RI RA+H+I KAFT A SKLEKIG V+ E D SK KE IDLK
Sbjct: 124 YQAPQLCNVFASRISRAMHHISKAFTIACSKLEKIGNVETEPDAVAS-ESKTQKEAIDLK 182
Query: 184 EVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQ 243
E+KR+D IL+SL+RK+ APPPPP+PEGY PP E+ EK P+ +E PP +DPIIDQ
Sbjct: 183 ELKRIDHILSSLKRKIGAAPPPPPYPEGYVPPSAEQ-EKAPDDVAASE-APPQLDPIIDQ 240
Query: 244 GPAKR 248
GP+KR
Sbjct: 241 GPSKR 245
>gi|238479844|ref|NP_001154633.1| RNA polymerase transcriptional regulation mediator-like protein
[Arabidopsis thaliana]
gi|395406783|sp|F4IXJ7.1|MED6_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 6
gi|332642976|gb|AEE76497.1| RNA polymerase transcriptional regulation mediator-like protein
[Arabidopsis thaliana]
Length = 298
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 183/273 (67%), Gaps = 43/273 (15%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
PPGTDMTGI FRDQLW+N+YPLDRN IFDYF LS FYD TCNNE LR RSIHPLD+S LS
Sbjct: 28 PPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLS 87
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
KMTG+EYML++ EP+LFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ R
Sbjct: 88 KMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSR 147
Query: 140 ALHYIQKAFTTAASKLEKI-------------------------------------GY-- 160
++ I KAFT AASKLE I G+
Sbjct: 148 TIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGEQVYGFNK 207
Query: 161 --VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTE 218
D EN P SK ET+DLKE+KRVD IL SL RKL P PPPPPFPEGY Q
Sbjct: 208 FLFDTENQ-NEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGYV-SQEA 265
Query: 219 EAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
EK+ Q E QPP +DPIIDQGPAKRMK
Sbjct: 266 LGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298
>gi|302786582|ref|XP_002975062.1| hypothetical protein SELMODRAFT_232488 [Selaginella moellendorffii]
gi|300157221|gb|EFJ23847.1| hypothetical protein SELMODRAFT_232488 [Selaginella moellendorffii]
Length = 227
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 145/189 (76%), Gaps = 7/189 (3%)
Query: 11 EGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSI 70
EG AAPP P TD TGI F DQLWL+TYPLDRN++FDYF LS FYDR+C+NEQLRMRS+
Sbjct: 3 EGLGGAAPPLP-TDQTGISFHDQLWLSTYPLDRNLVFDYFVLSPFYDRSCSNEQLRMRSV 61
Query: 71 HPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLC 130
HPLD++QLSKMTG+EY+L E EP+LFV+RKQKR+ P+KV+ + YY+LDG IYQAP L
Sbjct: 62 HPLDMTQLSKMTGVEYVLLEAQEPNLFVLRKQKRESPDKVSHLSAYYILDGHIYQAPLLY 121
Query: 131 NVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQ 190
+V +R+ RA+H+I AF+ ++KLEKIGY D EN+ H +DLKEV R+DQ
Sbjct: 122 SVVCSRVARAVHHISAAFSQVSAKLEKIGY-DDENE-----HESDTSGRVDLKEVLRIDQ 175
Query: 191 ILASLQRKL 199
IL ++ RKL
Sbjct: 176 ILGNVLRKL 184
>gi|168011075|ref|XP_001758229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690685|gb|EDQ77051.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 184
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
Query: 21 PGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSK 80
PGT+MT I FRDQLWL+ YPLDRN++FDYF LS FYDRTCNNEQLRM +IHPLD++ LSK
Sbjct: 1 PGTEMTSISFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSK 60
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
TG+EY+L E EPHLFVIRKQKRDGPEKV+ YYVLDGSIYQAP L NV +R+ R+
Sbjct: 61 KTGMEYILHEAQEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRS 120
Query: 141 LHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
L++I AF A++KLEKIG E D ++ + +D+KEV RVD ILA + RKL
Sbjct: 121 LYHITNAFAQASAKLEKIG--TGEADPADVQVKQSTTKFVDMKEVMRVDSILAGIMRKL 177
>gi|302784873|ref|XP_002974208.1| hypothetical protein SELMODRAFT_58063 [Selaginella moellendorffii]
gi|300157806|gb|EFJ24430.1| hypothetical protein SELMODRAFT_58063 [Selaginella moellendorffii]
Length = 184
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 136/177 (76%), Gaps = 6/177 (3%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMT 82
TD TGI F DQLWL+TYPLDRN++FDYF LS FYDR+C+NEQLRMRS+HPLD++QLSKMT
Sbjct: 4 TDQTGISFHDQLWLSTYPLDRNLVFDYFVLSPFYDRSCSNEQLRMRSVHPLDMTQLSKMT 63
Query: 83 GIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 142
G+EY+L E EP+LFV+RKQKR+ P+KV + YY+LD IYQAP L +V +R+ RA+H
Sbjct: 64 GVEYVLLEAQEPNLFVLRKQKRESPDKVLHLSAYYILDSHIYQAPLLYSVVCSRVARAVH 123
Query: 143 YIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKL 199
+I AF+ ++KLEKIGY D EN+ H +DLKE+ R+DQIL ++ RKL
Sbjct: 124 HISAAFSQVSAKLEKIGY-DDENE-----HESDTSGRVDLKEILRIDQILGNVLRKL 174
>gi|294462332|gb|ADE76715.1| unknown [Picea sitchensis]
Length = 166
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 135/171 (78%), Gaps = 7/171 (4%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTGIEYML+EVMEPHLFVIRKQKRDGP+KVTPMLTYYVLDGSIYQAPQL +VF++R+ RA
Sbjct: 1 MTGIEYMLNEVMEPHLFVIRKQKRDGPDKVTPMLTYYVLDGSIYQAPQLSSVFASRMVRA 60
Query: 141 LHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLP 200
L+YI K+FT AASKLEKIGY D E D P +KAG E ID KEV RVD IL +LQRKL
Sbjct: 61 LYYISKSFTVAASKLEKIGY-DTEGDSVKP-ETKAGAENIDFKEVMRVDHILTTLQRKLS 118
Query: 201 PAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PAPPPPPFPEG+A P ++ AE Q + Q DPIIDQG AKR+KI
Sbjct: 119 PAPPPPPFPEGFAAPSSDTAE-----TQDGQAQNGHTDPIIDQGAAKRLKI 164
>gi|222635202|gb|EEE65334.1| hypothetical protein OsJ_20601 [Oryza sativa Japonica Group]
Length = 168
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/168 (67%), Positives = 132/168 (78%), Gaps = 4/168 (2%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+LS+VMEPHLFVIRKQ+R+ PEK ML YY+LDGSIYQAPQLC+VF++RI RA
Sbjct: 1 MTGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRISRA 60
Query: 141 LHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLP 200
+H+I KAFTTA SKLEKIG+V+ E D SK KE IDLKE+KRVD IL SLQRKL
Sbjct: 61 MHHISKAFTTACSKLEKIGHVETEPDTAAS-ESKTQKEAIDLKELKRVDHILMSLQRKLQ 119
Query: 201 PAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
PAPPPPPFPEGY P + E+A D +E PP +DPIIDQGPAKR
Sbjct: 120 PAPPPPPFPEGYVPSEQEKASDDL---LASEALPPQVDPIIDQGPAKR 164
>gi|66809795|ref|XP_638621.1| hypothetical protein DDB_G0284421 [Dictyostelium discoideum AX4]
gi|74854251|sp|Q54PN3.1|MED6_DICDI RecName: Full=Putative mediator of RNA polymerase II transcription
subunit 6; AltName: Full=Putative mediator complex
subunit 6
gi|60467225|gb|EAL65259.1| hypothetical protein DDB_G0284421 [Dictyostelium discoideum AX4]
Length = 267
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 112/201 (55%), Gaps = 11/201 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G
Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 121
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ +
Sbjct: 122 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 181
Query: 144 IQKAFTTAASKLEK---IGYVDAENDGGTPLHSK-AGKETIDLKEVKRVDQILASLQRKL 199
+ +AF + +S + GY + SK A +++ KR+DQ++ SL K
Sbjct: 182 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 241
Query: 200 PPAPPPPPFPE----GYAPPQ 216
P P P+ G P Q
Sbjct: 242 PAINRPVENPQQMGGGITPQQ 262
>gi|383854247|ref|XP_003702633.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Megachile rotundata]
Length = 229
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 122/228 (53%), Gaps = 25/228 (10%)
Query: 10 LEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRM 67
L G PP P G+ + D W+ L+ N I DYF+ FYDRTCNNE ++M
Sbjct: 2 LSGRPPVTENP-----LGLSWHDSAWIPV--LNPNNIMDYFSERSNPFYDRTCNNEIIKM 54
Query: 68 RSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAP 127
+ + P QL MTG+EYML V EP L+VIRKQ R P TP+ YY++ G +YQAP
Sbjct: 55 QRLSP---DQLQNMTGLEYMLLHVQEPILYVIRKQHRHSPTLATPLADYYIIAGVVYQAP 111
Query: 128 QLCNVFSARIGRALHYIQKAFTTAASKLE----KIGYVDAENDGGTPLHSK----AGKET 179
L +V S+R+ +H++Q AF A+S K Y D +N G + +K +E
Sbjct: 112 DLASVVSSRLLSTVHHLQSAFEEASSCSRYHPSKGYYWDFKN--GKAMAAKKETPVREEP 169
Query: 180 IDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQ 227
L + +RVD +LA L RK P P P P A T E +++ +T+
Sbjct: 170 SSLFQRQRVDMLLAELTRKF---PLPVPKPAHQAIESTMEIKQEIKTE 214
>gi|156543394|ref|XP_001600142.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Nasonia vitripennis]
Length = 229
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 16/224 (7%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ + I DYF+ + FYDRTCNNE ++M+ ++P QL MTG
Sbjct: 14 GLSWHDSAWIPM--LNPSNIMDYFSERSNPFYDRTCNNEVVKMQRLNP---EQLMNMTGF 68
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R GP + TP+ YY++ G +YQAP L +V ++R+ A+H++
Sbjct: 69 EYILLHVQEPILYVIRKQHRHGPTQATPVADYYIIAGVVYQAPDLASVVNSRLLSAVHHL 128
Query: 145 QKAF--TTAASKLE-KIGYVDAENDGGTPLHSK---AGKETIDLKEVKRVDQILASLQRK 198
Q AF T+A S+ GY +G T K +E L + +RVD +L L RK
Sbjct: 129 QSAFEETSACSRYHPSKGYSWDLKNGKTAAAKKEIPVREEPSTLFQRQRVDMLLGELTRK 188
Query: 199 LPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIID 242
P P P P P T + +++ +T++ PP P ++
Sbjct: 189 Y-PLPVPRPVQAVTEP--TAQVKQENQTEKQGMKPPPERKPRVN 229
>gi|307203911|gb|EFN82818.1| Mediator of RNA polymerase II transcription subunit 6 [Harpegnathos
saltator]
Length = 226
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 106/193 (54%), Gaps = 12/193 (6%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQ 77
P ++ G+ + D W+ L+ + I DYF+ FYDRTCNNE ++M+ + P Q
Sbjct: 7 PTQENLLGLSWHDSAWIPV--LNPSNIMDYFSERSNPFYDRTCNNEIVKMQRLSP---DQ 61
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
L+ MTG+EY+L V EP L+VIRKQ+R P P+ YY++ G +YQAP L +V S+R+
Sbjct: 62 LTNMTGLEYILLHVQEPILYVIRKQQRHSPTTAVPLADYYIIAGIVYQAPDLGSVVSSRL 121
Query: 138 GRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
+H++Q AF A S GY D N +E L + +RVD +LA
Sbjct: 122 FSTVHHVQSAFEEAISYSRYHPSKGYSWDFTNGKAWAAKEPVREEPSSLFQRQRVDMLLA 181
Query: 194 SLQRKLP-PAPPP 205
L RK P P P P
Sbjct: 182 ELTRKFPLPVPKP 194
>gi|3329506|gb|AAC26869.1| RNA polymerase transcriptional regulation mediator [Homo sapiens]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 39/252 (15%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGY-----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
H IQ AF A S GY V E D P +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKVHEEQDKVRP-KAKRKEEPSSIFQRQRVDALLL 182
Query: 194 SLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDP 239
L++K PP P P P E P+T EE E QQT + P
Sbjct: 183 DLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP---- 238
Query: 240 IIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -----PEKRMRL 245
>gi|149737483|ref|XP_001487966.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Equus caballus]
Length = 246
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 124/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLP-----------PAPPPPPFPEGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K P P P E PP+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPPPETVKSEEKETTKNVQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|350417517|ref|XP_003491461.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Bombus impatiens]
Length = 229
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 22/203 (10%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPL 73
+A PP + G+ + D W+ L+ N I DYF+ FYDRTCNNE ++M+ + P
Sbjct: 3 SARPPVTENPLGLSWHDSAWIPV--LNPNNIMDYFSERSNPFYDRTCNNEIVKMQRLSP- 59
Query: 74 DISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVF 133
QL MTG+EY+L V P L+VIRKQ R P P+ YY++ G +YQAP L +V
Sbjct: 60 --DQLQNMTGLEYILLHVQAPILYVIRKQHRHTPTLAAPLADYYIIAGVVYQAPDLASVV 117
Query: 134 SARIGRALHYIQKAFTTAASKLE----KIGYVDAENDGGTPLHSKAGKET------IDLK 183
S+R+ +H++Q AF A+S K Y D +N A KET L
Sbjct: 118 SSRLLSTVHHLQSAFEEASSCSRYHPSKGYYWDFKNGKAM----AAKKETPVREEPSSLF 173
Query: 184 EVKRVDQILASLQRKLP-PAPPP 205
+ +RVD +LA L RK P P P P
Sbjct: 174 QRQRVDMLLAELTRKFPLPVPKP 196
>gi|296215408|ref|XP_002754106.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 1 [Callithrix jacchus]
gi|403264551|ref|XP_003924540.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Saimiri boliviensis boliviensis]
Length = 246
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLVD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVSAKAP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|114653732|ref|XP_510038.2| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 5 [Pan troglodytes]
gi|397507349|ref|XP_003824160.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 1 [Pan paniscus]
gi|426377352|ref|XP_004055430.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 1 [Gorilla gorilla gorilla]
gi|410207626|gb|JAA01032.1| mediator complex subunit 6 [Pan troglodytes]
gi|410247530|gb|JAA11732.1| mediator complex subunit 6 [Pan troglodytes]
gi|410247532|gb|JAA11733.1| mediator complex subunit 6 [Pan troglodytes]
gi|410247534|gb|JAA11734.1| mediator complex subunit 6 [Pan troglodytes]
gi|410247536|gb|JAA11735.1| mediator complex subunit 6 [Pan troglodytes]
gi|410247538|gb|JAA11736.1| mediator complex subunit 6 [Pan troglodytes]
gi|410287556|gb|JAA22378.1| mediator complex subunit 6 [Pan troglodytes]
gi|410338327|gb|JAA38110.1| mediator complex subunit 6 [Pan troglodytes]
gi|410338329|gb|JAA38111.1| mediator complex subunit 6 [Pan troglodytes]
Length = 246
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|42544155|ref|NP_005457.2| mediator of RNA polymerase II transcription subunit 6 [Homo
sapiens]
gi|29840782|sp|O75586.2|MED6_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Activator-recruited cofactor 33 kDa
component; Short=ARC33; AltName: Full=Mediator complex
subunit 6; Short=hMed6; AltName: Full=Renal carcinoma
antigen NY-REN-28
gi|13278645|gb|AAH04106.1| Mediator complex subunit 6 [Homo sapiens]
gi|30582501|gb|AAP35477.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) [Homo sapiens]
gi|49456355|emb|CAG46498.1| MED6 [Homo sapiens]
gi|60655907|gb|AAX32517.1| mediator of RNA polymerase II transcription subunit 6-like
[synthetic construct]
gi|60655909|gb|AAX32518.1| mediator of RNA polymerase II transcription subunit 6-like
[synthetic construct]
gi|119601444|gb|EAW81038.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_a [Homo sapiens]
gi|208966734|dbj|BAG73381.1| mediator complex subunit 6 [synthetic construct]
Length = 246
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|109084155|ref|XP_001082932.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 5 [Macaca mulatta]
gi|355693402|gb|EHH28005.1| hypothetical protein EGK_18337 [Macaca mulatta]
Length = 246
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|30583885|gb|AAP36191.1| Homo sapiens mediator of RNA polymerase II transcription, subunit 6
homolog (yeast) [synthetic construct]
gi|60652819|gb|AAX29104.1| mediator of RNA polymerase II transcription subunit 6-like
[synthetic construct]
Length = 247
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|330802203|ref|XP_003289109.1| hypothetical protein DICPUDRAFT_153426 [Dictyostelium purpureum]
gi|325080836|gb|EGC34375.1| hypothetical protein DICPUDRAFT_153426 [Dictyostelium purpureum]
Length = 273
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D T + +RD +WL +PL+++ + YF+ S FYD+ CNNE L+M+ + P + L M G
Sbjct: 72 DFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDP---AALKTMEG 128
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY +++ +EP ++I KQ R P V YYV++G+IYQAP L VF++RI ++L +
Sbjct: 129 LEYEVAKFVEPSFYLIAKQNRISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFH 188
Query: 144 IQKAFTTAASKLEK---IGY---VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQR 197
+ +AF +S + GY D N S ++ I+ + KR+D ++ SL
Sbjct: 189 LSEAFNKISSIINWDIINGYSFNFDPSNQQEKQKLSTYTRKQIE--DTKRLDTLIGSLFN 246
Query: 198 KLPPAPPPP 206
K PP P
Sbjct: 247 KFPPINTQP 255
>gi|291410853|ref|XP_002721703.1| PREDICTED: mediator of RNA polymerase II transcription, subunit 6
homolog [Oryctolagus cuniculus]
Length = 246
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLVD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQSKKEAEPVPETVKSEEKETTKNVQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|157822503|ref|NP_001100212.1| mediator of RNA polymerase II transcription subunit 6 [Rattus
norvegicus]
gi|149025061|gb|EDL81428.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) (predicted), isoform CRA_b [Rattus norvegicus]
gi|165970989|gb|AAI58787.1| Mediator complex subunit 6 [Rattus norvegicus]
Length = 246
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESAKSAQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|354489361|ref|XP_003506832.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Cricetulus griseus]
Length = 246
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLVD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKESAKNVQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|158564080|sp|Q921D4.2|MED6_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|148670772|gb|EDL02719.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_c [Mus musculus]
Length = 246
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|395857431|ref|XP_003801097.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 1 [Otolemur garnettii]
Length = 246
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 125/254 (49%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAVSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLVD 183
Query: 195 LQRKLPP---------APPP--------PPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P P PE ++EE E QQT + P
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQTKKETEPIPETI---KSEEKETTKNVQQTVNVKGP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PGKRMRL 245
>gi|417408993|gb|JAA51024.1| Putative mediator of rna polymerase ii transcription subunit 6-like
protein, partial [Desmodus rotundus]
Length = 246
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 37/254 (14%)
Query: 21 PGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQL 78
P ++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L
Sbjct: 6 PVDNLLGISWVDSSWIPA--LNSGNVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHL 60
Query: 79 SKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG 138
++M G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 61 NQMVGVEYILLHAQEPILFIIRKQQRQSPTQVVPLADYYIIAGVIYQAPDLGSVINSRVL 120
Query: 139 RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQI 191
A+H IQ AF A SK + D E +K +E + + +RVD +
Sbjct: 121 TAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKTKRKEEPSSIFQRQRVDAL 180
Query: 192 LASLQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAI 237
L L++K PP P P + A P ++EE E QQT + P
Sbjct: 181 LLDLRQKFPPKFVQHKSGEKPVPVDQTKKEAEPTPETVKSEEKETAKNIQQTVSTKGP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|5360103|gb|AAD42870.1|AF155104_1 NY-REN-28 antigen [Homo sapiens]
Length = 237
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 124/250 (49%), Gaps = 37/250 (14%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMT 82
+ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 1 LLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMV 55
Query: 83 GIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 142
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H
Sbjct: 56 GIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVH 115
Query: 143 YIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASL 195
IQ AF A SK + D E +K +E + + +RVD +L L
Sbjct: 116 GIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDL 175
Query: 196 QRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPII 241
++K PP P P P E P+T EE E QQT + P
Sbjct: 176 RQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP------ 229
Query: 242 DQGPAKRMKI 251
P KRM++
Sbjct: 230 ---PEKRMRL 236
>gi|62898253|dbj|BAD97066.1| mediator of RNA polymerase II transcription, subunit 6 homolog
[Homo sapiens]
Length = 246
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 122/254 (48%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P PE P EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVSVDQTKKEAEPIPETVKP---EEKETTKNVQQTVSAKGP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|197101723|ref|NP_001125116.1| mediator of RNA polymerase II transcription subunit 6 [Pongo
abelii]
gi|62510774|sp|Q5RD94.1|MED6_PONAB RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|55727012|emb|CAH90263.1| hypothetical protein [Pongo abelii]
Length = 246
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 39/252 (15%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGYV-----DAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
H IQ AF A S GY E D P +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRP-KAKRKEEPSSIFQRQRVDALLL 182
Query: 194 SLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDP 239
L++K PP P P P E P+T EE E QQT + P
Sbjct: 183 DLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGP---- 238
Query: 240 IIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -----PEKRMRL 245
>gi|431839087|gb|ELK01014.1| Mediator of RNA polymerase II transcription subunit 6 [Pteropus
alecto]
Length = 246
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKTKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPIPETVKSEEKETTKNIQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|344273965|ref|XP_003408789.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Loxodonta africana]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSTWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPA 236
L++K PP P P + A P ++EE E QQT + P+
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQTKKEAEPVPEAVKSEEKETTKNVQQTVSTKAPS 239
>gi|73964257|ref|XP_547885.2| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Canis lupus familiaris]
gi|301782756|ref|XP_002926794.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Ailuropoda melanoleuca]
gi|410962565|ref|XP_003987839.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Felis catus]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPPAPPPPPFPEGYAP-PQT-EEAEKDPETQQTAEPQPPA-IDPIIDQG--PAKRM 249
L++K PP E P QT +EAE PET ++ E + + I+ P KRM
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPIPETVKSEEKETTKNVQQIVSTKGPPEKRM 243
Query: 250 KI 251
++
Sbjct: 244 RL 245
>gi|281351070|gb|EFB26654.1| hypothetical protein PANDA_016487 [Ailuropoda melanoleuca]
Length = 239
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 2 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 56
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 57 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 116
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 117 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 176
Query: 195 LQRKLPPAPPPPPFPEGYAP-PQT-EEAEKDPETQQTAEPQPPA-IDPIIDQG--PAKRM 249
L++K PP E P QT +EAE PET ++ E + + I+ P KRM
Sbjct: 177 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPIPETVKSEEKETTKNVQQIVSTKGPPEKRM 236
Query: 250 KI 251
++
Sbjct: 237 RL 238
>gi|328788442|ref|XP_624826.3| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Apis mellifera]
Length = 229
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 110/217 (50%), Gaps = 27/217 (12%)
Query: 10 LEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRM 67
L G P P G+ + D W+ L+ N I DYF+ FYDRTCNNE ++M
Sbjct: 2 LSGRPAVTENP-----LGLSWHDSAWIPV--LNPNNIMDYFSERSNPFYDRTCNNEIVKM 54
Query: 68 RSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAP 127
+ + P QL MTG+EY+L V P L+VIRKQ R P P+ YY++ G +YQAP
Sbjct: 55 QRLSP---DQLQNMTGLEYILLHVQAPILYVIRKQHRHSPTLAAPLADYYIIAGVVYQAP 111
Query: 128 QLCNVFSARIGRALHYIQKAFTTAASKLE----KIGYVDAENDGGTPLHSKAGKET---- 179
L +V S+R+ +H++Q AF A+S K Y D +N A KET
Sbjct: 112 DLASVVSSRLLSTVHHLQSAFEEASSCSRYHPSKGYYWDFKNGKAM----AAKKETPVRE 167
Query: 180 --IDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAP 214
L + +RVD +LA L RK P P P P + P
Sbjct: 168 EPSSLFQRQRVDMLLAELTRKF-PLPVPKPIHQAIEP 203
>gi|332229025|ref|XP_003263687.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 1 [Nomascus leucogenys]
Length = 260
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 22/224 (9%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQ 233
L++K PP P P P +EAE PET ++ E +
Sbjct: 184 LRQKFPPKFVQLKPGEKPVP---VDQTKKEAEPVPETVKSEEKE 224
>gi|158254726|dbj|BAF83336.1| unnamed protein product [Homo sapiens]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GI+Y+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIKYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|395503950|ref|XP_003756324.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Sarcophilus harrisii]
Length = 246
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSSTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDQEEQDKAKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P PE +TEE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKPGEKPVPVDQTKKEPEPIPEAI---KTEEKETPKNVQQTTSTKCP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|194038506|ref|XP_001928077.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Sus scrofa]
Length = 246
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKIKPKVKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQTA + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPIPETVKSEEKETTKNIQQTAGTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|281211605|gb|EFA85767.1| putative mediator complex subunit 6 [Polysphondylium pallidum
PN500]
Length = 232
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+T I +RDQ+WL+ +PL++ I +YF+LS FYD+ CNNE L+M+ + P S L M G
Sbjct: 21 DLTQIMWRDQVWLSQFPLNKMTILNYFSLSQFYDKQCNNEILKMQRLDP---SALKTMVG 77
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY + EP LF+I KQ R YYV++GSIYQ+P + NV +R+ ++L +
Sbjct: 78 LEYEVVVDKEPLLFIIAKQNRLTANDAITQTLYYVINGSIYQSPDIKNVLESRMIQSLFH 137
Query: 144 IQKAF----TTAASKLEKIGYVDAENDGGTPLHSKAGKETI-----DLKEVKRVDQILAS 194
+ AF +T + K GY N G+ ++ + + + +++ KR D ++ +
Sbjct: 138 LINAFEKILSTVNWDIVK-GY--QINLDGSQMNQQEKSKLVAFTRKQIEDTKRFDSLINT 194
Query: 195 LQRKLPPAPPP 205
L +K PP P
Sbjct: 195 LLQKFPPIMKP 205
>gi|301098866|ref|XP_002898525.1| mediator of RNA polymerase II transcription subunit, putative
[Phytophthora infestans T30-4]
gi|262104950|gb|EEY63002.1| mediator of RNA polymerase II transcription subunit, putative
[Phytophthora infestans T30-4]
Length = 242
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 122/251 (48%), Gaps = 38/251 (15%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMT 82
D FRD +WL ++PL+ + YF LS FYDR+CNNE+L+M+ L + QL +
Sbjct: 7 VDDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQR---LGLDQLKNLR 63
Query: 83 GIEYML----SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG 138
G+EY L ++ M LF+IRKQ+R G +V P+ YYVLDG++YQAP + + ++R+
Sbjct: 64 GVEYELLPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLK 123
Query: 139 RALHYIQKAFTTAASKL-----EKIGYVDAENDGGTP----------LHSKAGKETIDLK 183
+ + + KAF A+ + E + + D P L K K +
Sbjct: 124 KCSYRVNKAFHGLAAGVRFSPTEGYAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRE 183
Query: 184 EVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQ-TAEPQPPAIDPIID 242
RVD IL L +K +AP ++ E + T P+ PAI D
Sbjct: 184 NSARVDSILIQLMKK-------------HAPEIAKKLENNNAAATGTTGPEDPAIKREND 230
Query: 243 QG--PAKRMKI 251
G AKR K+
Sbjct: 231 AGAEAAKRQKV 241
>gi|340714171|ref|XP_003395605.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 1 [Bombus terrestris]
gi|340714173|ref|XP_003395606.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 2 [Bombus terrestris]
Length = 229
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ N I DYF+ FYDRTCNNE ++M+ + P QL MTG+
Sbjct: 14 GLSWHDSAWIPV--LNPNNIMDYFSERSNPFYDRTCNNEIVKMQRLSP---DQLQNMTGL 68
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V P L+VIRKQ R P P+ YY++ G +YQAP L +V S+R+ +H++
Sbjct: 69 EYILLHVQAPILYVIRKQHRHTPTLAAPLADYYIIAGVVYQAPDLASVVSSRLLSTVHHL 128
Query: 145 QKAFTTAASKLE----KIGYVDAENDGGTPLHSKAGKET------IDLKEVKRVDQILAS 194
Q AF A+S K Y D +N A KET L + +RVD +LA
Sbjct: 129 QSAFEEASSCSRYHPSKGYYWDFKNGKAM----AAKKETPVREEPSSLFQRQRVDMLLAE 184
Query: 195 LQRKLPPAPPPPPFPEGYAP 214
L RK P P P P + P
Sbjct: 185 LTRKF-PLPVPKPVHQAIEP 203
>gi|432107100|gb|ELK32523.1| Mediator of RNA polymerase II transcription subunit 6 [Myotis
davidii]
Length = 351
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 19/243 (7%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSK 80
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++
Sbjct: 113 NNLLGISWVDSTWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQ 167
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
M G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A
Sbjct: 168 MVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTA 227
Query: 141 LHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
+H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 228 VHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKTKRKEEPSSIFQRQRVDALLL 287
Query: 194 SLQRKLPPAPPPPPFPEGYAP-PQT-EEAEKDPETQQTAEPQPPAI--DPIIDQG-PAKR 248
L++K PP E P QT +EAE PET ++ E + + +G P KR
Sbjct: 288 DLRQKFPPKFVQQKSGEKPVPVDQTKKEAEPTPETVKSDEKETTKNIQQTVSTKGPPEKR 347
Query: 249 MKI 251
M++
Sbjct: 348 MRL 350
>gi|62896733|dbj|BAD96307.1| mediator of RNA polymerase II transcription, subunit 6 homolog
[Homo sapiens]
Length = 246
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 124/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKGTTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|126282430|ref|XP_001368585.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Monodelphis domestica]
