Query 025525
Match_columns 251
No_of_seqs 58 out of 60
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 12:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h6b_A Allene oxide cyclase; B 100.0 1E-103 4E-108 676.2 17.4 180 72-251 9-195 (195)
2 2brj_A Arabidopsis thaliana ge 100.0 4.2E-99 1E-103 645.8 16.7 178 74-251 10-188 (188)
3 3a1f_A Cytochrome B-245 heavy 66.5 1.2 4E-05 33.4 -0.0 23 164-186 2-30 (186)
4 1umk_A B5R, NADH-cytochrome B5 57.1 4.9 0.00017 32.5 2.0 14 173-186 146-159 (275)
5 2eix_A NADH-cytochrome B5 redu 45.0 11 0.00036 29.8 2.1 25 162-186 99-129 (243)
6 1tvc_A Methane monooxygenase c 44.6 11 0.00039 30.0 2.3 25 162-186 100-130 (250)
7 3lyu_A Putative hydrogenase; t 44.2 8 0.00027 29.4 1.3 23 163-185 3-30 (142)
8 3lrx_A Putative hydrogenase; a 44.1 8.1 0.00028 29.8 1.3 23 163-185 8-35 (158)
9 4eh1_A Flavohemoprotein; struc 40.2 14 0.00048 29.0 2.1 13 173-185 114-126 (243)
10 1ep3_B Dihydroorotate dehydrog 37.7 17 0.00058 29.5 2.3 25 162-186 91-123 (262)
11 2cnd_A NADH-dependent nitrate 37.5 16 0.00055 29.3 2.1 13 173-185 136-148 (270)
12 1qfj_A Protein (flavin reducta 37.4 17 0.00058 28.4 2.2 25 162-186 85-115 (232)
13 1fdr_A Flavodoxin reductase; f 35.7 24 0.00081 27.9 2.8 24 162-185 87-118 (248)
14 2r6h_A NADH:ubiquinone oxidore 35.5 18 0.00061 29.3 2.1 13 173-185 156-168 (290)
15 2qdx_A Ferredoxin reductase; o 35.5 21 0.00072 28.5 2.5 13 173-185 106-118 (257)
16 2pia_A Phthalate dioxygenase r 34.8 20 0.00068 30.2 2.4 25 162-186 95-124 (321)
17 4fk8_A Ferredoxin--NADP reduct 33.9 26 0.00089 28.2 2.8 24 162-185 103-134 (271)
18 2bgi_A Ferredoxin-NADP(H) redu 33.1 22 0.00075 29.0 2.3 13 173-185 120-132 (272)
19 3lo8_A Ferredoxin--NADP reduct 31.5 24 0.00081 29.2 2.3 12 174-185 161-172 (311)
20 2bmw_A Ferredoxin--NADP reduct 30.6 24 0.00081 29.0 2.1 24 162-185 130-160 (304)
21 1fnb_A Ferredoxin-NADP+ reduct 30.2 25 0.00087 29.2 2.3 24 162-185 144-174 (314)
22 1krh_A Benzoate 1,2-dioxygenas 29.6 25 0.00086 29.4 2.2 25 162-186 194-223 (338)
23 3jqq_A Ferredoxin NADP reducta 29.5 27 0.00091 29.6 2.3 24 162-185 150-182 (316)
24 2rc5_A Ferredoxin-NADP reducta 29.4 27 0.00093 28.9 2.3 25 162-186 146-178 (314)
25 3vo2_A Putative uncharacterize 26.4 33 0.0011 28.7 2.3 24 162-185 140-170 (310)
26 2gpj_A Siderophore-interacting 23.9 37 0.0013 27.6 2.1 13 174-186 113-125 (252)
27 4g1v_A Flavohemoglobin; three 22.2 41 0.0014 29.0 2.2 13 173-185 272-284 (399)
28 1cqx_A Flavohemoprotein; globi 21.3 51 0.0017 28.3 2.5 24 162-185 249-278 (403)
29 3zx7_A Lysenin; toxin, pore fo 20.4 45 0.0015 30.1 2.1 22 107-137 252-273 (309)
No 1
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=100.00 E-value=1.3e-103 Score=676.17 Aligned_cols=180 Identities=67% Similarity=1.174 Sum_probs=171.7
Q ss_pred CCCCCCceeEEEEEEEeecccCCCcceEeecCCc-------cccccccccccCccccccccceecceeeeEEEEeeccCC
Q 025525 72 SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKP-------VNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEK 144 (251)
Q Consensus 72 ~~~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~-------~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek 144 (251)
.++++|+|||||+|||||||||+||||||||||. +|+|||||||+|||||++|++|||||+|+||+|||+|||
T Consensus 9 ~~~~~p~~vqel~VyEiNE~dr~sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l~~RiGitaG~Cv~i~~~~~k 88 (195)
