BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025525
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana
GN=AOC4 PE=2 SV=1
Length = 254
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/217 (63%), Positives = 165/217 (76%), Gaps = 9/217 (4%)
Query: 37 NNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSP 96
N+P L T+ ++T F C S +N D RPTK+QEL+VYE NE DR SP
Sbjct: 45 NSPGLSTRARSTTSSTGGFFRT-----ICSSSSN--DYSRPTKIQELNVYEFNEGDRNSP 97
Query: 97 AYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSF 155
A L+L +KP LGDLVPF+NKLYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSF
Sbjct: 98 AVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSF 157
Query: 156 YFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-K 214
YFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+
Sbjct: 158 YFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAA 217
Query: 215 DLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251
DLP L GK V+P V+P+ A+A +PGA I NFTN
Sbjct: 218 DLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254
>sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana
GN=AOC2 PE=1 SV=1
Length = 253
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/261 (54%), Positives = 181/261 (69%), Gaps = 18/261 (6%)
Query: 1 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPK 60
MA S+ +L++IS ++ + SS+L K I+ + +F+ P
Sbjct: 1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGIS-------SNGSDFSYPS 53
Query: 61 RSFTCR---------SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGD 111
SFT + SQ + ++PRP+KVQEL VYEINE DR SP L+ + + LGD
Sbjct: 54 -SFTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGD 112
Query: 112 LVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLT 171
LVPF+NKLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLT
Sbjct: 113 LVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLT 172
Query: 172 YEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPG 230
YED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+ DLP L G PV P
Sbjct: 173 YEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKD 232
Query: 231 VEPSPAAKACEPGAAIDNFTN 251
+EP+P AKA EP I N+TN
Sbjct: 233 IEPAPEAKALEPSGVISNYTN 253
>sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana
GN=AOC3 PE=2 SV=1
Length = 258
Score = 267 bits (682), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 145/261 (55%), Positives = 181/261 (69%), Gaps = 13/261 (4%)
Query: 1 MACSSAALRTISSASVKLANSTSPTKSS--SILVPFK--LNNPFLITQCPHLQAATSC-- 54
MA SSAA+ ++ S S+ N+ S S S L+ F N + + P + +
Sbjct: 1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTT 59
Query: 55 --NFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGD 111
N V + F + +++ RP+K+QEL+VYE+NE DR SPA L+L +KP LGD
Sbjct: 60 SKNLNVTRAFF--WNWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117
Query: 112 LVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLT 171
LVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLT
Sbjct: 118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177
Query: 172 YEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPG 230
YEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+ DLP L G V P
Sbjct: 178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237
Query: 231 VEPSPAAKACEPGAAIDNFTN 251
V+P+P AKA EP I NFTN
Sbjct: 238 VKPAPEAKAMEPSGVISNFTN 258
>sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana
GN=AOC1 PE=1 SV=1
Length = 254
Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 182/256 (71%), Gaps = 7/256 (2%)
Query: 1 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPK 60
MA S+ +L++IS ++ + + SS+L K F I+ +++ +FT PK
Sbjct: 1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSN-GPGSSSPTSFT-PK 58
Query: 61 RSFT----CRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFS 116
+ T ++++PRP+KVQEL VYEIN+ DR SP L+ + LGDLVPF+
Sbjct: 59 KKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFT 118
Query: 117 NKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTY 176
NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++
Sbjct: 119 NKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSF 178
Query: 177 LAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSP 235
LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+ DLP L+G PV P VEP+P
Sbjct: 179 LAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAP 238
Query: 236 AAKACEPGAAIDNFTN 251
AKA +P + NFTN
Sbjct: 239 EAKALKPSGVVSNFTN 254
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 55 NFTVPKRSFTC-RSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLV 113
F VP+RS TC RS S +D T +I+ +D +P+Y L +LV
Sbjct: 141 RFKVPRRSQTCSRSMDYSMEDSVSTISGRKPSVQISNKDHETPSYEELQALDDLEFANLV 200
Query: 114 PFSNKLY 120
F NK++
Sbjct: 201 IFGNKVF 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,099,821
Number of Sequences: 539616
Number of extensions: 4339409
Number of successful extensions: 8840
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8829
Number of HSP's gapped (non-prelim): 12
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)