Length = 246
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSSTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDQEEQDKAKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P PE +TEE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKPGEKPVPVDQTKKEPEPTPEAI---KTEEKETPKNVQQTTSTKCP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|426234243|ref|XP_004011106.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Ovis aries]
Length = 279
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 42 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 96
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 97 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 156
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E K +E + + +RVD +L
Sbjct: 157 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 216
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 217 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETTKNVQQTVGTKGP----- 271
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 272 ----PEKRMRL 278
>gi|291222624|ref|XP_002731302.1| PREDICTED: mediator of RNA polymerase II transcription, subunit 6
homolog [Saccoglossus kowalevskii]
Length = 275
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 105/183 (57%), Gaps = 14/183 (7%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
+ + D W+ L+ + + DYF+ FYDRTCNNE ++M+ ++P QL++MTGIE
Sbjct: 27 LSWYDSAWIPV--LNPSNVMDYFSERSNPFYDRTCNNEVVKMQRLNP---EQLNQMTGIE 81
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y+L V EP L+VIRKQ R P+ VTP+ YY++ G ++QAP LC+V +AR+ A H IQ
Sbjct: 82 YILLHVQEPILYVIRKQLRHSPQNVTPLANYYIIAGIVHQAPDLCSVLNARMLTATHNIQ 141
Query: 146 KAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 198
+F A SK + ++E +K +E + +RVD +L L +K
Sbjct: 142 SSFNEARSYSRYYPSKGYWWEFKESEQADKAKKKNKTKEEPSSFFQRQRVDVLLGELAKK 201
Query: 199 LPP 201
PP
Sbjct: 202 YPP 204
>gi|77735433|ref|NP_001029409.1| mediator of RNA polymerase II transcription subunit 6 [Bos taurus]
gi|122140305|sp|Q3SZY9.1|MED6_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|74268344|gb|AAI02649.1| Mediator complex subunit 6 [Bos taurus]
gi|296482947|tpg|DAA25062.1| TPA: mediator of RNA polymerase II transcription subunit 6 [Bos
taurus]
Length = 246
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>gi|348573316|ref|XP_003472437.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Cavia porcellus]
Length = 246
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLVD 183
Query: 195 LQRKLPPAPPPPPFPEGYAP-PQT-EEAEKDPETQQTAEPQ 233
L+++ PP E P QT +EAE PET ++ E +
Sbjct: 184 LRQRFPPKFVQQKSGEKPIPVDQTKKEAEPIPETVKSEEKE 224
>gi|449274692|gb|EMC83770.1| Mediator of RNA polymerase II transcription subunit 6, partial
[Columba livia]
Length = 238
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 122/260 (46%), Gaps = 55/260 (21%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ + + L++M
Sbjct: 1 NLLGISWVDSSWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQR---MTLEHLNQM 55
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V PM YY++ G IYQAP L +V ++R+ A+
Sbjct: 56 VGVEYILLHAQEPILFIIRKQQRQSPTQVMPMADYYIIAGVIYQAPDLGSVINSRVLTAV 115
Query: 142 HYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETI-------------DLKEVKRV 188
H IQ AF A S Y G H K +E + + +RV
Sbjct: 116 HGIQSAFEEAMS------YCRYHPSKGYWWHFKDQEEREKAKPKAKKKEEPSSIFQRQRV 169
Query: 189 DQILASLQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAE 231
D +L L++K PP P P PE P EE E QQ+A
Sbjct: 170 DALLLDLRQKFPPRFVQQKPGEKPIPVDQIKKEPEPAPEAVKP---EEKETVKNAQQSAG 226
Query: 232 PQPPAIDPIIDQGPAKRMKI 251
+ P P KRM++
Sbjct: 227 TKGP---------PEKRMRL 237
>gi|326920590|ref|XP_003206552.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Meleagris gallopavo]
Length = 293
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ + + L++M
Sbjct: 56 NLLGISWVDSAWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQR---MTLDHLNQM 110
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 111 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 170
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 171 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEEREKAKPKAKKKEEPSSIFQRQRVDALLLD 230
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P PE +TEE E QQ+A + P
Sbjct: 231 LRQKFPPKFVQQKPGEKPIPVDQIKKEPEPAPEAV---KTEEKETVKNAQQSAAAKGP-- 285
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 286 -------PEKRMRL 292
>gi|226874947|ref|NP_001152897.1| mediator of RNA polymerase II transcription subunit 6 [Gallus
gallus]
Length = 246
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 124/254 (48%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ + + L++M
Sbjct: 9 NLLGISWVDSAWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQR---MTLDHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEEREKAKPKAKKKEEPSSIFQRHRVDALLLD 183
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P PE +TEE E QQ+A + P
Sbjct: 184 LRQKFPPRFVQQKPGEKPIPVDQIKKEPEPAPEAV---KTEEKETVKNAQQSAAAKGP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|307176282|gb|EFN65913.1| Mediator of RNA polymerase II transcription subunit 6 [Camponotus
floridanus]
Length = 229
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 16/224 (7%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ + I DYF+ FYDRTCNNE ++M+ + P QL+ MTG+
Sbjct: 14 GLSWHDSAWIPV--LNPSNIMDYFSERSNPFYDRTCNNEIVKMQRLSP---DQLNNMTGL 68
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R P +P+ YY++ G +YQAP L +V S+R+ +H++
Sbjct: 69 EYILLHVQEPILYVIRKQHRHSPTVASPVADYYIIAGVVYQAPDLGSVVSSRLLSTVHHL 128
Query: 145 QKAFTTAASKLE---KIGYVDAENDG---GTPLHSKAGKETIDLKEVKRVDQILASLQRK 198
Q AF A++ GY +G T + +E L + +RVD +L L RK
Sbjct: 129 QSAFEEASNCSRYHPSKGYFWDFKNGKALATKKETPVREEPSSLFQRQRVDMLLTELTRK 188
Query: 199 LPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIID 242
P P P P A + E +++ +T++ PP P +
Sbjct: 189 F---PLPVPKPVHQATEVSTEIKQEVKTEKKDMKPPPEKKPRVS 229
>gi|391333981|ref|XP_003741388.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Metaseiulus occidentalis]
Length = 270
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 12/190 (6%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
GI + D W+N LD + + +YF+ + FYDRTCNNE +RM+ + P ++ MTG+
Sbjct: 22 GISWHDSAWINV--LDGSNVLEYFSDRSNPFYDRTCNNETVRMQRLDP---EVMNDMTGL 76
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V +P L++IRKQ R +VTP YYVL G +YQAP L ++R+ ++++
Sbjct: 77 EYILLHVQDPILYIIRKQHRHSRTQVTPQADYYVLAGVVYQAPDLNTALNSRLLSTVYHL 136
Query: 145 QKAF--TTAASKLE-KIGYVDAENDGGTPLHSKAG--KETIDLKEVKRVDQILASLQRKL 199
Q AF T + S+ GY P KA KE L + +RVD +L L R+
Sbjct: 137 QGAFEQTHSFSRYHPSRGYWWDFGKEEDPQKDKASDQKENGSLFQRRRVDLLLGELARRF 196
Query: 200 PPAPPPPPFP 209
PP P P
Sbjct: 197 PPKIAAPAQP 206
>gi|327288458|ref|XP_003228943.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Anolis carolinensis]
Length = 245
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 124/250 (49%), Gaps = 36/250 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSAWIPI--LNSGSVLDYFSERSNPFYDRTCNNEMVKMQR---LTLDHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVVNSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEERDKAKPKAKKKEEPSSIFQRHRVDSLLLD 183
Query: 195 LQRKLPP-------APPPPPFPEGYAP---PQT---EEAEKDPETQQTAEPQPPAIDPII 241
L+ K PP P P + P P+T EE E TQQ+ + P
Sbjct: 184 LRNKFPPKFVQQKQGEKPIPVDQIKEPEPAPETVKQEEKESAKTTQQSTSTKAP------ 237
Query: 242 DQGPAKRMKI 251
P KRM++
Sbjct: 238 ---PEKRMRL 244
>gi|332026699|gb|EGI66808.1| Mediator of RNA polymerase II transcription subunit 6 [Acromyrmex
echinatior]
Length = 230
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 107/189 (56%), Gaps = 16/189 (8%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ + I DYF+ FYDRTCNNE ++M+ + P QL+ MTG+
Sbjct: 15 GLSWHDSAWIPV--LNPSNIMDYFSERSNPFYDRTCNNEIVKMQRLSP---DQLNNMTGL 69
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R P + + + YY++ G +YQAP L +V S+R+ +H++
Sbjct: 70 EYILLHVQEPILYVIRKQLRHSPTQASAVADYYIIAGVVYQAPDLGSVVSSRLLSTVHHL 129
Query: 145 QKAFTTAASKLE---KIGYVDAENDGGTPLHSK----AGKETIDLKEVKRVDQILASLQR 197
Q AF A+S GY + G L +K +E L + +RVD +LA L R
Sbjct: 130 QSAFDEASSCSRYHPSKGY-SWDFKNGKALAAKKETPVREEPSSLFQRQRVDMLLAELTR 188
Query: 198 KLP-PAPPP 205
K P P P P
Sbjct: 189 KFPLPMPKP 197
>gi|322801480|gb|EFZ22141.1| hypothetical protein SINV_10332 [Solenopsis invicta]
Length = 230
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 104/188 (55%), Gaps = 14/188 (7%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ + I DYF+ FYDRTCNNE ++M+ + P QL+ MTG+
Sbjct: 19 GLSWHDSAWIPV--LNPSNIMDYFSERSNPFYDRTCNNEIVKMQRLSP---DQLTNMTGL 73
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R P +P+ YY++ G +YQAP L +V S+R+ +H++
Sbjct: 74 EYILLHVQEPILYVIRKQHRHSPTLASPVADYYIIAGVVYQAPDLGSVVSSRLLSTVHHL 133
Query: 145 QKAFTTA---ASKLEKIGYVDAENDGGTPLHSK---AGKETIDLKEVKRVDQILASLQRK 198
Q AF A A GY +G K +E L + +RVD +LA L RK
Sbjct: 134 QSAFDEARECARYHPSKGYSWDFKNGKAMAAKKELPVREEPSSLFQRQRVDMLLAELTRK 193
Query: 199 LP-PAPPP 205
P P P P
Sbjct: 194 FPLPVPKP 201
>gi|355702053|gb|AES01804.1| mediator complex subunit 6 [Mustela putorius furo]
Length = 202
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 8 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 62
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 63 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 122
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 123 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 182
Query: 195 LQRKLPP 201
L++K PP
Sbjct: 183 LRQKFPP 189
>gi|296215410|ref|XP_002754107.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 2 [Callithrix jacchus]
Length = 253
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 125/258 (48%), Gaps = 44/258 (17%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVNLFF 123
Query: 139 ----RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 124 FYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQR 183
Query: 188 VDQILASLQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQ 233
VD +L L++K PP P P + A P ++EE E QQT +
Sbjct: 184 VDALLVDLRQKFPPRFVQQKSGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVSAK 243
Query: 234 PPAIDPIIDQGPAKRMKI 251
P P KRM++
Sbjct: 244 AP---------PEKRMRL 252
>gi|74152816|dbj|BAE42663.1| unnamed protein product [Mus musculus]
Length = 220
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRKLPP 201
L++K PP
Sbjct: 184 LRQKFPP 190
>gi|196006716|ref|XP_002113224.1| hypothetical protein TRIADDRAFT_16220 [Trichoplax adhaerens]
gi|190583628|gb|EDV23698.1| hypothetical protein TRIADDRAFT_16220, partial [Trichoplax
adhaerens]
Length = 185
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 17/185 (9%)
Query: 28 ICFRDQLWL-NTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
I ++D W+ N P + + DYF+ FYDRTCNNE ++M+ L+ S+L +TGI
Sbjct: 3 ISWQDSNWIPNLTP---DNVLDYFSQRSNPFYDRTCNNEVIKMQR---LEASRLKSLTGI 56
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY L V +P L++IRKQ R P +VTP+ YYVL G +YQAP L +V ++R+ AL++I
Sbjct: 57 EYDLIHVQDPILYIIRKQHRHSPTEVTPLAEYYVLAGVVYQAPDLASVLNSRLLSALYHI 116
Query: 145 QKAFTTAA--SKLE--KIGYVDAENDGGT----PLHSKAGKETIDLKEVKRVDQILASLQ 196
Q A+ A S+ E K Y + E G T P S + + L + K+VD +L
Sbjct: 117 QSAYNEAMSYSRFEAGKDYYWEFEKKGITSPRRPSSSNRHELSSTLFQRKKVDAVLTDFS 176
Query: 197 RKLPP 201
+K PP
Sbjct: 177 KKFPP 181
>gi|114653734|ref|XP_001146137.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 2 [Pan troglodytes]
gi|397507351|ref|XP_003824161.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 2 [Pan paniscus]
gi|426377354|ref|XP_004055431.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 2 [Gorilla gorilla gorilla]
Length = 253
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 125/258 (48%), Gaps = 44/258 (17%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVNLFS 123
Query: 139 ----RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 124 FYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQR 183
Query: 188 VDQILASLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQ 233
VD +L L++K PP P P P E P+T EE E QQT +
Sbjct: 184 VDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAK 243
Query: 234 PPAIDPIIDQGPAKRMKI 251
P P KRM++
Sbjct: 244 GP---------PEKRMRL 252
>gi|355778704|gb|EHH63740.1| hypothetical protein EGM_16768, partial [Macaca fascicularis]
Length = 246
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 125/258 (48%), Gaps = 44/258 (17%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 2 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 56
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 57 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVNLFS 116
Query: 139 ----RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 117 FFKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQR 176
Query: 188 VDQILASLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQ 233
VD +L L++K PP P P P E P+T EE E QQT +
Sbjct: 177 VDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVSAK 236
Query: 234 PPAIDPIIDQGPAKRMKI 251
P P KRM++
Sbjct: 237 GP---------PEKRMRL 245
>gi|395857435|ref|XP_003801099.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 3 [Otolemur garnettii]
Length = 253
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 125/261 (47%), Gaps = 50/261 (19%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR-- 139
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVNSFS 123
Query: 140 -----ALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 124 FHKLTAVHGIQSAFDEAVSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQR 183
Query: 188 VDQILASLQRKLPP---------APPP--------PPFPEGYAPPQTEEAEKDPETQQTA 230
VD +L L++K PP P P P PE ++EE E QQT
Sbjct: 184 VDALLVDLRQKFPPRFVQQKSGEKPVPVDQTKKETEPIPETI---KSEEKETTKNVQQTV 240
Query: 231 EPQPPAIDPIIDQGPAKRMKI 251
+ P P KRM++
Sbjct: 241 NVKGP---------PGKRMRL 252
>gi|194390840|dbj|BAG62179.1| unnamed protein product [Homo sapiens]
Length = 253
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 125/258 (48%), Gaps = 44/258 (17%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVSLFS 123
Query: 139 ----RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 124 FYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQR 183
Query: 188 VDQILASLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQ 233
VD +L L++K PP P P P E P+T EE E QQT +
Sbjct: 184 VDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAK 243
Query: 234 PPAIDPIIDQGPAKRMKI 251
P P KRM++
Sbjct: 244 GP---------PEKRMRL 252
>gi|335772530|gb|AEH58097.1| mediator of RNA polymerase II transcriptio subunit 6-like protein
[Equus caballus]
Length = 201
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP 201
L++K PP
Sbjct: 184 LRQKFPP 190
>gi|328869781|gb|EGG18158.1| putative mediator complex subunit 6 [Dictyostelium fasciculatum]
Length = 251
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+T I +RD LWL +PL++ + YF++S FYD+ CNNE L+M+ + P S L M G
Sbjct: 22 DLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDP---SALKTMVG 78
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
IEY + EP LF+I +Q R+ P V YY+++GSIYQAP L V ++R+ ++L++
Sbjct: 79 IEYQVINYQEPSLFLIARQYRESPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYH 138
Query: 144 IQKAFTTAAS 153
+++AF S
Sbjct: 139 LRQAFDKIGS 148
>gi|344245776|gb|EGW01880.1| Mediator of RNA polymerase II transcription subunit 6 [Cricetulus
griseus]
Length = 191
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 104/187 (55%), Gaps = 14/187 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 2 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 56
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 57 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 116
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 117 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQRVDALLVD 176
Query: 195 LQRKLPP 201
L++K PP
Sbjct: 177 LRQKFPP 183
>gi|62858787|ref|NP_001016292.1| mediator complex subunit 6 [Xenopus (Silurana) tropicalis]
gi|189442489|gb|AAI67413.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) [Xenopus (Silurana) tropicalis]
Length = 246
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 25/245 (10%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNNGTVLDYFSERSNPFYDRTCNNEVVKMQR---LTLDHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E T +K +E + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDQEERDKTKPKAKKKEEASSHFQRQRVDALLME 183
Query: 195 LQRKLPPAPPPPPFPEGYAPPQTEEAEKDP--ETQQTAEPQPPAIDPIIDQG------PA 246
L++K PP E P + + E +P ET + E +P + QG P
Sbjct: 184 LRQKFPPKFIQQKTGEKPVPVEQIKKEAEPPAETIKQEEKEPVK---VAQQGATPKGPPE 240
Query: 247 KRMKI 251
KRM++
Sbjct: 241 KRMRL 245
>gi|387016904|gb|AFJ50570.1| Mediator of RNA polymerase II transcription subunit 6-like
[Crotalus adamanteus]
Length = 246
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 125/254 (49%), Gaps = 43/254 (16%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEMVKMQR---LTLDHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQNPTQVIPLADYYIIAGVIYQAPDLGSVVNSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDQEERDKAKPKTKKKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPPA--------PPPP---------PFPEGYAPPQTEEAEKDPETQQTAEPQPPAI 237
L++K PP P P P PE + EE E TQQ+ + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQIKKESEPAPEAI---KQEEKEAAKTTQQSTSAKGP-- 238
Query: 238 DPIIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -------PEKRMRL 245
>gi|320167626|gb|EFW44525.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 337
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEY 86
+ F D+ WL T+PL+ + +YF+ S FYDRTCNN+ ++M+ D S L M G+EY
Sbjct: 12 ALSFFDRAWLQTWPLNEQTVLEYFSNSPFYDRTCNNQVIKMQQ---QDASHLLNMVGLEY 68
Query: 87 MLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQK 146
L EP LFVI+ Q+R+ P V + +Y+++G +YQAP L +V + R+G LH +
Sbjct: 69 ELIHKHEPELFVIQLQQRNSPTSVDRVANFYIINGVVYQAPDLYHVVNMRLGSYLHNLTH 128
Query: 147 AFTTAA 152
AF AA
Sbjct: 129 AFKEAA 134
>gi|226372192|gb|ACO51721.1| Mediator of RNA polymerase II transcription subunit 6 [Rana
catesbeiana]
Length = 246
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 21/243 (8%)
Query: 24 DMTGICFRDQLWLNTYPLDRNM-IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSK 80
++ GI + D W+ P+ N+ + DYF+ FYDRTCNNE ++M+ L + L++
Sbjct: 9 NLLGISWVDSAWI---PILNNVTVLDYFSERSNPFYDRTCNNEVVKMQR---LTLDHLNQ 62
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+L EP LF+IRKQ+R P + P+ YY++ G IYQAP L +V ++R+ A
Sbjct: 63 MTGVEYILLHAQEPILFIIRKQQRQTPTQAIPLADYYIIAGVIYQAPDLGSVINSRLLTA 122
Query: 141 LHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
+H IQ AF A SK + D E +K +E + +RVD +L
Sbjct: 123 VHGIQSAFDEAMSYCRYHPSKGYWWHFKDQEERDKAKPKAKKKEEASSFFQRQRVDALLL 182
Query: 194 SLQRKLPP-----APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
L++K PP P P P + E + Q+ EP PA P KR
Sbjct: 183 DLRQKFPPKVVQQKPGEKPVPVEQIKKEQEPPAEVVVKQEEKEPVKPAQGATPKGPPEKR 242
Query: 249 MKI 251
M++
Sbjct: 243 MRL 245
>gi|242021515|ref|XP_002431190.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212516439|gb|EEB18452.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 237
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 17/215 (7%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ + + DYF+ + F+DR CNNE ++M+ ++P QL+ MTG+
Sbjct: 13 GLSWHDSAWVPI--LNPSNVMDYFSERTNPFFDRACNNELVKMQRLNP---EQLNNMTGL 67
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R P + TP+ YY++ G +YQAP L +V ++R+ +H++
Sbjct: 68 EYILLHVQEPILYVIRKQHRHSPTQATPLADYYIVAGIVYQAPDLASVINSRLLSTVHHL 127
Query: 145 QKAFTTAASKLE---KIGYV----DAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQR 197
Q A ++S GY D + E L + +RVD +L L R
Sbjct: 128 QSALEESSSYSRYHPSKGYTWDFKDKKFSEKKEKKELTKTEPSSLFQRQRVDMLLNELTR 187
Query: 198 KLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEP 232
K PP P PP + P Q E +++P+T+ EP
Sbjct: 188 KYPP-PRPPGIVQAQQPEQ--EIKQEPKTEIKTEP 219
>gi|350539359|ref|NP_001232614.1| putative mediator of RNA polymerase II transcription subunit 6
homolog [Taeniopygia guttata]
gi|197127680|gb|ACH44178.1| putative mediator of RNA polymerase II transcription subunit 6
homolog [Taeniopygia guttata]
Length = 245
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 34/238 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ + + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNNGSVLDYFSERSNPFYDRTCNNEVVKMQR---MTLDHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVMPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E T +K +E + + +RVD +L
Sbjct: 124 HGIQSAFEEAMSYCRYHPSKGYWWHFKDEEEREKTKPKAKKKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----------------APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPP 235
L++K PP P P PE +TEE E Q PP
Sbjct: 184 LRQKFPPRFVQQKPGEKPIPVDQIKKEPEPVPEAV---KTEEKETVKNAQSAGAKGPP 238
>gi|351708657|gb|EHB11576.1| Mediator of RNA polymerase II transcription subunit 6
[Heterocephalus glaber]
Length = 289
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 23/228 (10%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 45 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 99
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 100 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVNFFS 159
Query: 139 ----RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKR 187
A+H IQ AF A SK + D E +K +E + + +R
Sbjct: 160 FYKLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQRQR 219
Query: 188 VDQILASLQRKLPPAPPPPPFPEGYAP-PQT-EEAEKDPETQQTAEPQ 233
VD +L L++K PP E P QT +EAE PET ++ E +
Sbjct: 220 VDALLVDLRQKFPPKFVQQKSGEKPVPVDQTKKEAEPTPETIKSEEKE 267
>gi|389612090|dbj|BAM19570.1| mediator complex subunit 6 [Papilio xuthus]
Length = 285
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 23/192 (11%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L + I DYF+ F+DRTCNNE ++M+ L + QL MTG+
Sbjct: 18 GLSWHDSAWIPL--LTPSNIMDYFSEKSNPFFDRTCNNEVVKMQR---LSMDQLQNMTGL 72
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V +P L+VIRKQ+R P+ V P+ YY++ G +YQAP L +V ++R+ A+H++
Sbjct: 73 EYILLHVQDPILYVIRKQQRHSPQHVIPLADYYIIAGIVYQAPDLASVLNSRLLSAVHHL 132
Query: 145 QKAF--TTAASKLE-KIGY---VDAENDGGTPLHSKAG----------KETIDLKEVKRV 188
Q +F T SK GY A G +P +S +E L + +RV
Sbjct: 133 QCSFEETMMYSKYHPSKGYWWDFKANKAGSSPFNSAQSAPKEVSTGPKEEPSTLFQRQRV 192
Query: 189 DQILASLQRKLP 200
D +LA L R+ P
Sbjct: 193 DMLLAELVRQFP 204
>gi|119114298|ref|XP_319180.3| AGAP010034-PA [Anopheles gambiae str. PEST]
gi|158563990|sp|Q7Q107.3|MED6_ANOGA RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|116118349|gb|EAA14057.3| AGAP010034-PA [Anopheles gambiae str. PEST]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
I + D W+ L+ + DYF+ FYDRTCNNE +RM+ + L+ MTG+E
Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVE 73
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y+ V +P L+VIRKQ R P + TPM YY++ G++YQAP L +VF++RI +H++Q
Sbjct: 74 YIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQ 133
Query: 146 KAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
AF A+S GY + + T + +E + + +RVD +L
Sbjct: 134 TAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLG 193
Query: 194 SLQRKLP-PAPPPPPFPEGYAPPQTEEAEKD 223
L RK P P P P G P T A +
Sbjct: 194 DLLRKFPLPLPQMTNNPTGGNPSDTANASNN 224
>gi|413952663|gb|AFW85312.1| hypothetical protein ZEAMMB73_823282 [Zea mays]
Length = 82
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Query: 4 PPPGANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNE 63
PPPG +GA A PPPGTDMTGICFRDQLWL+TYPLDRN++FDYF LS FYD TCNNE
Sbjct: 7 PPPGP--DGAV-ALLPPPGTDMTGICFRDQLWLDTYPLDRNLVFDYFALSPFYDITCNNE 63
Query: 64 QLRMRSIHPLDISQLSKMT 82
LR R IHPLD+S L+ T
Sbjct: 64 SLRSRQIHPLDMSHLTYNT 82
>gi|195110998|ref|XP_002000066.1| GI24883 [Drosophila mojavensis]
gi|193916660|gb|EDW15527.1| GI24883 [Drosophila mojavensis]
Length = 253
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ L + L M G+EY+L V EP L+VIRKQ
Sbjct: 32 VMDYFCRKSNPFYDHMCNNETIRMQR---LGVEHLHNMLGMEYILLHVAEPILYVIRKQH 88
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS---------- 153
R P + TP+ YY++ G++YQAP L NV +ARI + +Q AF A+S
Sbjct: 89 RHNPSEATPIADYYIIGGTVYQAPDLANVINARILNTVVNLQSAFEEASSYARYHPNKGY 148
Query: 154 ----KLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPPPPFP 209
K+ ++ND P +K L + +RVD +LA L RK PP P PP
Sbjct: 149 YWDFSSNKVLSDKSKNDKKDPNAAKDDNSGT-LFQKQRVDMLLAELLRKFPP-PIPPMLQ 206
Query: 210 EGYAPPQTEEAEKDPETQQTAEPQPPAIDPI 240
P Q + +AE AI P+
Sbjct: 207 NLQQPLQVASGAEGSMGANSAENH--AIGPL 235
>gi|91087181|ref|XP_975417.1| PREDICTED: similar to AGAP010034-PA [Tribolium castaneum]
Length = 250
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 20/198 (10%)
Query: 13 APPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSI 70
P A P P + + D W+ L+ + DYF+ F+DRTCNNE ++M+ +
Sbjct: 11 VPGAIPENP----LSLSWHDSAWIPI--LNTANVMDYFSERSNPFFDRTCNNEIVKMQRL 64
Query: 71 HPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLC 130
P QL MTG+EY+L V EP L+VIRKQ R P++VTP+ YY++ G +YQAP L
Sbjct: 65 TP---DQLQNMTGLEYVLLHVQEPILYVIRKQHRHSPQQVTPLADYYIIAGVVYQAPDLA 121
Query: 131 NVFSARIGRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKET-----ID 181
+V ++R+ A+H++Q +F AS GY D ++ T +K+ E
Sbjct: 122 SVLNSRLLSAVHHLQSSFEEVASFARYHPSKGYSWDFKSQKNTTDKAKSKDEKPREEPSS 181
Query: 182 LKEVKRVDQILASLQRKL 199
L + +RVD +L L +K
Sbjct: 182 LFQRQRVDMLLGELIKKF 199
>gi|440912054|gb|ELR61661.1| Mediator of RNA polymerase II transcription subunit 6, partial [Bos
grunniens mutus]
Length = 251
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 124/261 (47%), Gaps = 47/261 (18%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 4 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 58
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG--- 138
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 59 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVVIQN 118
Query: 139 -------RALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKE 184
A+H IQ AF A SK + D E K +E + +
Sbjct: 119 WFSLYQLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQ 178
Query: 185 VKRVDQILASLQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTA 230
+RVD +L L++K PP P P + A P ++EE E QQT
Sbjct: 179 RQRVDALLLDLRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTV 238
Query: 231 EPQPPAIDPIIDQGPAKRMKI 251
+ P P KRM++
Sbjct: 239 GTKGP---------PEKRMRL 250
>gi|50344822|ref|NP_001002084.1| mediator of RNA polymerase II transcription subunit 6 [Danio rerio]
gi|82184956|sp|Q6IQ63.1|MED6_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|48735172|gb|AAH71547.1| Mediator complex subunit 6 [Danio rerio]
Length = 254
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + + +YF+ FYDRTCNNE ++M+ + L+++
Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQL 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+
Sbjct: 64 VGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E SK +E L + +RVD +L
Sbjct: 124 HGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLD 183
Query: 195 LQRKLPPA 202
L+ K PP
Sbjct: 184 LRNKFPPT 191
>gi|72111294|ref|XP_787850.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Strongylocentrotus purpuratus]
Length = 312
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
I + D W+ L++ I DYF+ FYDRTCNNE ++M+ + P QL MTG+E
Sbjct: 10 ISWHDSAWIP--HLNQANIMDYFSNRSNPFYDRTCNNEIIKMQRLSP---EQLKSMTGLE 64
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y+L V EP L+V+RKQ R E+ TP+ YY++ G +YQAP +C V +AR+ A+H I+
Sbjct: 65 YILLHVQEPILYVVRKQHRHSLEESTPLADYYIVAGRVYQAPDICAVINARMTTAVHNIR 124
Query: 146 KAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 198
AF + SK + + +++ K +E + KRVD +L L RK
Sbjct: 125 SAFEESLSYSRYHPSKGYWWEFKEKDSETEKKKRKKPKEELSSAFQRKRVDILLGDLSRK 184
Query: 199 LP-----PAPPPPPFP 209
P P P P P
Sbjct: 185 FPFKVIQPKPGDRPVP 200
>gi|387593258|gb|EIJ88282.1| hypothetical protein NEQG_01726 [Nematocida parisii ERTm3]
gi|387596030|gb|EIJ93652.1| hypothetical protein NEPG_01224 [Nematocida parisii ERTm1]
Length = 163
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH----PLDISQLSK 80
M CFRD LWL L R+ + +YF+ S FYDR CNNE L+M++IH LDI L+K
Sbjct: 1 MENTCFRDALWLQENILSRDTLMEYFSYSQFYDRNCNNEVLKMQNIHRNNDSLDIF-LTK 59
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
M GI+Y+++ +EP LF+I+K R P+K+ + +YV++G+IYQ+P VFS R
Sbjct: 60 MCGIQYIITYAIEPTLFIIKKCNRISPDKINVLDYFYVMNGTIYQSPTEKEVFSTRYTNI 119
Query: 141 L 141
L
Sbjct: 120 L 120
>gi|260831182|ref|XP_002610538.1| hypothetical protein BRAFLDRAFT_202253 [Branchiostoma floridae]
gi|229295905|gb|EEN66548.1| hypothetical protein BRAFLDRAFT_202253 [Branchiostoma floridae]
Length = 246
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
I + D W+ L + DYF+ FYD++CNNE ++M+ + P QL+ MTG+
Sbjct: 5 SISWHDSAWIPM--LSPANVLDYFSERTNPFYDKSCNNEIIKMQRLSP---EQLNNMTGM 59
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L EP L+V+RKQ R ++VTP+ YY++ G +YQAP L +V ++R+ +LH I
Sbjct: 60 EYILLHAQEPILYVVRKQHRHSQQQVTPLADYYIIAGVVYQAPDLYSVLNSRLLTSLHNI 119
Query: 145 QKAFTTAASKLE---KIGYV-------DAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
Q AF A S GY D + +GG K +E + +RVD +L