T 4h6b_A 9 ARGASPGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITAGLCTLISHSDQK 88 (195)
T ss_dssp -------CCEEEEEEEECCSCSCCCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTSCCEEEEEEEEEEEEEEETTT
T ss_pred ccCCCCceeEEEEEEEecccccCCcceeecccccCccccccccccccccccccccccccccccccccccEEEEEeecCCC
Confidence 3788999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCCCChhhhcCCC
Q 025525 145 KGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIKDLPEVLLGKP 224 (251)
Q Consensus 145 ~GdryEaiySfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~dLP~el~~~~ 224 (251)
+||||||+|||||||||||+|||||+||||+|||||||||||+||+|||||||||||||||||||||||||||+||+++|
T Consensus 89 ~GdryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~pfklfytfyl~gi~~lp~~l~~~~ 168 (195)
T 4h6b_A 89 NGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCAPC 168 (195)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEETTTEEEEEEEEESSCCCCGGGCSCC
T ss_pred CCceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeeeeeeEEEEEEecccccchHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchhccCCCccccCCCC
Q 025525 225 VDPHPGVEPSPAAKACEPGAAIDNFTN 251 (251)
Q Consensus 225 v~Ps~~vep~p~aka~~p~a~~~nft~ 251 (251)
|+|+|+|||+|+|||||||++++|||.
T Consensus 169 v~p~~~vep~~~ak~~~p~~~~~nft~ 195 (195)
T 4h6b_A 169 VPPSPSVAPADEAKQCLPNHVAPNFTK 195 (195)
T ss_dssp CCCCTTCCCCHHHHTTCTTSBCTTCCC
T ss_pred CCCCCCCCcChhHhhcCCccccccccC
Confidence 999999999999999999999999995
No 2
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=100.00 E-value=4.2e-99 Score=645.75 Aligned_cols=178 Identities=69% Similarity=1.175 Sum_probs=172.6
Q ss_pred CCCCceeEEEEEEEeecccCCCcceEeecCCccccccccccccCccccccccceecceeeeEEEEeeccCCCCCeEEEEE
Q 025525 74 DPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIY 153 (251)
Q Consensus 74 ~~~p~kvqel~VyEiNErDr~SPa~L~ls~k~~nslGDlVpFsNkLY~g~l~~RlGitaG~Cvliq~~pek~GdryEaiy 153 (251)
+..|+|||||+|||||||||+||||||||||++|++||||||+|||||+++++|||||+|+|++|||+||++||||||+|
T Consensus 10 ~~~~~~vq~l~vye~NE~dr~sPa~L~l~~k~~~slGDlvpFsNkLydg~l~~rvG~taG~Cv~~~~~p~~~gdryE~ty 89 (188)
T 2brj_A 10 HRSPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATY 89 (188)
T ss_dssp -----CCEEEEEEEECCSCSCCCCCBCCCSSSSSCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred cCCccceEEEEEEEecccccCCCceEEcccccCcCcccEEeecccccccccceeccccceEEEEEEecCCCCCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeeEEEeCccccccccEEEEeccceeeeeeeeEEEEeeeeeceeEEEEEEecCCC-CChhhhcCCCCCCCCCCC
Q 025525 154 SFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIK-DLPEVLLGKPVDPHPGVE 232 (251)
Q Consensus 154 SfyfGdyGhIsvqGpylt~eDtyLAVTGGtGifeGa~GqVkL~qivfPfklfYtFylkGi~-dLP~el~~~~v~Ps~~ve 232 (251)
||||||||||||||||+||||+|||||||||||+|||||||||||+||||+|||||||||| |||+||+++||+|+|+||
T Consensus 90 S~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P~k~~yTf~L~gi~~~lp~~l~~~~v~p~~~ve 169 (188)
T 2brj_A 90 SFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIE 169 (188)
T ss_dssp EEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTCC
T ss_pred EEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccCceEEEEEEEecCcccCcHHHhCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCcchhccCCCccccCCCC
Q 025525 233 PSPAAKACEPGAAIDNFTN 251 (251)
Q Consensus 233 p~p~aka~~p~a~~~nft~ 251 (251)
|+|+||||||+++++||||
T Consensus 170 p~~~a~~~~p~~~~~n~t~ 188 (188)
T 2brj_A 170 PAPEAKALEPSGVISNYTN 188 (188)
T ss_dssp CCHHHHTTCGGGBCTTCCC
