BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025525
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z8K|A Chain A, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|1Z8K|B Chain B, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|1Z8K|C Chain C, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|2Q4I|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
pdb|2Q4I|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
pdb|2Q4I|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
Length = 193
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/186 (67%), Positives = 151/186 (81%), Gaps = 1/186 (0%)
Query: 67 SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQK 126
SQ + ++PRP+KVQEL VYEINE DR SP L+ + LGDLVPF+NKLYTGDL+K
Sbjct: 8 SQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKK 67
Query: 127 RLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIF 186
R+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIF
Sbjct: 68 RVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIF 127
Query: 187 EGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAA 245
EG YGQVKLQQLV+P KLFYTFYLKG+ DLP L G PV P +EP+P AKA EP
Sbjct: 128 EGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGV 187
Query: 246 IDNFTN 251
I N+TN
Sbjct: 188 ISNYTN 193
>pdb|1ZVC|A Chain A, X-Ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25760
Length = 189
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 71 SSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGI 130
++++PRP+KVQEL VYEIN+ DR SP L+ + LGDLVPF+NKLYTGDL+KR+GI
Sbjct: 8 NTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGI 67
Query: 131 TAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVY 190
TAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG Y
Sbjct: 68 TAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAY 127
Query: 191 GQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
GQVKLQQLV+P KLFYTFYLKG+ DLP L+G PV P VEP+P AKA +P + NF
Sbjct: 128 GQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNF 187
Query: 250 TN 251
TN
Sbjct: 188 TN 189
>pdb|2GIN|A Chain A, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|B Chain B, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|C Chain C, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|D Chain D, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|E Chain E, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|F Chain F, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
Length = 188
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 145/176 (82%), Gaps = 1/176 (0%)
Query: 77 PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
P+KVQEL VYEINE DR SP L+ + + LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13 PSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
+IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
QLV+P KLFYTFYLKG+ DLP L G PV P +EP+P AKA EP I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|2DIO|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
Length = 188
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 77 PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
P+KVQEL VYEINE DR SP L+ + LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13 PSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
+IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
QLV+P KLFYTFYLKG+ DLP L G PV P +EP+P AKA EP I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|2BRJ|A Chain A, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|B Chain B, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|C Chain C, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
Length = 188
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 77 PTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCI 136
P+KVQEL VYEINE DR SP L+ + LGDLVPF+NKLYTGDL+KR+GITAGLC+
Sbjct: 13 PSKVQELSVYEINELDRHSPKILKNAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 137 LIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQ 196
+IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQ
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 197 QLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
QLV+P KLFYTFYLKG+ DLP L G PV P +EP+P AKA EP I N+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|4H6B|A Chain A, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|D Chain D, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|C Chain C, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|B Chain B, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|E Chain E, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|F Chain F, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|G Chain G, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|H Chain H, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|I Chain I, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|J Chain J, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|K Chain K, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|L Chain L, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6C|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|G Chain G, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|H Chain H, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|I Chain I, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|J Chain J, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|K Chain K, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|L Chain L, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