Sbjct: 120 QSAFDEALSYSRYHPSKGYWWEFKDKEDKKREGGK----KKPEEMSSAFQRQRVDMLLGE 175
Query: 195 LQRKLPP 201
L K PP
Sbjct: 176 LADKFPP 182
>gi|410897815|ref|XP_003962394.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Takifugu rubripes]
Length = 246
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 36/254 (14%)
Query: 25 MTGICFRDQL----WLNTY---PLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDI 75
M FRD L W+++ L+ + DYF+ FYDRTCNNE ++M+ L +
Sbjct: 1 MAAGDFRDNLLGISWVDSSLVPILNPGNVLDYFSERSNPFYDRTCNNEVVKMQR---LTL 57
Query: 76 SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSA 135
L++M G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L V S+
Sbjct: 58 EHLNQMVGVEYILLHAQEPILYIIRKQQRQSPTQVIPISDYYIIAGVVYQAPDLGTVISS 117
Query: 136 RIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRV 188
R+ A+H IQ AF A SK + D E +K +E L + RV
Sbjct: 118 RVLSAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDQEEREKNKPKTKKKEEPSSLFQRHRV 177
Query: 189 DQILASLQRKLPPA-----PPPPPFP-----EGYAPPQ-TEEAEKDPETQQTAEPQPPAI 237
D +L L+ K PP P P P E AP + ++ E++P T ++A P P+
Sbjct: 178 DTLLLDLRSKFPPTFYQPKPGEKPIPVEVKKEPEAPTEVVKQEEREPGT-KSAAPAAPSK 236
Query: 238 DPIIDQGPAKRMKI 251
P P KR ++
Sbjct: 237 QP-----PEKRARL 245
>gi|348515967|ref|XP_003445511.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Oreochromis niloticus]
Length = 246
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 31/200 (15%)
Query: 25 MTGICFRDQL----WL--NTYP-LDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDI 75
M + FRD L W+ N P L+ + +YF+ + FYDRTCNNE ++M+ L +
Sbjct: 1 MASVDFRDNLLGISWVDSNWVPGLNPGNVLEYFSDRSNPFYDRTCNNEVVKMQR---LTV 57
Query: 76 SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSA 135
L++M G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L V S+
Sbjct: 58 DHLNQMVGVEYILLHAQEPILYIIRKQQRQSPTQVVPLADYYIIAGVVYQAPDLGTVISS 117
Query: 136 RIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETI-------------DL 182
R+ A+H IQ AF A S Y G H K +E L
Sbjct: 118 RVLSAVHGIQSAFDEAMS------YCRYHPSKGYWWHFKDHEEREKAKPKTKKKEEPSSL 171
Query: 183 KEVKRVDQILASLQRKLPPA 202
+ RVD +L L+ K PP
Sbjct: 172 FQRHRVDTLLLDLRSKFPPT 191
>gi|195055702|ref|XP_001994752.1| GH14337 [Drosophila grimshawi]
gi|193892515|gb|EDV91381.1| GH14337 [Drosophila grimshawi]
Length = 255
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 95/175 (54%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ L + L M G+EY+L V EP L+VIRKQ
Sbjct: 32 VMDYFCRKSNPFYDHMCNNETIRMQR---LGVEHLHNMLGLEYILLHVAEPILYVIRKQH 88
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G+IY+AP L NV +AR+ + +Q AF A+S GY
Sbjct: 89 RHNPAEATPIADYYIIGGTIYKAPDLANVINARVLNTVVNLQSAFEEASSYARYHPNKGY 148
Query: 161 V-DAENDGGTPLHSKAGKE----TID-----LKEVKRVDQILASLQRKLPPAPPP 205
D ++ SKA K+ T D L + +RVD +LA L RK PP PP
Sbjct: 149 TWDFSSNKILSDKSKADKKDSSATKDDSSGTLFQKQRVDMLLAELLRKFPPPIPP 203
>gi|195391831|ref|XP_002054563.1| GJ24525 [Drosophila virilis]
gi|194152649|gb|EDW68083.1| GJ24525 [Drosophila virilis]
Length = 258
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ L + L M G+EY+L V EP L+VIRKQ
Sbjct: 32 VMDYFCRKSNPFYDHMCNNETIRMQR---LGVEHLHNMLGMEYILLHVAEPILYVIRKQH 88
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+S GY
Sbjct: 89 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEASSYARYHPNKGY 148
Query: 161 --------VDAENDGGTPLHSKAGKE--TIDLKEVKRVDQILASLQRKLPPAPPPPPFPE 210
V ++ S A K+ + L + +RVD +LA L RK P PP PP +
Sbjct: 149 TWDFSSNKVLSDKTKSDKKDSNAAKDDNSGTLFQKQRVDMLLAELLRKFP--PPIPPMLQ 206
Query: 211 GYAPP 215
+ P
Sbjct: 207 NFQQP 211
>gi|241149340|ref|XP_002406081.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215493804|gb|EEC03445.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 281
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L QLS+MTG+
Sbjct: 74 GISWHDTAWIQA--LEPGNVMDYFSERSNPFYDRTCNNEIVKMQR---LSADQLSQMTGL 128
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L EP L+V+RKQ R P +VTP+ YYVL G +YQAP L V ++R+ H +
Sbjct: 129 EYILLHAQEPILYVVRKQHRHSPSQVTPLADYYVLAGVVYQAPDLGAVLNSRLLATAHRL 188
Query: 145 QKAFTTAASKLEKI---GYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPP 201
Q A + S GY DG A + + +RVD +LA L PP
Sbjct: 189 QAALDESLSFARYHPFRGYWWQFPDGRPQPKPPAKHAPGSIFQRRRVDLLLAELAANFPP 248
Query: 202 APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQP 234
Q EEA K Q+T P+P
Sbjct: 249 K-------------QHEEAAK----QETPAPRP 264
>gi|340375943|ref|XP_003386493.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Amphimedon queenslandica]
Length = 246
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 17/184 (9%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
+ + D+ W+ L+++ I DYF+ FYDRTCNNE +RM+ P S L MTGIE
Sbjct: 9 MSWHDRSWIPN--LNQDNIMDYFSQRSNPFYDRTCNNEVIRMQRGDP---SHLVNMTGIE 63
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y L V EP L+VI+K R PEKV P+ YYVL G +YQ P L +V ++R+ +LH I
Sbjct: 64 YSLFLVQEPVLYVIKKVHRQSPEKVIPLANYYVLGGVVYQCPDLHSVINSRLLSSLHLIH 123
Query: 146 KAFTTAASKLE---KIGYV-----DAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQR 197
+AF A S GY D+E + + SK E +++ KRVD +L L +
Sbjct: 124 QAFEEAQSYARYGPSQGYYWKFPGDSE-ETTSQTTSKTKNEPSEMQR-KRVDGLLLELIK 181
Query: 198 KLPP 201
+ PP
Sbjct: 182 QFPP 185
>gi|432936474|ref|XP_004082133.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Oryzias latipes]
Length = 246
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 29/247 (11%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FY+R+CNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWVPI--LNPGNVLDYFSERSNPFYERSCNNEVVKMQR---LSLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V P+ +Y++ G +YQAP L V S+R A+
Sbjct: 64 VGVEYILLHAQEPILYIIRKQQRQSPTQVVPLADFYIIAGVVYQAPDLGTVISSRTLSAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E SK +E L + RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWQFKDQEEKEKAKPKSKKKEELSSLFQRHRVDTLLMD 183
Query: 195 LQRKLPPA-----PPPPPFP-----EGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQG 244
L+ K PP P P P E AP +T + E+ +T+ P P + P
Sbjct: 184 LRSKFPPTFYQPKPGDKPIPVEVKKEPEAPAETVKQEERESAAKTSAPTPSSKPP----- 238
Query: 245 PAKRMKI 251
P KR ++
Sbjct: 239 PEKRARL 245
>gi|195445304|ref|XP_002070267.1| GK11125 [Drosophila willistoni]
gi|194166352|gb|EDW81253.1| GK11125 [Drosophila willistoni]
Length = 256
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G EY+L V EP L+VIRKQ
Sbjct: 39 VMDYFCRKSNPFYDHVCNNETIRMQRLGP---EHLHNMIGTEYILLHVAEPILYVIRKQH 95
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q +F A+S GY
Sbjct: 96 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSSFEEASSYARYHPNKGY 155
Query: 161 VDAENDGGTPLHSKAGKETIDLKEVK-----------RVDQILASLQRKLPPAPPP 205
+ L KA + D VK RVD +LA L RK PP PP
Sbjct: 156 T-WDFSSNKVLSDKAKADKKDSNAVKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 210
>gi|28573123|ref|NP_731403.2| mediator complex subunit 6, isoform B [Drosophila melanogaster]
gi|28573125|ref|NP_651988.2| mediator complex subunit 6, isoform A [Drosophila melanogaster]
gi|281361496|ref|NP_001163577.1| mediator complex subunit 6, isoform C [Drosophila melanogaster]
gi|281361498|ref|NP_001163578.1| mediator complex subunit 6, isoform D [Drosophila melanogaster]
gi|74932477|sp|Q8MSX2.1|MED6_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6; AltName:
Full=dMED6
gi|21428452|gb|AAM49886.1| LD15729p [Drosophila melanogaster]
gi|25012576|gb|AAN71388.1| RE38674p [Drosophila melanogaster]
gi|28381219|gb|AAF54445.2| mediator complex subunit 6, isoform A [Drosophila melanogaster]
gi|28381220|gb|AAN13445.2| mediator complex subunit 6, isoform B [Drosophila melanogaster]
gi|220942424|gb|ACL83755.1| MED6-PA [synthetic construct]
gi|272476909|gb|ACZ94874.1| mediator complex subunit 6, isoform C [Drosophila melanogaster]
gi|272476910|gb|ACZ94875.1| mediator complex subunit 6, isoform D [Drosophila melanogaster]
Length = 249
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGY 145
Query: 161 V-DAENDGGTPLHSKAGKETID---------LKEVKRVDQILASLQRKLPPAPPP 205
D ++ SK+ K+ + L + +RVD +LA L RK PP PP
Sbjct: 146 TWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 200
>gi|149025062|gb|EDL81429.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) (predicted), isoform CRA_c [Rattus norvegicus]
Length = 196
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|26354242|dbj|BAC40749.1| unnamed protein product [Mus musculus]
Length = 162
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|378755829|gb|EHY65855.1| hypothetical protein NERG_01462 [Nematocida sp. 1 ERTm2]
Length = 169
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH--PLDI-SQLSKM 81
M CFRD LWL L ++ + +YF+ S FYD+ CNNE L+M++IH D+ + LSKM
Sbjct: 1 MENTCFRDSLWLQENILTKDTVTEYFSYSQFYDKNCNNEVLKMQNIHQSAQDLETFLSKM 60
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G++Y ++ +EP LF+I+K +R PEKV + +YV++G++YQAP VFS R L
Sbjct: 61 CGVQYTITYALEPALFIIKKCERLSPEKVRVIDYFYVMNGTVYQAPTEKEVFSTRYTNIL 120
>gi|395857433|ref|XP_003801098.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 2 [Otolemur garnettii]
Length = 196
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAVS 135
>gi|213514018|ref|NP_001133481.1| Mediator of RNA polymerase II transcription subunit 6 [Salmo salar]
gi|209154180|gb|ACI33322.1| Mediator of RNA polymerase II transcription subunit 6 [Salmo salar]
gi|209733564|gb|ACI67651.1| Mediator of RNA polymerase II transcription subunit 6 [Salmo salar]
gi|303664096|gb|ADM16131.1| Mediator of RNA polymerase II transcription subunit 6 [Salmo salar]
Length = 249
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSK 80
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++
Sbjct: 9 NNLLGISWVDSGWVPI--LNPGNVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQ 63
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
M G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L V +R+ A
Sbjct: 64 MVGVEYILLHAQEPILYIIRKQQRQSPTQVIPLSDYYIIAGVVYQAPDLGTVIGSRVLSA 123
Query: 141 LHYIQKAFTTAASKLE---KIGYV-----DAENDGGTPLHSKAGKETIDLKEVKRVDQIL 192
+H +Q AF A S GY E D SK +E L + +RVD +L
Sbjct: 124 VHGVQSAFDEAMSYCRYHPSKGYWWHFKDQEERDAKAKPKSKKKEEPGSLFQRQRVDTLL 183
Query: 193 ASLQRKLPPA 202
L+ K PP
Sbjct: 184 LDLRSKFPPT 193
>gi|156400232|ref|XP_001638904.1| predicted protein [Nematostella vectensis]
gi|156226028|gb|EDO46841.1| predicted protein [Nematostella vectensis]
Length = 262
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 40/229 (17%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ + L + DYF+ FYDRTCNNE ++M+ + P + L MTGI
Sbjct: 11 GVSWHDSAWIPS--LSPTNVLDYFSQRTNPFYDRTCNNEVVKMQRLDP---ATLLSMTGI 65
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI------- 137
EY + V +P LFVIRKQ R +VTPM YY+L G +YQAP +C+V ++R+
Sbjct: 66 EYSVIHVQDPILFVIRKQHRHSATQVTPMADYYILAGIVYQAPDMCSVVNSRMPLKKNIP 125
Query: 138 ----GR---------ALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGK 177
G+ ALH Q AF A SK + + + + +
Sbjct: 126 SSCTGKETNNLFELSALHNFQSAFKEAVSYSRYHPSKGYWWQFKETQKNSKQKKEPAGNQ 185
Query: 178 ETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPET 226
ET L + + V+ +L L R+ PP P T + +K+PET
Sbjct: 186 ETSSLFQREGVNLLLGELSRRFPPNFLKNP------QTTTTQIKKEPET 228
>gi|148670770|gb|EDL02717.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_a [Mus musculus]
Length = 181
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|2618738|gb|AAB84363.1| RNA polymerase transcriptional regulation mediator [Homo sapiens]
gi|119601446|gb|EAW81040.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_c [Homo sapiens]
Length = 157
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|225707788|gb|ACO09740.1| RNA polymerase transcriptional regulation mediator, subunit 6
homolog [Osmerus mordax]
Length = 246
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 25/222 (11%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSGWVPI--LNPGNVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V P+ +Y++ G +YQAP L V +R+ A+
Sbjct: 64 VGVEYILLHAQEPILYIIRKQQRQSPTQVIPLSDFYIIAGVVYQAPDLGTVIGSRVLSAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H +Q AF A SK + D E SK +E L + +RVD +L
Sbjct: 124 HGVQSAFDEAMSYCRYHPSKGYWWHFKDQEEREKAKPKSKKKEEPSSLFQRQRVDTLLLD 183
Query: 195 LQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPA 236
L+ K PP Y P + EK + EP+PPA
Sbjct: 184 LRSKFPPT--------FYQP---KPGEKPIPVEVKKEPEPPA 214
>gi|194385654|dbj|BAG65202.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|357612379|gb|EHJ67949.1| hypothetical protein KGM_11343 [Danaus plexippus]
Length = 245
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 18/169 (10%)
Query: 47 FDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKR 104
DYF+ F+DRTCNNE ++M+ L + QL MTG+EY+L V EP L+VIRKQ R
Sbjct: 1 MDYFSERSNPFFDRTCNNEVVKMQR---LSMDQLQNMTGLEYILLHVQEPILYVIRKQHR 57
Query: 105 DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF--TTAASKLE--KIGY 160
P + P+ YY++ G +YQAP L +V ++RI A+H++Q +F T SK K +
Sbjct: 58 QSPMQTIPLADYYIIAGIVYQAPDLASVLNSRILSAVHHLQCSFEETMTYSKYHPSKGYW 117
Query: 161 VDAENDGG---------TPLHSKAGKETIDLKEVKRVDQILASLQRKLP 200
D +N G + S +E L + +RVD +LA L R+ P
Sbjct: 118 WDHKNKTGPFNVGQSAPKEVSSTPKEEPSTLFQRQRVDMLLAELVRQFP 166
>gi|195499583|ref|XP_002097011.1| GE24733 [Drosophila yakuba]
gi|194183112|gb|EDW96723.1| GE24733 [Drosophila yakuba]
Length = 249
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+S GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEASSYARYHPNKGY 145
Query: 161 V-DAENDG---------GTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPP 205
D ++ +S + + L + +RVD +LA L RK PP PP
Sbjct: 146 TWDFSSNKVLSDKSKSDKKDSNSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 200
>gi|194902745|ref|XP_001980755.1| GG17328 [Drosophila erecta]
gi|190652458|gb|EDV49713.1| GG17328 [Drosophila erecta]
Length = 249
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+S GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEASSYARYHPNKGY 145
Query: 161 --------VDAENDGGTPLHSKAGKE--TIDLKEVKRVDQILASLQRKLPPAPPP 205
V ++ + A K+ + L + +RVD +LA L RK PP PP
Sbjct: 146 TWDFSSNKVLSDKSKSDKKDANAAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 200
>gi|307106327|gb|EFN54573.1| hypothetical protein CHLNCDRAFT_135400 [Chlorella variabilis]
Length = 252
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSI---HPLDISQLSK 80
D+TG C+RD LWL + L + DYF+LS FYD C NE+ + P + +
Sbjct: 15 DLTGTCWRDDLWLAAFGLHHGTVLDYFSLSPFYDPACANERGFLAGKPRGQPPAVGE--- 71
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
G+EY+L++ PHLF++RK R +T + YY+LDGSIYQAP L AR+ R
Sbjct: 72 --GVEYLLADSQPPHLFILRKLYRHAGGAITTLAFYYILDGSIYQAPSLQAALLARMQRC 129
Query: 141 LHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSK--AGKET------IDLKEVKRVDQIL 192
+ ++ AF L + ++ + L + AG+E D ++ +RV+ +
Sbjct: 130 MFSLKAAFRDMQRDLAPLSLATSQQHEQSALERELAAGREVRRVLTPADKEQQQRVEANI 189
Query: 193 ASLQRKLP 200
+ R+ P
Sbjct: 190 RHVLRQFP 197
>gi|195330276|ref|XP_002031830.1| GM26214 [Drosophila sechellia]
gi|194120773|gb|EDW42816.1| GM26214 [Drosophila sechellia]
Length = 249
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGY 145
Query: 161 V-DAENDG---------GTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPP 205
D ++ +S + + L + +RVD +LA L RK PP PP
Sbjct: 146 TWDFSSNKVLSDKSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 200
>gi|198452017|ref|XP_001358588.2| GA21815 [Drosophila pseudoobscura pseudoobscura]
gi|198131751|gb|EAL27729.2| GA21815 [Drosophila pseudoobscura pseudoobscura]
Length = 258
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 36 VMDYFCRKSNPFYDHLCNNETIRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 92
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+S GY
Sbjct: 93 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEASSYARYHPNKGY 152
Query: 161 --------VDAENDGGTPLHSKAGKE--TIDLKEVKRVDQILASLQRKLPPAPPP 205
V ++ + A K+ + L + +RVD +LA L RK PP PP
Sbjct: 153 TWDFSSNKVLSDKSKSDKKDANAVKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 207
>gi|393247887|gb|EJD55394.1| MED6-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 304
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP-----LD 74
P D + F W+ + PL + DYF S+FYD+ NN+ LRM++IH +
Sbjct: 8 PADDHSHKFFIWHEWIQAHGPLTAENVLDYFATSMFYDKQSNNQVLRMQTIHTGVALKNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TG+E+ L P LFVI KQ R P+ V P++ Y++L IYQAP + +V S
Sbjct: 68 AEELKRFTGVEFALVTAQPPTLFVIHKQHRYSPDAVQPLVAYFILHNRIYQAPDVYSVVS 127
Query: 135 ARIGRALHYIQKAFTTAASK----LEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQ 190
R+ +LH +Q + T S ++G+V +G TP S+ D R
Sbjct: 128 NRMLASLHSLQASLETIRSHRPDFTPRLGFVWPIVEGNTPSASQGTAVAADTPRKARPSV 187
Query: 191 ---ILASLQRKLPPAPPPPPFPEG 211
++LQ PA P P PE
Sbjct: 188 EPPETSALQVSDDPAAPQPSAPEA 211
>gi|195145526|ref|XP_002013743.1| GL23233 [Drosophila persimilis]
gi|194102686|gb|EDW24729.1| GL23233 [Drosophila persimilis]
Length = 258
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 89/181 (49%), Gaps = 30/181 (16%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 36 VMDYFCRKSNPFYDHLCNNETIRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 92
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDA 163
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+S Y
Sbjct: 93 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEASS------YARY 146
Query: 164 ENDGGTPLHSKAGK-------------------ETIDLKEVKRVDQILASLQRKLPPAPP 204
+ G + K + L + +RVD +LA L RK PP P
Sbjct: 147 HPNKGYTWDFSSNKVLSDKSKSDKKDASAVKDENSGTLFQKQRVDMLLAELLRKFPPPIP 206
Query: 205 P 205
P
Sbjct: 207 P 207
>gi|194764689|ref|XP_001964461.1| GF23191 [Drosophila ananassae]
gi|190614733|gb|EDV30257.1| GF23191 [Drosophila ananassae]
Length = 251
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FY+ CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRRSNPFYEHICNNETIRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDA 163
R P + TP+ YY++ G++Y+AP L NV +ARI + +Q AF A+ GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINARILNTVVNLQSAFEEAS------GYARY 139
Query: 164 ENDGGTPLHSKAGK-------------------ETIDLKEVKRVDQILASLQRKLPPAPP 204
+ G + K + L + +RVD +LA L RK PP P
Sbjct: 140 HPNKGYTWDFSSNKVLSDKSKSDKKDTSSSKDENSGTLFQKQRVDMLLAELLRKFPPPIP 199
Query: 205 PPPFPEGYAPPQTEE 219
P APP +E
Sbjct: 200 PMLQNLQQAPPTGDE 214
>gi|443709640|gb|ELU04232.1| hypothetical protein CAPTEDRAFT_168225 [Capitella teleta]
Length = 238
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 22 GTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLS 79
D + + D W++ L+ + + DYF+ FYDRTCNNE ++M+ + QL
Sbjct: 2 AADTLSLSWHDPAWIHI--LNPSNVMDYFSDKNNPFYDRTCNNEIIKMQRGNQ---EQLG 56
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
MTG+EY+L V EP L+VIRKQ R +V P+ YY++ G +YQAP L +V S+R+
Sbjct: 57 NMTGLEYILLHVQEPILYVIRKQHRHSQSQVAPLADYYIIAGIVYQAPDLGSVISSRLLN 116
Query: 140 ALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV-------------- 185
H ++ AF A G+ G K K+T +L +
Sbjct: 117 TTHALESAFEEAN------GFSKYHPSKGYWWEFKDHKQTEELLQKDKKKKEEPSSIFQR 170
Query: 186 KRVDQILASLQRKLP 200
+RVD +LA L RK P
Sbjct: 171 QRVDVLLAELSRKYP 185
>gi|384249278|gb|EIE22760.1| hypothetical protein COCSUDRAFT_16273 [Coccomyxa subellipsoidea
C-169]
Length = 189
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 30 FRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS---IHPLDISQLSKMT---G 83
+RD WL YPL+ DYF LS FYDR CNNE +++ P+ ++ T G
Sbjct: 19 WRDDAWLAFYPLNVFTALDYFALSPFYDRGCNNELAKLQGGGLTAPVMTCHCARSTLPPG 78
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
+EY L + EPHLF+IRKQ R GP+ + YY+LDG++YQAP L S+RI R
Sbjct: 79 VEYELQDAQEPHLFIIRKQHRSGPKTTATLQFYYILDGNVYQAPSLHAALSSRIVR 134
>gi|356522222|ref|XP_003529746.1| PREDICTED: uncharacterized protein LOC100795560 [Glycine max]
Length = 130
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Query: 159 GYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTE 218
G VD+EN G L SK KETID+KE KRVD IL SLQR+LPPAPPPPPFPEGY P T
Sbjct: 39 GSVDSEN-GTALLESKTAKETIDIKEAKRVDHILTSLQRRLPPAPPPPPFPEGYVSPLTA 97
Query: 219 EAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
E EK ETQ+ AE Q P DPIIDQGPAKRMK
Sbjct: 98 ETEKGTETQEAAETQAPTADPIIDQGPAKRMKF 130
>gi|328768009|gb|EGF78057.1| hypothetical protein BATDEDRAFT_91168 [Batrachochytrium
dendrobatidis JAM81]
Length = 293
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 4/132 (3%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH-PLDISQLS--K 80
D+T + F+D +L L+ + DYF++S FYD++C NEQL+M+ H L QL +
Sbjct: 5 DLTTMSFKDTAFLQLLGLNEHNALDYFSMSQFYDKSCLNEQLKMQVRHNELQAQQLDGRQ 64
Query: 81 MTGIEYMLSEVM-EPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
M G+EY L +P L+VIRKQ R P +V + YY+++G+IYQ+P LC V + R+
Sbjct: 65 MKGLEYTLWYFTPQPSLYVIRKQTRLSPTRVDLVAVYYIVEGTIYQSPTLCQVLANRVRT 124
Query: 140 ALHYIQKAFTTA 151
+L++ + A A
Sbjct: 125 SLYFTKDALHVA 136
>gi|289743083|gb|ADD20289.1| RNA polymerase transcriptional regulation mediator subunit 6-like
protein [Glossina morsitans morsitans]
Length = 275
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYDR CNNE +RM+ L + L+ M G+EY+L V EP L+VIRKQ
Sbjct: 33 VMDYFCRKSNPFYDRMCNNENIRMQR---LGLENLNNMVGLEYILLHVHEPILYVIRKQH 89
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P P+ YY++ G +Y+AP L NV ++RI + +Q AF A++ GY
Sbjct: 90 RHSPTDAIPISDYYIIGGMVYKAPDLANVINSRILSTVTNLQLAFEEASNYSRYHPNKGY 149
Query: 161 V-DAENDGG---------TPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPP 205
D ++ + E+ + +++RVD +LA L RK PP PP
Sbjct: 150 TWDFTSNKALSDKSKAAAKKDATSNKDESGTVFQMQRVDMLLAELLRKFPPPVPP 204
>gi|193632029|ref|XP_001946140.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Acyrthosiphon pisum]
Length = 270
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
G+ + D W+ L+ N I DYF+ + FYDR+CNNE ++M+ L + QLS M G+
Sbjct: 16 GLSWHDSNWIPM--LNSNNILDYFSERSNPFYDRSCNNEAIKMQR---LSMDQLSNMIGL 70
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY L V EP L+V+RKQ R P TP+ +Y++ G +YQAP L ++ ++ + + +++
Sbjct: 71 EYCLLHVQEPILYVVRKQHRHSPTHSTPIADFYIVAGIVYQAPDLLSIINSHMMSSAYHL 130
Query: 145 QKAF---TTAASKLEKIGYVDAENDGGTPLH----------SKAGKETIDLKEVK----R 187
+ AF + A GY G P GK I+ + R
Sbjct: 131 ETAFEELNSLARFHPSKGYSWENRRPGQPTGPVTAPPPSPVKVTGKRDIEEASSQFQRLR 190
Query: 188 VDQILASLQRKLP 200
VD +L L RK P
Sbjct: 191 VDMLLVELTRKFP 203
>gi|321471825|gb|EFX82797.1| hypothetical protein DAPPUDRAFT_26730 [Daphnia pulex]
Length = 190
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 7/130 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYF--TLSLFYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ I + D W+ L+ + DYF T + FYDRTCNNE ++M+ L++ L+ +
Sbjct: 2 NLLWISWHDSAWIPI--LNPTNVMDYFQSTTNPFYDRTCNNEIVKMQR---LNMEHLNNL 56
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
TG+EYML V EP L+VIRKQ R VTP+ +Y++ G +YQAP L +V ++RI +
Sbjct: 57 TGLEYMLLHVQEPILYVIRKQHRHSAAVVTPLADFYIIAGVVYQAPDLGSVINSRISTTV 116
Query: 142 HYIQKAFTTA 151
+++Q AF A
Sbjct: 117 NHLQGAFDEA 126
>gi|256071931|ref|XP_002572291.1| med-6-related [Schistosoma mansoni]
gi|353229813|emb|CCD75984.1| med-6-related [Schistosoma mansoni]
Length = 293
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT-LSL-FYDRTCNNEQLRMRSIHPLDISQLSKM 81
D+ G+ + + W ++ L + DYF LS FYDR CNNE +RM+ +HP QL M
Sbjct: 8 DLYGVSWSNPAW--SHFLCSANVLDYFCDLSNPFYDRQCNNEVIRMQRLHP---EQLLCM 62
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
TGIE+ L EP LF+IRKQ+R P +VTP+ YYV++G++ QAP L + ++R+ A+
Sbjct: 63 TGIEFYLHHAQEPILFIIRKQQRLSPTQVTPLAYYYVINGTVLQAPDLSTLLNSRLLTAI 122
Query: 142 HYIQKAFTT 150
++K T
Sbjct: 123 VGLKKVIQT 131
>gi|47221313|emb|CAG13249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 265
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 51/249 (20%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF+ FYDRTCNNE ++M+ L + L++M G+EY+L EP L++IRKQ+
Sbjct: 24 VLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILYIIRKQQ 80
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR------------------------ 139
R P +V P+ YY++ G +YQAP L V S+R+ R
Sbjct: 81 RQSPAQVIPLSDYYIIAGVVYQAPDLGTVISSRVVRSPRNAVEMLTVKDASNNILCFQLS 140
Query: 140 ALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQIL 192
A+H IQ AF A SK + D E +K +E L + RVD +L
Sbjct: 141 AVHGIQSAFDEAMSYCRYHPSKGYWWHFKDQEEREKNKPKTKKKEEPSSLFQRHRVDTLL 200
Query: 193 ASLQRKLPPA-----PPPPPFP-----EGYAPPQTEEAEKDPETQQTAEPQPPAIDPIID 242
L+ K PP P P P E AP + + E+ +++ P PP+ P
Sbjct: 201 VDLRSKFPPTFYQPKPGEKPIPVEVKKEPEAPTEAVKQEEREPGAKSSAPAPPSKQP--- 257
Query: 243 QGPAKRMKI 251
P KR ++
Sbjct: 258 --PEKRARL 264
>gi|393218851|gb|EJD04339.1| MED6-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 321
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ PL +FDYF S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PADDYSHRFFIWHEWIQANGPLTTETVFDYFATSMFYDKQSNNQVLRMQTMHTGQPILNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P LF+I K++R PE+V P+ Y++++ IYQ+P L V S
Sbjct: 68 AEELKRFTGIEFALVHAQPPSLFIIHKRERLSPEEVRPLAAYFIINNRIYQSPDLYTVIS 127
Query: 135 ARIGRALHYIQKAF 148
R+ +LH +Q +
Sbjct: 128 NRLLTSLHAVQSSL 141
>gi|395334067|gb|EJF66443.1| MED6-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 340
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 6/134 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ + PL FDYFT S+FYD+ NN+ LRM+++H PL +
Sbjct: 7 PPDDYSHRFFIWHEWIQAHGPLTLENAFDYFTTSMFYDKQSNNQVLRMQTMHTGAPLVNE 66
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P LF+I K++R P++V P+ Y++L+ IYQ+P + N+ S
Sbjct: 67 AEELKRFTGIEFALVYAEAPSLFIIHKRERLSPDEVRPLAVYFILNNRIYQSPDVYNLVS 126
Query: 135 ARIGRALHYIQKAF 148
R+ +LH +QK+
Sbjct: 127 NRLLTSLHSLQKSL 140
>gi|198417321|ref|XP_002119333.1| PREDICTED: similar to Mediator complex subunit 6, partial [Ciona
intestinalis]
Length = 134
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
I + D LN P ++ I DYF+ + FYDRTCNNE ++M+ L ++ L M G+E
Sbjct: 14 ISWNDPALLNPLP-NKEQILDYFSGRSNPFYDRTCNNETIKMQR---LSLAHLENMVGVE 69
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y+L EP L+VIRKQ+R P +VT + YYV+ G++YQAP L +V ++R+ H++
Sbjct: 70 YILLHEQEPILYVIRKQRRHSPNQVTIIADYYVIAGTVYQAPDLASVCNSRLMTTFHHLD 129
Query: 146 KAFT 149
AF+
Sbjct: 130 SAFS 133
>gi|229366266|gb|ACQ58113.1| Mediator of RNA polymerase II transcription subunit 6 [Anoplopoma
fimbria]
Length = 165
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ F DRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSGWVPI--LNPGNVLDYFSERSNPFDDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V PM YY++ G +YQAP L V S+R A+
Sbjct: 64 VGVEYILLHAQEPILYIIRKQQRQSPTQVIPMADYYIIAGVVYQAPDLGTVISSRALSAV 123
Query: 142 HYIQKAFTTAAS 153
H IQ AF A S
Sbjct: 124 HGIQSAFDEAMS 135
>gi|392571367|gb|EIW64539.1| MED6-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 327
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 6/140 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ + PL FDYFT S+FYD+ NN+ LRM+++H PL +
Sbjct: 7 PPDDYSHRFFIWHEWILAHGPLTAENAFDYFTTSMFYDKQSNNQVLRMQTMHTGLPLVNE 66
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P LF+I K++R P +V P+ Y++L+ IYQ+P + + S
Sbjct: 67 AEELRRFTGIEFALVHAEPPSLFIIHKRERLSPHEVRPLAVYFILNHRIYQSPDVYTLIS 126
Query: 135 ARIGRALHYIQKAFTTAASK 154
R+ +LH +QK+ T S
Sbjct: 127 NRLLTSLHSLQKSLDTLRSH 146
>gi|449664619|ref|XP_004205965.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Hydra magnipapillata]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
I + D W+ L+ + DYF + FYD+TCNNE ++M+ + P SQL M+G+
Sbjct: 12 AISWHDSAWMPI--LNSENVLDYFCQRSNTFYDKTCNNEHIKMQRLDP---SQLQFMSGV 66
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY L +P L++IRKQ R + TP+ YY+L G +YQAP + ++ ++++ ++H +
Sbjct: 67 EYQLIHSQDPILYIIRKQMRYSQTQATPLAFYYILAGVVYQAPDIGSLINSKLLSSVHQL 126
Query: 145 QKAFTTAAS------------KLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQIL 192
Q AF A S L+ I Y++ G + ++ ++ RVD +L
Sbjct: 127 QSAFAEARSYARYNPSKGYWWHLKSI-YLEESKTKGNVIKKTTKPGSVFQRQ--RVDLLL 183
Query: 193 ASLQRKLPP 201
+ L K PP
Sbjct: 184 SDLVEKYPP 192
>gi|448112354|ref|XP_004202075.1| Piso0_001548 [Millerozyma farinosa CBS 7064]
gi|359465064|emb|CCE88769.1| Piso0_001548 [Millerozyma farinosa CBS 7064]
Length = 261
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGI 84
W+ + L + DYF+ S FYDRT NN+ LRM+ +IHP S+L++MTGI
Sbjct: 16 WIQQFGLHTANVLDYFSESPFYDRTSNNQVLRMQFQFQNMPPNIHPATYLQSKLTEMTGI 75
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
E+++ EP ++IRKQ R GP T + YY++ ++YQAP++ ++ S+R+ ++ +
Sbjct: 76 EFVIVYSREPDFWIIRKQDRSGPHSTTTLQDYYIIGANVYQAPKIHDIISSRLLATVNSL 135
Query: 145 QKA--FTTAASKLEKIGYVDAENDGGTPLHSKAGKE 178
+ + T+ SK + DGG S A KE
Sbjct: 136 RNSMDLITSMSKFDV-------QDGGHLYSSTAEKE 164
>gi|449550660|gb|EMD41624.1| hypothetical protein CERSUDRAFT_110195 [Ceriporiopsis subvermispora
B]
Length = 302
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D F W+ Y PL +FDYF S+FYD+ NN+ LRM+++H PL +
Sbjct: 8 PLDDWAHRFFIWHEWIQVYGPLTNENVFDYFATSMFYDKQSNNQVLRMQTMHTGVPLQNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TG+E+ + P+ F+I K++R P++V P+ Y++ + IYQAP L + S
Sbjct: 68 AEELKRFTGVEFAVVHSEPPNFFIIHKRERLSPDEVRPLAVYFITNNRIYQAPDLYTLIS 127
Query: 135 ARIGRALHYIQKAF 148
R+ +LH +Q +
Sbjct: 128 NRLLTSLHALQSSL 141
>gi|336374392|gb|EGO02729.1| hypothetical protein SERLA73DRAFT_47627 [Serpula lacrymans var.
lacrymans S7.3]
gi|336387284|gb|EGO28429.1| hypothetical protein SERLADRAFT_366138 [Serpula lacrymans var.
