Query 025525
Match_columns 251
No_of_seqs 58 out of 60
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 06:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02343 allene oxide cyclase 100.0 9E-114 2E-118 751.9 21.3 214 31-251 15-229 (229)
2 PF06351 Allene_ox_cyc: Allene 100.0 3E-109 7E-114 702.2 13.6 176 74-249 1-176 (176)
3 PF03018 Dirigent: Dirigent-li 98.7 2.9E-07 6.3E-12 75.4 12.6 115 80-198 2-126 (144)
4 cd06186 NOX_Duox_like_FAD_NADP 62.5 6.9 0.00015 31.7 2.5 13 174-186 107-119 (210)
5 COG0543 UbiB 2-polyprenylpheno 52.7 10 0.00022 33.1 2.2 23 163-185 91-119 (252)
6 cd00322 FNR_like Ferredoxin re 48.1 17 0.00037 29.1 2.6 25 162-186 80-110 (223)
7 PRK13838 conjugal transfer pil 46.8 62 0.0013 27.7 5.9 45 106-151 50-102 (176)
8 PF08030 NAD_binding_6: Ferric 46.4 10 0.00022 29.3 1.0 12 174-185 2-13 (156)
9 PRK05802 hypothetical protein; 46.3 16 0.00034 33.3 2.4 26 161-186 149-185 (320)
10 cd06187 O2ase_reductase_like T 44.0 20 0.00043 29.2 2.4 12 174-185 99-110 (224)
11 cd06196 FNR_like_1 Ferredoxin 41.1 25 0.00055 28.7 2.6 12 174-185 100-111 (218)
12 cd06184 flavohem_like_fad_nad_ 40.8 22 0.00048 29.7 2.3 25 162-186 96-126 (247)
13 cd06183 cyt_b5_reduct_like Cyt 40.0 22 0.00047 29.0 2.1 12 174-185 105-116 (234)
14 cd06191 FNR_iron_sulfur_bindin 40.0 25 0.00054 29.1 2.4 12 174-185 103-114 (231)
15 PRK13884 conjugal transfer pep 40.0 68 0.0015 27.4 5.1 58 107-172 51-116 (178)
16 cd06197 FNR_like_2 FAD/NAD(P) 40.0 24 0.00052 29.7 2.4 13 173-185 125-137 (220)
17 PRK00054 dihydroorotate dehydr 38.9 26 0.00056 29.9 2.5 24 162-185 85-114 (250)
18 PTZ00274 cytochrome b5 reducta 37.6 26 0.00057 32.2 2.4 25 161-185 141-171 (325)
19 PF13363 BetaGal_dom3: Beta-ga 37.5 24 0.00052 27.4 1.8 23 161-183 16-42 (79)
20 cd06190 T4MO_e_transfer_like T 36.3 29 0.00062 28.6 2.3 23 163-185 81-109 (232)
21 KOG0534 NADH-cytochrome b-5 re 35.6 31 0.00066 32.2 2.6 25 161-185 138-168 (286)
22 cd06220 DHOD_e_trans_like2 FAD 34.3 35 0.00077 28.6 2.5 13 173-185 88-100 (233)
23 PRK08564 5'-methylthioadenosin 33.8 36 0.00077 30.9 2.6 40 175-214 8-52 (267)
24 cd06198 FNR_like_3 NAD(P) bind 33.1 37 0.00081 27.7 2.4 14 173-186 95-108 (216)
25 cd06209 BenDO_FAD_NAD Benzoate 31.5 39 0.00085 27.8 2.3 13 174-186 103-115 (228)
26 smart00797 AHS2 Allophanate hy 31.5 45 0.00099 30.7 2.9 22 163-184 33-55 (280)
27 PRK08345 cytochrome-c3 hydroge 31.3 41 0.00089 29.7 2.5 25 162-186 90-121 (289)
28 cd06217 FNR_iron_sulfur_bindin 31.1 44 0.00096 27.4 2.6 12 174-185 108-119 (235)
29 PF14498 Glyco_hyd_65N_2: Glyc 31.0 3.4E+02 0.0073 23.3 8.0 60 124-184 170-232 (236)
30 PRK08051 fre FMN reductase; Va 29.4 50 0.0011 27.7 2.6 12 174-185 103-114 (232)
31 cd06213 oxygenase_e_transfer_s 29.1 48 0.001 27.4 2.4 12 174-185 101-112 (227)
32 PLN02292 ferric-chelate reduct 28.8 42 0.00091 34.8 2.5 23 163-185 415-443 (702)
33 cd06215 FNR_iron_sulfur_bindin 28.3 51 0.0011 27.0 2.4 14 173-186 103-116 (231)
34 cd06216 FNR_iron_sulfur_bindin 28.3 45 0.00099 27.8 2.2 13 174-186 123-135 (243)
35 PRK07609 CDP-6-deoxy-delta-3,4 27.9 50 0.0011 29.4 2.5 25 162-186 187-217 (339)
36 TIGR02911 sulfite_red_B sulfit 27.8 53 0.0011 28.6 2.6 24 162-185 81-111 (261)
37 cd06212 monooxygenase_like The 27.7 50 0.0011 27.3 2.3 13 174-186 104-116 (232)
38 cd06218 DHOD_e_trans FAD/NAD b 27.6 50 0.0011 28.2 2.4 13 174-186 99-111 (246)
39 PLN02844 oxidoreductase/ferric 27.1 46 0.001 34.6 2.4 23 163-185 407-435 (722)
40 cd06194 FNR_N-term_Iron_sulfur 27.0 58 0.0013 26.7 2.6 24 162-185 79-109 (222)
41 TIGR02771 TraF_Ti conjugative 26.2 2E+02 0.0043 24.5 5.7 57 108-172 48-112 (171)
42 PRK07823 5'-methylthioadenosin 26.0 54 0.0012 30.0 2.4 39 175-214 6-49 (264)
43 PF08257 Sulfakinin: Sulfakini 26.0 24 0.00053 18.3 0.1 8 157-164 1-8 (9)
44 cd06192 DHOD_e_trans_like FAD/ 25.7 60 0.0013 27.3 2.5 24 162-185 80-109 (243)
45 PLN02631 ferric-chelate reduct 25.7 58 0.0013 33.8 2.8 24 162-185 395-424 (699)
46 cd06221 sulfite_reductase_like 25.1 61 0.0013 27.8 2.5 25 162-186 80-111 (253)
47 cd06189 flavin_oxioreductase N 24.7 58 0.0013 26.9 2.2 13 174-186 99-111 (224)
48 KOG1034 Transcriptional repres 24.7 4.9E+02 0.011 26.0 8.6 72 133-227 76-148 (385)
