BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025523
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IXJ7|MED6_ARATH Mediator of RNA polymerase II transcription subunit 6
OS=Arabidopsis thaliana GN=MED6 PE=1 SV=1
Length = 298
Score = 296 bits (757), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 183/273 (67%), Gaps = 43/273 (15%)
Query: 20 PPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLS 79
PPGTDMTGI FRDQLW+N+YPLDRN IFDYF LS FYD TCNNE LR RSIHPLD+S LS
Sbjct: 28 PPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLS 87
Query: 80 KMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGR 139
KMTG+EYML++ EP+LFV RKQKRDGPEKVTPMLTYY+LDGSIYQAPQLC+VF+AR+ R
Sbjct: 88 KMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSR 147
Query: 140 ALHYIQKAFTTAASKLEKI-------------------------------------GY-- 160
++ I KAFT AASKLE I G+
Sbjct: 148 TIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGEQVYGFNK 207
Query: 161 --VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRKLPPAPPPPPFPEGYAPPQTE 218
D EN P SK ET+DLKE+KRVD IL SL RKL P PPPPPFPEGY Q
Sbjct: 208 FLFDTENQ-NEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGYV-SQEA 265
Query: 219 EAEKDPETQQTAEPQPPAIDPIIDQGPAKRMKI 251
EK+ Q E QPP +DPIIDQGPAKRMK
Sbjct: 266 LGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298
>sp|Q54PN3|MED6_DICDI Putative mediator of RNA polymerase II transcription subunit 6
OS=Dictyostelium discoideum GN=med6 PE=3 SV=1
Length = 267
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 112/201 (55%), Gaps = 11/201 (5%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTG 83
D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G
Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 121
Query: 84 IEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHY 143
+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ +
Sbjct: 122 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 181
Query: 144 IQKAFTTAASKLEK---IGYVDAENDGGTPLHSK-AGKETIDLKEVKRVDQILASLQRKL 199
+ +AF + +S + GY + SK A +++ KR+DQ++ SL K
Sbjct: 182 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 241
Query: 200 PPAPPPPPFPE----GYAPPQ 216
P P P+ G P Q
Sbjct: 242 PAINRPVENPQQMGGGITPQQ 262
>sp|O75586|MED6_HUMAN Mediator of RNA polymerase II transcription subunit 6 OS=Homo
sapiens GN=MED6 PE=1 SV=2
Length = 246
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P P E P+T EE E QQT + P
Sbjct: 184 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPIPETVKPEEKETTKNVQQTVSAKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>sp|Q921D4|MED6_MOUSE Mediator of RNA polymerase II transcription subunit 6 OS=Mus
musculus GN=Med6 PE=2 SV=2
Length = 246
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>sp|Q5RD94|MED6_PONAB Mediator of RNA polymerase II transcription subunit 6 OS=Pongo
abelii GN=MED6 PE=2 SV=1
Length = 246
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 39/252 (15%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAASKLE---KIGYV-----DAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
H IQ AF A S GY E D P +K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRP-KAKRKEEPSSIFQRQRVDALLL 182
Query: 194 SLQRKLPP-----APPPPPFP------EGYAPPQT---EEAEKDPETQQTAEPQPPAIDP 239
L++K PP P P P E P+T EE E QQT + P
Sbjct: 183 DLRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGP---- 238
Query: 240 IIDQGPAKRMKI 251
P KRM++
Sbjct: 239 -----PEKRMRL 245
>sp|Q3SZY9|MED6_BOVIN Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus
GN=MED6 PE=2 SV=1
Length = 246
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 37/251 (14%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + DYF+ FYDRTCNNE ++M+ L + L++M
Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+
Sbjct: 64 VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E K +E + + +RVD +L
Sbjct: 124 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 183
Query: 195 LQRKLPP---------APPPPPFPEGYAPP-----QTEEAEKDPETQQTAEPQPPAIDPI 240
L++K PP P P + A P ++EE E QQT + P
Sbjct: 184 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGP----- 238
Query: 241 IDQGPAKRMKI 251
P KRM++
Sbjct: 239 ----PEKRMRL 245
>sp|Q7Q107|MED6_ANOGA Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles
gambiae GN=MED6 PE=3 SV=3
Length = 267