lacrymans S7.9]
Length = 293
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D T F W+ PL + +FDYF S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PLDDYTHRFFIWHEWIQANGPLTVDNVFDYFATSMFYDKQSNNQVLRMQTMHIAMPILNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P LF+I K++R PE+V P+ Y+V++ IYQ+P + V S
Sbjct: 68 AEELKRFTGIEFALVHAHPPSLFIIHKRERLSPEEVRPLAAYFVVNNRIYQSPDVYTVLS 127
Query: 135 ARIGRALHYIQKAFTTAAS----KLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQ 190
R+ +L+ +Q + S + G+V P+ + E + +VD
Sbjct: 128 NRLLTSLYSLQSSLDILRSYRPDYTPRTGFV-------WPVMDPSLVEGTNKNHKSQVDP 180
Query: 191 ILASLQRKLPP 201
I A+ Q+ LPP
Sbjct: 181 IGAASQQDLPP 191
>gi|225710520|gb|ACO11106.1| Mediator of RNA polymerase II transcription subunit 6 [Caligus
rogercresseyi]
Length = 259
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 8/127 (6%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGI 84
I + D W+ L+ + DYF+ + FYDRTCNNE ++++ ++P Q+ M+G
Sbjct: 16 SISWHDSAWIPM--LNAGNVLDYFSERSNPFYDRTCNNEVIKVQRLNP---EQMQNMSGT 70
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
EY+L V EP L+VIRKQ R +V P++ YY++ G +YQAP L ++ ++RI ++H++
Sbjct: 71 EYILLHVQEPILYVIRKQLRVQ-GRVMPLVDYYIIAGIVYQAPDLGSILNSRILSSVHHL 129
Query: 145 QKAFTTA 151
AF A
Sbjct: 130 SSAFEEA 136
>gi|194390774|dbj|BAG62146.1| unnamed protein product [Homo sapiens]
Length = 128
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 7/116 (6%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRV 119
>gi|444732205|gb|ELW72511.1| Mediator of RNA polymerase II transcription subunit 6 [Tupaia
chinensis]
Length = 239
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 21/188 (11%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + YF+ FYDRTC+NE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLGYFSQRSNPFYDRTCSNEMVKMQR---LILEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LFVIRKQ++ P +V P+ Y ++ G IY AP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFVIRKQQQQSPAQVIPLADYSIITGVIYPAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETI--DLK------EVKRVDQILA 193
H IQ A G + ++ GGT S+ K I +LK + + D +L
Sbjct: 124 HGIQSALMKLR---HTAGIILPKDIGGT---SEIMKNKIKPNLKPRGKKNQRQYADALLV 177
Query: 194 SLQRKLPP 201
L++K PP
Sbjct: 178 DLRQKFPP 185
>gi|405966977|gb|EKC32197.1| Mediator of RNA polymerase II transcription subunit 6 [Crassostrea
gigas]
Length = 245
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 15 PAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHP 72
P P + G+ + D W+ L+ + DYF FYD CNN+ ++ +
Sbjct: 5 PIIQPKTKNPLLGMSWYDSAWVPL--LNPTNVLDYFCERSNPFYDHMCNNQIIKSQR--- 59
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L QL+ M GIEY+L V EP L+VIRKQ R P +VTP+ YY+++G ++ AP L +V
Sbjct: 60 LSQEQLNNMVGIEYILLHVQEPILYVIRKQHRFSPTQVTPLADYYIVNGVVHLAPDLYSV 119
Query: 133 FSARIGRALHYIQKAFTTAASKLE---KIGYVDAENDGGTPLHSKAGKETI-----DLKE 184
+AR+ + +Q AF A S GY ++ P ++ + +
Sbjct: 120 INARLLNTVSSLQSAFDEAMSYSRYHPSKGYSWEFSEKEEPEKKESSDKKKKEEPSSFFQ 179
Query: 185 VKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQ 228
+RVD +L L +K PP P E P +EA E +Q
Sbjct: 180 RQRVDNLLGELAKKFPPKVVQPIHTEVKEEPVKQEAVVKQEIKQ 223
>gi|448114905|ref|XP_004202699.1| Piso0_001548 [Millerozyma farinosa CBS 7064]
gi|359383567|emb|CCE79483.1| Piso0_001548 [Millerozyma farinosa CBS 7064]
Length = 261
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGI 84
W+ + L + DYF+ S FYDRT NN+ LRM+ +IHP S+L++MTGI
Sbjct: 16 WIQQFGLHTANVLDYFSESPFYDRTSNNQVLRMQFQFQNMPPNIHPATYLQSKLTEMTGI 75
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
E+++ EP ++IRKQ R GP T + YY++ ++YQAP++ ++ S+R+ ++ +
Sbjct: 76 EFVIVYSREPDFWIIRKQDRSGPHSTTTLQDYYIIGANVYQAPKIHDIISSRLLATVNSL 135
Query: 145 QKA--FTTAASKLEKIGYVDAENDGGTPLHSKAGKE 178
+ + T+ SK + DGG + A K+
Sbjct: 136 RNSMDLITSMSKFDV-------QDGGHLYSNTAEKD 164
>gi|119601447|gb|EAW81041.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_d [Homo sapiens]
Length = 206
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 96/203 (47%), Gaps = 36/203 (17%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV 185
++R+ A+H IQ AF A SK + D E +K +E + +
Sbjct: 64 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQR 123
Query: 186 KRVDQILASLQRKLPPA--------PPPP---------PFPEGYAPPQTEEAEKDPETQQ 228
+RVD +L L++K PP P P P PE P EE E QQ
Sbjct: 124 QRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKP---EEKETTKNVQQ 180
Query: 229 TAEPQPPAIDPIIDQGPAKRMKI 251
T + P P KRM++
Sbjct: 181 TVSAKGP---------PEKRMRL 194
>gi|392597130|gb|EIW86452.1| MED6-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 306
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ PL +F+YFT S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PPDDYSHRFFIWHEWIQANGPLTSENVFEYFTTSMFYDKQSNNQVLRMQTMHTGQPILNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TG+E+ ++ P LF+I K+ R PE+V P+ Y+V++ IYQ+P L + S
Sbjct: 68 AEELKRFTGVEFAVTYAQPPSLFIIHKRDRLSPEEVRPLAAYFVVNNRIYQSPDLYTILS 127
Query: 135 ARIGRALHYIQKAFTTAASK 154
R+ +L +Q + SK
Sbjct: 128 NRLLTSLTSLQTSMDILRSK 147
>gi|119601445|gb|EAW81039.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_b [Homo sapiens]
Length = 195
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 96/203 (47%), Gaps = 36/203 (17%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV 185
++R+ A+H IQ AF A SK + D E +K +E + +
Sbjct: 64 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQR 123
Query: 186 KRVDQILASLQRKLPPA--------PPPP---------PFPEGYAPPQTEEAEKDPETQQ 228
+RVD +L L++K PP P P P PE P EE E QQ
Sbjct: 124 QRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKP---EEKETTKNVQQ 180
Query: 229 TAEPQPPAIDPIIDQGPAKRMKI 251
T + P P KRM++
Sbjct: 181 TVSAKGP---------PEKRMRL 194
>gi|109084157|ref|XP_001082669.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
isoform 3 [Macaca mulatta]
gi|11231121|dbj|BAB18155.1| hypothetical protein [Macaca fascicularis]
Length = 195
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 97/200 (48%), Gaps = 30/200 (15%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV 185
++R+ A+H IQ AF A SK + D E +K +E + +
Sbjct: 64 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQR 123
Query: 186 KRVDQILASLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAE 231
+RVD +L L++K PP P P P E P+T EE E QQT
Sbjct: 124 QRVDALLLDLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKSEEKETTKNVQQTVS 183
Query: 232 PQPPAIDPIIDQGPAKRMKI 251
+ P P KRM++
Sbjct: 184 AKGP---------PEKRMRL 194
>gi|149025060|gb|EDL81427.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) (predicted), isoform CRA_a [Rattus norvegicus]
Length = 195
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV 185
++R+ A+H IQ AF A SK + D E +K +E + +
Sbjct: 64 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKAKRKEEPSSIFQR 123
Query: 186 KRVDQILASLQRKLPP-----APPPPPFPEGYAPPQTEEAEKDPETQQTAEPQP--PAID 238
+RVD +L L++K PP P P A +EAE PET ++ E + A
Sbjct: 124 QRVDALLIDLRQKFPPRFVQQKSGEKPVPVDQA---KKEAEPLPETVKSEEKESAKSAQQ 180
Query: 239 PIIDQG-PAKRMKI 251
+ +G P KRM++
Sbjct: 181 TVSTKGPPEKRMRL 194
>gi|27754027|ref|NP_081489.2| mediator of RNA polymerase II transcription subunit 6 [Mus
musculus]
gi|15341839|gb|AAH13096.1| Mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast) [Mus musculus]
gi|148670771|gb|EDL02718.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_b [Mus musculus]
Length = 195
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 30/200 (15%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEV 185
++R+ A+H IQ AF A SK + D E +K +E + +
Sbjct: 64 INSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQR 123
Query: 186 KRVDQILASLQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAE 231
+RVD +L L++K PP P P + A P ++EE E QQT
Sbjct: 124 QRVDALLIDLRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVS 183
Query: 232 PQPPAIDPIIDQGPAKRMKI 251
+ P P KRM++
Sbjct: 184 TKGP---------PEKRMRL 194
>gi|238587578|ref|XP_002391473.1| hypothetical protein MPER_09092 [Moniliophthora perniciosa FA553]
gi|215456179|gb|EEB92403.1| hypothetical protein MPER_09092 [Moniliophthora perniciosa FA553]
Length = 253
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 5/114 (4%)
Query: 40 PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--DISQLSKMTGIEYMLSEVMEP 94
PL +F+YFT S+FYD+ NN+ LRM+++H P+ + +L + TG+E+ L P
Sbjct: 93 PLTTENVFEYFTTSMFYDKQSNNQVLRMQTMHTGMPVVNEAEELKRFTGVEFALVHSQPP 152
Query: 95 HLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
LF+I K++R PE+V P+ Y++++ IYQAP + V S R+ +++ IQ +
Sbjct: 153 SLFIIHKRERLSPEEVKPLAAYFIMNNRIYQAPDVYTVLSNRLLTSIYSIQTSL 206
>gi|302694927|ref|XP_003037142.1| hypothetical protein SCHCODRAFT_34765 [Schizophyllum commune H4-8]
gi|300110839|gb|EFJ02240.1| hypothetical protein SCHCODRAFT_34765, partial [Schizophyllum
commune H4-8]
Length = 177
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 21 PGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS------IHPL 73
P DM+ F D ++L + L +F YF S FYDR CNNE LRM++ I L
Sbjct: 8 PIDDMSHRYFVDPMFLEAWGGLSEENLFMYFEHSGFYDRGCNNEILRMQTFATGEQIDLL 67
Query: 74 DISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVF 133
+L + G+EYML P LF+I KQ+R E+V P+ Y++++G++YQAP + V
Sbjct: 68 RTDKLRNLKGVEYMLVRSEPPSLFIIHKQERLSEEEVKPLQVYFIINGNVYQAPDVHTVL 127
Query: 134 SARIGRALHYIQKA 147
S R+ LH +Q
Sbjct: 128 SNRLLTTLHSLQNT 141
>gi|298714764|emb|CBJ25663.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 161
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 19/140 (13%)
Query: 30 FRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLS 89
F D +WL + L DYF LS FYD+ CNNEQ RM+ + P + L +TG+E+ML
Sbjct: 15 FIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPRE--GLLNLTGLEFMLV 72
Query: 90 EV-----------------MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
E+ LFVI+KQ R P V YY+++G IYQAP + +
Sbjct: 73 ELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKL 132
Query: 133 FSARIGRALHYIQKAFTTAA 152
+R+ + H++ AF A
Sbjct: 133 IKSRLNKFTHHLNNAFGEAG 152
>gi|389742295|gb|EIM83482.1| MED6-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 309
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ PL +FDYF+ S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PADDHSHRFFIWHEWIQANGPLTSENVFDYFSTSMFYDKQSNNQVLRMQTVHTGKPIVNE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ + P LF+I K++R P+ V + Y+V + IY +P + VFS
Sbjct: 68 AEELKRFTGIEFTVVHAQPPTLFIIHKRERLSPDDVRILAVYFVTNNRIYHSPDIYTVFS 127
Query: 135 ARIGRALHYIQKAF 148
R+ +L+ +Q +
Sbjct: 128 NRLLTSLYSMQTSL 141
>gi|440800292|gb|ELR21331.1| MED6 mediator sub complex component protein [Acanthamoeba
castellanii str. Neff]
Length = 226
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEY 86
G+CF W PL + + D+F+ S FYD++CNNE LRM+ D+S L MTG+EY
Sbjct: 17 GVCFVHPSWFGG-PLGPHNVLDFFSASDFYDKSCNNELLRMQE---RDMSLLRAMTGLEY 72
Query: 87 MLSEVMEPH-LFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
+ E +F++ KQ R+ P+ P YYV+ G++YQ P + +V +AR+ ++++
Sbjct: 73 EIRYADEAQGIFLLCKQIRESPDLAHPQTYYYVMHGTVYQCPTIQHVLTARMTTCSYHLE 132
Query: 146 KAFTTAASKL 155
+AF ++ +
Sbjct: 133 EAFRMVSAAV 142
>gi|50554547|ref|XP_504682.1| YALI0E32373p [Yarrowia lipolytica]
gi|74633124|sp|Q6C3T0.1|MED6_YARLI RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|49650551|emb|CAG80286.1| YALI0E32373p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 21/173 (12%)
Query: 24 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPL 73
++ + +R W+ + L + + DYF S FYDR NN+ LRM++ + P
Sbjct: 3 NLDEVQWRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQ 62
Query: 74 DISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
Q L KMTGIE++++ V EP L+VI+KQ R P++ TP+ TY+V++ ++Y AP + +
Sbjct: 63 HFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAI 122
Query: 133 FSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 175
+R+ ++++A A S + Y D++ +D TP SKA
Sbjct: 123 MQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175
>gi|241953587|ref|XP_002419515.1| RNA polymerase II mediator complex subunit, putative [Candida
dubliniensis CD36]
gi|241953625|ref|XP_002419534.1| RNA polymerase II mediator complex subunit, putative [Candida
dubliniensis CD36]
gi|223642855|emb|CAX43110.1| RNA polymerase II mediator complex subunit, putative [Candida
dubliniensis CD36]
gi|223642874|emb|CAX43129.1| RNA polymerase II mediator complex subunit, putative [Candida
dubliniensis CD36]
Length = 262
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPLGVSFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+
Sbjct: 80 AYTKEPDFWIIRKQKRQDPQNTLTLQDYYIIGANVYQAPRIYDVLSSRL 128
>gi|68479832|ref|XP_716085.1| hypothetical protein CaO19.7420 [Candida albicans SC5314]
gi|74590347|sp|Q5A2Z1.1|MED6_CANAL RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|46437736|gb|EAK97077.1| hypothetical protein CaO19.7420 [Candida albicans SC5314]
gi|238881014|gb|EEQ44652.1| conserved hypothetical protein [Candida albicans WO-1]
gi|238881033|gb|EEQ44671.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 263
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+
Sbjct: 80 AYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
>gi|448522486|ref|XP_003868701.1| Med6 protein [Candida orthopsilosis Co 90-125]
gi|380353041|emb|CCG25797.1| Med6 protein [Candida orthopsilosis]
Length = 258
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ + +YF LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTANVLEYFALSPFYDRTSNNQVLMMQFQYQQIQIPVHISFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ V EP +++RKQKR P+ T + YY++ +IYQAP++ ++ S+R+
Sbjct: 80 AFVKEPDFWIVRKQKRLNPQSATALQDYYIIGANIYQAPKVYDILSSRL 128
>gi|313227321|emb|CBY22467.1| unnamed protein product [Oikopleura dioica]
Length = 255
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 21/178 (11%)
Query: 41 LDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFV 98
L+ N + DYF+ + FYDR CNNEQLRM+ PLD L M GIEY L EP L++
Sbjct: 31 LNANNVLDYFSNIANPFYDRQCNNEQLRMQG-RPLD--SLVNMPGIEYTLHHYQEPVLYI 87
Query: 99 IRKQKR---DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTA--AS 153
I+K++R D +++ P+ Y+++ G++Y AP L +V ++R+ AL + AF AS
Sbjct: 88 IQKRRRVITDSGQQLEPLAYYHIICGTVYMAPDLASVLNSRLATALDRVHVAFKKCQRAS 147
Query: 154 KLE-KIGYVDAENDGGTPLHSKAGKETIDLK----------EVKRVDQILASLQRKLP 200
+ GY DG +A ++ +++ + RVD +L +QR P
Sbjct: 148 NFDPDKGYSWNWGDGDKTKEEQAKEKEEEVQRQLQKIATPFQKNRVDILLGKMQRSHP 205
>gi|409083112|gb|EKM83469.1| hypothetical protein AGABI1DRAFT_66107 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 297
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ + PL +FDYFT S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PPDDYSHRFFIWHEWIQAHGPLTTENVFDYFTTSMFYDKQSNNQVLRMQTMHTGIPIANE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P F+I K++R P+ P+ Y+++ IYQ+P + ++ S
Sbjct: 68 AEELKRFTGIEFALVHAQPPSFFIIHKRERLSPDDAKPLAAYFIVHNRIYQSPDVYSILS 127
Query: 135 ARIGRALHYIQKAFT 149
R+ + +Q +
Sbjct: 128 NRLLATVQSLQASLN 142
>gi|406604608|emb|CCH43948.1| Mediator of RNA polymerase II transcription subunit 6
[Wickerhamomyces ciferrii]
Length = 257
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-------IHPLDIS-QLSKMTGIEY 86
W+ + L + + +YF+ S F+DRT NN+ ++M+S +H L+I +L KM GIE+
Sbjct: 17 WIQAFGLRTDNVLEYFSQSPFFDRTSNNQVVKMQSQFNENIQLHSLNIEFELKKMKGIEF 76
Query: 87 MLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
++ EP ++IRKQ R GPE+V + YY++ ++Y AP + +V S R+
Sbjct: 77 VILHRREPDFWIIRKQYRTGPEQVESLSDYYIIGANVYMAPTVKDVVSTRL 127
>gi|213410038|ref|XP_002175789.1| mediator of RNA polymerase II transcription subunit 6
[Schizosaccharomyces japonicus yFS275]
gi|212003836|gb|EEB09496.1| mediator of RNA polymerase II transcription subunit 6
[Schizosaccharomyces japonicus yFS275]
Length = 248
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 16/229 (6%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPL 73
++ PP D+T I +R W+ L + +YF+ S FYDR NN+ L+M+S + L
Sbjct: 2 SSVPPADLDLTSIQWRMPEWVQAMGGLRTENVLEYFSQSPFYDRRSNNQMLKMQSQFNAL 61
Query: 74 DI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
D+ SQL ++ GI++++ P L++I+KQ R P +V P+ Y+V + +IY AP
Sbjct: 62 DLGDMNSQLQRLQGIQFVIIHERPPDLWIIQKQNRLNPSEVKPLANYFVCNENIYMAPNA 121
Query: 130 CNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVD 189
+ + R+ A + ++KA S ++ I E P + E + ++ +D
Sbjct: 122 YTLLATRLLNATYCLRKAL----SDVKDIASFSPERGYSYPTNLSLDSELDESQQEDNLD 177
Query: 190 QILASLQRKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEPQPPAID 238
+AS ++ P PP +EE E+ T P++D
Sbjct: 178 DTVASENQETFAGDRQP------NPPASEEKEEASNTPSLESAMTPSLD 220
>gi|157117015|ref|XP_001652934.1| hypothetical protein AaeL_AAEL007825 [Aedes aegypti]
gi|108876218|gb|EAT40443.1| AAEL007825-PA [Aedes aegypti]
Length = 208
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 12/132 (9%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+L V +P L+VIRKQ R P + TP+ YY++ G++YQAP L +VF++RI
Sbjct: 1 MTGVEYILLHVQDPILYVIRKQHRYSPTEATPLADYYIIAGTVYQAPDLASVFNSRILST 60
Query: 141 LHYIQKAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKEVKRV 188
+H++Q AF A+S GY + +N + A +E L + +RV
Sbjct: 61 VHHLQSAFEEASSYSRYHPSKGYSWDFTSNKALAEKNKSEKSKETPAKEEPSSLFQRQRV 120
Query: 189 DQILASLQRKLP 200
D +L L RK P
Sbjct: 121 DMLLGDLLRKFP 132
>gi|170086081|ref|XP_001874264.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651816|gb|EDR16056.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 40 PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--DISQLSKMTGIEYMLSEVMEP 94
PL +FDYF S+FYD+ NN+ LRM++IH P+ + +L + GIE+ + P
Sbjct: 28 PLTSENVFDYFATSMFYDKQSNNQVLRMQTIHTGMPIVNEAEELRRFVGIEFAVVHAEPP 87
Query: 95 HLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
FVI+K++R P++V P+ Y+V + IYQ+P L V S R+ ++ +Q +
Sbjct: 88 SFFVIQKRERLSPDEVRPLAAYFVTNNRIYQSPDLYTVLSNRLLTSVSALQSSL 141
>gi|358340995|dbj|GAA48777.1| mediator of RNA polymerase II transcription subunit 6 [Clonorchis
sinensis]
Length = 281
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 30/204 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFT-LSL-FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + + W ++ L + DYF LS FYDR CNNE +RM+ L QL M
Sbjct: 7 NLYGISWSNPAW--SHLLCAANVLDYFCDLSNPFYDRQCNNEVIRMQR---LSAEQLLCM 61
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
TG+E+ L EP LF+IRKQ+R +VTP+ YY+++G++ QAP L + S+R+ +
Sbjct: 62 TGVEFYLHHAQEPILFIIRKQQRLTSTQVTPLAYYYIINGTVLQAPDLTTLLSSRLLTTV 121
Query: 142 HYIQKAFTTAA-----------------SKLEKIGYVDAENDGGTPLHSKAGKET----I 180
+ + K T A + L + VDAE TP+ S ++
Sbjct: 122 NSLNKILQTLAPCARYHPSDGSYSWDDPNTLLGLTNVDAEG-VVTPVKSGQSSKSEQPPA 180
Query: 181 DLKEVKRVDQILASLQRKLP-PAP 203
+L +V+R D +LA + P P+P
Sbjct: 181 NLFQVQRADFLLAEWANRFPLPSP 204
>gi|170039283|ref|XP_001847470.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167862871|gb|EDS26254.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 224
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+L V +P L+VIRKQ R P + TP+ YY++ G++YQAP L +VF++R+
Sbjct: 1 MTGVEYILLHVQDPILYVIRKQHRHTPTEATPLADYYIIAGTVYQAPDLASVFNSRMLST 60
Query: 141 LHYIQKAFTTAASKLE---KIGY--------VDAENDGGTPLHSKAGKET-IDLKEVKRV 188
+H++Q AF ++S GY AEN+ A KE L + +RV
Sbjct: 61 VHHLQSAFEESSSFARYHPSKGYSWDFSSNKAIAENNKTDKSKEVAAKEEPSSLFQRQRV 120
Query: 189 DQILASLQRKLPPAPPPPPFPEGY 212
D +L L RK P P P+ Y
Sbjct: 121 DMLLGDLLRKF-----PLPIPQAY 139
>gi|255718025|ref|XP_002555293.1| KLTH0G05896p [Lachancea thermotolerans]
gi|238936677|emb|CAR24856.1| KLTH0G05896p [Lachancea thermotolerans CBS 6340]
Length = 257
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 32/148 (21%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------R 68
W+ ++ L + + DYF S F+DRT NN+ +M R
Sbjct: 16 WIQSFGLRTDNVLDYFAESPFFDRTSNNQVAKMQQQFAQPRPAGQVAPSMSLEDPDPHRR 75
Query: 69 SI------HPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGS 122
SI H L +L K+ G+EY+L+ V EP ++IRKQ R GP V+P+ YY++ +
Sbjct: 76 SILSTYMVHALWEQELRKLKGVEYILAYVREPDFWIIRKQNRTGPTAVSPLQDYYIIGAN 135
Query: 123 IYQAPQLCNVFSARIGRALHYIQKAFTT 150
+YQAP + + +R+ + ++ KA ++
Sbjct: 136 VYQAPSVFKIVQSRLLSSNLHLSKALSS 163
>gi|410563148|pdb|4H63|F Chain F, Structure Of The Schizosaccharomyces Pombe Mediator Head
Module
Length = 183
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 10/153 (6%)
Query: 12 GAPPAAPPPPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS- 69
G+ A+ PP D+T I +R W+ + L + +YF+ S FY NNE L+M+S
Sbjct: 1 GSHMASGAPPSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQ 60
Query: 70 IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQ 125
+ LD+ SQL ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY
Sbjct: 61 FNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYM 120
Query: 126 APQLCNVFSARIGRALHYIQKAFTTAASKLEKI 158
AP + + R+ A + QKA T K+EK
Sbjct: 121 APNAYTLLATRMLNATYCFQKALT----KIEKF 149
>gi|354547943|emb|CCE44678.1| hypothetical protein CPAR2_404820 [Candida parapsilosis]
Length = 260
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ + +YF LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTANVLEYFALSPFYDRTSNNQVLMMQFQYQQIQIPVHISFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ + EP ++IRKQKR + T + YY++ +IYQAP++ +V S+R+
Sbjct: 80 AYIKEPDFWIIRKQKRINSQVTTTLQDYYIIGANIYQAPKVYDVLSSRL 128
>gi|426201836|gb|EKV51759.1| hypothetical protein AGABI2DRAFT_198255 [Agaricus bisporus var.
