Query 025523
Match_columns 251
No_of_seqs 128 out of 189
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 12:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgta2 d.153.1.1 (A:4-209) be 21.4 70 0.0051 25.1 5.6 52 76-134 109-160 (206)
2 d1jvra_ a.61.1.2 (A:) HTLV-II 13.2 1.3E+02 0.0097 22.7 5.0 16 186-201 79-94 (137)
3 d1ufza_ a.5.9.1 (A:) HBS1-like 11.8 28 0.0021 24.7 0.5 29 123-151 20-48 (83)
4 d1qmya_ d.3.1.2 (A:) FMDV lead 9.8 6.6 0.00048 30.9 -3.9 43 31-85 20-65 (156)
5 d1pfta_ g.41.3.1 (A:) Transcri 8.4 61 0.0045 20.2 1.2 11 238-248 36-46 (50)
6 d2a2ra1 a.45.1.1 (A:78-209) Cl 8.2 1.1E+02 0.0078 20.4 2.6 16 180-195 4-19 (132)
7 d1iwga1 d.58.44.1 (A:38-134) M 7.7 1.9E+02 0.014 19.4 3.9 32 75-106 29-60 (97)
8 d2fcia1 d.93.1.1 (A:1-105) Pho 7.3 1.7E+02 0.013 19.9 3.5 47 86-134 34-82 (105)
9 d1mhqa_ a.118.9.2 (A:) ADP-rib 7.0 1.6E+02 0.012 21.3 3.3 39 126-164 96-140 (143)
10 d1ebfa2 d.81.1.2 (A:151-340) H 7.0 1E+02 0.0073 23.4 2.1 37 112-163 16-59 (190)
No 1
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=21.44 E-value=70 Score=25.11 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=34.3
Q ss_pred hhhhhcCCceeEEeeecCCceEEEEEeeecCCCccccceeEEEEcCeEeeCCchhHHHH
Q 025523 76 SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFS 134 (251)
Q Consensus 76 ~~L~~m~GiEY~l~~~~ep~LfVIrKQ~R~s~~~v~pLa~YYIi~G~IYQAPsl~sVl~ 134 (251)
+.|+.+.|. |.++-.....+|++|-+. -++|| +|+..+|.++-|-++..++.
T Consensus 109 ~~l~~l~G~-Fa~vi~d~~~l~laRD~~-----G~KPL-yy~~~~~~~~fASe~kaLl~ 160 (206)
T d1jgta2 109 HAFRLVNGR-FATVVRTGDRVLLATDHA-----GSVPL-YTCVAPGEVRASTEAKALAA 160 (206)
T ss_dssp GGGGTCCEE-EEEEEEETTEEEEEECTT-----CCSCC-EEEEETTEEEEESCHHHHHT
T ss_pred HHHHHHHhh-hheeeeecceEEEEEecc-----cceeE-EEEEcCCceEechhhHHHHh
Confidence 346777784 433333344577665444 25677 78889999999998877754
No 2
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=13.19 E-value=1.3e+02 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhCCC
Q 025523 186 KRVDQILASLQRKLPP 201 (251)
Q Consensus 186 ~RvD~lL~~L~~kfPp 201 (251)
-||.-||+-|.+-...
T Consensus 79 GRv~ei~~iLi~~q~~ 94 (137)
T d1jvra_ 79 GRVVEIINILVKNQVS 94 (137)
T ss_dssp TTHHHHHHHHHTTTCC
T ss_pred ccHHHHHHHHHHccCC
Confidence 4899999999984433
No 3
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.85 E-value=28 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.5
Q ss_pred EeeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 025523 123 IYQAPQLCNVFSARIGRALHYIQKAFTTA 151 (251)
Q Consensus 123 IYQAPsl~sVl~sRl~sa~~~L~kaf~~~ 151 (251)
-|+.|.|..+=+.||.+|+.+|+..+-.+
T Consensus 20 s~~~~~Ls~~d~aRL~SCldqmR~VvGDs 48 (83)
T d1ufza_ 20 SLLNHQLSEIDQARLYSCLDHMREVLGDA 48 (83)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHccc
Confidence 35778888999999999999999887653
No 4
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=9.83 E-value=6.6 Score=30.93 Aligned_cols=43 Identities=37% Similarity=0.726 Sum_probs=26.3
Q ss_pred eCchhhccCCCCcchHHHhhh--cCCCcccCCCh-HHHHhhhCCCCChhhhhhcCCce
Q 025523 31 RDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNN-EQLRMRSIHPLDISQLSKMTGIE 85 (251)
Q Consensus 31 rDp~wL~~~~L~~~nvLdYFs--~SPFYDrtsNN-E~lrmQ~~~~l~~~~L~~m~GiE 85 (251)
+|.-|| |.+|.-|. .-||||..-.| |.+..+. ..+|.+.+|++
T Consensus 20 hdNcWL-------N~ilQLfryv~epfFd~~y~spenlt~~~-----I~~l~e~Tgl~ 65 (156)
T d1qmya_ 20 HDNAWL-------NAILQLFRYVEEPFFDWVYSSPENLTLEA-----IKQLEDLTGLE 65 (156)
T ss_dssp SSCHHH-------HHHHHHHHHHTCCTTHHHHTCSSCCHHHH-----HHHHHHHHCCC
T ss_pred ccchHH-------HHHHHHHHHcCccchhhccCChhhhhHHH-----HHHHHhhhcee
Confidence 355566 45777777 58999964322 2233333 35778888877
No 5