49 cd06188 NADH_quinone_reductase 24.3 65 0.0014 28.0 2.5 12 174-185 151-162 (283)
50 TIGR01697 PNPH-PUNA-XAPA inosi 23.7 50 0.0011 29.0 1.7 36 177-214 2-52 (248)
51 cd06211 phenol_2-monooxygenase 23.1 68 0.0015 26.8 2.3 12 174-185 110-121 (238)
52 PLN03116 ferredoxin--NADP+ red 23.1 64 0.0014 28.8 2.3 12 174-185 157-168 (307)
53 cd06210 MMO_FAD_NAD_binding Me 22.6 69 0.0015 26.5 2.2 12 174-185 109-120 (236)
54 PRK08221 anaerobic sulfite red 21.9 75 0.0016 27.7 2.4 12 174-185 102-113 (263)
55 cd06193 siderophore_interactin 21.8 76 0.0016 26.8 2.4 25 162-186 104-133 (235)
56 PTZ00319 NADH-cytochrome B5 re 21.7 74 0.0016 28.5 2.4 11 175-185 168-178 (300)
57 cd06219 DHOD_e_trans_like1 FAD 21.5 76 0.0016 27.1 2.3 22 164-185 83-109 (248)
58 cd06195 FNR1 Ferredoxin-NADP+ 21.5 72 0.0016 26.6 2.1 12 174-185 102-113 (241)
59 PRK06171 sorbitol-6-phosphate 21.4 58 0.0013 26.9 1.6 20 166-185 1-20 (266)
60 PF03599 CdhD: CO dehydrogenas 21.3 54 0.0012 32.1 1.5 29 73-102 260-288 (386)
61 TIGR02160 PA_CoA_Oxy5 phenylac 20.7 71 0.0015 28.6 2.1 12 174-185 110-121 (352)
No 1
>PLN02343 allene oxide cyclase
Probab=100.00 E-value=8.8e-114 Score=751.88 Aligned_cols=214 Identities=71% Similarity=1.188 Sum_probs=199.5
Q ss_pred eeccccCCCccccccccccccccccCCCCcceEEEeecCCCCCCCCCceeEEEEEEEeecccCCCcceEeecCCcc-ccc
Q 025525 31 LVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPV-NSL 109 (251)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~q~~~~~~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~-nsl 109 (251)
.+.|+.+++..++ +.....+....+++|+|++|++ ++++|+|||||+|||||||||+||||||||+|++ |+|
T Consensus 15 ~~~~~~~~p~~s~-----~~~~~~s~~~s~~~~~~~~~~~--~~~~p~kvQel~VYEiNErDR~SPa~L~ls~k~~~~sL 87 (229)
T PLN02343 15 NLGISSNGPDFSS-----RSSFTTSKNLTVTRALFSNKAN--ENPRPTKVQELSVYEINERDRGSPAFLKLSKKSVENAL 87 (229)
T ss_pred cccccccCccccc-----cccccccccccceeeeeccccc--CCCCCceeEEEEEEEeccccCCCcceEEcccCcccccc
Confidence 3456666665554 1111233445688999999997 8899999999999999999999999999999999 999
Q ss_pred cccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEEEEEeecCeeEEEeCccccccccEEEEeccceeeeee
Q 025525 110 GDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGV 189 (251)
Q Consensus 110 GDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiySfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa 189 (251)
||||||+||||+|||+|||||||||||+|||+||||||||||||||||||||||+|||||+||||||||||||+||||||
T Consensus 88 GDlVPFsNKlY~g~L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpyltyeDt~LaiTGGsGiFega 167 (229)
T PLN02343 88 GDLVPFTNKLYTGDLKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGA 167 (229)
T ss_pred cceeccccccccchhhhhhcccceeEEEEEeccccCCceeEEEEEEEecCcceeEEeccccccccceEEeecCcceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCCCCCCCCCCCCcchhccCCCccccCCCC
Q 025525 190 YGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 251 (251)
Q Consensus 190 ~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~v~Ps~~vep~p~aka~~p~a~~~nft~ 251 (251)
||||||||||||||||||||||||||||+||+++||+|||+|||+|+|||||||++|+||||
T Consensus 168 ~GqvkL~qivfPfKlfYTFyLkGi~dLP~eL~~~~v~Ps~~Vep~p~Aka~~p~~~~~nfT~ 229 (229)
T PLN02343 168 YGQVKLHQIVFPFKLFYTFYLKGIPDLPEELTGTPVPPSPDVEPAPEAKACEPSSVIPNFTN 229 (229)
T ss_pred eeEEEEeeeeeeeeeEEEEEecccccchHHHhCCCCCCCCCCCcChhHhhcCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=100.00 E-value=3.3e-109 Score=702.23 Aligned_cols=176 Identities=88% Similarity=1.436 Sum_probs=137.9
Q ss_pred CCCCceeEEEEEEEeecccCCCcceEeecCCccccccccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEE
Q 025525 74 DPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIY 153 (251)
Q Consensus 74 ~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiy 153 (251)
++||+|||||+|||||||||+||||||||||++|+|||||||+||||+|+||||||||||||++|||+|||+||||||+|
T Consensus 1 ~~~p~kvqel~vyeiNErdR~SPa~L~ls~k~~nslGDlvpFsNklY~g~l~~rlGitaG~Cvliq~~p~k~GdryEaiy 80 (176)
T PF06351_consen 1 SSRPTKVQELSVYEINERDRGSPAYLRLSQKSVNSLGDLVPFSNKLYDGDLQKRLGITAGICVLIQHVPEKKGDRYEAIY 80 (176)
T ss_dssp -------EEEEEEEE--S-S--S--B--SSSSSS-TT-EEEEEEEEEETTSS-EEEEEEEEEEEEEEECCCTEEEEEEEE
T ss_pred CCCccceEEEEEEEEcccccCCCcEEEcccccchhcccccccccccccchhhhhhcccceEEEEEEeccccCCceEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCCCCCCCCCCC
Q 025525 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKPVDPHPGVEP 233 (251)
Q Consensus 154 SfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~v~Ps~~vep 233 (251)
||||||||||||||||+|||||||||||||||||||||||||||||||||||||||||||||||+||+++||+|||+|||
T Consensus 81 SfyfGdyGhISvqGpy~t~eDtyLAVTGGtGiF~g~~GqVkL~qivfPfKlfYTFylkGi~dLP~el~~~~v~Ps~~vep 160 (176)
T PF06351_consen 81 SFYFGDYGHISVQGPYLTYEDTYLAVTGGTGIFEGVYGQVKLHQIVFPFKLFYTFYLKGIPDLPEELLGKPVEPSPAVEP 160 (176)
T ss_dssp EEE-GGGEEEEEEEEEETTS-EEEEEEEEEETTTT-EEEEEEEEEETTTEEEEEEEEES-S---GGGHS-----STT---
T ss_pred EEEecccceEEEecccccccceeEEEeccCceeecceEEEEEEEeecceEEEEEEEecccccccHHHhCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccCCCccccCC
Q 025525 234 SPAAKACEPGAAIDNF 249 (251)
Q Consensus 234 ~p~aka~~p~a~~~nf 249 (251)
+|+||||||||+++||
T Consensus 161 ~p~Aka~~p~a~~~nf 176 (176)
T PF06351_consen 161 SPAAKACEPHAVIPNF 176 (176)
T ss_dssp -HHHHCT-GGGB-TT-
T ss_pred ChHHhhcCCcccccCC
Confidence 9999999999999998
No 3
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=98.72 E-value=2.9e-07 Score=75.37 Aligned_cols=115 Identities=25% Similarity=0.379 Sum_probs=88.5
Q ss_pred eEEEEEEEeecccCCCcceEeecCCcc---ccccccccccCccccccc--cceecceeeeEEEEeeccCCCCCeEEEEEE
Q 025525 80 VQELHVYEINERDRGSPAYLRLSQKPV---NSLGDLVPFSNKLYTGDL--QKRLGITAGLCILIENKPEKKGDRYEAIYS 154 (251)
Q Consensus 80 vqel~VyEiNErDr~SPa~L~ls~k~~---nslGDlVpFsNkLY~g~l--~~RlGitaG~Cvliq~~pek~GdryEaiyS 154 (251)
+-.|++|-.+.+....|--..+-.-.. +..|+++-|+|+|++|-- -+.||--+|+.+.-. +.|..+-..++
T Consensus 2 ~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s----~~~~~~~~~~~ 77 (144)
T PF03018_consen 2 ETHLHFYMHDIVSGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSAS----LDGSSWFMSFT 77 (144)
T ss_pred ceEEEEEeeecCCCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeec----ccCccEEEEEE
Confidence 345666666555543343344433222 278999999999999854 789999999999853 45778888899
Q ss_pred EEeecC---e-eEEEeCccc-cccccEEEEeccceeeeeeeeEEEEeee
Q 025525 155 FYFGDY---G-HIAVQGPYL-TYEDTYLAVTGGSGIFEGVYGQVKLQQL 198 (251)
Q Consensus 155 fyfGdy---G-hIsvqGpyl-t~eDtyLAVTGGtGifeGa~GqVkL~qi 198 (251)
+.|-+. | +|+|+|.+- .-+..-+||+||||-|+.|+|-+++..+
T Consensus 78 ~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~ 126 (144)
T PF03018_consen 78 LVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV 126 (144)
T ss_pred EEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE
Confidence 999872 6 899999985 4466799999999999999999999887
No 4
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=62.47 E-value=6.9 Score=31.66 Aligned_cols=13 Identities=62% Similarity=0.889 Sum_probs=11.2
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+..+-|.||+||=
T Consensus 107 ~~~vliagG~GIt 119 (210)
T cd06186 107 DNVLLVAGGSGIT 119 (210)
T ss_pred CeEEEEeccccHh
Confidence 5789999999983
No 5
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=52.69 E-value=10 Score=33.08 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEeCcccccccc------EEEEecccee
Q 025525 163 IAVQGPYLTYEDT------YLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt~eDt------yLAVTGGtGi 185 (251)
|.+.|||=+.-+- .|.|-||+|+
T Consensus 91 i~v~GP~G~~~~~~~~~~~vlliagGtG~ 119 (252)
T COG0543 91 IRVRGPLGNGFLREKIGKPVLLIAGGTGI 119 (252)
T ss_pred EEEEcCCCCCccccccCCcEEEEecccCH
Confidence 8999999876332 8999999998
No 6
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=48.12 E-value=17 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=16.8
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.+.|||=.+ .+.++.|.||+||=
T Consensus 80 ~v~i~gP~G~~~~~~~~~~~~v~ia~G~Gia 110 (223)
T cd00322 80 EVEVSGPGGDFFLPLEESGPVVLIAGGIGIT 110 (223)
T ss_pred EEEEECCCcccccCcccCCcEEEEecCCchh
Confidence 35555555443 35789999999983
No 7
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=46.79 E-value=62 Score=27.71 Aligned_cols=45 Identities=29% Similarity=0.390 Sum_probs=29.2
Q ss_pred cccccccccccCc---cccccccceecceeeeE-----EEEeeccCCCCCeEEE
Q 025525 106 VNSLGDLVPFSNK---LYTGDLQKRLGITAGLC-----ILIENKPEKKGDRYEA 151 (251)
Q Consensus 106 ~nslGDlVpFsNk---LY~g~l~~RlGitaG~C-----vliq~~pek~GdryEa 151 (251)
.-..||+|-|.-+ .++.+. +|--+..|.| .+|+.+-...||+.|.