bisporus H97]
Length = 297
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 21 PGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--D 74
P D + F W+ + PL +FDYF S+FYD+ NN+ LRM+++H P+ +
Sbjct: 8 PPDDYSHRFFIWHEWIQAHGPLTTENVFDYFATSMFYDKQSNNQVLRMQTMHTGIPIANE 67
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
+L + TGIE+ L P F+I K++R P+ P+ Y+++ IYQ+P + ++ S
Sbjct: 68 AEELKRFTGIEFALVHAQPPSFFIIHKRERLSPDDAKPLAAYFIVHNRIYQSPDVYSILS 127
Query: 135 ARIGRALHYIQKAFT 149
R+ + +Q +
Sbjct: 128 NRLLATVQSLQASLN 142
>gi|299755091|ref|XP_001828420.2| hypothetical protein CC1G_04391 [Coprinopsis cinerea okayama7#130]
gi|298411065|gb|EAU93412.2| hypothetical protein CC1G_04391 [Coprinopsis cinerea okayama7#130]
Length = 426
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 40 PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--DISQLSKMTGIEYMLSEVMEP 94
PL +FDYF S+FYD+ NN+ LRM++I+ P+ + +L + TGIE+ + P
Sbjct: 77 PLTEQNVFDYFATSMFYDKQSNNQVLRMQTIYTGVPIANEAEELRRFTGIEFAVVHAQPP 136
Query: 95 HLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
F+I K++R P++V P+ Y++ + IYQAP L ++ S R+ ++ +Q
Sbjct: 137 AFFIIHKRERISPDEVKPLAAYFINNNRIYQAPDLYSLLSNRLLTSVSALQTTL 190
>gi|323508051|emb|CBQ67922.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 244
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 39 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP-----------LDISQLSKMTGIEYM 87
+PL + + YF S F+DR NNEQ+RM++I + ++L + TG+EY+
Sbjct: 46 HPLTESNVMSYFATSPFFDRRSNNEQIRMQNIANGLAPGMGMGARQEETELRRFTGLEYV 105
Query: 88 LSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKA 147
L P FV++K+ R P + TP+ YY+++ SIYQAP L +V + R+ ++ ++ +
Sbjct: 106 LVHARPPACFVVQKRWRSSPSEATPLAAYYIINDSIYQAPDLYSVLATRLQSTVYGLKSS 165
Query: 148 FTT 150
+T
Sbjct: 166 LST 168
>gi|312371265|gb|EFR19498.1| hypothetical protein AND_22336 [Anopheles darlingi]
Length = 184
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+L V +P L+VIRKQ R P + TP+ YY++ G++YQAP L +VF++RI
Sbjct: 1 MTGMEYILLHVQDPILYVIRKQHRYSPTEATPLADYYIIAGTVYQAPDLASVFNSRILST 60
Query: 141 LHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLP 200
+H++Q AF ++S + + + T + +E + + +RVD +L L RK P
Sbjct: 61 VHHLQTAFDESSS-YSRYHPIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLGDLLRKFP 119
>gi|19114415|ref|NP_593503.1| mediator complex subunit Pmc5 [Schizosaccharomyces pombe 972h-]
gi|62287137|sp|Q9US45.1|MED6_SCHPO RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6; AltName:
Full=RNA polymerase II mediator complex protein pmc5
gi|6689272|emb|CAB65615.1| mediator complex subunit Pmc5 [Schizosaccharomyces pombe]
Length = 216
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPL 73
A+ PP D+T I +R W+ + L + +YF+ S FY NNE L+M+S + L
Sbjct: 2 ASGAPPSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNAL 61
Query: 74 DI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
D+ SQL ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP
Sbjct: 62 DLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNA 121
Query: 130 CNVFSARIGRALHYIQKAFTTAASKLEKI 158
+ + R+ A + QKA T K+EK
Sbjct: 122 YTLLATRMLNATYCFQKALT----KIEKF 146
>gi|190346570|gb|EDK38685.2| hypothetical protein PGUG_02783 [Meyerozyma guilliermondii ATCC
6260]
Length = 301
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 10/112 (8%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDISQ-- 77
I ++ W+ + L + DYF+ S FYDRT NN+ LRM+ +IHP Q
Sbjct: 40 IQWKSPEWIQQFGLHTGNVLDYFSESPFYDRTSNNQVLRMQFQFQAPPANIHPQRYIQDK 99
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
L++MTGIE++++ + EP +VIRKQ R GPE +Y++ ++YQAP++
Sbjct: 100 LTEMTGIEFVIAYMREPDFWVIRKQNRTGPESTITEQDFYIIGANVYQAPKV 151
>gi|339240567|ref|XP_003376209.1| mediator of RNA polymerase II transcription subunit 6 [Trichinella
spiralis]
gi|316975087|gb|EFV58546.1| mediator of RNA polymerase II transcription subunit 6 [Trichinella
spiralis]
Length = 281
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Query: 41 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFV 98
L + + D FT +L FYD C NEQ+R I L LS++ G+EY+L EP LFV
Sbjct: 44 LSASNVLDCFTNTLNPFYDPNCLNEQVR---IQRLSSEILSRVHGVEYILLHAAEP-LFV 99
Query: 99 IRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
IRKQ R + VTP+ YY++ G++YQAP L +VF++R+ A+ ++ AF
Sbjct: 100 IRKQYRQPNQNVTPLEDYYIIGGTVYQAPDLSSVFNSRLQSAISNVRSAF 149
>gi|452822619|gb|EME29637.1| transcription regulator [Galdieria sulphuraria]
Length = 190
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+ + +RD +L +PL + + DYF+ S FYD +CNNEQ+RM+ + P L + G
Sbjct: 11 DLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDP---EVLYNLVG 67
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
EYM++ EP FV+ K R E+ + +Y++ G++YQAP L ++ +R+ + +
Sbjct: 68 TEYMVTNQQEPVFFVVEKVYRYNREETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFH 127
Query: 144 IQKAFTT--AASKLEKIG 159
I ++F + AS K+
Sbjct: 128 ISESFESLQQASLFSKVS 145
>gi|146418176|ref|XP_001485054.1| hypothetical protein PGUG_02783 [Meyerozyma guilliermondii ATCC
6260]
Length = 301
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDISQ--LSKMTGI 84
W+ + L + DYF+ S FYDRT NN+ LRM+ +IHP Q L++MTGI
Sbjct: 47 WIQQFGLHTGNVLDYFSESPFYDRTSNNQVLRMQFQFQAPPANIHPQRYIQDKLTEMTGI 106
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
E++++ + EP +VIRKQ R GPE +Y++ ++YQAP++
Sbjct: 107 EFVIAYMREPDFWVIRKQNRTGPESTITEQDFYIIGANVYQAPKV 151
>gi|255726044|ref|XP_002547948.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133872|gb|EER33427.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 262
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 67/109 (61%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ N + +YF+LS FYDRT NN+ L M+ + H ++LS+MTG+E+++
Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPMGMTFHQYFQTRLSEMTGVEFII 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP +++RKQKR P + YY++ ++YQAP++ +V S+R+
Sbjct: 80 AYTKEPDFWIVRKQKRLDPNNTITLQDYYIIGANVYQAPKIYDVLSSRL 128
>gi|71003976|ref|XP_756654.1| hypothetical protein UM00507.1 [Ustilago maydis 521]
gi|74704624|sp|Q4PHA6.1|MED6_USTMA RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|46095726|gb|EAK80959.1| hypothetical protein UM00507.1 [Ustilago maydis 521]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 12/124 (9%)
Query: 39 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEY 86
+PL + + YF S F+DR NNEQ+RM++I + +L + TG+E+
Sbjct: 53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEF 112
Query: 87 MLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQK 146
+L EP FV++K+ R P + TP+ YYV++ SIYQAP L ++ + R+ ++ ++
Sbjct: 113 VLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRM 172
Query: 147 AFTT 150
+ +T
Sbjct: 173 SLST 176
>gi|260944118|ref|XP_002616357.1| hypothetical protein CLUG_03598 [Clavispora lusitaniae ATCC 42720]
gi|238850006|gb|EEQ39470.1| hypothetical protein CLUG_03598 [Clavispora lusitaniae ATCC 42720]
Length = 267
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 10/124 (8%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDISQ--LSKMTGI 84
W+ + L + DYF S FYDRT NN+ LRM+ +IHP Q L++M G
Sbjct: 16 WIQQFGLHTGNVLDYFAESPFYDRTSNNQVLRMQFQFQQIPPNIHPQKYLQNKLTEMVGT 75
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
E++++ V EP +++RKQ+R P YY++ ++YQ+P++ ++ S+R+ + I
Sbjct: 76 EFVVAYVREPDFWIVRKQRRLDPNTALTEQDYYIIGANVYQSPKIYDILSSRMLSTVLSI 135
Query: 145 QKAF 148
+K+
Sbjct: 136 KKSI 139
>gi|270010564|gb|EFA07012.1| hypothetical protein TcasGA2_TC009982 [Tribolium castaneum]
Length = 179
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
MTG+EY+L V EP L+VIRKQ R P++VTP+ YY++ G +YQAP L +V ++R+ A
Sbjct: 1 MTGLEYVLLHVQEPILYVIRKQHRHSPQQVTPLADYYIIAGVVYQAPDLASVLNSRLLSA 60
Query: 141 LHYIQKAFTTAASKLE---KIGYV-DAENDGGTPLHSKAGKET-----IDLKEVKRVDQI 191
+H++Q +F AS GY D ++ T +K+ E L + +RVD +
Sbjct: 61 VHHLQSSFEEVASFARYHPSKGYSWDFKSQKNTTDKAKSKDEKPREEPSSLFQRQRVDML 120
Query: 192 LASLQRKL 199
L L +K
Sbjct: 121 LGELIKKF 128
>gi|331228097|ref|XP_003326716.1| hypothetical protein PGTG_07694 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305706|gb|EFP82297.1| hypothetical protein PGTG_07694 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 265
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP-- 72
A P P +D+ + +R W+ + PL + DYF LS FYDR N+ LRM+S+
Sbjct: 6 AGLPIPDSDLCHVQWRSLAWILEHGPLTESNAIDYFALSPFYDRKSTNQVLRMQSMFSGQ 65
Query: 73 ------LDISQLSKMTGIEYMLSEVM-----EPHLFVIRKQKRDGPEKVTPMLTYYVLDG 121
+ L + GIEY L E LF+I K++R G ++ P+ +YY+L
Sbjct: 66 PKMDPASEQEALRRFIGIEYALVLSRPEPDREGGLFIIEKRERKGYDEYYPIASYYILKT 125
Query: 122 SIYQAPQLCNVFSARIGRALHYIQKAFTTA 151
SIYQAP L SAR+ +L +Q+ A
Sbjct: 126 SIYQAPSLYATLSARVLTSLSALQRLLELA 155
>gi|402221039|gb|EJU01109.1| MED6-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 316
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 11/113 (9%)
Query: 47 FDYFTLSLFYDRTCNNEQLRMRSIHPL-----------DISQLSKMTGIEYMLSEVMEPH 95
DYF+LS+F+D+ N+ LRM++ H L + S+L K TG+E+ + P
Sbjct: 33 LDYFSLSIFWDKQSTNQVLRMQTQHALGPDGLGGSGVDEESELRKFTGVEFAVVHGRPPG 92
Query: 96 LFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
L+VI K++R P++V P+ Y++L+ +IY +P L +V S + LH++ +
Sbjct: 93 LWVIHKRERFSPDEVRPLAAYFILNNTIYPSPSLYSVLSTSLSTTLHHLSASL 145
>gi|388580154|gb|EIM20471.1| MED6-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 262
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 24 DMTGICFRDQLWLNTY--PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLD-----IS 76
D++ I +R +L Y L+ +I DYF+LS FYD+ NN+ ++M++I L
Sbjct: 6 DLSSIFWRAPEFLQYYGNTLNDALIMDYFSLSPFYDKKSNNQLIKMQNIANLSQPANIFD 65
Query: 77 QLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
QL TGIE++L+ P LF+I KQ R P + YY L+ +IY AP N +
Sbjct: 66 QLVHFTGIEFVLAHSEAPDLFIINKQYRHSPTDSRVLAVYYCLNNNIYAAPDGYNALGMK 125
Query: 137 IGRALHYIQKAFTTAASKL----EKIGY 160
A+ +Q + T L ++GY
Sbjct: 126 FHSAIFALQSSMKTLRDNLPAYNPRVGY 153
>gi|344231898|gb|EGV63777.1| MED6-domain-containing protein [Candida tenuis ATCC 10573]
Length = 198
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 14/127 (11%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI--------------SQLSK 80
W+N + L+ + DYF+ S FYDRT NN+ +M+ S+LS
Sbjct: 16 WINQFGLNTGNVLDYFSESPFYDRTSNNQVFKMQFQFQPPPPNLNTPLEYTKYFESKLSD 75
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
M GIE++++ + EP ++IRKQ R + V + +YY++ +IYQ+P+L + S+R+ +
Sbjct: 76 MVGIEFVIAYIREPDFWIIRKQNRFSRDNVQILQSYYIIGANIYQSPKLYRLISSRLLNS 135
Query: 141 LHYIQKA 147
+ I+ A
Sbjct: 136 TYSIKTA 142
>gi|50305387|ref|XP_452653.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74606924|sp|Q6CTT6.1|MED6_KLULA RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|49641786|emb|CAH01504.1| KLLA0C10186p [Kluyveromyces lactis]
Length = 268
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 42/157 (26%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ T+ L + + DYF+ S F+D+T NN+ ++M
Sbjct: 16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAG 75
Query: 68 --------RS-------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTP 112
RS +H + +L KM GIEY+L V EP L++IRKQ+RDGP K T
Sbjct: 76 AGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTT 135
Query: 113 MLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFT 149
+ YYV+ ++YQ+P + + R+ +++ + +
Sbjct: 136 LRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLS 172
>gi|390604247|gb|EIN13638.1| MED6-domain-containing protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 163
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 19 PPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI--- 75
PP + + + L N PL F+YF S FYD+ NN+ LRM+++H I
Sbjct: 8 PPDDSSSQSFIWHEWLQANG-PLTTQNAFEYFATSRFYDKQSNNQVLRMQTMHTGQIMTP 66
Query: 76 ----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCN 131
+L + TG+E+ L P LF+I K++R P +V P+ Y++++ IY +P +
Sbjct: 67 AQEEEELKRFTGVEFALVHAAAPTLFIIHKRERLSPSEVRPLAVYFIMNNRIYPSPDVYA 126
Query: 132 VFSARIGRALHYIQKAFTT 150
V + R+ +H +Q + T
Sbjct: 127 VVANRLLTTVHSLQSSLDT 145
>gi|149240581|ref|XP_001526166.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450289|gb|EDK44545.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 291
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMT 82
++ T L+ + +YF+LS FYDRT NN+ L M+ + H ++L +MT
Sbjct: 14 FIQTRGLNTTNVLEYFSLSPFYDRTSNNQVLMMQFQYQQVQIPPRMTFHQYFQNRLQEMT 73
Query: 83 GIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 142
G+E++++ V EP ++IRKQ+R P + YY++ ++YQAP++ +V +R+ ++
Sbjct: 74 GVEFVIALVREPDFWIIRKQRRISPTSTNTLQDYYIVGANVYQAPRIYDVLLSRMLASVL 133
Query: 143 YIQKAFTT 150
++K+ T
Sbjct: 134 ALKKSAKT 141
>gi|119601448|gb|EAW81042.1| mediator of RNA polymerase II transcription, subunit 6 homolog
(yeast), isoform CRA_e [Homo sapiens]
Length = 106
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V
Sbjct: 4 LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSV 63
Query: 133 FSARIGRALHYIQKAFTTAAS 153
++R+ A+H IQ AF A S
Sbjct: 64 INSRVLTAVHGIQSAFDEAMS 84
>gi|358057343|dbj|GAA96692.1| hypothetical protein E5Q_03363 [Mixia osmundae IAM 14324]
Length = 190
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 48 DYFTLSLFYDRTCNNEQLRMRSIH---PL--DISQLSKMTGIEYMLSEVMEPHLFVIRKQ 102
DYF LS F+D NN+ LRM++++ PL + QL + GIE+ + P LFVI K+
Sbjct: 34 DYFALSPFWDNRSNNQTLRMQTMYSGVPLVNEAEQLKQFIGIEFAIVHAQPPGLFVIHKR 93
Query: 103 KRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
KR + P+ YYVL G++YQAP L V S+R+
Sbjct: 94 KRTSQHEAQPIAAYYVLHGNVYQAPDLYAVLSSRL 128
>gi|254567842|ref|XP_002491031.1| Subunit of the RNA polymerase II mediator complex [Komagataella
pastoris GS115]
gi|238030828|emb|CAY68751.1| Subunit of the RNA polymerase II mediator complex [Komagataella
pastoris GS115]
gi|328352441|emb|CCA38840.1| Mediator of RNA polymerase II transcription subunit 6 [Komagataella
pastoris CBS 7435]
Length = 215
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 14/129 (10%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSI-------------HPLDISQLSKM 81
W+ T+ L + + +YF+ S F+DR+ NN+ L+M+S H L +L KM
Sbjct: 16 WIQTFGLRTDNVLEYFSQSPFFDRSSNNQVLKMQSQFNEQFQIQLQQNPHFLQ-QELKKM 74
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+E++++ EP+ +VIRKQ R P + + YY++ ++Y AP L +V S+R+
Sbjct: 75 KGVEFIVAYTQEPNFWVIRKQFRKSPNEADALNDYYIIGANVYMAPVLNDVISSRLLSTT 134
Query: 142 HYIQKAFTT 150
++KA T
Sbjct: 135 LALRKAMNT 143
>gi|294659592|ref|XP_461994.2| DEHA2G10318p [Debaryomyces hansenii CBS767]
gi|218511687|sp|Q6BIH7.2|MED6_DEBHA RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|199434084|emb|CAG90468.2| DEHA2G10318p [Debaryomyces hansenii CBS767]
Length = 257
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 10/115 (8%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQ 77
I +++ W+ + L + DYF+ S FYDRT NN+ LRM+ +I+P S+
Sbjct: 9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSK 68
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L +MTGIE++++ EP ++IRKQ R P++V YY++ +IYQAP++ ++
Sbjct: 69 LVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDI 123
>gi|342319781|gb|EGU11727.1| Mediator of RNA polymerase II transcription subunit 6 [Rhodotorula
glutinis ATCC 204091]
Length = 243
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 45 MIFDYFTLSLFYDRTCNNEQLRMRSIHPL-------DISQLSKMTGIEYMLSEVMEPHLF 97
+ +YF+LS F+D+ NN QLRM+ + + ++L + G+E++++ P LF
Sbjct: 31 LAMEYFSLSPFFDKASNNAQLRMQMMFSRGGMEGVDEEAELRRFVGLEFVIAYSTPPDLF 90
Query: 98 VIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
++ K+ R P T + +Y+L+G++YQAP L V + RI +LH + +F +
Sbjct: 91 IVHKRNRTSPTDSTVVGAFYILNGNVYQAPTLFEVLNERILTSLHALSTSFDS 143
>gi|384490540|gb|EIE81762.1| hypothetical protein RO3G_06467 [Rhizopus delemar RA 99-880]
Length = 140
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 12/125 (9%)
Query: 24 DMTGICFRDQLWLNTYPLDRNM--IFDYFTLSLFYDRTCNNEQLRM-------RSIHPLD 74
D+TG+ +RD WL +N + DYF LS F+DR CNN+ L M R +
Sbjct: 9 DLTGVEWRDTNWLERVGGFQNQQTVLDYFALSPFWDRQCNNQVLAMQTQYNDLRQPYEAT 68
Query: 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGP--EKVTPMLTYYVLDGSIYQAPQLCNV 132
I L KMTG+E+ + +P ++VI+K+ R GP + V P+ TYY+ ++YQ+P + +V
Sbjct: 69 IQALRKMTGVEFAIVH-EQPPVWVIQKRYRRGPAEDDVNPIATYYITGANVYQSPTIYSV 127
Query: 133 FSARI 137
+ R+
Sbjct: 128 IANRL 132
>gi|449019857|dbj|BAM83259.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 192
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Query: 11 EGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSI 70
E P G + + + D WL YPL + YF+ S FYD TCNNE +RM+ +
Sbjct: 3 ELNSPLGERAQGASLAHVVWSDPQWLERYPLTFENVLTYFSRSPFYDPTCNNELVRMQ-M 61
Query: 71 HP------LDISQ-----LSKMTGIEYM-LSEVMEPHLFVIRKQKRDGPEKVTPMLTYYV 118
HP L +Q L M G+EY+ L LF+IRKQ R ++V YY+
Sbjct: 62 HPELQGEMLYYTQREEELLLGMQGVEYVPLCSSDAHELFIIRKQVRRSADEVHVTNLYYI 121
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKE 178
L G +Y+AP V R+ ++ ++ ++ L K Y G P + G E
Sbjct: 122 LYGQVYEAPAFSTVLLVRLRQSADFLVRSLGLLRQWLSKKEY-------GEPGATGHGHE 174
Query: 179 -TIDLKEVKRVDQ 190
T+ L+ +++ Q
Sbjct: 175 DTLLLQLLRKAQQ 187
>gi|410563143|pdb|4H61|A Chain A, Structure Of The Schizosaccharomyces Pombe Mediator
Subunit Med6
gi|410563144|pdb|4H61|B Chain B, Structure Of The Schizosaccharomyces Pombe Mediator
Subunit Med6
Length = 175
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 24 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQ 77
D+T I +R W+ + L + +YF+ S FY NNE L+M+S + LD+ SQ
Sbjct: 5 DLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQ 64
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
L ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP + + R+
Sbjct: 65 LKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRM 124
Query: 138 GRALHYIQKAFTTAASKLEKI 158
A + QKA T K+EK
Sbjct: 125 LNATYCFQKALT----KIEKF 141
>gi|385302295|gb|EIF46433.1| rna polymerase ii mediator complex [Dekkera bruxellensis AWRI1499]
Length = 218
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLD--ISQLSKMTGI 84
W+N + L + + +YF S F+DRT NN+ L+M+ +++P + + L KM G+
Sbjct: 19 WVNAFGLRTDNVLEYFAQSPFFDRTSNNQVLKMQHQFSDANYTVNPYEMILKDLKKMKGV 78
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
E++++ V EP +VIRKQ R + + +Y++ S+Y AP + + S+R+
Sbjct: 79 EFVIAMVREPDFWVIRKQXRHSETETQTIADFYIIGSSVYMAPSIKAILSSRL 131
>gi|320583879|gb|EFW98092.1| Subunit of the RNA polymerase II mediator complex [Ogataea
parapolymorpha DL-1]
Length = 220
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH--------PLD- 74
++ + +R W+NT+ L + + +YF+ S F+DRT NN+ L+M++ P D
Sbjct: 5 NLDELQWRSPEWVNTFGLRTDNVLEYFSQSPFFDRTSNNQVLKMQNQFTDTNYYNKPYDQ 64
Query: 75 -ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVF 133
+ L KM G+E++++ V EP ++IRKQ R + + YY++ S+Y AP ++
Sbjct: 65 LLQDLRKMKGVEFVIAMVREPDFWIIRKQNRLSENETVTISDYYIIGSSVYMAPITHSIL 124
Query: 134 SARIGRALHYIQKA 147
S+R ++ ++ A
Sbjct: 125 SSRFLASVLSLRNA 138
>gi|443896405|dbj|GAC73749.1| RNA polymerase II transcriptional regulation mediator [Pseudozyma
antarctica T-34]
Length = 320
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 18/129 (13%)
Query: 39 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP------------LDISQLSKMTGIEY 86
+PL + + YF S F+DR NNEQ+RM++I + +L + TG+E+
Sbjct: 111 HPLSEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLTGGMGARQEEQELKRFTGLEF 170
Query: 87 MLSEVMEPHLFVIRKQKRDGPE------KVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
+L P FVI+K+ R P + TP+ YY+++ SIYQAP + +V + R+
Sbjct: 171 VLVHARPPLCFVIQKRWRTSPTESKSVLRATPLAAYYIVNDSIYQAPDMYSVLATRLQST 230
Query: 141 LHYIQKAFT 149
++ +Q + +
Sbjct: 231 VYGLQSSLS 239
>gi|388852083|emb|CCF54259.1| uncharacterized protein [Ustilago hordei]
Length = 267
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 38 TYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP------------LDISQLSKMTGIE 85
+PL + + YF S F+DR NNEQ+RM++I + +L + TG+E
Sbjct: 53 NHPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLTGGMGARQEEEELKRFTGLE 112
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
++L P FV++K+ R + TP+ YY+++ SIYQAP + ++ + R+ ++ ++
Sbjct: 113 FVLVHSRAPLCFVLQKRWRTSATETTPLAAYYIINDSIYQAPDMYSILATRLQSTVYGLK 172
Query: 146 KAFT 149
+ +
Sbjct: 173 SSLS 176
>gi|256016509|emb|CAR63550.1| putative Mediator of RNA polymerase II transcription subunit 6
[Angiostrongylus cantonensis]
Length = 249
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 13 APPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLS--LFYDRTCNNEQLRMRSI 70
PP P P I F++ W + N + +YF S FYD++ NE +RM++I
Sbjct: 7 GPPVVRPNP----LHITFKNPNWPANFITPENAL-EYFCNSDNAFYDKSSCNENVRMQNI 61
Query: 71 -HPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
PL+ LS MTGI+Y+L +P L+VI K +R+ + VTP+ YY+++G++YQAP +
Sbjct: 62 SRPLEECLLS-MTGIQYVLWSA-QPPLYVICKHRRNNMQNVTPLAYYYIINGTVYQAPDV 119
Query: 130 CNVFSARIGRALHYIQKAF 148
+R+ A+ ++ AF
Sbjct: 120 YTFVQSRLLGAVEPLKNAF 138
>gi|328851052|gb|EGG00211.1| hypothetical protein MELLADRAFT_93773 [Melampsora larici-populina
98AG31]
Length = 344
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 21 PGTDMTGICFRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH----PLDI 75
P D+ + +R W L PL+ +YF+ S FYDR N+ LRM+S+ PLD
Sbjct: 11 PSADLCHVQWRSLAWVLENGPLNETNAMEYFSHSPFYDRRSTNQVLRMQSMFSGQPPLDS 70
Query: 76 SQ----LSKMTGIEYML-----SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQA 126
L K+ GIEY L + E LFVI K+ R PE+ P+ +YY+L IYQ+
Sbjct: 71 KAEKEALKKLVGIEYTLVVSKPEDDREGGLFVIEKRDRKNPEESYPITSYYILKTCIYQS 130
Query: 127 PQL 129
P
Sbjct: 131 PSF 133
>gi|45184769|ref|NP_982487.1| AAL055Cp [Ashbya gossypii ATCC 10895]
gi|74695866|sp|Q75EY3.1|MED6_ASHGO RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|44980115|gb|AAS50311.1| AAL055Cp [Ashbya gossypii ATCC 10895]
gi|374105686|gb|AEY94597.1| FAAL055Cp [Ashbya gossypii FDAG1]
Length = 235
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 32/134 (23%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------- 69
W+ ++ L + + DYF+ S F+D+T NN ++M+
Sbjct: 16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQA 75
Query: 70 ------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSI 123
+ L +L+K+ GIEY+L+ V EP +V+RKQ+R G ++VT + YY++ ++
Sbjct: 76 IWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANV 134
Query: 124 YQAPQLCNVFSARI 137
YQAP +V R+
Sbjct: 135 YQAPTAYSVVQNRL 148
>gi|363750602|ref|XP_003645518.1| hypothetical protein Ecym_3202 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889152|gb|AET38701.1| Hypothetical protein Ecym_3202 [Eremothecium cymbalariae
DBVPG#7215]
Length = 251
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 33/147 (22%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------- 69
W+ ++ L + DYF+ S F+D+T NN+ ++M+
Sbjct: 16 WIQSFGLRTENVLDYFSQSPFFDKTSNNQVVKMQQQFSQQLAPSSSQQAGRSKPAVSPQR 75
Query: 70 --------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDG 121
+ L +L+K+ G+EY+L+ V EP +VIRKQ R TP+ YY++
Sbjct: 76 QEIWDRYPSYALLEQELAKLKGVEYILAHVREPDFWVIRKQNRQNEINTTPLNDYYIIGA 135
Query: 122 SIYQAPQLCNVFSARIGRALHYIQKAF 148
++YQ+P + V R+ +++ KA
Sbjct: 136 NVYQSPTVYKVVHNRLLSTNYHLSKAL 162
>gi|344301415|gb|EGW31727.1| mediator of RNA polymerase II transcription subunit 6 [Spathaspora
passalidarum NRRL Y-27907]
Length = 268
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L N + +YF LS FYDRT NN+ L M+ + H S+L++MTGIE+++
Sbjct: 20 LHSNNVLEYFALSPFYDRTSNNQVLMMQFQYQQIQIPMNMTFHQYFQSRLTEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
+ EP +++RKQ+R P + YY++ ++YQAP++
Sbjct: 80 AFTREPDFWIVRKQRRLDPTSTLILQDYYIIGANVYQAPRI 120
>gi|296417310|ref|XP_002838301.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634229|emb|CAZ82492.1| unnamed protein product [Tuber melanosporum]
Length = 320
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 21/159 (13%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQL-RMRSIHP- 72
A P P T + +RDQ+W + P+ DYF +S F+D T NN L + +P
Sbjct: 2 ATIPRPKTPIDETLWRDQVWYRQWGPITEVTAMDYFRMSTFFDHTSNNGTLFQQMQFNPQ 61
Query: 73 ---------LDISQLSKMTGIEYMLSE-VMEPHLFVIRKQKRDGP--------EKVTPML 114
L +L+ MTG+EYML+ E ++VIRKQ R P + +T +
Sbjct: 62 FREELRTPELFNRRLATMTGVEYMLAAGSAESGVWVIRKQLRKSPRYDDNGREDDITVLA 121
Query: 115 TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 153
YY++ +IYQAP + V R+ + ++ A T A +
Sbjct: 122 AYYIIGENIYQAPSIGAVLQNRMLTTISALRSALTVATN 160
>gi|341880891|gb|EGT36826.1| hypothetical protein CAEBREN_28633 [Caenorhabditis brenneri]
gi|341883502|gb|EGT39437.1| CBN-MDT-6 protein [Caenorhabditis brenneri]
Length = 245
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + N + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 19 VSFRNPQWPPNFITKEN-VLDYFCNQANTFYEMNSCNQQIRMQNITNRTVEECLRTMQGI 77
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ + V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 78 QYVL-WYSQPPLFIICKQRRNSVQNVSPISYYYVINGSVHQAPDMYSLVQSRLLGALEPL 136
Query: 145 QKAF 148
+ AF
Sbjct: 137 RNAF 140
>gi|268558756|ref|XP_002637369.1| C. briggsae CBR-MDT-6 protein [Caenorhabditis briggsae]
gi|74789362|sp|Q60WM1.1|MED6_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
Length = 246
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 12 GAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRS 69
G P ++ P M+ FR+ W + ++R+ + DYF ++FY+ N+Q++M++
Sbjct: 6 GPPSSSKQEPTMFMS---FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQN 61
Query: 70 IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQ 128
I + + L M GI+Y+L +P L+++ KQ+R+ V+P+ YYV++GS++QAP
Sbjct: 62 ITNRSVDECLRNMQGIQYVL-WYSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPD 120
Query: 129 LCNVFSARIGRALHYIQKAF 148
+ + +R+ AL ++ AF
Sbjct: 121 MHTLVQSRLLGALEPLRNAF 140
>gi|85690969|ref|XP_965884.1| hypothetical protein ECU01_0500 [Encephalitozoon cuniculi GB-M1]
gi|74622163|sp|Q8SWN5.1|MED6_ENCCU RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|19068451|emb|CAD24919.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
Length = 177
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGI 84
I F DQ +L + PLD + +YF+ S FYD++CNNE L+M++ LD S+L M GI
Sbjct: 7 SISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGI 66
Query: 85 EYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++
Sbjct: 67 FYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
>gi|367014515|ref|XP_003681757.1| hypothetical protein TDEL_0E03030 [Torulaspora delbrueckii]
gi|359749418|emb|CCE92546.1| hypothetical protein TDEL_0E03030 [Torulaspora delbrueckii]
Length = 276
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 66/255 (25%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + + DYF S F+++T NN+ ++M
Sbjct: 15 WIQAFGLRTDNVLDYFAESPFFNKTSNNQVIKMQRQFSQVPTDPAAQDGKQRGNESEVMA 74
Query: 68 -------------------RSI------HPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQ 102
RS+ H + +LSKM GIEY+L+ + EP +VI+KQ
Sbjct: 75 GIPLHQQEQNEFGHLEPTRRSLLSRYPAHAMLERELSKMKGIEYVLAYLQEPDFWVIKKQ 134
Query: 103 KRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVD 162
R GP++V + YYV+ ++YQ+P + + +R+ A +++ T S+L K+
Sbjct: 135 NRLGPQQVQVLQDYYVIGANVYQSPTVFKIVQSRVMAASYHL----TETLSQLHKL---- 186
Query: 163 AENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTEEAEK 222
T G + L+ +S Q PP P P QT + +
Sbjct: 187 ------TEFQPAQGVQFKRLQSTTITSNGTSSSQNSAPPTAPANGPPSTVNTAQTAQTAR 240
Query: 223 DPETQQTAEPQPPAI 237
+ + +P +
Sbjct: 241 TGQLEHNGNHEPQEV 255
>gi|449329822|gb|AGE96091.1| hypothetical protein ECU01_0500 [Encephalitozoon cuniculi]
Length = 177
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGI 84
I F DQ +L + PLD + +YF+ S FYD++CNNE L+M++ LD S+L M GI
Sbjct: 7 NISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGI 66
Query: 85 EYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++
Sbjct: 67 FYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
>gi|396080752|gb|AFN82373.1| MED6 RNA polymerase II transcriptional regulation mediator
[Encephalitozoon romaleae SJ-2008]
Length = 177
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGI 84
I F DQ +L++ LD I +YF+ S FYD++CNNE L+M++ LD S+LS M GI
Sbjct: 7 SISFFDQRFLSSKSLDTTNILEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLSSMIGI 66
Query: 85 EYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
Y + S E LFVIRK G T + YYV+ G +Y AP +++ R+G ++