T ss_pred cChHHhhcCCcccccccCC
Confidence 9999999999999999997
No 3
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=66.54 E-value=1.2 Score=33.36 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=16.1
Q ss_pred EEeCccccc------cccEEEEeccceee
Q 025525 164 AVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 164 svqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.|||=++ .+..+-|.||+||=
T Consensus 2 ~v~GP~G~~~~~~~~~~~~vlIagG~GIt 30 (186)
T 3a1f_A 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVT 30 (186)
T ss_dssp CTTSTTSHHHHHHTTSSEEEEEEEGGGHH
T ss_pred eEECCCCCCccChhhCCeEEEEecCccHH
Confidence 456776322 35789999999984
No 4
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=57.09 E-value=4.9 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.7
Q ss_pred cccEEEEeccceee
Q 025525 173 EDTYLAVTGGSGIF 186 (251)
Q Consensus 173 eDtyLAVTGGtGif 186 (251)
.+.++-|.||+||=
T Consensus 146 ~~~~vliagGtGIa 159 (275)
T 1umk_A 146 VKSVGMIAGGTGIT 159 (275)
T ss_dssp CSEEEEEEEGGGHH
T ss_pred CceEEEEecCccHh
Confidence 46789999999983
No 5
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=45.01 E-value=11 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=17.4
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.|.|||=++ .+.++.|.||+||=
T Consensus 99 ~v~v~gP~G~f~~~~~~~~~~vliagG~Gia 129 (243)
T 2eix_A 99 FLQVRGPKGQFDYKPNMVKEMGMIAGGTGIT 129 (243)
T ss_dssp EEEEEEEECSCCCCTTSSSEEEEEEEGGGHH
T ss_pred EEEEECCeEEEEeCCCCCcEEEEEecCccHH
Confidence 45666666332 35689999999984
No 6
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=44.58 E-value=11 Score=29.99 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=17.2
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.|.|||=++ .+.++.|.||+||=
T Consensus 100 ~v~v~gP~G~~~~~~~~~~~~vliagGtGia 130 (250)
T 1tvc_A 100 VLSVKGPLGVFGLKERGMAPRYFVAGGTGLA 130 (250)
T ss_dssp EEEEEEEECCCSCCCCSSSCEEEEEESSTTH
T ss_pred EEEEEcCccccccCccCCceEEEEEeccCHH
Confidence 45566665332 26699999999983
No 7
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=44.22 E-value=8 Score=29.39 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=13.9
Q ss_pred EEEeCccccc-----cccEEEEecccee
Q 025525 163 IAVQGPYLTY-----EDTYLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt~-----eDtyLAVTGGtGi 185 (251)
+.|.|||=++ ...++.|.||+||
T Consensus 3 ~~v~GP~G~~~~~~~~~~~llIaGG~Gi 30 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEKFGKILAIGAYTGI 30 (142)
T ss_dssp ----CCCSCCBCCCCCSEEEEEEETTHH
T ss_pred eeeeCCCCCCccCCCCCeEEEEECcCcH
Confidence 3566776432 3468999999996
No 8
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=44.10 E-value=8.1 Score=29.81 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=14.1
Q ss_pred EEEeCccccc-----cccEEEEecccee
Q 025525 163 IAVQGPYLTY-----EDTYLAVTGGSGI 185 (251)
Q Consensus 163 IsvqGpylt~-----eDtyLAVTGGtGi 185 (251)
|.|.|||=++ ...++.|.||+||
T Consensus 8 l~v~gP~G~~f~~~~~~~~llIaGG~GI 35 (158)
T 3lrx_A 8 LNVAGPLGTPVPMEKFGKILAIGAYTGI 35 (158)
T ss_dssp ----CCCCCCBCCCCCSEEEEEEETTHH
T ss_pred eEEECCCCCCCccCCCCeEEEEEccCcH
Confidence 3788887321 3468999999996
No 9
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=40.16 E-value=14 Score=29.02 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=11.3
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 114 ~~~~vliagGtGi 126 (243)
T 4eh1_A 114 ERPVVLISAGVGA 126 (243)
T ss_dssp SSCEEEEEEGGGH
T ss_pred CCCEEEEEccccH