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIE 85
I + D W+ L+ + DYF+ FYDRTCNNE +RM+ + L+ MTG+E
Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVE 73
Query: 86 YMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQ 145
Y+ V +P L+VIRKQ R P + TPM YY++ G++YQAP L +VF++RI +H++Q
Sbjct: 74 YIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQ 133
Query: 146 KAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKEVKRVDQILA 193
AF A+S GY + + T + +E + + +RVD +L
Sbjct: 134 TAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLG 193
Query: 194 SLQRKLP-PAPPPPPFPEGYAPPQTEEAEKD 223
L RK P P P P G P T A +
Sbjct: 194 DLLRKFPLPLPQMTNNPTGGNPSDTANASNN 224
>sp|Q6IQ63|MED6_DANRE Mediator of RNA polymerase II transcription subunit 6 OS=Danio
rerio GN=med6 PE=2 SV=1
Length = 254
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 14/188 (7%)
Query: 24 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKM 81
++ GI + D W+ L+ + + +YF+ FYDRTCNNE ++M+ + L+++
Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQL 63
Query: 82 TGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+
Sbjct: 64 VGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAV 123
Query: 142 HYIQKAFTTAA-------SKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRVDQILAS 194
H IQ AF A SK + D E SK +E L + +RVD +L
Sbjct: 124 HGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLD 183
Query: 195 LQRKLPPA 202
L+ K PP
Sbjct: 184 LRNKFPPT 191
>sp|Q8MSX2|MED6_DROME Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila
melanogaster GN=MED6 PE=1 SV=1
Length = 249
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 46 IFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQK 103
+ DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ
Sbjct: 29 VMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQH 85
Query: 104 RDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY 160
R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S GY
Sbjct: 86 RHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGY 145
Query: 161 V-DAENDGGTPLHSKAGKETID---------LKEVKRVDQILASLQRKLPPAPPP 205
D ++ SK+ K+ + L + +RVD +LA L RK PP PP
Sbjct: 146 TWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP 200
>sp|Q6C3T0|MED6_YARLI Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED6 PE=3 SV=1
Length = 227
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 21/173 (12%)
Query: 24 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPL 73
++ + +R W+ + L + + DYF S FYDR NN+ LRM++ + P
Sbjct: 3 NLDEVQWRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQ 62
Query: 74 DISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
Q L KMTGIE++++ V EP L+VI+KQ R P++ TP+ TY+V++ ++Y AP + +
Sbjct: 63 HFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAI 122
Query: 133 FSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 175
+R+ ++++A A S + Y D++ +D TP SKA
Sbjct: 123 MQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175
>sp|Q5A2Z1|MED6_CANAL Mediator of RNA polymerase II transcription subunit 6 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MED6 PE=3
SV=1
Length = 263
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYML 88
L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE+++
Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVI 79
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
+ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+
Sbjct: 80 AYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
>sp|Q9US45|MED6_SCHPO Mediator of RNA polymerase II transcription subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med6 PE=1 SV=1
Length = 216
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 16 AAPPPPGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPL 73
A+ PP D+T I +R W+ + L + +YF+ S FY NNE L+M+S + L
Sbjct: 2 ASGAPPSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNAL 61
Query: 74 DI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
D+ SQL ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP
Sbjct: 62 DLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNA 121
Query: 130 CNVFSARIGRALHYIQKAFTTAASKLEKI 158
+ + R+ A + QKA T K+EK
Sbjct: 122 YTLLATRMLNATYCFQKALT----KIEKF 146
>sp|Q4PHA6|MED6_USTMA Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=MED6 PE=3 SV=1