Sbjct: 67 FYEVESSNNERTLFVIRKAYNHGDTTETLGM-YYVIHGHVYAAPTNYSIYRCRMGDSM 123
>gi|50286307|ref|XP_445582.1| hypothetical protein [Candida glabrata CBS 138]
gi|74610712|sp|Q6FW12.1|MED6_CANGA RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|49524887|emb|CAG58493.1| unnamed protein product [Candida glabrata]
Length = 302
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 49/152 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM----------------------RSIHP 72
W+ + L + + DYF S F+D+T NN ++M R H
Sbjct: 15 WIQAFGLRTDNVLDYFAESPFFDKTANNHVIKMQRQFSQLPNNGAAAGSMNPETMRDAHS 74
Query: 73 LDISQ---------------------------LSKMTGIEYMLSEVMEPHLFVIRKQKRD 105
D+ Q L K+ GIEY+L+ V EP +VI+KQ+R
Sbjct: 75 EDMGQEQEFSYVDPIRRAILEKYVVHAFLERELMKVRGIEYVLANVREPDFWVIKKQRRT 134
Query: 106 GPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
P + P+ TYY++ ++YQ+P + + +R+
Sbjct: 135 SPTAIEPLQTYYIVGANVYQSPTVFKIVQSRL 166
>gi|72001326|ref|NP_504791.3| Protein MDT-6 [Caenorhabditis elegans]
gi|75022853|sp|Q9N337.1|MED6_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=CeMED6; AltName: Full=Mediator complex
subunit 6; AltName: Full=c-MED6; Short=MED-6
gi|351061872|emb|CCD69750.1| Protein MDT-6 [Caenorhabditis elegans]
Length = 250
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGI 77
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 78 QYVL-WYSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPL 136
Query: 145 QKAF 148
+ AF
Sbjct: 137 RNAF 140
>gi|2618736|gb|AAB84362.1| RNA polymerase transcriptional regulation mediator [Caenorhabditis
elegans]
Length = 246
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 15 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGI 73
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 74 QYVL-WYSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPL 132
Query: 145 QKAF 148
+ AF
Sbjct: 133 RNAF 136
>gi|402876609|ref|XP_003902051.1| PREDICTED: mediator of RNA polymerase II transcription subunit 6
[Papio anubis]
Length = 182
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGP--EKVTPMLTYYVLDGSIYQ 125
GIEY+L EP LF+IRKQ+R P +KV P SI+Q
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQDKVRPKAKRKEEPSSIFQ 109
>gi|392577277|gb|EIW70406.1| hypothetical protein TREMEDRAFT_28815 [Tremella mesenterica DSM
1558]
Length = 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM--RSIHPLDISQLSK------MTGIEYMLSEVMEPH 95
++ DYF S F+D+ NN LR R HP K +G EY++S + P
Sbjct: 35 DLAMDYFAFSPFWDKNSNNNVLRTQRRVEHPTYGHAEEKYELPAFTSGFEYIISHSLPPE 94
Query: 96 LFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 153
LFVI +++ + ++ Y++LDG +Y P L NV S R+ A ++ +F+T +S
Sbjct: 95 LFVIHRREVENGKRDRVSAVYFILDGKVYPTPSLYNVLSVRLRNATSLLESSFSTLSS 152
>gi|312072946|ref|XP_003139298.1| hypothetical protein LOAG_03713 [Loa loa]
gi|307765538|gb|EFO24772.1| hypothetical protein LOAG_03713 [Loa loa]
Length = 313
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 46 IFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF ++FYD + N+ +RM++++ L M GI+Y + P L+VI KQ+
Sbjct: 40 VLDYFCDPGNVFYDVSSCNQHIRMQNLNRPLHDCLQSMQGIQYTVVGTFPP-LYVIMKQR 98
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS----KLEKIG 159
R+ P VTP+ YY+++G++YQ P + +++ + +++A A + + K
Sbjct: 99 RNSPTNVTPLAYYYIVNGTVYQCPDIYTYIQSKLISIVDPLRQALEQARNFNRFNIAKGY 158
Query: 160 YVDAENDGGTPLHSKAGKET------IDLKEVKRVDQILASLQRKLPP 201
Y + ++ G + +E + R DQIL L K PP
Sbjct: 159 YWEFKDSNGETIKKAVEEEEKPQLARSTFYQRTRTDQILRELFAKFPP 206
>gi|324521637|gb|ADY47895.1| Mediator of RNA polymerase II transcription subunit 6, partial
[Ascaris suum]
Length = 328
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 7 GANLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQ 64
G N+ G T + F++ W + L+ + + DYF ++FYD + N+
Sbjct: 23 GPNVGGGSSGTSHQQITSLLHQSFKNPNWPPNF-LNADNVLDYFCDPSNVFYDVSSCNQH 81
Query: 65 LRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIY 124
LRM++++ L M GI++ + P L+VI KQ+R+ P VTP+ YYV++G++Y
Sbjct: 82 LRMQNLNRPLRECLQSMQGIQFAVVGANHP-LYVIVKQRRNSPTNVTPLCYYYVVNGTVY 140
Query: 125 QAPQLCNVFSARIGRALHYIQKAFTTA 151
Q P + +++ A+ +++A A
Sbjct: 141 QCPDIYTFVQSKLIGAVDPLRRALEQA 167
>gi|303388051|ref|XP_003072260.1| MED6 RNA polymerase II transcriptional regulation mediator
[Encephalitozoon intestinalis ATCC 50506]
gi|303301399|gb|ADM10900.1| MED6 RNA polymerase II transcriptional regulation mediator
[Encephalitozoon intestinalis ATCC 50506]
Length = 176
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGIE 85
+ F DQ +L++ PLD + +YF+ S FYD++CNNE L+M++ LD S+LS M G+
Sbjct: 7 VSFVDQRFLSSRPLDDANVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLSSMIGVF 66
Query: 86 YML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
Y S E LFVIRK G T + YY++ G IY AP +++ R+ ++
Sbjct: 67 YEAESSNNEKTLFVIRKAYNHGDTTET-LGMYYIIHGHIYAAPTNYSIYRCRMSDSM 122
>gi|170594491|ref|XP_001901997.1| MED6 mediator sub complex component family protein [Brugia malayi]
gi|158590941|gb|EDP29556.1| MED6 mediator sub complex component family protein [Brugia malayi]
Length = 330
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 46 IFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF ++FYD + N+ +RM++++ L M GI+Y + P L+VI KQ+
Sbjct: 60 VLDYFCDPGNVFYDVSSCNQHIRMQNLNRPLHECLQSMQGIQYTVVGTFPP-LYVIMKQR 118
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS----KLEKIG 159
R+ P VTP+ YY+++G++YQ P + +++ + +++A A + + K
Sbjct: 119 RNSPTNVTPLAYYYIVNGTVYQCPDIYTYIQSKLISIVDPLRQALEQARNFNRFNIAKGY 178
Query: 160 YVDAENDGGTPLHSKAGKET------IDLKEVKRVDQILASLQRKLPP 201
Y + ++ G + +E + R DQIL L K PP
Sbjct: 179 YWEFKDSXGETVKKATEEEEKPQLARSTFYQRTRTDQILRELFAKFPP 226
>gi|326430583|gb|EGD76153.1| hypothetical protein PTSG_00859 [Salpingoeca sp. ATCC 50818]
Length = 234
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 46 IFDYF---TLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQ 102
+ DYF + FY+R NE+ + I P +L G+EY +S +P L VIRKQ
Sbjct: 7 VLDYFGHPDSNPFYERESLNERQKQEGIDP---ERLKNYEGVEYAVSHAQDPVLQVIRKQ 63
Query: 103 --KRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGY 160
+R P K P+ YYV G+ +QAP +C+V S+R+ + +++KA + A ++ K
Sbjct: 64 LTQRGRPPK--PLAYYYVARGNAFQAPDVCSVVSSRLASTMFHLRKALSIAREQVAKSED 121
Query: 161 VDA 163
DA
Sbjct: 122 TDA 124
>gi|300706687|ref|XP_002995589.1| hypothetical protein NCER_101460 [Nosema ceranae BRL01]
gi|239604755|gb|EEQ81918.1| hypothetical protein NCER_101460 [Nosema ceranae BRL01]
Length = 162
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM----RSIHPLDISQLSK 80
M ICF D ++L++ PL I DYF+ S FYD++ NE L+M R I L +SK
Sbjct: 1 MDNICFVDHVFLSSNPLTSENILDYFSTSPFYDKSSINEILKMQNQYRGISTLQ-QDVSK 59
Query: 81 MTGIEYMLSEV-MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
G+ Y+L + LFVIR+ D + +YV+ G IY+AP +F+ R+
Sbjct: 60 HKGVFYVLDHYNTDNTLFVIRQSDND-----VNLAYFYVIHGHIYKAPTNNKIFNTRVND 114
Query: 140 ALHYIQKAFTTAASKL 155
Y+ + + KL
Sbjct: 115 IYWYLNEILDSYLDKL 130
>gi|410079318|ref|XP_003957240.1| hypothetical protein KAFR_0D04570 [Kazachstania africana CBS 2517]
gi|372463825|emb|CCF58105.1| hypothetical protein KAFR_0D04570 [Kazachstania africana CBS 2517]
Length = 243
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 30/133 (22%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------- 69
W+ + L + + DYF S F+D+T NN+ ++M+
Sbjct: 15 WIQAFGLRTDNVLDYFAESPFFDKTSNNQVIKMQRQFQQEPSQEAGSDDFGHLDAKRREI 74
Query: 70 -----IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIY 124
++ + +L K+ GIEY+L +V EP + IRKQ R K + YYV+ ++Y
Sbjct: 75 LIKYPVYAMLERELMKLKGIEYVLVQVREPDFWTIRKQNRHSINKTETLQDYYVIGANVY 134
Query: 125 QAPQLCNVFSARI 137
Q+P + N+ R+
Sbjct: 135 QSPTIFNIVMNRL 147
>gi|402465347|gb|EJW01210.1| hypothetical protein EDEG_04059 [Edhazardia aedis USNM 41457]
Length = 192
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 29 CFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHP--------LDISQLSK 80
CFRD+ +L+ L + YF+ S FYD++C NE ++M++ + +D +L +
Sbjct: 9 CFRDEFFLSANILTSKNVLSYFSASQFYDQSCLNEVIKMQTKYTGNEITDDEID-EKLKE 67
Query: 81 MTGIEYMLSEVM-EPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAP 127
M G++Y+L++ + E LF+I K R + + YYVL+G+IYQ+P
Sbjct: 68 MVGVQYILAKSLDEDQLFIIYKIDRFTRVEYDVLQIYYVLNGNIYQSP 115
>gi|403214405|emb|CCK68906.1| hypothetical protein KNAG_0B04710 [Kazachstania naganishii CBS
8797]
Length = 280
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 50/164 (30%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR-------------------------- 68
W+ + L + + DYF+ S F+D+T NN ++M+
Sbjct: 15 WIQAFGLRTDNVLDYFSESPFFDKTSNNHVIKMQRQFSQLPVDGMPQPQGPGGTAPDGSK 74
Query: 69 ---------------------SIHPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR 104
+PL ++ +L K+ G+EY+L+ V EP +V++KQ+R
Sbjct: 75 SATLGDSQEFSHLDPLRREVLGKYPLYMTMERELCKLRGVEYVLACVREPDFWVVKKQRR 134
Query: 105 DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
P + PM YY++ ++YQ+P + + R+ A +++
Sbjct: 135 LSPRRTEPMQDYYIIGANVYQSPSMFKILQNRMMSASYHLSNTL 178
>gi|429966172|gb|ELA48169.1| hypothetical protein VCUG_00407 [Vavraia culicis 'floridensis']
Length = 194
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 15 PAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS--IHP 72
P GT M+ + +Q WL T PL + YF LS FYDR+ NE L+M++ +
Sbjct: 13 PLFHVHIGTPMSDQTYINQQWLETNPLTTETVLTYFALSPFYDRSSLNEILKMQTQFTNF 72
Query: 73 LDIS-QLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCN 131
LD S +L+++ G++Y++ + + F+ + K+ E + YYVL G+IY+
Sbjct: 73 LDFSKKLTELNGVKYLVDQRNDV-FFIYKIHKQKDNEDLLDF--YYVLFGTIYKGATTNG 129
Query: 132 VFSARIGRALHYIQKA 147
+F R+ L +I ++
Sbjct: 130 IFRTRVFNLLFFINES 145
>gi|444313915|ref|XP_004177615.1| hypothetical protein TBLA_0A02960 [Tetrapisispora blattae CBS 6284]
gi|387510654|emb|CCH58096.1| hypothetical protein TBLA_0A02960 [Tetrapisispora blattae CBS 6284]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 52/155 (33%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------- 69
W+ + L + + DYF+ S F+++T +N+ +RM+
Sbjct: 16 WIQAFGLYTDNVLDYFSESPFFNKTSSNQSIRMQRQFQADANGAGPGAGQGPDMLGVLDP 75
Query: 70 --------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+H QL+K+ GIEY+L+ V EP L+VIRKQ+
Sbjct: 76 HHNETDKLLLQHVRDPERRAILTRYPVHAQLERQLAKVGGIEYVLAHVREPDLWVIRKQR 135
Query: 104 RDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARI 137
RD T +L TYYV+ S+YQAP + + +R+
Sbjct: 136 RDIQTMNTSILQTYYVMGPSVYQAPSIHALIESRL 170
>gi|403375738|gb|EJY87844.1| RNA polymerase transcriptional regulation mediator subunit 6-like
protein [Oxytricha trifallax]
Length = 241
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 24 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMT 82
D IC+ D +L Y + ++ +YF S FY+R NNE+LR +++ PLD +L + T
Sbjct: 39 DYGVICYFDTGFLQYYTRVTKDNAMEYFCNSPFYERDSNNERLRQQNL-PLD--KLKEFT 95
Query: 83 GIEYMLSEVM-EPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+E+ ++ E ++++I K+ R+ P + + +Y+L+G+I+QA + A+ A
Sbjct: 96 GVEFAITHANDEQNVYLIEKRYRNSPIDTSTITAFYILNGTIFQAHTFKKIIDAKAQNAA 155
Query: 142 HYIQKAF 148
+ +AF
Sbjct: 156 FLLNQAF 162
>gi|429962205|gb|ELA41749.1| hypothetical protein VICG_01253 [Vittaforma corneae ATCC 50505]
Length = 172
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDIS-QLSKMTGI 84
+CF DQ +L L I YF+ S FYD+ C NE L+M+S +DIS +L+ + GI
Sbjct: 5 SLCFYDQNFLTQNQLTPENIIQYFSFSPFYDKGCLNEILKMQSQFANIDISHKLTTLPGI 64
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
Y+L E LF+I K K++ +K + YY + G IY AP V +++ L Y+
Sbjct: 65 YYIL-EHHNTDLFIIAK-KKNTDQKTATLKVYYCMYGYIYCAPTARAVSNSKAIDCLSYL 122
Query: 145 QKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 198
+A +K E+I D G L + G +VK V + L + K
Sbjct: 123 NEAL----NKYEEIKSFDWLR--GFQLRADEGNSESQADDVKFVFETLHDFEAK 170
>gi|367001841|ref|XP_003685655.1| hypothetical protein TPHA_0E01260 [Tetrapisispora phaffii CBS 4417]
gi|357523954|emb|CCE63221.1| hypothetical protein TPHA_0E01260 [Tetrapisispora phaffii CBS 4417]
Length = 328
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 77 QLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
+LSKMTG+EY+L+ V EP L++I+KQ R E + YY++ ++YQ+P N+ +R
Sbjct: 136 ELSKMTGLEYVLAYVREPDLWIIKKQNRISAETTQTLQAYYIIGANVYQSPSAFNIIQSR 195
Query: 137 IGRALHYI 144
+ A ++I
Sbjct: 196 LLSASYHI 203
>gi|308503859|ref|XP_003114113.1| CRE-MDT-6 protein [Caenorhabditis remanei]
gi|308261498|gb|EFP05451.1| CRE-MDT-6 protein [Caenorhabditis remanei]
Length = 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W N + +YF + FY+ N+Q+ M+ I + + L M GI
Sbjct: 28 LSFRNPQWPANQIYKENAL-EYFCNQANTFYEMNSCNQQIIMQGIKNRTVEECLRNMQGI 86
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ P V+P+ YY++ G+++QAP + ++ +R+ AL +
Sbjct: 87 QYVLW-YSQPPLFIICKQRRNSPTNVSPISYYYIISGNVHQAPDMYSLIQSRLLGALEPL 145
Query: 145 QKAF 148
+ AF
Sbjct: 146 RNAF 149
>gi|430811952|emb|CCJ30601.1| unnamed protein product [Pneumocystis jirovecii]
Length = 230
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPL--DIS-QLSK 80
D++ I +R W++ Y R +YF S FYDR NN+ L+M++ D+ L K
Sbjct: 3 DLSVIAWRMPEWISAYGGLRT-DNEYFAQSPFYDRHSNNQLLKMQTQFSTLGDLQGHLKK 61
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
M GIE+++S +P +VI KQ R T + Y++ + SIY AP + V ++R+
Sbjct: 62 MRGIEFVISANYDPDAWVIYKQHRTSEHDATILAAYFIANESIYMAPSIHAVIASRM 118
>gi|336274931|ref|XP_003352219.1| hypothetical protein SMAC_02654 [Sordaria macrospora k-hell]
gi|380092299|emb|CCC10075.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 363
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 31/139 (22%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
L N I YF S FYD+T NNE + + ++ +SQ L +M+G+E++++
Sbjct: 28 LHSNSILYYFAQSPFYDKTSNNEVVFQQGLNNQAMSQYLATRELFESRLREMSGLEFIVA 87
Query: 90 E-------VMEPHLFVIRKQKR------------DGP-EKVTPMLTYYVLDGSIYQAPQL 129
+ M ++VI KQ R DGP +++ TY+V+ +IY AP L
Sbjct: 88 QEPAETGPGMGTGVWVINKQTRRKRPPTNPVRPEDGPPDEIIVHSTYFVVGENIYMAPTL 147
Query: 130 CNVFSARIGRALHYIQKAF 148
+V S+RIG I K
Sbjct: 148 ADVISSRIGAIASAITKTL 166
>gi|403414926|emb|CCM01626.1| predicted protein [Fibroporia radiculosa]
Length = 1055
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 35 WLNTY-PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH---PL--DISQLSKMTGIEYML 88
W+ + PL +FDYF S+FYD+ NN+ LRM+++H PL + +L + TG+E+ +
Sbjct: 781 WIQAHGPLTNENVFDYFATSMFYDKQSNNQVLRMQTMHTGMPLENEAEELRRFTGVEFAV 840
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
P +F+I K++R P++ T + P + + S R+ +L+ +Q +
Sbjct: 841 VHAEPPSMFIIHKRERLSPDEGTSSAARNPKMSNSSCCPNVYTLVSNRLLTSLNALQTSL 900
Query: 149 TT 150
+
Sbjct: 901 QS 902
>gi|365985798|ref|XP_003669731.1| hypothetical protein NDAI_0D01740 [Naumovozyma dairenensis CBS 421]
gi|343768500|emb|CCD24488.1| hypothetical protein NDAI_0D01740 [Naumovozyma dairenensis CBS 421]
Length = 309
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 70 IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
+H + ++L K+ GIEY+L++V EP ++IRKQ+R E++ + YY++ ++YQ+P +
Sbjct: 113 LHAMLETELMKLKGIEYVLADVSEPDFWLIRKQRRYSREQIEILQDYYIIGANVYQSPTV 172
Query: 130 CNVFSARI-GRALH 142
N+ +R+ +LH
Sbjct: 173 FNIVQSRLMSTSLH 186
>gi|156847687|ref|XP_001646727.1| hypothetical protein Kpol_1023p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156117407|gb|EDO18869.1| hypothetical protein Kpol_1023p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 311
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 70 IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
+H + +L KM G+EY+LS V EP ++I+KQ R E P+ YY++ ++YQ+P +
Sbjct: 136 MHAMLERELGKMKGVEYVLSYVREPDFWIIKKQNRISSESTQPLQAYYIIGANVYQSPTV 195
Query: 130 CNVFSARIGRALHYIQKAFTT 150
V +R+ +++ T
Sbjct: 196 FKVVQSRLLSTSYHLSSTLKT 216
>gi|440491672|gb|ELQ74293.1| RNA polymerase II transcriptional regulation mediator
[Trachipleistophora hominis]
Length = 172
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 25 MTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS--IHPLDIS-QLSKM 81
M + +Q WL T PL + YF+ S FYDR+ NE L+M++ + LD S +L+++
Sbjct: 1 MNDQTYTNQQWLETNPLTVETVLTYFSFSPFYDRSSLNEILKMQTQFTNFLDFSKKLTEL 60
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G++Y++ + + F+ + K+ E++ YYV G+IY+ ++F R+ L
Sbjct: 61 NGVKYLIEQKGDI-FFIYKIHKQKDTEELLDF--YYVFFGTIYKGATTNSIFRTRVFNFL 117
Query: 142 HYIQKA 147
++ ++
Sbjct: 118 FFLNES 123
>gi|254580519|ref|XP_002496245.1| ZYRO0C13926p [Zygosaccharomyces rouxii]
gi|238939136|emb|CAR27312.1| ZYRO0C13926p [Zygosaccharomyces rouxii]
Length = 266
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 70 IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
IH + +LSKM G+EY+++ + EP ++I+KQ R GP +V + YY++ ++YQ+P +
Sbjct: 103 IHAILERELSKMKGLEYVVAHIREPDFWIIKKQNRLGPYQVQVLQDYYIIGANVYQSPSV 162
Query: 130 CNVFSARI 137
+ +R+
Sbjct: 163 FRIIQSRL 170
>gi|85101700|ref|XP_961198.1| hypothetical protein NCU03809 [Neurospora crassa OR74A]
gi|74624530|sp|Q9HED8.1|MED6_NEUCR RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|11595628|emb|CAC18248.1| related to RNA polymerase II transcriptional regulation mediator
MED6 [Neurospora crassa]
gi|28922739|gb|EAA31962.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 360
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 31/139 (22%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N I YF S FYD+T NNE + + ++ +SQ L +M+G+E++++
Sbjct: 28 IHSNSILYYFAQSPFYDKTSNNEVVFQQGLNNQAMSQYLATRELFESRLKEMSGLEFIVA 87
Query: 90 E-------VMEPHLFVIRKQKR------------DGP-EKVTPMLTYYVLDGSIYQAPQL 129
+ M ++VI KQ R DGP +++ Y+V+ +IY AP L
Sbjct: 88 QEPAETGPGMGTGVWVINKQTRRKRPPTNPARPEDGPPDEIIVHSVYFVVGENIYMAPTL 147
Query: 130 CNVFSARIGRALHYIQKAF 148
+V S+RIG I K
Sbjct: 148 ADVLSSRIGAIATAITKTI 166
>gi|336472951|gb|EGO61111.1| hypothetical protein NEUTE1DRAFT_144386 [Neurospora tetrasperma
FGSC 2508]
gi|350293799|gb|EGZ74884.1| mediator of RNA polymerase II transcription subunit 6 [Neurospora
tetrasperma FGSC 2509]
Length = 360
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 31/139 (22%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N I YF S FYD+T NNE + + ++ +SQ L +M+G+E++++
Sbjct: 28 IHSNSILYYFAQSPFYDKTSNNEVVFQQGLNNQAMSQYLATRELFESRLREMSGLEFIVA 87
Query: 90 E-------VMEPHLFVIRKQKR------------DGP-EKVTPMLTYYVLDGSIYQAPQL 129
+ M ++VI KQ R DGP +++ Y+V+ +IY AP L
Sbjct: 88 QEPAETGPGMGTGVWVINKQTRRKRPPTNPARPEDGPPDEIIVHSVYFVVGENIYMAPTL 147
Query: 130 CNVFSARIGRALHYIQKAF 148
+V S+RIG I K
Sbjct: 148 ADVLSSRIGAIATAITKTI 166
>gi|297743143|emb|CBI36010.3| unnamed protein product [Vitis vinifera]
Length = 1479
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 9 NLEGAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIF 47
N +G PP AP P GT+MTGICF+DQLWLN+YP +F
Sbjct: 385 NFDGNPPVAPTPLGTNMTGICFKDQLWLNSYPNSNEHMF 423
>gi|167522206|ref|XP_001745441.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776399|gb|EDQ90019.1| predicted protein [Monosiga brevicollis MX1]
Length = 229
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 42 DRNMIFDYFT---LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFV 98
+ ++ YF + FY R CNNE+++ + LD +L +M GIEY V+ P L
Sbjct: 38 NSDLALQYFAQPDTNAFYQRDCNNERVKQANFGLLDHQKLREMRGIEYEARAVLPPFLHH 97
Query: 99 IRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEK 157
+ +++R P YY+L+G+ YQAP L ++ S+R+ ALH + AF L++
Sbjct: 98 VVQKRRFKPSLALDTAYYYILNGNAYQAPDLSSLISSRLSSALHSLSAAFKAGQGCLKR 156
>gi|406697336|gb|EKD00599.1| hypothetical protein A1Q2_05087 [Trichosporon asahii var. asahii
CBS 8904]
Length = 325
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM--RSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRK 101
++ DYF S F+D NN LR R +P ++ ++ +G EY+++ + P+LFVI +
Sbjct: 31 DLAMDYFAHSPFFDTQSNNSVLRTQRRVENPTEL--IAFRSGFEYIVAHSLPPNLFVIHR 88
Query: 102 QKR--DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
+ DG + Y++L +YQ+P L + S R+ A H ++ F +
Sbjct: 89 RNVLPDG-GRGPATAAYFILHDKVYQSPSLYDTVSTRLRNATHLLESTFDS 138
>gi|6321849|ref|NP_011925.1| Med6p [Saccharomyces cerevisiae S288c]
gi|731660|sp|P38782.1|MED6_YEAST RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|410563055|pdb|4GWP|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
gi|410563062|pdb|4GWQ|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
gi|487956|gb|AAB68387.1| Med6p: RNA polymerase II transcriptional regulation mediator
[Saccharomyces cerevisiae]
gi|2098619|gb|AAB57643.1| RNA polymerase II transcriptional regulation mediator
[Saccharomyces cerevisiae]
gi|285809964|tpg|DAA06751.1| TPA: Med6p [Saccharomyces cerevisiae S288c]
gi|392298860|gb|EIW09955.1| Med6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 295
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ +IYQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSAKGPE-IIPLQDYYIIGANIYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|323348228|gb|EGA82477.1| Med6p [Saccharomyces cerevisiae Lalvin QA23]
Length = 295
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLXDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|209875533|ref|XP_002139209.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209554815|gb|EEA04860.1| hypothetical protein CMU_039270 [Cryptosporidium muris RN66]
Length = 211
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 90/215 (41%), Gaps = 53/215 (24%)
Query: 23 TDMTG---ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
TD+ G FRD LWL + L + +YF LS F+D N Q +M +QLS
Sbjct: 2 TDILGNPLKSFRDDLWLGRFVLSPTLALEYFFLSPFHDPNSLNMQRKM--------NQLS 53
Query: 80 --KMTGIEYMLSEVMEPHL-------------------FVIRKQKRDGPEKVTPMLTYYV 118
++ GIEY L V E L F+I+K +V P+ YY+
Sbjct: 54 CEEVEGIEYKLIYVNEEGLDRISLPPGSTWIVPNQFGIFIIQKFLIQYQREV-PLQLYYI 112
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKE 178
+ G+IY+AP L ++F R+ A ++ F G + + G +SK K
Sbjct: 113 IAGTIYEAPSLSSIFLHRVAEAFRNLEITFDLIK------GMSEFSLNEGYNWNSKLNKR 166
Query: 179 TIDLK--------------EVKRVDQILASLQRKL 199
+D K ++VD +L S ++ L
Sbjct: 167 NLDSKIDSEPLVTLSCTPNTYQKVDNVLVSNKKAL 201
>gi|207344702|gb|EDZ71759.1| YHR058Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 295
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDI---SQLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|323333229|gb|EGA74627.1| Med6p [Saccharomyces cerevisiae AWRI796]
Length = 295
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|151944002|gb|EDN62295.1| mediator complex subunit [Saccharomyces cerevisiae YJM789]
gi|349578608|dbj|GAA23773.1| K7_Med6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 295
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSAKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|365765171|gb|EHN06683.1| Med6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 295
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDI---SQLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|256270567|gb|EEU05748.1| Med6p [Saccharomyces cerevisiae JAY291]
gi|323304673|gb|EGA58435.1| Med6p [Saccharomyces cerevisiae FostersB]
gi|323354628|gb|EGA86463.1| Med6p [Saccharomyces cerevisiae VL3]
Length = 295
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDI---SQLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|190405841|gb|EDV09108.1| RNA polymerase II mediator complex subunit 6 [Saccharomyces
cerevisiae RM11-1a]
Length = 295
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDI---SQLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 KSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|323308811|gb|EGA62048.1| Med6p [Saccharomyces cerevisiae FostersO]
Length = 295
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDXARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NXGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|345100890|pdb|3RJ1|G Chain G, Architecture Of The Mediator Head Module
gi|345100897|pdb|3RJ1|N Chain N, Architecture Of The Mediator Head Module
gi|345100904|pdb|3RJ1|U Chain U, Architecture Of The Mediator Head Module
Length = 295
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLR-MRSIHPLDI------------------ 75
W+ + L + DYF S F+D+T NN+ ++ R L+
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKXQRQFSQLNDPNAAVNXTQNIXTLPDGK 75
Query: 76 -----------------------------SQLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
+L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPXYXQLEEELXKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ +IYQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSAKGPE-IIPLQDYYIIGANIYQSPTIFKIVQSRLXSTSYHLNSTLESLYDLIE 193
>gi|401885989|gb|EJT50065.1| hypothetical protein A1Q1_00720 [Trichosporon asahii var. asahii
CBS 2479]
Length = 421
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM--RSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRK 101
++ DYF S F+D NN LR R +P ++ ++ +G EY+++ + P+LFVI +
Sbjct: 127 DLAMDYFAHSPFFDTQSNNSVLRTQRRVENPTEL--VAFRSGFEYIVAHSLPPNLFVIHR 184
Query: 102 QKR--DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
+ DG + Y++L +YQ+P L + S R+ A H ++ F
Sbjct: 185 RNVLPDG-GRGPATAAYFILHDKVYQSPSLYDAVSTRLRNATHLLESTF 232
>gi|58258499|ref|XP_566662.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134106621|ref|XP_778321.1| hypothetical protein CNBA3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818255|sp|P0CO75.1|MED6_CRYNB RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|338818256|sp|P0CO74.1|MED6_CRYNJ RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|50261024|gb|EAL23674.1| hypothetical protein CNBA3210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222799|gb|AAW40843.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
Length = 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM-RSI------HPLDISQLSK-MTGIEYMLSEVMEPH 95
++ DYF S F+D NN LR R I H + +L+ M+G EY+++ P
Sbjct: 35 DLAMDYFAYSPFWDAKSNNNVLRTQRRIENPAYGHAEEKVELNAFMSGFEYVVAHSQPPD 94
Query: 96 LFVIRKQKRDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
LFVI +++ + K + +++L IYQ P L +V S R+ A I K +T
Sbjct: 95 LFVIHRREVESSGKRDRVTGAWFILHEKIYQCPTLFDVMSTRLKNATSLISKTLST 150
>gi|325179471|emb|CCA13868.1| mediator of RNA polymerase II transcription subunit putative
[Albugo laibachii Nc14]
Length = 176
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 70 IHPLDISQLSKMTGIEYML----SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQ 125
+ L QL M GIEY + ++ + +F IRKQ+R+G +V M YYVL+G++YQ
Sbjct: 1 MQRLSTDQLKNMRGIEYEVVPNTAKQLPQQIFGIRKQRREGRTQVKLMAIYYVLEGTVYQ 60
Query: 126 APQLCNVFSARIGRALHYIQKAF 148
AP + + S+R+ + KAF
Sbjct: 61 APNVHAMLSSRLRTCSFRVGKAF 83
>gi|400601024|gb|EJP68692.1| MED6 mediator sub complex component [Beauveria bassiana ARSEF 2860]
Length = 326
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 22/119 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F++RT NN + ++++ + + +L M+G+E+++
Sbjct: 26 LHSNTILFYFAESPFFERTSNNAVIMSQAMNNMSMYHFIQTREAFEGRLKTMSGLEFIVG 85
Query: 90 EV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
E M ++VIRKQ R +++T +Y+V++ +IY AP L ++ +ARI
Sbjct: 86 EEPAESGPGMGTGVWVIRKQTRRKRYQEADEITVHASYFVVNENIYMAPTLADILAARI 144
>gi|320591997|gb|EFX04436.1| RNA polymerase 2 transcription mediator complex subunit [Grosmannia
clavigera kw1407]
Length = 349
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 23/131 (17%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
+ N I YF S ++D+T NN + +++H + L M+G+EY++
Sbjct: 23 IHSNSILFYFMRSPYFDKTSNNNTVYNQAMHNASMFPVLETRERFEDFLRGMSGVEYVVH 82
Query: 90 EV---MEPH----LFVIRKQKR----DG-PEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ M P ++VIRKQ R DG P+ +T Y+V+ ++YQAP L +V S+RI
Sbjct: 83 QAPAEMAPGTGTGVWVIRKQLRRKRSDGQPDDLTVYADYFVVGLNVYQAPTLGDVLSSRI 142
Query: 138 GRALHYIQKAF 148
+ KAF
Sbjct: 143 TSIAVSLSKAF 153
>gi|347832269|emb|CCD47966.1| similar to mediator of RNA polymerase II transcription subunit 6
[Botryotinia fuckeliana]
Length = 323
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 27/154 (17%)
Query: 28 ICFRDQLWL-NTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDIS---------- 76
I +RD WL L N + YF S F+D T NN L +++H ++S
Sbjct: 11 IQWRDPNWLAGNSGLHENTVLHYFAQSPFFDLTSNNSVLTSQAMHNQNMSYILATRSAFE 70
Query: 77 -QLSKMTGIEYMLSE---VMEP----HLFVIRKQKR----DGPEKVTPMLTYYVLDGSIY 124
+L M+G+E+++++ M P ++VI KQ R +++ +Y+V+ +IY
Sbjct: 71 GRLKTMSGLEFLIAQEPAEMAPGTGTGVWVISKQTRRKRAQEEDEIIKHASYFVVGENIY 130