Confidence 4679999999997
No 10
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=37.71 E-value=17 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=16.9
Q ss_pred eEEEeCccc---cc-----cccEEEEeccceee
Q 025525 162 HIAVQGPYL---TY-----EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpyl---t~-----eDtyLAVTGGtGif 186 (251)
.|.|.|||= .. .+.++-|.|||||=
T Consensus 91 ~v~v~gP~G~~f~l~~~~~~~~~lliagGtGit 123 (262)
T 1ep3_B 91 KVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVP 123 (262)
T ss_dssp EEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSH
T ss_pred EEEEEcccCCCccCCCccCCCeEEEEECcCcHH
Confidence 355666662 22 35689999999983
No 11
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=37.48 E-value=16 Score=29.26 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.3
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 136 ~~~~vliagGtGi 148 (270)
T 2cnd_A 136 ARRLAMICGGSGI 148 (270)
T ss_dssp CSEEEEEEEGGGH
T ss_pred CCEEEEEeccccH
Confidence 4569999999998
No 12
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=37.44 E-value=17 Score=28.42 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=17.2
Q ss_pred eEEEeCccccc------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGif 186 (251)
.|.|.|||=++ .+.++-|.||+||=
T Consensus 85 ~v~v~gP~G~~~~~~~~~~~~vliagG~Git 115 (232)
T 1qfj_A 85 QIVVDIPHGEAWLRDDEERPMILIAGGTGFS 115 (232)
T ss_dssp EEEEEEEECSCCCCSCSSSCEEEEEETTCHH
T ss_pred EEEEeCCccceEeCCCCCCcEEEEEecccHh
Confidence 45566665332 35699999999983
No 13
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=35.68 E-value=24 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=16.5
Q ss_pred eEEEe-Cccccc-------cccEEEEecccee
Q 025525 162 HIAVQ-GPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvq-Gpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|. |||=.+ .+.++-|.||+||
T Consensus 87 ~v~v~~gP~G~f~l~~~~~~~~~vliagG~Gi 118 (248)
T 1fdr_A 87 EVQVVSEAAGFFVLDEVPHCETLWMLATGTAI 118 (248)
T ss_dssp EEEEESSCBCCCSGGGSCCCSEEEEEEEGGGG
T ss_pred EEEEecCCcceeEcCCCCCCceEEEEEecccH
Confidence 35556 665332 3568999999998
No 14
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=35.52 E-value=18 Score=29.30 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=11.3
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 156 ~~~~vliagGtGi 168 (290)
T 2r6h_A 156 DAEMLYIGGGAGM 168 (290)
T ss_dssp SCEEEEEEEGGGH
T ss_pred CCeEEEEECccCH
Confidence 4579999999998
No 15
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=35.46 E-value=21 Score=28.52 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=11.2
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 106 ~~~~vliagG~Gi 118 (257)
T 2qdx_A 106 GKHLYLLSTGTGM 118 (257)
T ss_dssp CSEEEEEEEGGGG
T ss_pred CCeEEEEEeceEH
Confidence 3568999999998
No 16
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=34.77 E-value=20 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=18.2
Q ss_pred eEEEeCccccc-----cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY-----EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~-----eDtyLAVTGGtGif 186 (251)
.|.|.|||-.+ .+.++.|.||+||=
T Consensus 95 ~v~v~gP~g~f~l~~~~~~~vliagG~GIt 124 (321)
T 2pia_A 95 AVEVSLPRNEFPLDKRAKSFILVAGGIGIT 124 (321)
T ss_dssp EEEECCCBCCSCCCTTCSEEEEEEEGGGHH
T ss_pred EEEEeCCccccccCCCCCCEEEEEecccHh
Confidence 46677776433 35699999999983
No 17