Length = 254
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 12/124 (9%)
Query: 39 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEY 86
+PL + + YF S F+DR NNEQ+RM++I + +L + TG+E+
Sbjct: 53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEF 112
Query: 87 MLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQK 146
+L EP FV++K+ R P + TP+ YYV++ SIYQAP L ++ + R+ ++ ++
Sbjct: 113 VLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRM 172
Query: 147 AFTT 150
+ +T
Sbjct: 173 SLST 176
>sp|Q6CTT6|MED6_KLULA Mediator of RNA polymerase II transcription subunit 6
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED6 PE=3
SV=1
Length = 268
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 42/157 (26%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ T+ L + + DYF+ S F+D+T NN+ ++M
Sbjct: 16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAG 75
Query: 68 --------RS-------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTP 112
RS +H + +L KM GIEY+L V EP L++IRKQ+RDGP K T
Sbjct: 76 AGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTT 135
Query: 113 MLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFT 149
+ YYV+ ++YQ+P + + R+ +++ + +
Sbjct: 136 LRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLS 172
>sp|Q6BIH7|MED6_DEBHA Mediator of RNA polymerase II transcription subunit 6
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=MED6 PE=3 SV=2
Length = 257
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 10/115 (8%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQ 77
I +++ W+ + L + DYF+ S FYDRT NN+ LRM+ +I+P S+
Sbjct: 9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSK 68
Query: 78 LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNV 132
L +MTGIE++++ EP ++IRKQ R P++V YY++ +IYQAP++ ++
Sbjct: 69 LVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDI 123
>sp|Q75EY3|MED6_ASHGO Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=MED6 PE=3 SV=1
Length = 235
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 32/134 (23%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS------------------------- 69
W+ ++ L + + DYF+ S F+D+T NN ++M+
Sbjct: 16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQA 75
Query: 70 ------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSI 123
+ L +L+K+ GIEY+L+ V EP +V+RKQ+R G ++VT + YY++ ++
Sbjct: 76 IWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANV 134
Query: 124 YQAPQLCNVFSARI 137
YQAP +V R+
Sbjct: 135 YQAPTAYSVVQNRL 148
>sp|Q60WM1|MED6_CAEBR Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1
Length = 246
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 12 GAPPAAPPPPGTDMTGICFRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRS 69
G P ++ P M+ FR+ W + ++R+ + DYF ++FY+ N+Q++M++
Sbjct: 6 GPPSSSKQEPTMFMS---FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQN 61
Query: 70 IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQ 128
I + + L M GI+Y+L +P L+++ KQ+R+ V+P+ YYV++GS++QAP
Sbjct: 62 ITNRSVDECLRNMQGIQYVL-WYSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPD 120
Query: 129 LCNVFSARIGRALHYIQKAF 148
+ + +R+ AL ++ AF
Sbjct: 121 MHTLVQSRLLGALEPLRNAF 140
>sp|Q8SWN5|MED6_ENCCU Mediator of RNA polymerase II transcription subunit 6
OS=Encephalitozoon cuniculi (strain GB-M1) GN=MED6 PE=3
SV=1
Length = 177
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 27 GICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGI 84
I F DQ +L + PLD + +YF+ S FYD++CNNE L+M++ LD S+L M GI
Sbjct: 7 SISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGI 66
Query: 85 EYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 141
Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++
Sbjct: 67 FYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
>sp|Q6FW12|MED6_CANGA Mediator of RNA polymerase II transcription subunit 6 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MED6 PE=3 SV=1
Length = 302
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 49/152 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM----------------------RSIHP 72
W+ + L + + DYF S F+D+T NN ++M R H
Sbjct: 15 WIQAFGLRTDNVLDYFAESPFFDKTANNHVIKMQRQFSQLPNNGAAAGSMNPETMRDAHS 74
Query: 73 LDISQ---------------------------LSKMTGIEYMLSEVMEPHLFVIRKQKRD 105
D+ Q L K+ GIEY+L+ V EP +VI+KQ+R