T Consensus 50 ~~~rGDiVvf~~P~~~~~~~a~-~r~yl~~g~~p~~~~~~iKRViglpGD~V~i 102 (176)
T PRK13838 50 PVAVGDLVFICPPETAAFREAR-ERGYLRRGLCPGGFAPLIKTVAALAGQRVEI 102 (176)
T ss_pred CCCCCcEEEEECCchhhhhhhh-hcccccccccccCCCceEEEEEEeCCcEEEE
Confidence 3467999988643 233332 2334456666 5788888888888874
No 8
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=46.38 E-value=10 Score=29.29 Aligned_cols=12 Identities=58% Similarity=0.963 Sum_probs=10.5
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
|+.+-|.||+||
T Consensus 2 ~~vvlvAGG~GI 13 (156)
T PF08030_consen 2 DNVVLVAGGSGI 13 (156)
T ss_dssp SEEEEEEEGGGH
T ss_pred CEEEEEecCcCH
Confidence 678899999997
No 9
>PRK05802 hypothetical protein; Provisional
Probab=46.29 E-value=16 Score=33.35 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=19.3
Q ss_pred eeEEEeCcc----ccc-------cccEEEEeccceee
Q 025525 161 GHIAVQGPY----LTY-------EDTYLAVTGGSGIF 186 (251)
Q Consensus 161 GhIsvqGpy----lt~-------eDtyLAVTGGtGif 186 (251)
..|.|.||| +.. ....|.|.||+||-
T Consensus 149 d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIa 185 (320)
T PRK05802 149 DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQA 185 (320)
T ss_pred CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHH
Confidence 468999997 321 23689999999983
No 10
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=44.01 E-value=20 Score=29.23 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 99 ~~~lliagG~GI 110 (224)
T cd06187 99 RPVLCIAGGTGL 110 (224)
T ss_pred CCEEEEecCcCH
Confidence 568899999998
No 11
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=41.14 E-value=25 Score=28.67 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.2
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+..+.|.||+||
T Consensus 100 ~~~vlia~GtGi 111 (218)
T cd06196 100 GPGVFIAGGAGI 111 (218)
T ss_pred CceEEEecCCCc
Confidence 467899999997
No 12
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=40.84 E-value=22 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=17.8
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.+.|.|||=.+ .+.++.|.|||||=
T Consensus 96 ~v~i~gP~G~~~~~~~~~~~llliagGtGia 126 (247)
T cd06184 96 VLEVSAPAGDFVLDEASDRPLVLISAGVGIT 126 (247)
T ss_pred EEEEEcCCCceECCCCCCCcEEEEeccccHh
Confidence 56677775432 24689999999973
No 13
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=40.03 E-value=22 Score=28.99 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.8
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 105 ~~~vliagGtGi 116 (234)
T cd06183 105 KHIGMIAGGTGI 116 (234)
T ss_pred cEEEEEcCCcch
Confidence 568999999999
No 14
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=40.02 E-value=25 Score=29.08 Aligned_cols=12 Identities=58% Similarity=0.955 Sum_probs=10.8
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.+|.|.||+||
T Consensus 103 ~~~lliagG~Gi 114 (231)
T cd06191 103 GRYLLVAAGSGI 114 (231)
T ss_pred CcEEEEecCccH
Confidence 578999999998
No 15
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=39.99 E-value=68 Score=27.37 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=40.9
Q ss_pred ccccccccccCcc---ccccccceecceeeeE-----EEEeeccCCCCCeEEEEEEEEeecCeeEEEeCccccc
Q 025525 107 NSLGDLVPFSNKL---YTGDLQKRLGITAGLC-----ILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTY 172 (251)
Q Consensus 107 nslGDlVpFsNkL---Y~g~l~~RlGitaG~C-----vliq~~pek~GdryEaiySfyfGdyGhIsvqGpylt~ 172 (251)
-..||+|-|..+- +.-+.+ |==+..|+| .+|+.+-...||+.|.. .+.+.|.|-.+.+
T Consensus 51 ~~~Gd~V~f~~p~~~~~~~a~~-rgyl~~g~~p~~~~~liKRVva~pGD~V~~~-------~~~l~VNG~~v~~ 116 (178)
T PRK13884 51 VEKGAYVLFCPPQRGVFDDAKE-RGYIGAGFCPGGYGYMMKRVLAAKGDAVSVT-------DDGVRVNGELLPL 116 (178)
T ss_pred CCCCCEEEEeCCchHHHHHHHh-CCccccCcCCCCCCceEEEEEeeCCcEEEEE-------CCEEEECCEEccc
Confidence 4579999997643 433322 322356787 89999999999999975 3568888877643
No 16
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=39.96 E-value=24 Score=29.72 Aligned_cols=13 Identities=38% Similarity=0.716 Sum_probs=11.2
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+..+.|.||+||
T Consensus 125 ~~~illIagG~GI 137 (220)
T cd06197 125 ERKMVWIAGGVGI 137 (220)
T ss_pred CceEEEEecccch
Confidence 3578999999998
No 17
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=38.94 E-value=26 Score=29.86 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=16.6
Q ss_pred eEEEeCcccc---c--c-ccEEEEecccee
Q 025525 162 HIAVQGPYLT---Y--E-DTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt---~--e-DtyLAVTGGtGi 185 (251)
.|.|.|||=+ . + +.++.|.||+||
T Consensus 85 ~v~i~gP~G~~f~l~~~~~~~vlIagG~Gi 114 (250)
T PRK00054 85 ELDIRGPLGNGFDLEEIGGKVLLVGGGIGV 114 (250)
T ss_pred EEEEEcccCCCCCCCCCCCeEEEEeccccH
Confidence 4666676622 2 2 468999999997
No 18
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=37.58 E-value=26 Score=32.23 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=18.1
Q ss_pred eeEEEeCccccc--c----ccEEEEecccee
Q 025525 161 GHIAVQGPYLTY--E----DTYLAVTGGSGI 185 (251)
Q Consensus 161 GhIsvqGpylt~--e----DtyLAVTGGtGi 185 (251)
-.|.|.||+.++ + +.++.|.|||||
T Consensus 141 d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGI 171 (325)
T PTZ00274 141 DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGF 171 (325)
T ss_pred CEEEEeCCeeecccCCCCCceEEEEeCCcch
Confidence 356777775543 1 458999999998
No 19
>PF13363 BetaGal_dom3: Beta-galactosidase, domain 3; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=37.51 E-value=24 Score=27.43 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=16.6
Q ss_pred eeEEEeCccc----cccccEEEEeccc
Q 025525 161 GHIAVQGPYL----TYEDTYLAVTGGS 183 (251)
Q Consensus 161 GhIsvqGpyl----t~eDtyLAVTGGt 183 (251)
.+|-|+|||| ..++.-|++||=.