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=33.87 E-value=26 Score=28.22 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=16.6
Q ss_pred eEEEe-Cccccc-------cccEEEEecccee
Q 025525 162 HIAVQ-GPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvq-Gpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|. |||=.+ .+.++-|.||+||
T Consensus 103 ~v~v~~gP~G~~~~~~~~~~~~~vliagG~Gi 134 (271)
T 4fk8_A 103 PVLIGKKPTGTLVADNLLPGKTLWMLSTGTGL 134 (271)
T ss_dssp EEEEESCCBCSCCGGGBCCCSEEEEEECGGGG
T ss_pred EEEEecCCCcceecCCcCCCCeEEEEECCEEH
Confidence 45566 665432 3568999999998
No 18
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=33.08 E-value=22 Score=28.96 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.2
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 120 ~~~~vliagG~Gi 132 (272)
T 2bgi_A 120 GKRLWFLATGTGI 132 (272)
T ss_dssp CSEEEEEEEGGGG
T ss_pred CCeEEEEeecccH
Confidence 3568999999998
No 19
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=31.47 E-value=24 Score=29.25 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025525 174 DTYLAVTGGSGI 185 (251)
Q Consensus 174 DtyLAVTGGtGi 185 (251)
+.++.|.||+||
T Consensus 161 ~~~vlIagGtGI 172 (311)
T 3lo8_A 161 ATHIMIATGTGV 172 (311)
T ss_dssp CEEEEEEEGGGG
T ss_pred CCEEEEECCEEH
Confidence 468999999997
No 20
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=30.55 E-value=24 Score=29.05 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=16.2
Q ss_pred eEEEeCccccc-------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|.|||=.+ .+.++-|.|||||
T Consensus 130 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 160 (304)
T 2bmw_A 130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGI 160 (304)
T ss_dssp EEEEEEEECSSSCCCSCTTCEEEEEEEGGGH
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEecCccH
Confidence 35566665321 3468999999997
No 21
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=30.24 E-value=25 Score=29.19 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=16.5
Q ss_pred eEEEeCccccc-------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|.|||=++ .+.++-|.||+||
T Consensus 144 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 174 (314)
T 1fnb_A 144 EVKLTGPVGKEMLMPKDPNATIIMLGTGTGI 174 (314)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEeCCccH
Confidence 45566665322 2468999999998
No 22
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=29.62 E-value=25 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.725 Sum_probs=18.1
Q ss_pred eEEEeCccccc-----cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY-----EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~-----eDtyLAVTGGtGif 186 (251)
.|.|.|||=++ .+.++-|.||+||=
T Consensus 194 ~v~v~gP~G~f~~~~~~~~~vliagGtGia 223 (338)
T 1krh_A 194 KMSFTGPFGSFYLRDVKRPVLMLAGGTGIA 223 (338)
T ss_dssp EEEEEEEECSCSCCCCSSCEEEEEEGGGHH
T ss_pred EEEEECCccceEeCCCCceEEEEEccccHh
Confidence 56677776433 35799999999983
No 23
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=29.47 E-value=27 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=17.0
Q ss_pred eEEEeCccccc---------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY---------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~---------eDtyLAVTGGtGi 185 (251)
.|.|.|||=++ .+..+-|.||+||
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGI 182 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGI 182 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGG
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCcee
Confidence 46666766433 2458999999997
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=29.45 E-value=27 Score=28.91 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=17.0
Q ss_pred eEEEeCccccc--------cccEEEEeccceee
Q 025525 162 HIAVQGPYLTY--------EDTYLAVTGGSGIF 186 (251)
Q Consensus 162 hIsvqGpylt~--------eDtyLAVTGGtGif 186 (251)
.|.|.|||=.+ .+.++-|.|||||=
T Consensus 146 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIa 178 (314)
T 2rc5_A 146 EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIA 178 (314)
T ss_dssp EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGH
T ss_pred EEEEEeccCCceeCCCCCCCCCEEEEECCccHH
Confidence 45566665322 34689999999983
No 25
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=26.40 E-value=33 Score=28.66 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=16.7
Q ss_pred eEEEeCccccc-------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY-------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~-------eDtyLAVTGGtGi 185 (251)
.|.|.|||=.+ .+.++-|.|||||
T Consensus 140 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 170 (310)
T 3vo2_A 140 DVKITGPVGKEMLMPKDPNATVIMLATGTGI 170 (310)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEeCCcch
Confidence 46666665431 2468999999997
No 26
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=23.94 E-value=37 Score=27.59 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.1
Q ss_pred ccEEEEeccceee
Q 025525 174 DTYLAVTGGSGIF 186 (251)
Q Consensus 174 DtyLAVTGGtGif 186 (251)
+.+|-|.||+||=
T Consensus 113 ~~~lliagGtGit 125 (252)
T 2gpj_A 113 DWFLLAGDMTALP 125 (252)
T ss_dssp SEEEEEEEGGGHH
T ss_pred ceEEEEcchhhHH
Confidence 4699999999984
No 27
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=22.23 E-value=41 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=11.0
Q ss_pred cccEEEEecccee
Q 025525 173 EDTYLAVTGGSGI 185 (251)
Q Consensus 173 eDtyLAVTGGtGi 185 (251)
.+.++-|.||+||
T Consensus 272 ~~~~vlIagG~Gi 284 (399)
T 4g1v_A 272 EVPLVLLSSGVGV 284 (399)
T ss_dssp SSCEEEEEEGGGH
T ss_pred CCCEEEEecceeH
Confidence 3468999999997
No 28
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=21.30 E-value=51 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.708 Sum_probs=16.2
Q ss_pred eEEEeCccccc------cccEEEEecccee
Q 025525 162 HIAVQGPYLTY------EDTYLAVTGGSGI 185 (251)
Q Consensus 162 hIsvqGpylt~------eDtyLAVTGGtGi 185 (251)
.|.|.||+=++ .+.++-|.||+||
T Consensus 249 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGi 278 (403)
T 1cqx_A 249 QVKLAAPYGSFHIDVDAKTPIVLISGGVGL 278 (403)
T ss_dssp EEEECCCBCSCSCCTTCCSCEEEEESSCCH
T ss_pred EEEEecCccCcccCCCCCCCEEEEEecccH
Confidence 45555655322 3468999999998
No 29
>3zx7_A Lysenin; toxin, pore forming toxin; HET: PC; 2.84A {Eisenia fetida} PDB: 3zxd_A* 3zxg_A*
Probab=20.45 E-value=45 Score=30.13 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=18.0
Q ss_pred ccccccccccCccccccccceecceeeeEEE
Q 025525 107 NSLGDLVPFSNKLYTGDLQKRLGITAGLCIL 137 (251)
Q Consensus 107 nslGDlVpFsNkLY~g~l~~RlGitaG~Cvl 137 (251)
---||.|.|.||.|+. +|+|+-
T Consensus 252 lrhgdvvtf~n~~ft~---------sglcyd 273 (309)
T 3zx7_A 252 LRHGDVVTFMNKYFTR---------SGLCYD 273 (309)
T ss_dssp CBTTCEECEEESSSTT---------EEEEEC
T ss_pred cccCcEEEEehhhccc---------Cceecc
Confidence 3569999999999974 588874
Done!