Query: 125 QAPQLCNVFSARIGRALHYIQKAFTTAASKLEKI 158
AP + +V +R + I + T A SK+ ++
Sbjct: 131 MAPTVADVLGSR----MLSIFTSLTNAISKVSEL 160
>gi|321251623|ref|XP_003192125.1| hypothetical protein CGB_B3810W [Cryptococcus gattii WM276]
gi|317458593|gb|ADV20338.1| Hypothetical Protein CGB_B3810W [Cryptococcus gattii WM276]
Length = 310
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM-RSI------HPLDISQLSK-MTGIEYMLSEVMEPH 95
++ DYF S F+D NN LR R I H + +L+ M+G EY+++ + P
Sbjct: 35 DLAMDYFAYSPFWDSKSNNNVLRTQRRIENPAYGHAEEKVELNAFMSGFEYVVAHSLPPD 94
Query: 96 LFVIRKQKRDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
LFVI +++ + K + +++L IYQ P L +V S R+ A I K T
Sbjct: 95 LFVIHRREVESSGKRDRITGAWFILHEKIYQCPTLFDVMSTRLKNATSLISKTLGT 150
>gi|342885479|gb|EGU85477.1| hypothetical protein FOXB_03961 [Fusarium oxysporum Fo5176]
Length = 317
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNN-----EQLRMRSIHPLDISQ------LSKMTGIEYMLS 89
L N I YF S F++RT NN + + + S++P+ ++ L+ M+G+E+ +
Sbjct: 26 LHNNTILFYFAESPFFERTSNNAVVYNQAMNVPSMYPVIQTREAFETHLNTMSGLEFRVV 85
Query: 90 EVMEPH---------LFVIRKQKRDGP----EKVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
E EP ++VIRKQ R +++T TY+V+ +IY AP L + SAR
Sbjct: 86 E--EPAETGPGAGTGVWVIRKQTRRKSAYDDDEITVHATYFVVGENIYMAPTLSAILSAR 143
Query: 137 IGRALHYIQKAFTTAAS 153
I + A TTA S
Sbjct: 144 ILTISSQVTNAVTTAES 160
>gi|401839071|gb|EJT42432.1| MED6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 295
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR---------------SIHPLDIS--- 76
W+ + L + DYF S F+D+T NN+ ++M+ S + +++S
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNVSVNMSQNIMNLSDGK 75
Query: 77 ------------------------------QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
+L K+ G EY+LS V EP + I+KQKR
Sbjct: 76 NGNVEDEFAYVDPARKQILFKYPMYRQLEEELMKLGGTEYVLSSVREPDFWTIKKQKRVN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GP K+ P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 ETGAGSSRGP-KIIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLSSTLESLYDLIE 193
>gi|323337282|gb|EGA78535.1| Med6p [Saccharomyces cerevisiae Vin13]
Length = 271
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSSKGPE-IIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>gi|150863964|ref|XP_001382624.2| hypothetical protein PICST_55363 [Scheffersomyces stipitis CBS
6054]
gi|158513694|sp|A3LQ10.2|MED6_PICST RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|149385220|gb|ABN64595.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 263
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH-----PLDIS-------QLSKMTGIEYML 88
L + +YF+LS FYDRT NN+QL M+ P++ + +L +MTG+ +++
Sbjct: 22 LHTGNVLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVI 81
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
+ EP ++IRKQ + P+ + YY++ ++YQAP++
Sbjct: 82 AYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKV 122
>gi|315045171|ref|XP_003171961.1| hypothetical protein MGYG_06505 [Arthroderma gypseum CBS 118893]
gi|311344304|gb|EFR03507.1| hypothetical protein MGYG_06505 [Arthroderma gypseum CBS 118893]
Length = 339
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 31/146 (21%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H + Q L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDSTSNNATLTLQAMHNENFRQFIETREAFEGRLKTMQGLEFVVA 86
Query: 90 E--VME--------------PHLFVIRKQKRDGP----EKVTPMLTYYVLDGSIYQAPQL 129
+ + E +++VIRKQ R E+V + TY+V+ SIY AP L
Sbjct: 87 QDPIQEAAAAVAAGNVPQEPSNIWVIRKQNRRRQPGMREEVQILATYFVVGDSIYIAPSL 146
Query: 130 CNVFSARIGRALHYIQKAFTTAASKL 155
NV R+ + + K A+ +L
Sbjct: 147 MNVVGRRMLSTVTSLTKILPAASKQL 172
>gi|340905059|gb|EGS17427.1| hypothetical protein CTHT_0067530 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 336
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 26/134 (19%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSK-----------MTGIEYMLSEVM 92
N + YF S FYD+T NNE L + +H + Q + M+G+E+++++
Sbjct: 32 NSVLFYFRESPFYDKTSNNEVLYQQGLHNQTMMQFLETRERFERRLREMSGLEFVVAQ-- 89
Query: 93 EP---------HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
EP ++VI KQ KR G E +++ TY+++ ++Y AP L ++ S R+
Sbjct: 90 EPAETAPGTGTGVWVINKQTRRKRQGEEDEISVHGTYFLVGENVYMAPTLADIISMRLAS 149
Query: 140 ALHYIQKAFTTAAS 153
A I + AAS
Sbjct: 150 ASSSISRLLPIAAS 163
>gi|367038511|ref|XP_003649636.1| hypothetical protein THITE_2108345 [Thielavia terrestris NRRL 8126]
gi|346996897|gb|AEO63300.1| hypothetical protein THITE_2108345 [Thielavia terrestris NRRL 8126]
Length = 314
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 26/137 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N + YF S FYD+T NNE + + ++ +++Q L M+G+E++++
Sbjct: 28 IHNNSVLYYFAQSPFYDKTSNNEVVFQQGLNNPNMTQFLATRELFEGRLKTMSGLEFIVA 87
Query: 90 EVMEP---------HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
+ EP ++VI KQ KR G E ++T Y+++ +IY AP L ++ S+R
Sbjct: 88 Q--EPAETGPGAGTGVWVINKQTRRKRQGEEDEITVHAVYFIVGENIYMAPSLWDIMSSR 145
Query: 137 IGRALHYIQKAFTTAAS 153
I + K ++S
Sbjct: 146 IASISTQVSKILPISSS 162
>gi|366986685|ref|XP_003673109.1| hypothetical protein NCAS_0A01580 [Naumovozyma castellii CBS 4309]
gi|342298972|emb|CCC66716.1| hypothetical protein NCAS_0A01580 [Naumovozyma castellii CBS 4309]
Length = 297
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 70 IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGP-EKVTPMLTYYVLDGSIYQAPQ 128
+H + +L K+ GIEY+LS V EP + IRKQ R P K+ + YY++ ++YQ+P
Sbjct: 103 LHFVLEQELKKLKGIEYVLSNVREPDFWQIRKQYRSQPGNKIETLQNYYIIGANVYQSPT 162
Query: 129 LCNVFSARIGRALHYIQKAF 148
+ V +R+ + ++ K
Sbjct: 163 IFKVVQSRLLSSTLHLSKTL 182
>gi|365760404|gb|EHN02128.1| Med6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 295
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 56/178 (31%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR---------------SIHPLDIS--- 76
W+ + L + DYF S F+D+T NN+ ++M+ S + +++S
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNVSVNMSQNIMNLSDGK 75
Query: 77 ------------------------------QLSKMTGIEYMLSEVMEPHLFVIRKQKR-D 105
+L K+ G EY+LS V EP + I+KQKR +
Sbjct: 76 NGNVEDEFAYVDPARKQILFKYPMYMQLEEELMKLGGTEYVLSSVREPDFWTIKKQKRVN 135
Query: 106 GPE-------KVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
G K+ P+ YY++ ++YQ+P + + +R+ +++ + +E
Sbjct: 136 GTGAGSSREPKIIPLQDYYIIGANVYQSPTIFKIVQSRLMSTSYHLSSTLESLYDLIE 193
>gi|322700023|gb|EFY91780.1| MED6 mediator sub complex component, putative [Metarhizium acridum
CQMa 102]
Length = 316
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 33 QLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKM 81
Q+ + L N I YF S F++RT NN + ++++ + + +L M
Sbjct: 18 QILASMGGLHSNTILFYFAESPFFERTSNNAVITSQAMNNIAMYHYIQTREAFEGRLKTM 77
Query: 82 TGIEYMLSEV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLC 130
+G+E+++ E M ++VIRKQ R +++T +++V+ +IY AP L
Sbjct: 78 SGLEFIVGEEPAETGPGMGTGVWVIRKQTRRKRYQEEDEITVHASFFVVGENIYMAPTLA 137
Query: 131 NVFSARIGRALHYIQKAFTTAAS 153
++ ++RI I KA A S
Sbjct: 138 DILASRIMTISSAISKALPAAES 160
>gi|402078772|gb|EJT74037.1| hypothetical protein GGTG_07886 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 329
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 31/145 (21%)
Query: 33 QLWLNTYPLDRNMIFDYFTLSLFYDRTCNN-----EQLRMRS-IHPLDI-----SQLSKM 81
Q +N + N + Y S F+DRT NN + +R +S +H + +L +M
Sbjct: 18 QSVVNFQGIHSNSVLYYLAESPFFDRTSNNAVVFNQAVRNQSMLHIVATREAFEGRLREM 77
Query: 82 TGIEYMLSEVMEP---------HLFVIRKQKR------DG---PEKVTPMLTYYVLDGSI 123
G+EYM+++ EP ++VIRKQ R DG P+++ Y+V+ +I
Sbjct: 78 AGLEYMVAQ--EPAETGPGAGTGVWVIRKQTRRKVKAADGTPLPDELEVHADYFVMGENI 135
Query: 124 YQAPQLCNVFSARIGRALHYIQKAF 148
Y AP L +V S+RI I K F
Sbjct: 136 YMAPSLSDVLSSRIATISSAISKLF 160
>gi|269861426|ref|XP_002650421.1| RNA polymerase II transcriptional regulation mediator
[Enterocytozoon bieneusi H348]
gi|220066133|gb|EED43634.1| RNA polymerase II transcriptional regulation mediator
[Enterocytozoon bieneusi H348]
Length = 172
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 40 PLDRNMIFDYFTLSLFYDRTCNNEQLRMR-SIHPLDISQ-LSKMTGIEYMLSEVMEPH-- 95
PL ++ + YF+ S FYD+ C NE LRM+ +DI Q ++K+ GI Y L E + H
Sbjct: 20 PLTKDTVLIYFSYSPFYDKQCINEILRMQFQTFKIDIKQYINKINGIFYELDEEHQKHNA 79
Query: 96 -LFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
LF+I K++ + K+ + YY++ G IY P +
Sbjct: 80 NLFIIYKKEHNNG-KIYLLKAYYIMFGYIYVCPSI 113
>gi|326476493|gb|EGE00503.1| Mediator of RNA polymerase II transcription subunit 6 [Trichophyton
tonsurans CBS 112818]
gi|326484093|gb|EGE08103.1| RNA polymerase II transcription subunit 6 mediator [Trichophyton
equinum CBS 127.97]
Length = 340
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 31/146 (21%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H + Q L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDSTSNNATLTLQAMHNENFRQFIETREAFEGRLKTMQGLEFVVA 86
Query: 90 E--VME--------------PHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQL 129
+ + E +++VIRKQ R E+V + TY+V+ S+Y AP L
Sbjct: 87 QDPIQEAAAAVAAGNAPQEPSNIWVIRKQNRRRQPGMQEEVQILATYFVVGDSVYMAPSL 146
Query: 130 CNVFSARIGRALHYIQKAFTTAASKL 155
+V R+ + + K A+ +L
Sbjct: 147 MSVVGRRMLSTVTSLTKVLPVASKQL 172
>gi|407928193|gb|EKG21063.1| Mediator complex subunit Med6 [Macrophomina phaseolina MS6]
Length = 364
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 24/134 (17%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQL--------RMRSIHPLDISQLSKMTGIEYMLSEVM 92
L ++ YF S F+DRT NN L + H + ++L +M G+E+M+ V
Sbjct: 30 LSSKVVHLYFMESDFFDRTANNWALFKQHGGEDWLVDRHKFE-AKLREMAGLEFMV--VA 86
Query: 93 EPH---------LFVIRKQ---KRDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARIGR 139
EP +++ RKQ KR G E V +L TYY++ +IYQA L ++ +I
Sbjct: 87 EPERRPDGTDTGIYIFRKQDRKKRPGQEDVITVLGTYYLIGENIYQAASLEDIIGNKILA 146
Query: 140 ALHYIQKAFTTAAS 153
A + K F+ A+S
Sbjct: 147 ATTSLAKFFSVASS 160
>gi|322712909|gb|EFZ04482.1| Mediator of RNA polymerase II transcription subunit 6 [Metarhizium
anisopliae ARSEF 23]
Length = 316
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F++RT NN + ++++ + + +L M+G+E+++
Sbjct: 26 LHSNTILFYFAESPFFERTSNNAVITSQAMNNIAMYHFIQTREAFEGRLKTMSGLEFIVG 85
Query: 90 EV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIG 138
E M ++VIRKQ R +++T +++V+ +IY AP L ++ ++RI
Sbjct: 86 EEPAETGPGMGTGVWVIRKQTRRKRYQEEDEITVHASFFVVGENIYMAPTLADILASRIM 145
Query: 139 RALHYIQKAFTTAAS 153
I KA A S
Sbjct: 146 TISSAISKALPAAES 160
>gi|168037624|ref|XP_001771303.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677392|gb|EDQ63863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 364
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 34 LWLNTYPLDRNMIFDYFTLSLFYDRTCNNE 63
+WL++Y LDRN +FDYF LS FYDRTCN E
Sbjct: 1 MWLSSYRLDRNQVFDYFALSPFYDRTCNKE 30
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 139 RALHYIQKAFTTAASKLEKIGY-VDAEN-------DGGTPLHSKAGKETIDLKEVKRVDQ 190
R L++I AF A++ LEKIG D+E D K + +D+KEV VD
Sbjct: 48 RFLYHISNAFAQASANLEKIGSGTDSETGKAGGDADAADVQLKKPTTKVVDVKEVMHVDS 107
Query: 191 ILASLQR 197
ILA + R
Sbjct: 108 ILAGVMR 114
>gi|401625417|gb|EJS43426.1| med6p [Saccharomyces arboricola H-6]
Length = 295
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 58/171 (33%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM-RSIHPLD-------ISQ--------- 77
W+ + L + DYF S F+D+T NN+ ++M R L+ +SQ
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNANVNMSQNIMNLQDGK 75
Query: 78 -------------------------------LSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
L K+ G EY+LS V EP ++++KQ+R
Sbjct: 76 NGNLEDEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWIVKKQRRIN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
GP K+ P+ YY++ ++YQ+P + + +R+ +++
Sbjct: 136 DAGAGNSRGP-KIIPLQDYYIIGANVYQSPTVFKIVQSRLMSTSYHLNSTL 185
>gi|327295883|ref|XP_003232636.1| RNA polymerase II transcription mediator complex subunit
[Trichophyton rubrum CBS 118892]
gi|326464947|gb|EGD90400.1| RNA polymerase II transcription mediator complex subunit
[Trichophyton rubrum CBS 118892]
Length = 340
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 31/146 (21%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H + Q L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDSTSNNATLTLQAMHNENFRQFIETREAFEGRLKTMQGLEFVVA 86
Query: 90 E--VME--------------PHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQL 129
+ + E +++VIRKQ R E++ + TY+V+ S+Y AP L
Sbjct: 87 QDPIQEAAAAVAAGNAPQEPSNIWVIRKQNRRRQPGMQEEIQILATYFVVGDSVYMAPSL 146
Query: 130 CNVFSARIGRALHYIQKAFTTAASKL 155
+V R+ + + K A+ +L
Sbjct: 147 MSVVGRRMLSTVTSLTKVLPVASKQL 172
>gi|149478980|ref|XP_001516878.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like, partial [Ornithorhynchus anatinus]
Length = 154
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 36/164 (21%)
Query: 112 PMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA-------SKLEKIGYVDAE 164
P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A SK + D E
Sbjct: 2 PLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFRDQE 61
Query: 165 NDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPP-----------------APPPPP 207
+K +E + + +RVD +L L++K PP P P
Sbjct: 62 EQDKAKPKAKRKEEPSSIFQRQRVDALLLDLRQKFPPRYVQQKLGEKPVPVEQTKKEPEP 121
Query: 208 FPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
PE P EE E QQTA P+ P P KR+++
Sbjct: 122 APETLKP---EEKETPKSAQQTAGPKGP---------PEKRLRL 153
>gi|154302905|ref|XP_001551861.1| hypothetical protein BC1G_09196 [Botryotinia fuckeliana B05.10]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 28 ICFRDQLWL-NTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDIS---------- 76
I +RD WL L N + YF S F+D T NN L +++H ++S
Sbjct: 11 IQWRDPNWLAGNSGLHENTVLHYFAQSPFFDLTSNNSVLTSQAMHNQNMSYILATRSAFE 70
Query: 77 -QLSKMTGIEYMLSE---VMEP----HLFVIRKQKR----DGPEKVTPMLTYYVLDGSIY 124
+L M+G+E+++++ M P ++VI KQ R +++ +Y+V+ +IY
Sbjct: 71 GRLKTMSGLEFLIAQEPAEMAPGTGTGVWVISKQTRRKRAQEEDEIIKHASYFVVGENIY 130
Query: 125 QAPQLCNVFSARI 137
AP + +V +R+
Sbjct: 131 MAPTVADVLGSRM 143
>gi|378730562|gb|EHY57021.1| hypothetical protein HMPREF1120_05075 [Exophiala dermatitidis
NIH/UT8656]
Length = 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 24 DMTGICFRDQLWL--NTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSI---HPLDI--- 75
D+T D W+ N L N + YF S F+D+ N+ L + + DI
Sbjct: 7 DLTDKAHFDPTWIAWNGGYLHSNNVLFYFATSPFFDQVSGNQSLFTQWAGTPNQNDILGT 66
Query: 76 -----SQLSKMTGIEYML------SEVM--------EPHLFVIRKQKRDGPE--KVTPML 114
+ L GI+Y++ +VM +++VIRKQ R+ + VT +
Sbjct: 67 RAKFEANLRHQRGIQYVVQHDPLEEKVMVDGPNGRENSNVWVIRKQNRENEDDRSVTVLG 126
Query: 115 TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
YY+++ IYQAP + NV + R+ + + K F+T A
Sbjct: 127 YYYIVNDVIYQAPSVANVLNYRMLNTVLSLDKVFSTPA 164
>gi|46123445|ref|XP_386276.1| hypothetical protein FG06100.1 [Gibberella zeae PH-1]
Length = 317
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNN-----EQLRMRSIHPLDISQ------LSKMTGIEYMLS 89
L N I YF S F++RT NN + + + S++P+ ++ L+ M+G+E+ +
Sbjct: 26 LHNNTILFYFAESPFFERTSNNAVVYNQAMNVPSMYPVIQTREAFETHLNTMSGLEFRVV 85
Query: 90 EVMEPH---------LFVIRKQKRDGP----EKVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
E EP ++VIRKQ R +++T +Y+V+ +IY AP L + +AR
Sbjct: 86 E--EPAETGPGAGTGVWVIRKQTRRKSAYDDDEITVHASYFVVGENIYMAPTLSGILAAR 143
Query: 137 IGRALHYIQKAFTTAASKLEKIG 159
I I A TAA + K G
Sbjct: 144 IMTISLSITNAV-TAAESVRKWG 165
>gi|408396455|gb|EKJ75613.1| hypothetical protein FPSE_04256 [Fusarium pseudograminearum CS3096]
Length = 317
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 27/143 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNN-----EQLRMRSIHPLDISQ------LSKMTGIEYMLS 89
L N I YF S F++RT NN + + + S++P+ ++ L+ M+G+E+ +
Sbjct: 26 LHNNTILFYFAESPFFERTSNNAVVYNQAMNVPSMYPVIQTREAFETHLNTMSGLEFRVV 85
Query: 90 EVMEPH---------LFVIRKQKRDGP----EKVTPMLTYYVLDGSIYQAPQLCNVFSAR 136
E EP ++VIRKQ R +++T +Y+V+ +IY AP L + +AR
Sbjct: 86 E--EPAETGPGAGTGVWVIRKQTRRKSAYDDDEITVHASYFVVGENIYMAPTLSGILAAR 143
Query: 137 IGRALHYIQKAFTTAASKLEKIG 159
I I A TAA + K G
Sbjct: 144 IMTISLSITNAV-TAAESVRKWG 165
>gi|402583569|gb|EJW77513.1| MED6 mediator sub complex component family protein [Wuchereria
bancrofti]
Length = 237
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 81 MTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRA 140
M GI+Y + P L+VI KQ+R+ P VTP+ YY+++G++YQ P + +++
Sbjct: 1 MQGIQYTVVGTFPP-LYVIMKQRRNSPTNVTPLAYYYIVNGTVYQCPDIYTYIQSKLISI 59
Query: 141 LHYIQKAFTTAAS----KLEKIGYVDAENDGGTPLHSKAGKET-------IDLKEVKRVD 189
+ +++A A + + K GY D + KA +E + R D
Sbjct: 60 VDPLRQALEQARNFNRFNIAK-GYYWEFKDSSSETVKKATEEEEKPQLARSTFYQRTRTD 118
Query: 190 QILASLQRKLPP 201
QIL L K PP
Sbjct: 119 QILRELFAKFPP 130
>gi|345563769|gb|EGX46754.1| hypothetical protein AOL_s00097g502 [Arthrobotrys oligospora ATCC
24927]
Length = 329
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 13 APPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS--- 69
A PA PP + + + Q W L+ N I YF S F+DR+ NN L M++
Sbjct: 2 AQPAEEPPLDEVLWRMPWFIQQWGQ---LNSNNILLYFFNSPFFDRSSNNSSLFMQTQTN 58
Query: 70 ------IHPLDI--SQLSKMTGIEYMLS-EVMEPHLFVIRKQKRDGPEKVTPMLTYYVLD 120
+H S+L M G+E++++ E ++VI+KQ R P + + Y+V+
Sbjct: 59 PSLNHLVHNRAAFESRLKSMIGVEFVVAAEDPANAMWVIKKQMRRSPTETQLLDVYFVVG 118
Query: 121 GSIYQAPQLCNVFSARIGRALHYIQKA 147
+++ AP + V +AR+ I KA
Sbjct: 119 ENVFMAPTMEKVMTARLLTVTSDILKA 145
>gi|76154265|gb|AAX25754.2| SJCHGC07209 protein [Schistosoma japonicum]
Length = 216
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 93 EPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
EP LF+IRKQ+R P +VTP+ YYV++G++ QAP L + ++R+ + ++K T
Sbjct: 3 EPILFIIRKQQRLSPTQVTPLAYYYVINGTVLQAPDLFTLLNSRLLTTIVGLKKVIQT 60
>gi|358392698|gb|EHK42102.1| hypothetical protein TRIATDRAFT_16456, partial [Trichoderma
atroviride IMI 206040]
Length = 314
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 22/119 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F++RT NN + ++++ + + ++L M+G+E+++
Sbjct: 26 LHSNTILFYFAESPFFERTSNNAVIMAQAMNNMAMYHYIQTREAFETRLKTMSGLEFIVG 85
Query: 90 EV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
E M ++VIRKQ R +++T +++V+ +IY AP L ++ ++RI
Sbjct: 86 EEPAETGPGMGTGVWVIRKQTRRKRYQDDDEITVHASFFVVGENIYMAPTLADILASRI 144
>gi|358382382|gb|EHK20054.1| hypothetical protein TRIVIDRAFT_68630 [Trichoderma virens Gv29-8]
Length = 318
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 22/119 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F++RT NN + ++++ + + ++L M+G+E+++
Sbjct: 26 LHSNTILFYFAESPFFERTSNNAVIMAQAMNNMAMYHYIQTREAFETRLKTMSGLEFIVG 85
Query: 90 EV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
E M ++VIRKQ R +++T +++V+ +IY AP L ++ ++RI
Sbjct: 86 EEPAETGPGMGTGVWVIRKQTRRKRYQDDDEITVHASFFVVGENIYMAPTLADILASRI 144
>gi|340519169|gb|EGR49408.1| predicted protein [Trichoderma reesei QM6a]
Length = 328
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 22/119 (18%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F++RT NN + ++++ + + ++L M+G+E+++
Sbjct: 26 LHSNTILFYFAESPFFERTSNNAVIMAQAMNNMAMYHYIQTREAFETRLKTMSGLEFIVG 85
Query: 90 EV-------MEPHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
E M ++VIRKQ R +++T +++V+ +IY AP L ++ ++RI
Sbjct: 86 EEPAETGPGMGTGVWVIRKQTRRKRYQDDDEITVHASFFVVGENIYMAPTLADILASRI 144
>gi|226294789|gb|EEH50209.1| mediator of RNA polymerase II transcription subunit 6
[Paracoccidioides brasiliensis Pb18]
Length = 400
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 37/149 (24%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYM-- 87
L N I YF S F+D T NN L +++ + + +L M G+E+M
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQASYNENFRHFIETREAFEGRLKTMQGVEFMVV 86
Query: 88 ---LSEV-----------------MEP-HLFVIRKQ---KRDGPEKVTPMLTYYVLDGSI 123
L EV EP +++VIRKQ KR +++ + TY+V+ S+
Sbjct: 87 RDPLQEVAAAAAATADEKGPQKLPQEPSNVWVIRKQVRKKRASDDEIQVLATYFVVGDSV 146
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAA 152
Y AP + V +R+ + + KA + A+
Sbjct: 147 YMAPSVLKVIGSRMLSTVTSLTKALSVAS 175
>gi|440638830|gb|ELR08749.1| hypothetical protein GMDG_03428 [Geomyces destructans 20631-21]
Length = 328
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 28 ICFRDQLWLN-TYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI----------- 75
I +R W + N + YF S F+D T NN L ++++ ++
Sbjct: 13 IQWRSPAWAQQMMGIHSNSVLPYFAKSPFFDPTSNNAVLENQAMYNQNMVNIVATREAFE 72
Query: 76 SQLSKMTGIEYMLSEVMEPH---------LFVIRKQ---KRDGPEK-VTPMLTYYVLDGS 122
+L M+G+EY++++ EP ++VIRKQ KR G E +T TY+V+ +
Sbjct: 73 GRLKTMSGLEYVVAQ--EPAETAPGTGTGVWVIRKQTRRKRQGQEDDITIHSTYFVMGEN 130
Query: 123 IYQAPQLCNVFSARIGRALHYIQKAFTTAASKL 155
IY AP +V +R+ + K F +AA+ L
Sbjct: 131 IYMAPAFLDVVRSRMLSIFTSLDK-FVSAANAL 162
>gi|405117729|gb|AFR92504.1| hypothetical protein CNAG_00369 [Cryptococcus neoformans var.
grubii H99]
Length = 363
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM-RSI------HPLDISQLSK-MTGIEYMLSEVMEPH 95
++ DYF S F+D NN LR R I H + +L+ M+G EY+++
Sbjct: 35 DLAMDYFAYSPFWDAKSNNNVLRTQRRIENPAYGHAEEKVELNAFMSGFEYVVAHSQPSD 94
Query: 96 LFVIRKQ------KRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
LFVI ++ KRD +VT +++L IYQ P L +V S R+ A I K
Sbjct: 95 LFVIHRREVEPSGKRD---RVTG--AWFILHEKIYQCPTLFDVMSTRLKNATSLISKTL 148
>gi|442570223|sp|Q1E3Z7.2|MED6_COCIM RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|392861849|gb|EAS37561.2| RNA polymerase II transcription mediator complex subunit
[Coccidioides immitis RS]
Length = 353
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 37/152 (24%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDPTSNNASLALQAMHNENLRPFIETRGAFEGRLKTMQGLEFIVA 86
Query: 90 E--VME------------------PHLFVIRKQKR------DGPEKVTPMLTYYVLDGSI 123
++E +++VIRKQ R G + V + TY+V+ S+
Sbjct: 87 HDPLLEAAAANAAAVARGEQPKEASNVWVIRKQMRRRSAAMGGQDDVQVLATYFVVGDSV 146
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAASKL 155
+ AP + +V R+ + + K +TA++ L
Sbjct: 147 FMAPSVWSVVGRRMLSTVTSLTKVLSTASALL 178
>gi|303322198|ref|XP_003071092.1| hypothetical protein CPC735_036530 [Coccidioides posadasii C735
delta SOWgp]
gi|240110791|gb|EER28947.1| hypothetical protein CPC735_036530 [Coccidioides posadasii C735
delta SOWgp]
gi|320034942|gb|EFW16884.1| RNA polymerase II transcription mediator complex subunit
[Coccidioides posadasii str. Silveira]
Length = 353
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 37/152 (24%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDPTSNNASLALQAMHNENLRPFIETRGAFEGRLKTMQGLEFIVA 86
Query: 90 E--VME------------------PHLFVIRKQKR------DGPEKVTPMLTYYVLDGSI 123
++E +++VIRKQ R G + V + TY+V+ S+
Sbjct: 87 HDPLLEAAAANAAAVARGEQPKEASNVWVIRKQMRRRSAAMGGQDDVQVLATYFVVGDSV 146
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAASKL 155
+ AP + +V R+ + + K +TA++ L
Sbjct: 147 FMAPSVWSVVGRRMLSTVTSLTKVLSTASALL 178
>gi|255945749|ref|XP_002563642.1| Pc20g11560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588377|emb|CAP86485.1| Pc20g11560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 338
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ ++L M G+E+M+S
Sbjct: 26 LHSNNILFYFAESPFFDSTSNNASLAIQANYNDAFRHFVETREAFEARLKTMQGLEFMVS 85
Query: 90 E-------------VMEP-HLFVIRKQ---KRDG-PEKVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G ++VT + TY+V+ +Y AP + +
Sbjct: 86 YDPLQAAAQTDNRFAHEPSNIWVIRKQNRRKRSGMDDEVTVISTYFVVGDCVYMAPSVAS 145
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + + +AA+
Sbjct: 146 VVGNRILSAVTSLTQLMKSAAT 167
>gi|154272511|ref|XP_001537108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409095|gb|EDN04551.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 398
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 44/154 (28%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D+T NN L +++ H L+ +L M G+E+M+
Sbjct: 27 LHSNNILFYFAESPFFDKTSNNASLAVQASYNENFRHFLETREAFEGRLKGMQGLEFMV- 85
Query: 90 EVMEP--------------------HLFVIRKQKR-----------DGPEKVTPMLTYYV 118
V +P +++VIRKQ R G +++ + TY+V
Sbjct: 86 -VHDPLQEAAAAGGIQQQRVQQEPSNVWVIRKQMRKKRAGLGSGPAGGDDEIQVLATYFV 144
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
+ S+Y AP + + +RI + + KA + A+
Sbjct: 145 VGDSVYMAPSVLKIVGSRILSTVTSLTKALSAAS 178
>gi|295668889|ref|XP_002794993.1| mediator of RNA polymerase II transcription subunit 6
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285686|gb|EEH41252.1| mediator of RNA polymerase II transcription subunit 6
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 400
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 41/153 (26%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYM-- 87
L N I YF S F+D T NN L +++ + + +L M G+E+M
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQASYNENFRHFIETREAFEGRLKTMQGVEFMVV 86
Query: 88 ---LSEV---------------------MEP-HLFVIRKQ---KRDGPEKVTPMLTYYVL 119
L EV EP +++VIRKQ KR +++ + TY+V+
Sbjct: 87 RDPLQEVAAAAAIAAAIAADEKVPQKLPQEPSNVWVIRKQVRKKRASDDEIQVLATYFVV 146
Query: 120 DGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
S+Y AP + V +R+ + + KA + A+
Sbjct: 147 GDSVYMAPSVLKVIGSRMLSTVTSLTKALSVAS 179
>gi|353227424|emb|CCA77932.1| hypothetical protein PIIN_00646 [Piriformospora indica DSM 11827]
Length = 339
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 76 SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSA 135
++L + TG+EY L +P LFVI+++ R P +V P Y++L+ +Y P L + S
Sbjct: 8 NELKQFTGMEYALVHA-QPPLFVIQQRHRLSPTEVRPTAVYFILNNVLYSGPDLYTLLST 66
Query: 136 RIGRALHYIQKAF 148
++ AL+ IQ +
Sbjct: 67 KLTNALNMIQGSL 79
>gi|212546399|ref|XP_002153353.1| RNA polymerase II transcription mediator complex subunit (Med6),
putative [Talaromyces marneffei ATCC 18224]
gi|210064873|gb|EEA18968.1| RNA polymerase II transcription mediator complex subunit (Med6),
putative [Talaromyces marneffei ATCC 18224]
Length = 309
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 29/141 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYML- 88
L N I YF S F+D T NN L +++ H L+ +L M G+E+M+
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLTIQATYNEAFRHFLETREAFEGRLKTMQGLEFMVA 86
Query: 89 ---------SEVMEPH----LFVIRKQ---KRDGPEK-VTPMLTYYVLDGSIYQAPQLCN 131
S+ H +++IRKQ KR G E V + TYY++ S+Y AP + +
Sbjct: 87 YDPLQAAAQSDTQFAHEPSNIWIIRKQMRQKRPGMEDDVVVLSTYYIVGDSVYMAPAVSS 146
Query: 132 VFSARIGRALHYIQKAFTTAA 152
V RI A+ + K A+
Sbjct: 147 VIGNRILSAVTSLTKLMNVAS 167
>gi|296810486|ref|XP_002845581.1| mediator of RNA polymerase II transcription subunit 6 [Arthroderma
otae CBS 113480]
gi|238842969|gb|EEQ32631.1| mediator of RNA polymerase II transcription subunit 6 [Arthroderma
otae CBS 113480]
Length = 341
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 31/146 (21%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N + YF S F+D T NN L ++++H + Q L M G+E++++
Sbjct: 27 IHSNNVLFYFAESPFFDSTSNNATLTLQAMHNENFRQFIETREAFEGRLKTMQGLEFVVA 86
Query: 90 EV---------------MEP-HLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQL 129
EP +++VIRKQ R E V + TY+V+ S+Y AP L
Sbjct: 87 RDPIEEAAAAVAAGNAPQEPSNIWVIRKQNRRRLPGMQEDVQILATYFVVGDSVYMAPSL 146
Query: 130 CNVFSARIGRALHYIQKAFTTAASKL 155
+V R+ + + K A+ +L
Sbjct: 147 MSVVGRRMLSTVTSLTKILPVASKEL 172
>gi|425773985|gb|EKV12310.1| RNA polymerase II transcription mediator complex subunit (Med6),
putative [Penicillium digitatum PHI26]
gi|425782332|gb|EKV20248.1| RNA polymerase II transcription mediator complex subunit (Med6),
putative [Penicillium digitatum Pd1]
Length = 338
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ ++L M G+E+++S
Sbjct: 26 LHSNNILFYFAESPFFDSTSNNASLAIQANYNDAFRHFVETREAFEARLKTMQGLEFIVS 85
Query: 90 E-------------VMEP-HLFVIRKQ---KRDG-PEKVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G ++VT + TY+++ IY AP + +
Sbjct: 86 YDPLQAAAQTDNRFAHEPSNIWVIRKQNRRKRSGMDDEVTVISTYFIVGDCIYMAPSVAS 145
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + + +AA+
Sbjct: 146 VVGNRILSAVTSLTQLMKSAAT 167
>gi|240276858|gb|EER40369.1| RNA polymerase II transcription mediator complex subunit
[Ajellomyces capsulatus H143]
gi|325095102|gb|EGC48412.1| RNA polymerase II transcription mediator complex subunit
[Ajellomyces capsulatus H88]
Length = 398
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 44/154 (28%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D+T NN L +++ H L+ +L M G+E+M+