T Consensus 16 ~~vlV~GpyLVRsAsv~g~tL~L~GD~ 42 (79)
T PF13363_consen 16 NSVLVKGPYLVRSASVSGSTLSLTGDF 42 (79)
T ss_dssp HB-EEE-SSEEEEEEEETTEEEEEEEB
T ss_pred CCEEEECCcEEEEEEEcCCEEEEEeec
Confidence 3899999999 4578889998843
No 20
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=36.32 E-value=29 Score=28.62 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=15.8
Q ss_pred EEEeCccccc------cccEEEEecccee
Q 025525 163 IAVQGPYLTY------EDTYLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt~------eDtyLAVTGGtGi 185 (251)
|.|.|||=++ .+.++.|.||+||
T Consensus 81 v~v~gP~G~~~~~~~~~~~illIagG~Gi 109 (232)
T cd06190 81 LELDGPYGLAYLRPDEDRDIVCIAGGSGL 109 (232)
T ss_pred EEEECCcccceecCCCCCcEEEEeeCcCH
Confidence 5556665432 3468999999997
No 21
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=35.65 E-value=31 Score=32.22 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=19.6
Q ss_pred eeEEEeCccccc--c----ccEEEEecccee
Q 025525 161 GHIAVQGPYLTY--E----DTYLAVTGGSGI 185 (251)
Q Consensus 161 GhIsvqGpylt~--e----DtyLAVTGGtGi 185 (251)
..|.+.||.-+| + ..+..|.|||||
T Consensus 138 d~ve~rGP~G~~~~~~~~~~~l~miAgGtGI 168 (286)
T KOG0534|consen 138 DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGI 168 (286)
T ss_pred CEEEEecCccceEecCCCcceEEEEecccch
Confidence 468889997655 2 568899999998
No 22
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=34.30 E-value=35 Score=28.65 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=11.4
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+..+.|.||+||
T Consensus 88 ~~~~vliAgGtGi 100 (233)
T cd06220 88 GGKVLLIGGGIGI 100 (233)
T ss_pred CCeEEEEecCcCh
Confidence 4688999999997
No 23
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=33.83 E-value=36 Score=30.95 Aligned_cols=40 Identities=20% Similarity=0.544 Sum_probs=25.2
Q ss_pred cEEEEeccceeee-eeeeEEEEeeeeeceeE----EEEEEecCCC
Q 025525 175 TYLAVTGGSGIFE-GVYGQVKLQQLVFPFKL----FYTFYLKGIK 214 (251)
Q Consensus 175 tyLAVTGGtGife-Ga~GqVkL~qivfPfkl----fYtFylkGi~ 214 (251)
.-+||.||||+|+ |.-...+-..+.-||.- +.--+|.|.+
T Consensus 8 ~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~p~~~l~~g~l~g~~ 52 (267)
T PRK08564 8 ASIGIIGGSGLYDPGIFENSKEVKVYTPYGEPSDNIIIGEIEGVE 52 (267)
T ss_pred ceEEEEecCCCCCCcccccceeeeEEcCCCCCccCEEEEEECCEE
Confidence 4689999999987 44334444556678862 3334566644
No 24
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=33.12 E-value=37 Score=27.75 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=11.6
Q ss_pred cccEEEEeccceee
Q 025525 173 EDTYLAVTGGSGIF 186 (251)
Q Consensus 173 eDtyLAVTGGtGif 186 (251)
.+.++-|.||+||=
T Consensus 95 ~~~~vlia~GtGia 108 (216)
T cd06198 95 RARQIWIAGGIGIT 108 (216)
T ss_pred CceEEEEccccCHH
Confidence 36789999999984
No 25
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=31.47 E-value=39 Score=27.85 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.1
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.++.|.||+||=
T Consensus 103 ~~~vlia~GtGIa 115 (228)
T cd06209 103 RPLLMLAGGTGLA 115 (228)
T ss_pred CeEEEEEcccCHh
Confidence 5689999999983
No 26
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=31.45 E-value=45 Score=30.65 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=15.2
Q ss_pred EEEeCccccc-cccEEEEeccce
Q 025525 163 IAVQGPYLTY-EDTYLAVTGGSG 184 (251)
Q Consensus 163 IsvqGpylt~-eDtyLAVTGGtG 184 (251)
|+..||-+.+ +|+++||||+-.
T Consensus 33 it~gg~~l~f~~~~~iAitGA~~ 55 (280)
T smart00797 33 ITLGGPTLRFTADAVIALTGADF 55 (280)
T ss_pred EecCcEEEEECCCcEEEEeCCCC
Confidence 3444666655 789999998643
No 27
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=31.34 E-value=41 Score=29.69 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=17.4
Q ss_pred eEEEeCcccc---cc----ccEEEEeccceee
Q 025525 162 HIAVQGPYLT---YE----DTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt---~e----DtyLAVTGGtGif 186 (251)
.|.|.|||=. .. +.++.|.||+||=
T Consensus 90 ~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIa 121 (289)
T PRK08345 90 IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMA 121 (289)
T ss_pred EEEEeCCCCCCCCcccccCceEEEEecccchh
Confidence 4677777632 21 3689999999984
No 28
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=31.15 E-value=44 Score=27.41 Aligned_cols=12 Identities=50% Similarity=0.908 Sum_probs=10.7
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 108 ~~~vliagG~Gi 119 (235)
T cd06217 108 DPVVLLAGGSGI 119 (235)
T ss_pred ceEEEEecCcCc
Confidence 568899999999
No 29
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=31.00 E-value=3.4e+02 Score=23.35 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=43.3
Q ss_pred ccceecceeeeEEEEeeccCCCCCeEEEEEEEEeecCeeEEEeCccccccc---cEEEEeccce
Q 025525 124 LQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYED---TYLAVTGGSG 184 (251)
Q Consensus 124 l~~RlGitaG~Cvliq~~pek~GdryEaiySfyfGdyGhIsvqGpylt~eD---tyLAVTGGtG 184 (251)
....+....+.+++--+.|...|-+|++.-.. -.+.|.|++.|..+..++ ..|.|+.+|.
