BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025526
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum
GN=IM30 PE=2 SV=1
Length = 323
Score = 301 bits (772), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/242 (69%), Positives = 188/242 (77%), Gaps = 17/242 (7%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
M K QI +G +P P SSS ++KKPL T+ F V LK +RIA
Sbjct: 1 MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
R GGGA+ RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51 VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASA 239
KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAK +S + V ++SA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224
Query: 240 TS 241
S
Sbjct: 225 LS 226
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis
thaliana GN=VIPP1 PE=1 SV=1
Length = 330
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 179/223 (80%), Gaps = 6/223 (2%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKK-PLTTSFFNGGVGALKVTRLRIAPS 59
MA K+ VTG P+ P SSS S+SS+ C ++ PL TSFF GAL+V LR+A
Sbjct: 1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60
Query: 60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
+R C G GA MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct: 61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115
Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct: 116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175
Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222
K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AK
Sbjct: 176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAK 218
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1
Length = 317
Score = 270 bits (691), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/211 (68%), Positives = 167/211 (79%), Gaps = 15/211 (7%)
Query: 12 TMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGA 71
++ + P P +S+S + L TSF NG V +L++ ++R + +R C
Sbjct: 9 SLRLAPPPPASAS-------FRRTALRTSFLNGSV-SLRLIQVRQSNVNRFKCN------ 54
Query: 72 LNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKR 131
R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKR
Sbjct: 55 -GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 113
Query: 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191
LENK KAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV
Sbjct: 114 LENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVE 173
Query: 192 NLVSNTRLLESKIQEARSKKDTLKARAQSAK 222
NLVSNTR+LESKI EA+ KKDTLKARAQSAK
Sbjct: 174 NLVSNTRVLESKIAEAKQKKDTLKARAQSAK 204
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0617 PE=3 SV=1
Length = 267
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 98/140 (70%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M LFDRL RVV++ N ++S EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +
Sbjct: 1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
Q ++ W +A+LAL GEE+LAREAL R+KS D A A + QL QQ+ + NL
Sbjct: 61 LNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRR 120
Query: 196 NTRLLESKIQEARSKKDTLK 215
N LE+KI EA++KK+ L+
Sbjct: 121 NLAALEAKISEAKTKKNMLQ 140
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1
SV=1
Length = 223
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 89/147 (60%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M++FDRL+R++++ N ++S EDP KI++QA+ +M R A +A +LE +
Sbjct: 1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLERE 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ + ++ +KA+ AL+ G EDLAREAL+R +++ D A Q Q++ V+ L +
Sbjct: 61 AGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKT 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSAK 222
R LE+KI E SKK L AR ++A+
Sbjct: 121 QLRALEAKIDEMESKKTLLAARQKTAQ 147
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2
Length = 222
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSA 221
LE+K+ E R+++ L R Q+A
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAA 146
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1
SV=2
Length = 222
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSA 221
LE+K+ E R+++ L R Q+A
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAA 146
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2
Length = 222
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 196 NTRLLESKIQEARSKKDTLKARAQSA 221
LE+K+ E R+++ L R Q+A
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAA 146
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168)
GN=ydjF PE=1 SV=3
Length = 227
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ---KRL 132
M++ R ++ + NA+L E+PEK+++Q + MN DL K++ TA V+A + KR
Sbjct: 1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKRE 60
Query: 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 171
++C+A + E + K ALQ G E AR+ L+R+ S
Sbjct: 61 YHECQADMEKMESYAMK---ALQAGNESDARKFLERKTS 96
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1
Length = 225
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%)
Query: 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153
L E+P+ +L Q V +M D+ K +Q + + + K + A + + +AQLA
Sbjct: 18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77
Query: 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213
GEE+LA++AL K A KA +Q + + +L LE+K+Q+ + KK
Sbjct: 78 FDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQA 137
Query: 214 LKARAQSAK 222
L ARA +AK
Sbjct: 138 LIARANAAK 146
>sp|Q9PTG8|TACC3_XENLA Transforming acidic coiled-coil-containing protein 3 OS=Xenopus
laevis GN=tacc3 PE=1 SV=2
Length = 931
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KRLE 133