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.41 E-value=61 Score=20.25 Aligned_cols=11 Identities=55% Similarity=0.876 Sum_probs=8.8
Q ss_pred CccccCCcccc
Q 025523 238 DPIIDQGPAKR 248 (251)
Q Consensus 238 ~~~~~~~~~~~ 248 (251)
|.+||.||.=|
T Consensus 36 e~~iD~gpEWR 46 (50)
T d1pfta_ 36 ENIIDMGPEWR 46 (50)
T ss_dssp CCCCCCCSSSS
T ss_pred cccccCCCccc
Confidence 67888888766
No 6
>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.22 E-value=1.1e+02 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.0
Q ss_pred cchHHHhhHHHHHHHH
Q 025523 180 IDLKEVKRVDQILASL 195 (251)
Q Consensus 180 ~~~fQ~~RvD~lL~~L 195 (251)
.+.+++.||||++..+
T Consensus 4 k~~~e~a~iD~~~~~~ 19 (132)
T d2a2ra1 4 KDQQEAALVDMVNDGV 19 (132)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4678999999998743
No 7
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=7.73 E-value=1.9e+02 Score=19.35 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=23.9
Q ss_pred hhhhhhcCCceeEEeeecCCceEEEEEeeecC
Q 025523 75 ISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDG 106 (251)
Q Consensus 75 ~~~L~~m~GiEY~l~~~~ep~LfVIrKQ~R~s 106 (251)
++.|+.+.|++++-..+...|.-+|.-....+
T Consensus 29 E~~l~~v~gi~~i~S~S~~~G~~~i~v~f~~~ 60 (97)
T d1iwga1 29 EQNMNGIDNLMYMSSNSDSTGTVQITLTFESG 60 (97)
T ss_dssp HHHCCCCSSCCEEEEEEETTTEEEEEEECCTT
T ss_pred HHHHhCCCCcEEEEEEEccCCcEEEEEEEeCC
Confidence 46789999999998887655777666666443
No 8
>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.34 E-value=1.7e+02 Score=19.88 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=25.0
Q ss_pred eEEeeecCCceEEEEEeeecCCC--ccccceeEEEEcCeEeeCCchhHHHH
Q 025523 86 YMLSEVMEPHLFVIRKQKRDGPE--KVTPMLTYYVLDGSIYQAPQLCNVFS 134 (251)
Q Consensus 86 Y~l~~~~ep~LfVIrKQ~R~s~~--~v~pLa~YYIi~G~IYQAPsl~sVl~ 134 (251)
|.|-.+..++-|||.=....... .+..-..+|++++..| ++|.++|.
T Consensus 34 FLVR~S~~~~~yvLSv~~~~~v~H~~I~~~~~~~~~~~~~F--~sl~~LV~ 82 (105)
T d2fcia1 34 FLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEF--DSLVDLIS 82 (105)
T ss_dssp EEEEECSSTTCEEEEEEETTEECCCEEBCCSSCEECSSSEE--STTHHHHH
T ss_pred EEEEecCCCCCEEEEEEeccccEEEEEEecCCeEecCCccc--CCHHHHHH
Confidence 56655555666665543321111 1222355788888765 56666654
No 9
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=1.6e+02 Score=21.30 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH------HHHHhhhcCCcCCC
Q 025523 126 APQLCNVFSARIGRALHYIQKAFTT------AASKLEKIGYVDAE 164 (251)
Q Consensus 126 APsl~sVl~sRl~sa~~~L~kaf~~------~~s~~~~~GY~~~~ 164 (251)
.+.....+..|++..+.....+|.. +.+.+.+.||...+
T Consensus 96 ~~~~~~~Vk~kil~li~~Wa~~f~~~~~~~~~y~~Lk~~Gvi~~~ 140 (143)
T d1mhqa_ 96 GSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLKKQGIIKQD 140 (143)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHCCCCCCC
Confidence 3566778899999999988888764 34445689997543
No 10
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.97 E-value=1e+02 Score=23.40 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=22.8
Q ss_pred cceeEEEEcCeEeeCCchhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcCCcCC
Q 025523 112 PMLTYYVLDGSIYQAPQLCNVFSARIGRALHY-------IQKAFTTAASKLEKIGYVDA 163 (251)
Q Consensus 112 pLa~YYIi~G~IYQAPsl~sVl~sRl~sa~~~-------L~kaf~~~~s~~~~~GY~~~ 163 (251)
....+=|+||+ .|=|++-+.. ++.|+.+|. ..||.+.
T Consensus 16 I~~i~GIlNGT-----------~NyILt~m~~~~~~g~~f~~al~~Aq----~lGyaE~ 59 (190)
T d1ebfa2 16 VEKIEGIFSGT-----------LSYIFNEFSTSQANDVKFSDVVKVAK----KLGYTEP 59 (190)
T ss_dssp EEEEEEECCHH-----------HHHHHHHHSCSSCCCCCHHHHHHHHH----HHTCSCS
T ss_pred EEEEEEEEecc-----------HHHHHHHhhhcccCCccHHHHHHHHH----hcCccCC
Confidence 44666788998 6666666643 555555544 4688654
Done!