T Consensus 170 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~v-~~~gG~v~~~~~~l~v~~A~~v~l~~~~~T~ 232 (236)
T PF14498_consen 170 RSAVVTAGGGTLTLRGQAPGDNGMRFAGRVRV-VATGGTVTADGGGLRVEGADEVTLYVSAATD 232 (236)
T ss_dssp CEEEEEEETTEEEEEEEE-TTTS-EEEEEEEE-EECCCECECCTTCEEEEEESEEEEEEEEEES
T ss_pred ccceEeecCCEEEEEEEeCCCCCeEEEEEEEE-EeCCCEEEeeCCEEEEeCCCEEEEEEEEEec
Confidence 34556666667777677779999999999988 788999999998887754 3556666553
No 30
>PRK08051 fre FMN reductase; Validated
Probab=29.37 E-value=50 Score=27.74 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=10.8
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 103 ~~~vliagG~Gi 114 (232)
T PRK08051 103 RPLLLIAGGTGF 114 (232)
T ss_pred CcEEEEecCcCc
Confidence 468999999998
No 31
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=29.11 E-value=48 Score=27.44 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=10.8
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 101 ~~~lliagG~Gi 112 (227)
T cd06213 101 APILCIAGGSGL 112 (227)
T ss_pred CcEEEEecccch
Confidence 578999999998
No 32
>PLN02292 ferric-chelate reductase
Probab=28.75 E-value=42 Score=34.77 Aligned_cols=23 Identities=43% Similarity=0.895 Sum_probs=17.0
Q ss_pred EEEeCcccc------ccccEEEEecccee
Q 025525 163 IAVQGPYLT------YEDTYLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt------~eDtyLAVTGGtGi 185 (251)
+.|+|||=. ..|..+.|.||+||
T Consensus 415 V~VeGPYG~~~~~~~~~~~vvlIAGGiGI 443 (702)
T PLN02292 415 VSVEGPYGPASTDFLRHESLVMVSGGSGI 443 (702)
T ss_pred EEEECCccCCccccccCCcEEEEEeccCH
Confidence 556777642 23689999999997
No 33
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=28.33 E-value=51 Score=26.99 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=11.6
Q ss_pred cccEEEEeccceee
Q 025525 173 EDTYLAVTGGSGIF 186 (251)
Q Consensus 173 eDtyLAVTGGtGif 186 (251)
.+.++.|.||+||-
T Consensus 103 ~~~~vlIagG~Gia 116 (231)
T cd06215 103 ADKLLLLSAGSGIT 116 (231)
T ss_pred CCcEEEEecCcCcc
Confidence 35789999999974
No 34
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=28.31 E-value=45 Score=27.84 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=10.9
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.++.|.||+||=
T Consensus 123 ~~~v~iagG~Gia 135 (243)
T cd06216 123 PRLLLIAAGSGIT 135 (243)
T ss_pred CCEEEEecCccHh
Confidence 4689999999973
No 35
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=27.89 E-value=50 Score=29.36 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=16.8
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.|.|||=++ .+.++.|.||+||-
T Consensus 187 ~v~v~gP~G~~~~~~~~~~~ivlIagGtGia 217 (339)
T PRK07609 187 ILRIEGPLGTFFLREDSDKPIVLLASGTGFA 217 (339)
T ss_pred EEEEEcCceeEEecCCCCCCEEEEecCcChh
Confidence 45566665333 23689999999983
No 36
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=27.77 E-value=53 Score=28.58 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=16.6
Q ss_pred eEEEeCcccc---c----cccEEEEecccee
Q 025525 162 HIAVQGPYLT---Y----EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt---~----eDtyLAVTGGtGi 185 (251)
.|.|.|||=+ . .+.++.|.||+||
T Consensus 81 ~v~i~gP~G~~f~~~~~~~~~~llIAgGtGI 111 (261)
T TIGR02911 81 NLFLRGPYGNGFDVDNYKHKELVVVAGGTGV 111 (261)
T ss_pred EEEEecCCCCCcccCccCCceEEEEecccCc
Confidence 4666777632 2 2368999999997
No 37
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=27.71 E-value=50 Score=27.30 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.1
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.+|.|.||+||-
T Consensus 104 ~~~l~iagG~Gia 116 (232)
T cd06212 104 RPIVLIGGGSGMA 116 (232)
T ss_pred CcEEEEecCcchh
Confidence 4789999999984
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=27.61 E-value=50 Score=28.25 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.9
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.++-|.|||||=
T Consensus 99 ~~~vlIagGtGIa 111 (246)
T cd06218 99 GKVLLVGGGIGIA 111 (246)
T ss_pred CcEEEEecccCHH
Confidence 4788999999973
No 39
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=27.07 E-value=46 Score=34.59 Aligned_cols=23 Identities=48% Similarity=0.842 Sum_probs=16.2
Q ss_pred EEEeCccccc------cccEEEEecccee
Q 025525 163 IAVQGPYLTY------EDTYLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt~------eDtyLAVTGGtGi 185 (251)
+.|.|||=+. .|..+-|.||+||
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGI 435 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGI 435 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCH
Confidence 4555555432 2789999999997
No 40
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=26.96 E-value=58 Score=26.65 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=16.7
Q ss_pred eEEEeCccccc-------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|.|||=.+ .+..+.|.||+||
T Consensus 79 ~v~i~gP~G~~~~~~~~~~~~~v~iagG~Gi 109 (222)
T cd06194 79 ALRLQGPFGQAFYRPEYGEGPLLLVGAGTGL 109 (222)
T ss_pred EEEEecCcCCeeccCCCCCCCEEEEecCcch
Confidence 46667765432 2468899999998
No 41
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=26.21 E-value=2e+02 Score=24.45 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=37.0
Q ss_pred cccccccccCcc---ccccccceecceeeeE-----EEEeeccCCCCCeEEEEEEEEeecCeeEEEeCccccc
Q 025525 108 SLGDLVPFSNKL---YTGDLQKRLGITAGLC-----ILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTY 172 (251)
Q Consensus 108 slGDlVpFsNkL---Y~g~l~~RlGitaG~C-----vliq~~pek~GdryEaiySfyfGdyGhIsvqGpylt~ 172 (251)
..||+|=|.-+- ......+. =+-.|+| .+|+.+-..-||+.|.. .|.+.|.|-.++.