+ +++ + I ED ++ E A LE+N L + +Q + + + KRLE
Sbjct: 764 EMGKIIAEFEGTITQILEDSQRQKETAKLELNKVLQEKQQVQVDLNSMETSFSELFKRLE 823
Query: 134 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193
+ +A E YRK + AL+K ED K + Y ALKA +++ N N
Sbjct: 824 KQKEALE-----GYRKNEEALKKCVEDYLVRIKKEEQRY----QALKAHAEEKLNRANEE 874
Query: 194 VSNTR 198
+++ R
Sbjct: 875 IAHVR 879
>sp|P16602|ATI_COWPX A-type inclusion protein A25 homolog OS=Cowpox virus GN=ATI PE=3
SV=1
Length = 1284
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 99 DPEKILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWYRKAQLA 153
D +I ++ + E+ + L + R+ ++ ++E C+ + S W
Sbjct: 486 DSSEIDKKTIRELRESLDREREMRTELERELDTIRDGKVEGSCQRELELSRMW------- 538
Query: 154 LQKGEEDLAREALKRR---------KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204
L++ ++DL E KRR + + K LD+ K ++N VS LES+I
Sbjct: 539 LKQRDDDLRAEIDKRRNVEWELSRLRRDIKECDKYKEDLDKAKTTISNYVSRISTLESEI 598
Query: 205 QEARSKKDTL 214
+ + +DTL
Sbjct: 599 AKYQQDRDTL 608
>sp|P24759|ATI_VACCW A-type inclusion protein A25 OS=Vaccinia virus (strain Western
Reserve) GN=VACWR148 PE=1 SV=2
Length = 725
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 79 FDRLARVVKSYANAILSSFEDPEKILE---QAVLEMNDDLVKMRQATAQV-----LASQK 130
DRL + +K + + I + +D +LE + + E+ + L + R+ +++
Sbjct: 462 IDRLTKEIKEHRD-IQNGTDDGSDLLEIDKKTIRELRESLDREREMRSELEKELDTIRNG 520
Query: 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR---------KSYADNANALKA 181
+++ C+ + S W L++ ++DL E KRR + + K
Sbjct: 521 KVDGSCQRELELSRMW-------LKQRDDDLRAEIDKRRNVEWELSRLRRDIKECDKYKE 573
Query: 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214
LD+ K ++N VS LES+I + + +DTL
Sbjct: 574 DLDKAKTTISNYVSKISTLESEIAKYQQDRDTL 606
>sp|Q9PQF2|DNAK_UREPA Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKF 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|B1AIX8|DNAK_UREP2 Chaperone protein DnaK OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=dnaK PE=3 SV=1
Length = 603
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 36 PLTTSFFN-GGVGALKVTRLRIAPSSRSHCYRQGGG---ALNTRMNLFDR-LARVVKSYA 90
PLT S GGV + R P S+S + +++ R+ +R LA K
Sbjct: 369 PLTLSIETMGGVATPLIPRNTKIPVSKSQIFSTAADNQPSVDIRIVQGERSLAADNKLLG 428
Query: 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150
N LS E + + Q ++ N D + A+ L +QK K ++ S+D K
Sbjct: 429 NFELSGIEPAPRGVPQIEIKFNIDANGIMSVNAKDLKTQKETSITIKDSQGLSQDEIDK- 487
Query: 151 QLALQKGEEDLAREA-LKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRL 199
+++ EE+ ++A +K + + A++L QL+Q QK+V N + +
Sbjct: 488 --MIKEAEENKEKDAKVKHERELVNRADSLINQLEQVSKTENVPQEQKDVFNKQIED--- 542
Query: 200 LESKIQEARSKKDTLKARAQSAKF 223
+ AR +D +K A+ K
Sbjct: 543 ----LTNARDAQDYVKLEAEVKKV 562
>sp|P34011|ATI_VAR67 A-type inclusion protein A25 homolog OS=Variola virus (isolate
Human/India/Ind3/1967) GN=A28L PE=3 SV=1
Length = 702
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
Query: 79 FDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVKMRQATAQV-----LASQKR 131
DRL + +K + + + D +I ++ + E+ + L + R+ +++ +
Sbjct: 463 IDRLTKEIKELRDIQNGTDDGSDSSEIDKKTIRELKESLDREREMRSELEKELDTIRDGK 522
Query: 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD---------NANALKAQ 182
++ C+ + S W L++ ++DL E KRR + + K +
Sbjct: 523 VDGSCQGRLELSRMW-------LKQRDDDLRAEIDKRRNVEWELSKLRRDIKECDKYKEE 575
Query: 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216
LD+ K ++N VS LES+I + + +DTL A
Sbjct: 576 LDKAKTTISNYVSRISTLESEIAKYQQDRDTLSA 609
>sp|Q54HE0|COG5_DICDI Conserved oligomeric Golgi complex subunit 5 OS=Dictyostelium
discoideum GN=cog5 PE=3 SV=1
Length = 898
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 48 ALKVTRLRIAPSSRSHCYRQGGGALNTRMNL-FDRLARVVKSYANAILSSFEDPEKI--- 103
ALKV+ + ++ ++ + C R+ G L + +D L ++ + L D K+
Sbjct: 79 ALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKE--LDQLTDTLKLGVS 136
Query: 104 -LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE--DWYRKAQLALQKGEED 160
LE+++ M +D+ + + KR+++ C+ + +K + LQ G D
Sbjct: 137 NLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRD 196
Query: 161 LAREA-------LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213
L++ A L ++ S N + +Q+ K + +++ + L + E +++ D
Sbjct: 197 LSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDV 256
Query: 214 LKARAQSAKFVFPLSLLEFPVFS 236
A S + +++L V+S
Sbjct: 257 ----ANSLQVFHNMTILNEKVYS 275
>sp|Q9K8A0|MUTS2_BACHD MutS2 protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=mutS2 PE=3 SV=1
Length = 785
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160
EKI+EQA +++D ++ A + SQK E+ + AE+A ++ + +L LQK +D
Sbjct: 502 EKIIEQAKAHIDEDASQVESMIASLEQSQKSAESDWEEAEKALQEA-EQLRLDLQKKLDD 560
Query: 161 LARE 164
L +E
Sbjct: 561 LEKE 564
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
Length = 7389
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 33 VKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALN---TRMNLFDRLAR----V 85
+K P N GV + I+P+ + GG LN T N D LA
Sbjct: 4349 LKAPEIHKASNSGVSLCNLLSALISPAKAIAAAKSGGVILNGEGTDTNTQDFLANKGLTS 4408
Query: 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139
+K I S+ED +L+ ++E+N L K+++A + A + LE K A
Sbjct: 4409 IKKDMTDISHSYEDLGLLLKDKIVELNTKLSKLQKAQEESSAMMQWLEKMNKTA 4462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,114,241
Number of Sequences: 539616
Number of extensions: 2558546
Number of successful extensions: 17816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 376
Number of HSP's that attempted gapping in prelim test: 17412
Number of HSP's gapped (non-prelim): 832
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)