Sbjct: 75 EDMGQEQEFSYVDPIRRAILEKYVVHAFLERELMKVRGIEYVLANVREPDFWVIKKQRRT 134
Query: 106 GPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 137
P + P+ TYY++ ++YQ+P + + +R+
Sbjct: 135 SPTAIEPLQTYYIVGANVYQSPTVFKIVQSRL 166
>sp|Q9N337|MED6_CAEEL Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1
Length = 250
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 28 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGI 84
+ FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI
Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGI 77
Query: 85 EYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 144
+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL +
Sbjct: 78 QYVL-WYSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPL 136
Query: 145 QKAF 148
+ AF
Sbjct: 137 RNAF 140
>sp|Q9HED8|MED6_NEUCR Mediator of RNA polymerase II transcription subunit 6 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=med-6 PE=3 SV=1
Length = 360
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 31/139 (22%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQ-----------LSKMTGIEYMLS 89
+ N I YF S FYD+T NNE + + ++ +SQ L +M+G+E++++
Sbjct: 28 IHSNSILYYFAQSPFYDKTSNNEVVFQQGLNNQAMSQYLATRELFESRLKEMSGLEFIVA 87
Query: 90 E-------VMEPHLFVIRKQKR------------DGP-EKVTPMLTYYVLDGSIYQAPQL 129
+ M ++VI KQ R DGP +++ Y+V+ +IY AP L
Sbjct: 88 QEPAETGPGMGTGVWVINKQTRRKRPPTNPARPEDGPPDEIIVHSVYFVVGENIYMAPTL 147
Query: 130 CNVFSARIGRALHYIQKAF 148
+V S+RIG I K
Sbjct: 148 ADVLSSRIGAIATAITKTI 166
>sp|P38782|MED6_YEAST Mediator of RNA polymerase II transcription subunit 6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MED6 PE=1 SV=1
Length = 295
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 58/179 (32%)
Query: 35 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRM--------------------------- 67
W+ + L + DYF S F+D+T NN+ ++M
Sbjct: 16 WIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGK 75
Query: 68 ---------------RSI---HPLDIS---QLSKMTGIEYMLSEVMEPHLFVIRKQKR-- 104
R I +P+ + +L K+ G EY+LS V EP +VIRKQ+R
Sbjct: 76 NGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTN 135
Query: 105 -------DGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE 156
GPE + P+ YY++ +IYQ+P + + +R+ +++ + +E
Sbjct: 136 NSGVGSAKGPE-IIPLQDYYIIGANIYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIE 193
>sp|P0CO74|MED6_CRYNJ Mediator of RNA polymerase II transcription subunit 6
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=MED6 PE=3 SV=1
Length = 357
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM-RSI------HPLDISQLSK-MTGIEYMLSEVMEPH 95
++ DYF S F+D NN LR R I H + +L+ M+G EY+++ P
Sbjct: 35 DLAMDYFAYSPFWDAKSNNNVLRTQRRIENPAYGHAEEKVELNAFMSGFEYVVAHSQPPD 94
Query: 96 LFVIRKQKRDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
LFVI +++ + K + +++L IYQ P L +V S R+ A I K +T
Sbjct: 95 LFVIHRREVESSGKRDRVTGAWFILHEKIYQCPTLFDVMSTRLKNATSLISKTLST 150
>sp|P0CO75|MED6_CRYNB Mediator of RNA polymerase II transcription subunit 6
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=MED6 PE=3 SV=1
Length = 357
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 44 NMIFDYFTLSLFYDRTCNNEQLRM-RSI------HPLDISQLSK-MTGIEYMLSEVMEPH 95
++ DYF S F+D NN LR R I H + +L+ M+G EY+++ P
Sbjct: 35 DLAMDYFAYSPFWDAKSNNNVLRTQRRIENPAYGHAEEKVELNAFMSGFEYVVAHSQPPD 94
Query: 96 LFVIRKQKRDGPEKVTPML-TYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 150
LFVI +++ + K + +++L IYQ P L +V S R+ A I K +T
Sbjct: 95 LFVIHRREVESSGKRDRVTGAWFILHEKIYQCPTLFDVMSTRLKNATSLISKTLST 150
>sp|A3LQ10|MED6_PICST Mediator of RNA polymerase II transcription subunit 6
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=MED6 PE=3 SV=2
Length = 263
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH-----PLDIS-------QLSKMTGIEYML 88
L + +YF+LS FYDRT NN+QL M+ P++ + +L +MTG+ +++
Sbjct: 22 LHTGNVLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVI 81
Query: 89 SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQL 129
+ EP ++IRKQ + P+ + YY++ ++YQAP++
Sbjct: 82 AYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKV 122
>sp|Q1E3Z7|MED6_COCIM Mediator of RNA polymerase II transcription subunit 6
OS=Coccidioides immitis (strain RS) GN=MED6 PE=3 SV=2
Length = 353