T Consensus 48 ~rGDiVvf~~p~~~~~~~~~~rg-~l~~g~~p~~~~~~vKRViglpGD~V~i~-------~~~v~INg~~~~~ 112 (171)
T TIGR02771 48 ERGDYVVFCPPDNPQFEEARERG-YLREGLCPGGFGPLLKRVLGLPGDRVTVR-------ADVVAINGQLLPY 112 (171)
T ss_pred CCCcEEEEeCCCchhhhchhhcC-cccccccCcCccceEEEEEEeCCCEEEEE-------CCEEEECCEEccc
Confidence 579999887441 11111111 1345788 88999999999999864 4678888865543
No 42
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=26.05 E-value=54 Score=30.01 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=26.4
Q ss_pred cEEEEeccceeeeeee-eEEEEeeeeeceeE----EEEEEecCCC
Q 025525 175 TYLAVTGGSGIFEGVY-GQVKLQQLVFPFKL----FYTFYLKGIK 214 (251)
Q Consensus 175 tyLAVTGGtGifeGa~-GqVkL~qivfPfkl----fYtFylkGi~ 214 (251)
.-+||.||||++.-+. +.++ ..+.-||.- +.-..|.|.+
T Consensus 6 p~igII~GSGl~~l~~~~~~~-~~~~tpyg~~sg~l~~G~l~g~~ 49 (264)
T PRK07823 6 AMLGVIGGSGFYSFFGSDARE-VNVDTPYGPPSAPITIGEVGGRR 49 (264)
T ss_pred ceEEEEeccccchhhccccee-eEEeccCCCCCCCEEEEEECCEE
Confidence 3689999999999776 4434 445568863 4445677764
No 43
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=25.97 E-value=24 Score=18.27 Aligned_cols=8 Identities=63% Similarity=1.418 Sum_probs=5.6
Q ss_pred eecCeeEE
Q 025525 157 FGDYGHIA 164 (251)
Q Consensus 157 fGdyGhIs 164 (251)
|.||||..
T Consensus 1 f~dyghmr 8 (9)
T PF08257_consen 1 FDDYGHMR 8 (9)
T ss_pred CCcccccc
Confidence 56888863
No 44
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=25.75 E-value=60 Score=27.29 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=16.6
Q ss_pred eEEEeCcccc------ccccEEEEecccee
Q 025525 162 HIAVQGPYLT------YEDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt------~eDtyLAVTGGtGi 185 (251)
.|.|.|||=+ -.+.+|.|.||+||
T Consensus 80 ~l~i~gP~G~~~~~~~~~~~~lliagGtGi 109 (243)
T cd06192 80 KLDVMGPLGNGFEGPKKGGTVLLVAGGIGL 109 (243)
T ss_pred EEEEEccCCCCCccCCCCCEEEEEeCcccH
Confidence 4666666521 13468999999998
No 45
>PLN02631 ferric-chelate reductase
Probab=25.66 E-value=58 Score=33.82 Aligned_cols=24 Identities=38% Similarity=0.815 Sum_probs=17.3
Q ss_pred eEEEeCccc----c--ccccEEEEecccee
Q 025525 162 HIAVQGPYL----T--YEDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpyl----t--~eDtyLAVTGGtGi 185 (251)
.+.|.|||= + -.|..+.|.||+||
T Consensus 395 ~V~VeGPYG~~~~~~~~~~~vVlIAGGsGI 424 (699)
T PLN02631 395 EVSTEGPYGPNSFDVSRHNSLILVSGGSGI 424 (699)
T ss_pred EEEEECCCCCCCCCcCCCCcEEEEEeCcCh
Confidence 366667773 1 13679999999997
No 46
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=25.13 E-value=61 Score=27.83 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=16.9
Q ss_pred eEEEeCcccc---c----cccEEEEeccceee
Q 025525 162 HIAVQGPYLT---Y----EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt---~----eDtyLAVTGGtGif 186 (251)
.|.+.|||=+ . .+..+.|.||+||-
T Consensus 80 ~v~i~gP~G~~f~~~~~~~~~iv~IA~G~Git 111 (253)
T cd06221 80 TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLA 111 (253)
T ss_pred EEEEECCcCCCcccccccCCeEEEEccccchh
Confidence 4566666522 1 25789999999973
No 47
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=24.73 E-value=58 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=11.0
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.++.|.||+||=
T Consensus 99 ~~ivliagG~Gia 111 (224)
T cd06189 99 RPLILIAGGTGFA 111 (224)
T ss_pred CCEEEEecCcCHH
Confidence 4689999999983
No 48
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=24.72 E-value=4.9e+02 Score=25.98 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=41.5
Q ss_pred eeEEEEeecc-CCCCCeEEEEEEEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEec
Q 025525 133 GLCILIENKP-EKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLK 211 (251)
Q Consensus 133 G~Cvliq~~p-ek~GdryEaiySfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylk 211 (251)
|+|.+-.-.. ++.-.-|+|.|++-.-+ .|-+||++|=-|+ +| |+.|.+-..+=+++
T Consensus 76 ~ir~lq~y~D~d~~Esfytcsw~yd~~~-------------~~p~la~~G~~Gv-------Ir---Vid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 76 GIRLLQSYADEDHDESFYTCSWSYDSNT-------------GNPFLAAGGYLGV-------IR---VIDVVSGQCSKNYR 132 (385)
T ss_pred ceeeeeeccCCCCCcceEEEEEEecCCC-------------CCeeEEeecceeE-------EE---EEecchhhhcccee
Confidence 7777644333 35556799999872221 4789999874443 33 34455666666666
Q ss_pred CCCCChhhhcCCCCCC
Q 025525 212 GIKDLPEVLLGKPVDP 227 (251)
Q Consensus 212 Gi~dLP~el~~~~v~P 227 (251)
|--+-=.||-.-|-.|
T Consensus 133 ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRP 148 (385)
T ss_pred ccCccchhhhcCCCCC
Confidence 6544444444444443
No 49
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=24.26 E-value=65 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 151 ~~~vlIAgGtGI 162 (283)
T cd06188 151 REMVFIGGGAGM 162 (283)
T ss_pred CcEEEEEecccH
Confidence 468999999998
No 50
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=23.72 E-value=50 Score=28.97 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=25.1