Length = 195
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/181 (66%), Positives = 134/181 (74%), Gaps = 7/181 (3%)
Query: 77 PTKVQELHVYEINERDRGSPAYLRLSQKP-------VNSLGDLVPFSNKLYTGDLQKRLG 129
P VQEL VYEINERDRGSP +L K VNSLGDLVPFSNK+Y G L+ RLG
Sbjct: 14 PGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLG 73
Query: 130 ITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGV 189
ITAGLC LI + +K GDRYEA+YSFYFGDYGHI+VQGPY+TYED+YLA+TGGSGIF G
Sbjct: 74 ITAGLCTLISHSDQKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGC 133
Query: 190 YGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNF 249
YGQ KL Q++FPFKLFYTFYL+GIK LPE L V P P V P+ AK C P NF
Sbjct: 134 YGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSVAPADEAKQCLPNHVAPNF 193
Query: 250 T 250
T
Sbjct: 194 T 194
>pdb|4H69|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H6A|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
Length = 194
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/178 (66%), Positives = 130/178 (73%), Gaps = 6/178 (3%)
Query: 80 VQELHVYEINERDRGSPAYLRLSQKP------VNSLGDLVPFSNKLYTGDLQKRLGITAG 133
VQEL VYEINERDRGSP L K NSLGDLVPFSNK+Y G LQ+RLGITAG
Sbjct: 17 VQELSVYEINERDRGSPVILPFGGKKDENGAHANSLGDLVPFSNKVYDGSLQRRLGITAG 76
Query: 134 LCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQV 193
+C LI + EKKGDRYEA YSFYFGDYGHI+VQGPY+TYEDT L VTGG+GIF G +G
Sbjct: 77 ICTLISHNAEKKGDRYEAQYSFYFGDYGHISVQGPYITYEDTELVVTGGTGIFAGCHGVA 136
Query: 194 KLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
KL Q++FP KLFYTFYL+GIK LPE L V P P EPS AK C P + NFTN
Sbjct: 137 KLHQIIFPVKLFYTFYLQGIKKLPEELCASVVPPSPSAEPSEQAKKCHPSSVAPNFTN 194
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 46 PHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAY-LRLSQK 104
P L A++ + + ++ F + Q N DD K H +EI +D S + + +++
Sbjct: 478 PRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK----HAFEIILKDENSVIFSAKSAEE 533
Query: 105 PVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSF 155
N + L+ Y L++ L +T +L E K E+ +Y F
Sbjct: 534 KNNWMAALISLQ---YRSTLERMLDVT----MLQEEKEEQMRLPSADVYRF 577
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 46 PHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAY-LRLSQK 104
P L A++ + + ++ F + Q N DD K H +EI +D S + + +++
Sbjct: 281 PRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK----HAFEIILKDENSVIFSAKSAEE 336
Query: 105 PVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSF 155
N + L+ Y L++ L +T +L E K E+ +Y F
Sbjct: 337 KNNWMAALISLQ---YRSTLERMLDVT----MLQEEKEEQMRLPSADVYRF 380
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 27.7 bits (60), Expect = 5.6, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 46 PHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAY-LRLSQK 104
P L A++ + + ++ F + Q N DD K H +EI +D S + + +++
Sbjct: 281 PRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK----HAFEIILKDENSVIFSAKSAEE 336
Query: 105 PVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSF 155
N + L+ Y L++ L +T +L E K E+ +Y F
Sbjct: 337 KNNWMAALISLQ---YRSTLERMLDVT----MLQEEKEEQMRLPSADVYRF 380
>pdb|2O6A|A Chain A, Crystal Structure Of The Haemophilus Influenzae E57a
Mutant Fbpa
Length = 309
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI 213
+ Y G + A ++T + VT SG E + GQ+K + P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTAQTATF 62
Query: 214 KDLPEVLLGKPV 225
DL E L P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|3KN8|A Chain A, Crystal Structure Of Haemophilus Influenzae Y196a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI 213
+ Y G + A ++T + VT SG E + GQ+K + P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 214 KDLPEVLLGKPV 225
DL E L P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|3KN7|A Chain A, Crystal Structure Of Haemophilus Influenzae Y195a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI 213
+ Y G + A ++T + VT SG E + GQ+K + P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 214 KDLPEVLLGKPV 225
DL E L P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|2O68|A Chain A, Crystal Structure Of Haemophilus Influenzae Q58l Mutant
Fbpa
Length = 309
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI 213
+ Y G + A ++T + VT SG E + GQ+K + P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTELTATF 62
Query: 214 KDLPEVLLGKPV 225
DL E L P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|1D9V|A Chain A, Haemophilus Influenzae Ferric-Binding Protein Apo Form
pdb|1MRP|A Chain A, Ferric-Binding Protein From Haemophilus Influenzae
pdb|3OD7|A Chain A, Haemophilus Influenzae Ferric Binding Protein A -Iron
Loaded
pdb|3ODB|A Chain A, Haemophilus Influenzae Ferric Binding Protein A -Iron
Loaded -Open Conformation
Length = 309
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI 213
+ Y G + A ++T + VT SG E + GQ+K + P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 214 KDLPEVLLGKPV 225
DL E L P+
Sbjct: 63 ADLSEAGLLAPI 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,798,819
Number of Sequences: 62578
Number of extensions: 345457
Number of successful extensions: 665
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 66
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)