Sbjct: 27 LHSNNILFYFAESPFFDKTSNNASLAVQASYNENFRHFLETREAFEGRLKGMQGLEFMV- 85
Query: 90 EVMEP--------------------HLFVIRKQKR-------DGP----EKVTPMLTYYV 118
V +P +++VIRKQ R GP +++ + TY+V
Sbjct: 86 -VHDPLQEAAAAGGIQQQRVQQEPSNVWVIRKQMRKKRAGLGSGPAGSDDEIQVLATYFV 144
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
+ S+Y AP + + +RI + + KA + A+
Sbjct: 145 VGDSVYMAPSVLKIVGSRILSTVTSLTKALSAAS 178
>gi|225554769|gb|EEH03064.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 395
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 44/154 (28%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D+T NN L +++ H L+ +L M G+E+M+
Sbjct: 27 LHSNNILFYFAESPFFDKTSNNASLAVQASYNENFRHFLETREAFEGRLKGMQGLEFMV- 85
Query: 90 EVMEP--------------------HLFVIRKQKR-------DGP----EKVTPMLTYYV 118
V +P +++VIRKQ R GP +++ + TY+V
Sbjct: 86 -VHDPLQEAAAAGGIQQQRVQQEPSNVWVIRKQMRKKRAGLGSGPAGSDDEIQVLATYFV 144
Query: 119 LDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
+ S+Y AP + + +RI + + KA + A+
Sbjct: 145 VGDSVYMAPSVLKIVGSRILSTVTSLTKALSAAS 178
>gi|327354797|gb|EGE83654.1| RNA polymerase II transcription mediator complex subunit Med6
[Ajellomyces dermatitidis ATCC 18188]
Length = 400
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 48/171 (28%)
Query: 28 ICFRDQLWLNTYP--LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI---------- 75
I +R L + T L N I YF S F+D+T NN L +++ + +
Sbjct: 12 ITWRSPLHVQTMGGFLHSNNILFYFAESPFFDQTSNNASLAIQANYNENFRPFIETREAF 71
Query: 76 -SQLSKMTGIEYMLSEVMEP----------------------HLFVIRKQKR-------- 104
+L M G+E+M+ V +P +++VIRKQ R
Sbjct: 72 EGRLKTMQGLEFMV--VHDPLQEAAAAAAVGGKQQRKQQELSNIWVIRKQMRKKRTGVGS 129
Query: 105 ---DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
G +++ + TY+V+ S++ AP + V +R+ A+ + +A + A+
Sbjct: 130 GAAGGDDEIQVLATYFVVGDSVFMAPSVLRVVGSRMLSAVTSLTRALSVAS 180
>gi|261191015|ref|XP_002621916.1| RNA polymerase II transcription mediator complex subunit Med6
[Ajellomyces dermatitidis SLH14081]
gi|239590960|gb|EEQ73541.1| RNA polymerase II transcription mediator complex subunit Med6
[Ajellomyces dermatitidis SLH14081]
Length = 400
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 48/171 (28%)
Query: 28 ICFRDQLWLNTYP--LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI---------- 75
I +R L + T L N I YF S F+D+T NN L +++ + +
Sbjct: 12 ITWRSPLHVQTMGGFLHSNNILFYFAESPFFDQTSNNASLAIQANYNENFRPFIETREAF 71
Query: 76 -SQLSKMTGIEYMLSEVMEP----------------------HLFVIRKQKR-------- 104
+L M G+E+M+ V +P +++VIRKQ R
Sbjct: 72 EGRLKTMQGLEFMV--VHDPLQEAAAAAAVGGKQQRKQQELSNIWVIRKQMRKKRTGVGS 129
Query: 105 ---DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
G +++ + TY+V+ S++ AP + V +R+ A+ + +A + A+
Sbjct: 130 GAAGGDDEIQVLATYFVVGDSVFMAPSVLRVVGSRMLSAVTSLTRALSVAS 180
>gi|158563875|sp|Q5AYT1.2|MED6_EMENI RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
Length = 325
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ ++L M G+E+M++
Sbjct: 28 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEARLKTMQGLEFMVA 87
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
V EP +++VIRKQ KR G E +V + T++V+ IY AP +
Sbjct: 88 YDPLQAAAGANAQFVHEPSNVWVIRKQTRRKRSGFEDEVVVLATFFVVGDCIYMAPSAAS 147
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 148 VIGNRILSAVTSLTSLLKTAST 169
>gi|169776971|ref|XP_001822951.1| mediator of RNA polymerase II transcription subunit 6 [Aspergillus
oryzae RIB40]
gi|238494050|ref|XP_002378261.1| RNA polymerase II transcription mediator complex subunit Med6
[Aspergillus flavus NRRL3357]
gi|121800699|sp|Q2U9E7.1|MED6_ASPOR RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|83771688|dbj|BAE61818.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694911|gb|EED51254.1| RNA polymerase II transcription mediator complex subunit Med6
[Aspergillus flavus NRRL3357]
gi|391872422|gb|EIT81549.1| mediator of RNA polymerase II transcription subunit 6 [Aspergillus
oryzae 3.042]
Length = 328
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYML- 88
L N I YF S F+D T NN L +++ + + +L M G+E+++
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNETLRHFVETREAFEGRLKTMQGLEFVVA 86
Query: 89 ------------SEVMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
S EP +++VIRKQ KR G E +V + TY+V+ IY AP + +
Sbjct: 87 YDPLQAAAQTETSFAHEPSNIWVIRKQTRRKRAGLEDEVVVLSTYFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V R+ A+ + TA+S
Sbjct: 147 VVGNRLLSAVTSLTSLLKTASS 168
>gi|119196683|ref|XP_001248945.1| hypothetical protein CIMG_02716 [Coccidioides immitis RS]
Length = 358
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 38/153 (24%)
Query: 40 PLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYML 88
PL ++F YF S F+D T NN L ++++H ++ +L M G+E+++
Sbjct: 32 PLKSWLLF-YFAESPFFDPTSNNASLALQAMHNENLRPFIETRGAFEGRLKTMQGLEFIV 90
Query: 89 SE--VME------------------PHLFVIRKQKR------DGPEKVTPMLTYYVLDGS 122
+ ++E +++VIRKQ R G + V + TY+V+ S
Sbjct: 91 AHDPLLEAAAANAAAVARGEQPKEASNVWVIRKQMRRRSAAMGGQDDVQVLATYFVVGDS 150
Query: 123 IYQAPQLCNVFSARIGRALHYIQKAFTTAASKL 155
++ AP + +V R+ + + K +TA++ L
Sbjct: 151 VFMAPSVWSVVGRRMLSTVTSLTKVLSTASALL 183
>gi|449300512|gb|EMC96524.1| hypothetical protein BAUCODRAFT_33894 [Baudoinia compniacensis UAMH
10762]
Length = 384
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 43/167 (25%)
Query: 28 ICFRD---QLWLNT--------YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI- 75
+ RD Q W+ YP++ MI YF+ ++D + N ++S D
Sbjct: 12 VARRDEVIQWWMEADNNVPHPRYPMEERMIHRYFSTLQYFDHSSKNGLFFLQSEVNPDFY 71
Query: 76 ----------SQLSKMTGIEYMLSEV----------MEPHLFVIRKQKR-----DGPEKV 110
+L + G+EY+++ V ++VIRKQ+R +G +
Sbjct: 72 ALVHDRKGFEDRLRERPGLEYVIAGVPQQAVGAPAGENSAVWVIRKQERLDERIEGIDPS 131
Query: 111 TPM------LTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTA 151
TP TYY+++ + YQAP + +V R+ A+ ++KAF A
Sbjct: 132 TPYPKTETRGTYYIVNENAYQAPSVADVVGNRMLSAMSSLEKAFGKA 178
>gi|452985564|gb|EME85320.1| hypothetical protein MYCFIDRAFT_150414 [Pseudocercospora fijiensis
CIRAD86]
Length = 386
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 43/154 (27%)
Query: 36 LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSK-----------MTGI 84
+N P+D NMI Y + S F+D + N ++ + ++ +LS G+
Sbjct: 26 MNGQPMDENMIHRYMSESPFFDWSSKNGMYLSQAQNDWNMYELSNNRKGFEDLVRSRNGL 85
Query: 85 EYMLSEVMEPH---------------LFVIRKQKR---------------DGPEKVTPML 114
E+M+ V EP ++V+RKQ R +G ++T +
Sbjct: 86 EFMI--VAEPQPVADKELAAQGVKTGIYVVRKQDRQRIQDNAPRPAGVIIEGQWEITILA 143
Query: 115 TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 148
TYY++ ++YQAP + ++ R+ A + K
Sbjct: 144 TYYIVGINVYQAPNVFDIIGNRLLAAASSLNKVI 177
>gi|398390928|ref|XP_003848924.1| hypothetical protein MYCGRDRAFT_76477 [Zymoseptoria tritici IPO323]
gi|339468800|gb|EGP83900.1| hypothetical protein MYCGRDRAFT_76477 [Zymoseptoria tritici IPO323]
Length = 356
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 86/233 (36%), Gaps = 72/233 (30%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNN---------------EQLRMRSIHPLDISQLSKMTGIE 85
+D N I Y SLF+D + NN L+ + L L G E
Sbjct: 1 MDDNFIHRYMAESLFFDHSTNNGFFIAQAQTDRYMWETSLKRKEFEAL----LRNKAGTE 56
Query: 86 YMLSEVMEPH---------------LFVIRKQKR-----------------DGPEKVTPM 113
YM+ V EP ++V+RKQ+R +G ++T +
Sbjct: 57 YMI--VGEPQPVADKTLAAQGVKTGIYVVRKQERQSVKDKSQRSYAPGVSHEGNWELTTL 114
Query: 114 LTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS--------------KLEKIG 159
TY+++ IYQAP + +V R+ A + KA A + K
Sbjct: 115 ATYFIVGEQIYQAPSVFDVVGNRLLSAASSLNKAVEIANDLPRYTPATGYHYLPQTVKRA 174
Query: 160 YVDAENDGGTPLHSKAGKET--IDLKEVKRVDQILASLQRKLPPAPPPPPFPE 210
A + G+P+ S+ G +D + V R ILA LP A P F E
Sbjct: 175 ANTAGSVAGSPVGSREGSVVPGVDSQSV-RSGSILADTS--LPAAAPTTSFQE 224
>gi|302909549|ref|XP_003050097.1| hypothetical protein NECHADRAFT_84866 [Nectria haematococca mpVI
77-13-4]
gi|256731034|gb|EEU44384.1| hypothetical protein NECHADRAFT_84866 [Nectria haematococca mpVI
77-13-4]
Length = 316
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 26/125 (20%)
Query: 37 NTYPLDRNMIFDYFTLSLFYDRTCNN----EQLRMRSIHPLDI-------SQLSKMTGIE 85
N L N I YF S F++RT NN Q S DI +L+ M G+E
Sbjct: 22 NMGGLHSNSILFYFAESPFFERTSNNAVVYNQAMNNSAMFSDIQTREAFEGRLNTMAGLE 81
Query: 86 YMLSEVMEPH---------LFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
+ ++E EP ++VIRKQ R + +++ +Y+V+ +IY AP L ++
Sbjct: 82 FRVAE--EPAETGPGAGTGVWVIRKQTRRKHYEARDEIIVHASYFVVGENIYMAPTLNDI 139
Query: 133 FSARI 137
+ARI
Sbjct: 140 LAARI 144
>gi|258569465|ref|XP_002543536.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903806|gb|EEP78207.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 391
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 35/147 (23%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
+ N I YF S F+D T NN L ++++H + +L M G+E++++
Sbjct: 54 IHSNNILFYFAESPFFDPTSNNASLALQAMHNENFRPFIETREAFEGRLKTMQGLEFIVA 113
Query: 90 E--VME------------------PHLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQ 125
++E +++VIRKQ R G + V + TY+V+ S++
Sbjct: 114 RDPLLEVAAANTAAVARGEQPKEASNVWVIRKQMRRRGIGGQDDVQILATYFVVGDSVFM 173
Query: 126 APQLCNVFSARIGRALHYIQKAFTTAA 152
AP + +V R+ + + K +TA+
Sbjct: 174 APSVWSVVGRRMLSTVTSLTKVLSTAS 200
>gi|171694111|ref|XP_001911980.1| hypothetical protein [Podospora anserina S mat+]
gi|170947004|emb|CAP73808.1| unnamed protein product [Podospora anserina S mat+]
Length = 337
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N + YF S FYD+T NNE L + ++ ++ Q L M+G+E++++
Sbjct: 26 IHNNSVLYYFATSPFYDKTSNNEVLFQQGLNNPNMMQFLATREAFEGRLRTMSGLEFIVA 85
Query: 90 EVMEP---------HLFVIRKQ----KRDGPE-KVTPMLTYYVLDGSIYQAPQLCNVFSA 135
+ EP ++VI KQ +R+G E ++ YY++ I+ AP ++ SA
Sbjct: 86 Q--EPAETGPGAGTGVWVINKQTRRKRREGEEDEIAVHSVYYIVGEHIHMAPSFADIMSA 143
Query: 136 RIGRALHYIQ 145
R+ L + +
Sbjct: 144 RLVSLLIFFR 153
>gi|119467764|ref|XP_001257688.1| MED6 mediator sub complex component, putative [Neosartorya fischeri
NRRL 181]
gi|119405840|gb|EAW15791.1| MED6 mediator sub complex component, putative [Neosartorya fischeri
NRRL 181]
Length = 324
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEGRLRTMQGLEFVVA 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G E +V + T++V+ IY AP + +
Sbjct: 87 YDPLQAAAQTDTQFAHEPSNVWVIRKQMRRKRAGQEDEVVVLATFFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TAA+
Sbjct: 147 VVGNRILSAVTSLTSLLKTAAT 168
>gi|67540758|ref|XP_664153.1| hypothetical protein AN6549.2 [Aspergillus nidulans FGSC A4]
gi|40738699|gb|EAA57889.1| hypothetical protein AN6549.2 [Aspergillus nidulans FGSC A4]
gi|259480122|tpe|CBF70966.1| TPA: RNA polymerase II transcription mediator complex subunit
(Med6), putative (AFU_orthologue; AFUA_6G04810)
[Aspergillus nidulans FGSC A4]
Length = 346
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ ++L M G+E+M++
Sbjct: 28 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEARLKTMQGLEFMVA 87
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
V EP +++VIRKQ KR G E +V + T++V+ IY AP +
Sbjct: 88 YDPLQAAAGANAQFVHEPSNVWVIRKQTRRKRSGFEDEVVVLATFFVVGDCIYMAPSAAS 147
Query: 132 VFSARI 137
V RI
Sbjct: 148 VIGNRI 153
>gi|346974587|gb|EGY18039.1| mediator of RNA polymerase II transcription subunit 6 [Verticillium
dahliae VdLs.17]
Length = 328
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNE------------QLRMRSIHPLDISQLSKM-TGIEYM 87
+ N + YF S F+D++ NN Q +M + + + LS+M G+E+
Sbjct: 26 IHSNSVLFYFAESPFFDQSSNNGIYVHQAAFNPQMQAKMFTREQFE-AVLSQMPNGVEFR 84
Query: 88 LSE-----VMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
++ V ++VI KQ+R+ + VTP+ Y+++ +IYQAP ++ +++I
Sbjct: 85 VAHAPADMVTGTGVWVIVKQERERGKGVTPIAHYFLVGENIYQAPTFGDIMNSKI 139
>gi|156048222|ref|XP_001590078.1| hypothetical protein SS1G_08842 [Sclerotinia sclerotiorum 1980]
gi|154693239|gb|EDN92977.1| hypothetical protein SS1G_08842 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 355
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 28 ICFRDQLWL-NTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------IHPLDI----- 75
I +RD WL L N + YF S F+DR N L +++ ++ L
Sbjct: 11 IQWRDPQWLAQNTGLHENTVLHYFAQSPFFDRVSKNAILTIQAQMNPNLMYLLGTRAAFE 70
Query: 76 SQLSKMTGIEYMLSEVMEP---------HLFVIRKQKR----DGPEKVTPMLTYYVLDGS 122
+L M+G+E+++S+ EP ++VIRKQ R +++T +Y+V+ +
Sbjct: 71 GRLKSMSGLEFIVSQ--EPAEKTPGSGTGVWVIRKQTRRKRPQEDDEITIHASYFVVGEN 128
Query: 123 IYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKI 158
IY AP +V S A T A SK+ ++
Sbjct: 129 IYMAPTAADVLSTF---------NALTNAISKVSEL 155
>gi|70984156|ref|XP_747597.1| RNA polymerase II transcription mediator complex subunit (Med6)
[Aspergillus fumigatus Af293]
gi|74667589|sp|Q4WDH9.1|MED6_ASPFU RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|66845224|gb|EAL85559.1| RNA polymerase II transcription mediator complex subunit (Med6),
putative [Aspergillus fumigatus Af293]
gi|159122383|gb|EDP47504.1| RNA polymerase II transcription mediator complex subunit (Med6)
[Aspergillus fumigatus A1163]
Length = 324
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEGRLRTMQGLEFVVA 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G E +V + T++V+ IY AP + +
Sbjct: 87 YDPLQAAAQTDTQFAHEPSNVWVIRKQMRRKRAGQEDEVVVLATFFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 147 VVGNRILSAVTSLTSLLKTAST 168
>gi|389644344|ref|XP_003719804.1| hypothetical protein MGG_04038 [Magnaporthe oryzae 70-15]
gi|351639573|gb|EHA47437.1| hypothetical protein MGG_04038 [Magnaporthe oryzae 70-15]
gi|440470089|gb|ELQ39178.1| mediator of RNA polymerase II transcription subunit 6 [Magnaporthe
oryzae Y34]
gi|440477038|gb|ELQ58182.1| mediator of RNA polymerase II transcription subunit 6 [Magnaporthe
oryzae P131]
Length = 328
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 44 NMIFDYFTLSLFYDRTCNN-----------EQLRMRSIHPLDISQLSKMTGIEYMLSE-- 90
N I YF S F+D T NN QL + + ++L +M+G+EY++++
Sbjct: 30 NTILYYFAASPFFDPTSNNAVVFSQAVRNQSQLHIIATRQAFEARLREMSGLEYIVAQEP 89
Query: 91 -----VMEPHLFVIRKQKRD---------GPEKVTPMLTYYVLDGSIYQAPQLCNVF 133
M ++VIRKQ R P+++ Y+V+ +IY AP L N+
Sbjct: 90 AETGPGMGTGVWVIRKQTRRKVKGSNGFPAPDEIEVHSDYFVVGENIYMAPSLANIL 146
>gi|159481374|ref|XP_001698754.1| hypothetical protein CHLREDRAFT_177355 [Chlamydomonas reinhardtii]
gi|158273465|gb|EDO99254.1| predicted protein [Chlamydomonas reinhardtii]
Length = 166
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 39 YPLDRNMIFDYFTLSLFYDR----------TCNNEQLRMRSIHPLDISQLSKMTGI--EY 86
+PLDR YF S F+ T NN + R+ + P L + E+
Sbjct: 20 FPLDRFKALAYFEQSSFFAAAGRDANGQPITVNNTEARLAGLDPAVPGVLESLPHGRPEF 79
Query: 87 MLSEVMEPHLFVIRKQKRDGP---EKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+L EP+ F IRKQ R E+ + YY+ + I QAP V AR+ R
Sbjct: 80 VLENSQEPNAFTIRKQIRTSANPQERPLVLAYYYIANNKIMQAPSAHQVTHARLQRCTFA 139
Query: 144 IQKAF 148
+Q+ F
Sbjct: 140 LQQGF 144
>gi|158564112|sp|Q0CH76.2|MED6_ASPTN RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
Length = 324
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ + +L M G+E+++S
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNETFRHFVETREAFEGRLKTMQGLEFVVS 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VI KQ KR G E +V + T++V+ IY AP + +
Sbjct: 87 YDPLQAAAQSNGQFAHEPSNIWVIHKQTRRKRPGLEDEVEVLSTFFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TAAS
Sbjct: 147 VVGNRILSAVTSLTNLMKTAAS 168
>gi|367025547|ref|XP_003662058.1| hypothetical protein MYCTH_2302141 [Myceliophthora thermophila ATCC
42464]
gi|347009326|gb|AEO56813.1| hypothetical protein MYCTH_2302141 [Myceliophthora thermophila ATCC
42464]
Length = 176
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 25/120 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDIS-----------QLSKMTGIEYMLS 89
+ N + YF S FYDRT NNE L + ++ +++ +L M+G+E++++
Sbjct: 28 IHSNSVLFYFAQSPFYDRTSNNEVLFQQGLNNPNVTPYLATRELFEGRLKTMSGLEFVVA 87
Query: 90 EVMEP---------HLFVIRKQKRDG---PEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP ++VI KQ R +++ TY+V+ +IY A ++ S+RI
Sbjct: 88 Q--EPAETGPGAGTGVWVINKQTRRKQTPQDEIIVHGTYFVVGENIYMAASFADILSSRI 145
>gi|302421146|ref|XP_003008403.1| mediator of RNA polymerase II transcription subunit 6 [Verticillium
albo-atrum VaMs.102]
gi|261351549|gb|EEY13977.1| mediator of RNA polymerase II transcription subunit 6 [Verticillium
albo-atrum VaMs.102]
Length = 275
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNE------------QLRMRSIHPLDISQLSKM-TGIEYM 87
+ N + YF S F+D++ NN Q +M + + + LS+M G+E+
Sbjct: 26 IHSNSVLFYFAESPFFDQSSNNGIYVHQAAFNPQMQAKMFTREQFE-AVLSQMPNGVEFR 84
Query: 88 LSE-----VMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
++ V ++VI KQ+R+ + VTP+ Y+++ +IYQAP ++ +++I
Sbjct: 85 VAHAPADMVTGTGVWVIVKQERERGKGVTPIAHYFLVGENIYQAPTFGDIMNSKI 139
>gi|317035286|ref|XP_001396588.2| mediator of RNA polymerase II transcription subunit 6 [Aspergillus
niger CBS 513.88]
gi|158513211|sp|A2R4I0.2|MED6_ASPNC RecName: Full=Mediator of RNA polymerase II transcription subunit
6; AltName: Full=Mediator complex subunit 6
gi|350636072|gb|EHA24432.1| hypothetical protein ASPNIDRAFT_40332 [Aspergillus niger ATCC 1015]
Length = 323
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E+++S
Sbjct: 27 LHSNNILFYFAESPFFDPTSNNASLAIQANYNEAFRHFVETREAFEGRLKTMQGLEFVVS 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDG-PEKVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G ++V + TY+++ IY AP + +
Sbjct: 87 YDPIQAAAQPDGRFAHEPSNIWVIRKQNRRKRTGLDDEVAVLSTYFIVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 147 VVGNRILSAVTSLTSLLKTAST 168
>gi|358375640|dbj|GAA92219.1| HATPase_c domain protein [Aspergillus kawachii IFO 4308]
Length = 2074
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRS------IHPLDISQ-----LSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ + L M G+E+++S
Sbjct: 1778 LHSNNILFYFAESPFFDPTSNNASLAIQANYNEAFRHFVETREAFEGRLKTMQGLEFVVS 1837
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G E +V + TY+++ IY AP + +
Sbjct: 1838 YDPIQAAAQPDGRFAHEPSNIWVIRKQNRRKRTGLEDEVVVLSTYFIVGDCIYMAPSVAS 1897
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 1898 VVGNRILSAVTSLTSLLKTAST 1919
>gi|406863369|gb|EKD16417.1| Mediator of RNA polymerase II transcription subunit 6 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 333
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
+ N + YF+ S F+D+T NN L ++ ++ +L M+G+E++++
Sbjct: 25 VHENSVLHYFSHSPFFDQTSNNAILASQATFNPNLFEVLQTRAAFEGRLKTMSGLEFVIA 84
Query: 90 EV---MEP----HLFVIRKQKR----DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSAR-- 136
E M P ++VIRKQ R +++T Y+V+ +IY A + ++ R
Sbjct: 85 EQPEEMAPGTGTGIWVIRKQTRRKVPSEEDEITIHSNYFVVGDNIYMASTVADILCNRTM 144
Query: 137 -IGRALHYIQKAFTTAASKLEKIGYV------DAENDGGTPLHSKAGKETIDLKE 184
I +L+ + + TT +G+V P S+A KE L E
Sbjct: 145 AIISSLNKVATSMTTLPDFSPALGHVYIPPPTSKRGKNVEPQLSRASKENTPLPE 199
>gi|115386222|ref|XP_001209652.1| hypothetical protein ATEG_06966 [Aspergillus terreus NIH2624]
gi|114190650|gb|EAU32350.1| hypothetical protein ATEG_06966 [Aspergillus terreus NIH2624]
Length = 1154
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E+++S
Sbjct: 857 LHSNNILFYFAESPFFDATSNNASLAIQANYNETFRHFVETREAFEGRLKTMQGLEFVVS 916
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VI KQ KR G E +V + T++V+ IY AP + +
Sbjct: 917 YDPLQAAAQSNGQFAHEPSNIWVIHKQTRRKRPGLEDEVEVLSTFFVVGDCIYMAPSVAS 976
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TAAS
Sbjct: 977 VVGNRILSAVTSLTNLMKTAAS 998
>gi|134082101|emb|CAK42218.1| unnamed protein product [Aspergillus niger]
Length = 300
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 30/141 (21%)
Query: 42 DRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLSE 90
D +++F YF S F+D T NN L +++ H ++ +L M G+E+++S
Sbjct: 6 DASILF-YFAESPFFDPTSNNASLAIQANYNEAFRHFVETREAFEGRLKTMQGLEFVVSY 64
Query: 91 -------------VMEP-HLFVIRKQ---KRDG-PEKVTPMLTYYVLDGSIYQAPQLCNV 132
EP +++VIRKQ KR G ++V + TY+++ IY AP + +V
Sbjct: 65 DPIQAAAQPDGRFAHEPSNIWVIRKQNRRKRTGLDDEVAVLSTYFIVGDCIYMAPSVASV 124
Query: 133 FSARIGRALHYIQKAFTTAAS 153
RI A+ + TA++
Sbjct: 125 VGNRILSAVTSLTSLLKTAST 145
>gi|310794435|gb|EFQ29896.1| MED6 mediator sub complex component [Glomerella graminicola M1.001]
Length = 318
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI-HPLDI----------SQLSKMTGIEYMLS 89
+ N + YF S F+DR NN + +++ +P + +L KM+G+E+ +
Sbjct: 26 IHSNSVLFYFAESPFFDRQSNNAVITNQAMFNPALLKNLATREAFEGELDKMSGLEFRVL 85
Query: 90 E-----VMEPHLFVIRKQKRD-----GPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
V ++ I KQ R + P+ Y+V+ +IYQAP L ++ S+RI
Sbjct: 86 HAPADMVTGTGVWTIVKQTRQKNLDRNRMETRPLAYYFVVGENIYQAPTLGDILSSRIES 145
Query: 140 ALHYIQKAF 148
++K
Sbjct: 146 IAEAMRKVL 154
>gi|380479110|emb|CCF43216.1| MED6 mediator sub complex component [Colletotrichum higginsianum]
Length = 335
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI-HPLDI----------SQLSKMTGIEYMLS 89
+ N + YF S F+DR NN + +++ +P + +L KM+G+E+ +
Sbjct: 26 IHSNSVLFYFAESPFFDRQSNNAVITNQAMFNPALLKNLATREAFEGELDKMSGLEFRVL 85
Query: 90 E-----VMEPHLFVIRKQKRD-----GPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
V ++ I KQ R + P+ Y+V+ +IYQAP L ++ S+RI
Sbjct: 86 HAPADMVTGTGVWTIVKQTRQKNIDRNRMETRPLAYYFVVGENIYQAPTLGDILSSRIES 145
Query: 140 ALHYIQKAF 148
++K
Sbjct: 146 IAEAMRKVL 154
>gi|453087501|gb|EMF15542.1| MED6-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 387
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 47/162 (29%)
Query: 34 LWLNTY---PLDRNMIFDYFTLSLFYDRTCNN----EQLRM-RSIHPLDISQ------LS 79
W+N +D NMI Y T S F++ + N EQ ++ +IH + ++ L
Sbjct: 21 WWVNEMGGKAMDENMIHRYMTESPFFEWSSKNGLLFEQGKVDWAIHTMCNNRKALEENLR 80
Query: 80 KMTGIEYMLSEVMEPH---------------LFVIRKQKRD----GPE------------ 108
+ G+E+M+ V EP ++VIRKQ R GP
Sbjct: 81 QKPGLEFMI--VQEPQPVADKELAAQGVTTGVYVIRKQDRQRATPGPRVRPPSVILEDRW 138
Query: 109 KVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
++T + TY+++ ++YQ+P + +V R+ A + K T
Sbjct: 139 ELTVLGTYFIVGQNVYQSPSVFDVIENRLLSAASTLNKFVDT 180
>gi|302510541|ref|XP_003017222.1| hypothetical protein ARB_04099 [Arthroderma benhamiae CBS 112371]
gi|291180793|gb|EFE36577.1| hypothetical protein ARB_04099 [Arthroderma benhamiae CBS 112371]
Length = 321
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H + Q L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDSTSNNATLTLQAMHNENFRQFIETREAFEGRLKNMQGLEFVVA 86
Query: 90 EV---------------MEP-HLFVIRKQKR----DGPEKVTPMLTYYVLD 120
+ EP +++VIRKQ R E+V + TY+VL
Sbjct: 87 QDPIQEAAAAVAAGSAPQEPSNIWVIRKQNRRRQPGMQEEVQILATYFVLS 137
>gi|444515764|gb|ELV10982.1| Mediator of RNA polymerase II transcription subunit 6 [Tupaia
chinensis]
Length = 83
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 73 LDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKV 110
L + L++M G+EY+L EP LF+IRKQ+R P +V
Sbjct: 4 LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPAQV 41
>gi|401825091|ref|XP_003886641.1| RNA polymerase II transcriptional regulation mediator
[Encephalitozoon hellem ATCC 50504]
gi|395459786|gb|AFM97660.1| RNA polymerase II transcriptional regulation mediator
[Encephalitozoon hellem ATCC 50504]
Length = 136
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 76 SQLSKMTGIEYMLSEVM-EPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134
S+LS M GI Y L E LFVIRK G + + + YY++ G +Y AP +++
Sbjct: 17 SKLSSMVGIFYELEGSNDEKTLFVIRKAYNHG-DTIETLGMYYIIHGHVYAAPTNYSIYR 75
Query: 135 ARIGRAL 141
R+G ++
Sbjct: 76 CRMGNSM 82
>gi|66358022|ref|XP_626189.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46227267|gb|EAK88217.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 199
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 96 LFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA 152
+F+I+K + ++ P+ YY+L G+IY+AP L NVF R A ++K F T +
Sbjct: 84 IFIIQKFFIEFQREI-PLNIYYILSGTIYEAPTLSNVFLHRTAEAFLSMEKIFDTLS 139
>gi|429857749|gb|ELA32597.1| mediator of rna polymerase ii transcription subunit 6
[Colletotrichum gloeosporioides Nara gc5]
Length = 171
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 77 QLSKMTGIEYMLSE-----VMEPHLFVIRKQKRD-GPEK----VTPMLTYYVLDGSIYQA 126
+L KMTG+E+ + V ++VI KQ R PE+ P+ Y+V + +IYQA
Sbjct: 69 ELDKMTGLEFRVLHAPADMVTGTGVWVIVKQMRQKNPERNRIETKPLAYYFVCNENIYQA 128
Query: 127 PQLCNVFSARI 137
P L ++ S++I
Sbjct: 129 PTLGDILSSKI 139
>gi|429318685|emb|CCP31878.1| pneumococcal surface protein PspA [Streptococcus pneumoniae
SPN034183]
Length = 813
Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 200 PPAPPPPPFPEGYAP-PQTEEAEKDPETQQTAEPQPPAIDPIIDQGPA 246
P P P P PE AP P+ E+ P+ +Q A+P+ PA +P + PA
Sbjct: 463 PEQPAPAPKPEQPAPAPKPEQPAPAPKPEQPAKPEKPAEEPTQPEKPA 510
>gi|125554556|gb|EAZ00162.1| hypothetical protein OsI_22167 [Oryza sativa Indica Group]
Length = 508
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 207 PFPEGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKR 248
PFPEGY P + E+A D +E PP +DPIIDQGPAKR
Sbjct: 466 PFPEGYVPSEQEKASDDL---LASEALPPQVDPIIDQGPAKR 504
>gi|386826732|ref|ZP_10113839.1| hypothetical protein BegalDRAFT_0526 [Beggiatoa alba B18LD]
gi|386427616|gb|EIJ41444.1| hypothetical protein BegalDRAFT_0526 [Beggiatoa alba B18LD]
Length = 551
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 57 DRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRK------QKRDGPEKV 110
++ N E L ++ DI ++ TG+ +E + H V+ + + ++
Sbjct: 250 EQLLNREDLSELDVYVTDIHDFAERTGLSVNTTEPLYLHHLVLYQLHSQPLRNHYAQQQE 309
Query: 111 TPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTP 170
T Y L IYQA L +F+ IG +L+Y+Q++ A + G +
Sbjct: 310 TRDFFYRSLARRIYQATAL--IFAGAIGISLYYLQQSLDIQAEISQTTGQLVKFQQEIRQ 367
Query: 171 LHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPP 205
LH+ + +D+ +++ V QI L + P+ P
Sbjct: 368 LHASKAQLPLDILQIQNVIQIGHYLHGQHVPSLRP 402
>gi|300175098|emb|CBK20409.2| unnamed protein product [Blastocystis hominis]
Length = 261
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 23 TDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMT 82
TD F DQ +L + L ++ + +YF S FY + N ++ QL T
Sbjct: 50 TDNLSTVFIDQSFLLS-ELTKDNVIEYFKSSPFYTDSVN---------FRYEVEQLDDQT 99
Query: 83 GIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 142
+ F + ++ EKV + YYVL+G IYQ P L +V R+ +
Sbjct: 100 DGNAFFKII---KYFTHQSDEKGDVEKVVAV--YYVLNGEIYQCPDLYSVAKFRLYNCIE 154
Query: 143 YIQKAFTTAASKLEK-IGY 160
+ + + S+L K +GY
Sbjct: 155 ALNRVY----SELRKYVGY 169
>gi|170078312|ref|YP_001734950.1| hypothetical protein SYNPCC7002_A1705 [Synechococcus sp. PCC 7002]
gi|169885981|gb|ACA99694.1| TPR repeat containing protein [Synechococcus sp. PCC 7002]
Length = 382
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 137 IGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQ 196
IG L YI AF + KL++ + A D G L + GK TI++ E DQ LA L+
Sbjct: 90 IGTRLLYISNAFKNS-PKLQR--FARAFGDTGQQLVTGRGKITIEIWEYDGADQ-LAELE 145
Query: 197 RKLPPAPPPPPFPEGYAPPQTEEAEKDPETQQTAEP---QPPAIDPIIDQGPAKRM 249
P P P + + A P+T E PE + AEP P I+P + P + M
Sbjct: 146 TT-PENTPVPEYSQE-ASPETVEPVVTPEVETAAEPLSEMPETINPEEPETPIQEM 199
>gi|321461901|gb|EFX72928.1| hypothetical protein DAPPUDRAFT_200640 [Daphnia pulex]
Length = 300
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 24 DMTGICFRDQLWLNTYPL-DRNMIFDYFTLSLFYD-RTCNNEQLRMRSIHPLDISQLSKM 81
D+ F +Q WL L D +F Y+TL+ D +T E + + ++P + SK+
Sbjct: 32 DIVQRLFGNQTWLKVQWLSDLTCVFLYYTLTTLLDNQTLGEEYVGLIQVNPTLRALPSKL 91
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRD----GPEKV---TPMLTYYVLDGSIYQAPQLCNVFS 134
T + + +V+ P LF +K D PE + TP Y+L + + + +
Sbjct: 92 TRLTAITLQVLGPRLFSHVMKKLDTWLRNPENIPDLTPKARDYIL--LLTELIHSSSFWV 149
Query: 135 ARIGRALHYIQKAFTTAASKLEKIGYVDA 163
R+ L Y+ + + ++ KI YV A
Sbjct: 150 GRLNLVLFYMYGKYYRISQRMAKIHYVFA 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,598,335,091
Number of Sequences: 23463169
Number of extensions: 205512101
Number of successful extensions: 2082451
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 1258
Number of HSP's that attempted gapping in prelim test: 2036323
Number of HSP's gapped (non-prelim): 39515
length of query: 251
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 112
effective length of database: 9,097,814,876
effective search space: 1018955266112
effective search space used: 1018955266112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)