Q ss_pred EEEeccceeeeeeeeEEEEeeeeeceeE---------------EEEEEecCCC
Q 025525 177 LAVTGGSGIFEGVYGQVKLQQLVFPFKL---------------FYTFYLKGIK 214 (251)
Q Consensus 177 LAVTGGtGifeGa~GqVkL~qivfPfkl---------------fYtFylkGi~ 214 (251)
++|.||||++... ..+ .+.+.-|++- ||.-.++|.+
T Consensus 2 ~~ii~gsg~~~~~-~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~g~~ 52 (248)
T TIGR01697 2 VAIILGSGLGALA-DQV-EDAVIIPYEKIPGFPVSTVVGHAGELVFGRLGGKP 52 (248)
T ss_pred EEEEeeCCcchhh-hhc-ccceEeeCccCCCCCCcccCCCCccEEEEEECCEE
Confidence 6899999999966 323 4455557652 7877887753
No 51
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=23.12 E-value=68 Score=26.82 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+..+.|.||+||
T Consensus 110 ~~~v~iagG~Gi 121 (238)
T cd06211 110 RPIIFIAGGSGL 121 (238)
T ss_pred CCEEEEeCCcCH
Confidence 578999999997
No 52
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=23.06 E-value=64 Score=28.84 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+..+.|-|||||
T Consensus 157 ~~~vlIAgGtGI 168 (307)
T PLN03116 157 ATHIMVATGTGI 168 (307)
T ss_pred CcEEEEecCccH
Confidence 368999999997
No 53
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=22.56 E-value=69 Score=26.47 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.2
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+..+-|.||+||
T Consensus 109 ~~~vliagGtGi 120 (236)
T cd06210 109 RPRWFVAGGTGL 120 (236)
T ss_pred ccEEEEccCcch
Confidence 457889999998
No 54
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=21.90 E-value=75 Score=27.70 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=10.5
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++-|-||+||
T Consensus 102 ~~~llIAgGtGI 113 (263)
T PRK08221 102 KELIVVAGGTGV 113 (263)
T ss_pred ccEEEEcccccH
Confidence 378999999997
No 55
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=21.80 E-value=76 Score=26.81 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=16.5
Q ss_pred eEEEeCccccc-----cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY-----EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~-----eDtyLAVTGGtGif 186 (251)
.|.|.||+=++ .+.++.|-|||||=
T Consensus 104 ~v~v~gP~G~~~~~~~~~~~vlia~GtGi~ 133 (235)
T cd06193 104 TLGIAGPGGSFLPPPDADWYLLAGDETALP 133 (235)
T ss_pred EEEEECCCCCCCCCCCcceEEEEeccchHH
Confidence 45555664433 23689999999973
No 56
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=21.73 E-value=74 Score=28.50 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=9.8
Q ss_pred cEEEEecccee
Q 025525 175 TYLAVTGGSGI 185 (251)
Q Consensus 175 tyLAVTGGtGi 185 (251)
-++.|-||+||
T Consensus 168 ~illIAgGtGI 178 (300)
T PTZ00319 168 AFAMIAGGTGI 178 (300)
T ss_pred eEEEEecCccc
Confidence 57899999998
No 57
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=21.50 E-value=76 Score=27.10 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=15.1
Q ss_pred EEeCccccc-----cccEEEEecccee
Q 025525 164 AVQGPYLTY-----EDTYLAVTGGSGI 185 (251)
Q Consensus 164 svqGpylt~-----eDtyLAVTGGtGi 185 (251)
.+.|||=++ .+.+|-|.||+||
T Consensus 83 ~i~gP~G~~~~~~~~~~~lliagG~Gi 109 (248)
T cd06219 83 DVVGPLGKPSEIENYGTVVFVGGGVGI 109 (248)
T ss_pred eeecCCCCCeecCCCCeEEEEeCcccH
Confidence 466665221 3578999999997
No 58
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=21.47 E-value=72 Score=26.64 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=10.7
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++-|.||+||
T Consensus 102 ~~~vlIagGtGi 113 (241)
T cd06195 102 KRLWLLATGTGI 113 (241)
T ss_pred ceEEEEeeccch
Confidence 578899999998
No 59
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=21.43 E-value=58 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=15.3
Q ss_pred eCccccccccEEEEecccee
Q 025525 166 QGPYLTYEDTYLAVTGGSGI 185 (251)
Q Consensus 166 qGpylt~eDtyLAVTGGtGi 185 (251)
++++++.++-...||||+|-
T Consensus 1 ~~~~~~l~~k~vlItG~s~g 20 (266)
T PRK06171 1 MQDWLNLQGKIIIVTGGSSG 20 (266)
T ss_pred CcccccCCCCEEEEeCCCCh
Confidence 35667778888899998864
No 60
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=21.29 E-value=54 Score=32.06 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCCCCceeEEEEEEEeecccCCCcceEeec
Q 025525 73 DDPRPTKVQELHVYEINERDRGSPAYLRLS 102 (251)
Q Consensus 73 ~~~~p~kvqel~VyEiNErDr~SPa~L~ls 102 (251)
|..+|.+|.. -+|+|+.-|.+||.++--.
T Consensus 260 DPqkP~~v~~-g~y~ig~p~~~spv~vt~n 288 (386)
T PF03599_consen 260 DPQKPMAVEP-GLYEIGNPDENSPVLVTTN 288 (386)
T ss_dssp -TTS--B--S-SEEEESS--TTS-EEEEES
T ss_pred CCCCCcccCC-CceeCCCCCCCCCEEEEee
Confidence 5556777766 7999999999999998744
No 61
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.67 E-value=71 Score=28.56 Aligned_cols=12 Identities=58% Similarity=0.991 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.+|-|.||+||
T Consensus 110 ~~~lliagG~GI 121 (352)
T TIGR02160 110 GHYVAVAAGSGI 121 (352)
T ss_pred ccEEEEeccccH
Confidence 578999999997
Done!