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 37/152 (24%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L ++++H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDPTSNNASLALQAMHNENLRPFIETRGAFEGRLKTMQGLEFIVA 86
Query: 90 E--VME------------------PHLFVIRKQKR------DGPEKVTPMLTYYVLDGSI 123
++E +++VIRKQ R G + V + TY+V+ S+
Sbjct: 87 HDPLLEAAAANAAAVARGEQPKEASNVWVIRKQMRRRSAAMGGQDDVQVLATYFVVGDSV 146
Query: 124 YQAPQLCNVFSARIGRALHYIQKAFTTAASKL 155
+ AP + +V R+ + + K +TA++ L
Sbjct: 147 FMAPSVWSVVGRRMLSTVTSLTKVLSTASALL 178
>sp|Q5AYT1|MED6_EMENI Mediator of RNA polymerase II transcription subunit 6 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=med6 PE=3 SV=2
Length = 325
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ ++L M G+E+M++
Sbjct: 28 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEARLKTMQGLEFMVA 87
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
V EP +++VIRKQ KR G E +V + T++V+ IY AP +
Sbjct: 88 YDPLQAAAGANAQFVHEPSNVWVIRKQTRRKRSGFEDEVVVLATFFVVGDCIYMAPSAAS 147
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 148 VIGNRILSAVTSLTSLLKTAST 169
>sp|Q2U9E7|MED6_ASPOR Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=med6 PE=3 SV=1
Length = 328
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYML- 88
L N I YF S F+D T NN L +++ + + +L M G+E+++
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNETLRHFVETREAFEGRLKTMQGLEFVVA 86
Query: 89 ------------SEVMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
S EP +++VIRKQ KR G E +V + TY+V+ IY AP + +
Sbjct: 87 YDPLQAAAQTETSFAHEPSNIWVIRKQTRRKRAGLEDEVVVLSTYFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V R+ A+ + TA+S
Sbjct: 147 VVGNRLLSAVTSLTSLLKTASS 168
>sp|Q4WDH9|MED6_ASPFU Mediator of RNA polymerase II transcription subunit 6
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=med6 PE=3 SV=1
Length = 324
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E++++
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEGRLRTMQGLEFVVA 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G E +V + T++V+ IY AP + +
Sbjct: 87 YDPLQAAAQTDTQFAHEPSNVWVIRKQMRRKRAGQEDEVVVLATFFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 147 VVGNRILSAVTSLTSLLKTAST 168
>sp|Q0CH76|MED6_ASPTN Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=med6 PE=3 SV=2
Length = 324
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDI-----------SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ + +L M G+E+++S
Sbjct: 27 LHSNNILFYFAESPFFDATSNNASLAIQANYNETFRHFVETREAFEGRLKTMQGLEFVVS 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDGPE-KVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VI KQ KR G E +V + T++V+ IY AP + +
Sbjct: 87 YDPLQAAAQSNGQFAHEPSNIWVIHKQTRRKRPGLEDEVEVLSTFFVVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TAAS
Sbjct: 147 VVGNRILSAVTSLTNLMKTAAS 168
>sp|A2R4I0|MED6_ASPNC Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=med6 PE=3 SV=2
Length = 323
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 41 LDRNMIFDYFTLSLFYDRTCNNEQLRMRSI------HPLDI-----SQLSKMTGIEYMLS 89
L N I YF S F+D T NN L +++ H ++ +L M G+E+++S
Sbjct: 27 LHSNNILFYFAESPFFDPTSNNASLAIQANYNEAFRHFVETREAFEGRLKTMQGLEFVVS 86
Query: 90 E-------------VMEP-HLFVIRKQ---KRDG-PEKVTPMLTYYVLDGSIYQAPQLCN 131
EP +++VIRKQ KR G ++V + TY+++ IY AP + +
Sbjct: 87 YDPIQAAAQPDGRFAHEPSNIWVIRKQNRRKRTGLDDEVAVLSTYFIVGDCIYMAPSVAS 146
Query: 132 VFSARIGRALHYIQKAFTTAAS 153
V RI A+ + TA++
Sbjct: 147 VVGNRILSAVTSLTSLLKTAST 168
>sp|Q1KKZ1|SKAP2_TAKRU Src kinase-associated phosphoprotein 2 OS=Takifugu rubripes
GN=skap2 PE=3 SV=1
Length = 329
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 129 LCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGTPLHSKAGKETIDLKEVKRV 188
C SA R+ + + A +++I +V + G P + G+E D +V ++
Sbjct: 173 FCFEISATDKRSYMFCASSVKEAEEWVKQIDFVLKDMTGIIPEEEEEGQELYD--DVGQM 230
Query: 189 DQILASLQRKLPPAPPPPPFPEGYAPPQT 217
D+I L + P+PPP P PP T
Sbjct: 231 DEIYEVLPEEDMPSPPPKVEPVSKHPPPT 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,756,562
Number of Sequences: 539616
Number of extensions: 4841837
Number of successful extensions: 53002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 453
Number of HSP's that attempted gapping in prelim test: 40006
Number of HSP's gapped (non-prelim): 10763
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)