Query 025526
Match_columns 251
No_of_seqs 152 out of 816
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 100.0 1.2E-38 2.6E-43 281.7 25.9 171 76-246 1-171 (222)
2 TIGR02977 phageshock_pspA phag 100.0 2.4E-37 5.1E-42 272.5 26.1 172 76-247 1-172 (219)
3 COG1842 PspA Phage shock prote 100.0 1.1E-35 2.4E-40 263.0 25.8 171 76-246 1-171 (225)
4 PF04012 PspA_IM30: PspA/IM30 100.0 1.4E-35 3E-40 260.2 25.7 171 77-247 1-171 (221)
5 PF03357 Snf7: Snf7; InterPro 97.3 0.0084 1.8E-07 49.8 13.6 115 121-246 2-116 (171)
6 PTZ00446 vacuolar sorting prot 97.1 0.066 1.4E-06 46.8 16.8 74 123-196 30-103 (191)
7 PF04012 PspA_IM30: PspA/IM30 97.1 0.18 3.8E-06 44.2 19.7 136 101-245 32-172 (221)
8 PRK10698 phage shock protein P 96.8 0.2 4.2E-06 44.6 18.1 134 104-246 36-174 (222)
9 PF08317 Spc7: Spc7 kinetochor 96.8 0.19 4.2E-06 46.9 18.5 120 102-222 145-264 (325)
10 PRK09039 hypothetical protein; 96.6 0.41 9E-06 45.2 19.2 52 173-224 136-187 (343)
11 TIGR02977 phageshock_pspA phag 96.4 0.57 1.2E-05 41.3 18.3 129 107-244 39-172 (219)
12 PRK09039 hypothetical protein; 96.4 0.56 1.2E-05 44.4 18.8 54 164-217 134-187 (343)
13 PF08317 Spc7: Spc7 kinetochor 96.2 0.55 1.2E-05 43.9 18.0 114 101-215 151-264 (325)
14 PRK04863 mukB cell division pr 96.1 1.1 2.3E-05 50.2 21.8 114 101-215 282-396 (1486)
15 COG1842 PspA Phage shock prote 96.1 0.97 2.1E-05 40.5 18.5 55 175-229 93-147 (225)
16 PRK11637 AmiB activator; Provi 96.1 1.1 2.4E-05 43.2 19.8 40 104-143 80-119 (428)
17 PF00261 Tropomyosin: Tropomyo 95.5 1.7 3.6E-05 38.8 18.4 127 104-232 104-232 (237)
18 smart00787 Spc7 Spc7 kinetocho 95.5 2.1 4.6E-05 40.1 18.4 112 103-222 148-259 (312)
19 KOG2911 Uncharacterized conser 95.4 0.78 1.7E-05 44.7 15.3 79 115-193 228-306 (439)
20 PF06008 Laminin_I: Laminin Do 95.2 2.3 5E-05 38.4 17.7 155 65-222 72-240 (264)
21 smart00787 Spc7 Spc7 kinetocho 95.0 3.1 6.6E-05 39.0 17.9 35 175-209 226-260 (312)
22 KOG0963 Transcription factor/C 95.0 2.4 5.2E-05 43.0 18.0 135 72-210 86-225 (629)
23 PRK11637 AmiB activator; Provi 95.0 3.3 7.2E-05 39.9 18.5 43 102-144 85-127 (428)
24 COG4372 Uncharacterized protei 94.9 3.9 8.5E-05 39.6 20.4 50 102-151 119-168 (499)
25 TIGR01843 type_I_hlyD type I s 94.8 3.3 7.2E-05 38.8 17.7 11 43-53 51-61 (423)
26 KOG0971 Microtubule-associated 94.8 5.9 0.00013 42.2 20.4 105 94-204 245-355 (1243)
27 PRK02224 chromosome segregatio 94.8 3.9 8.4E-05 42.7 19.7 32 115-146 208-239 (880)
28 KOG0994 Extracellular matrix g 94.6 1.6 3.5E-05 47.3 16.2 111 102-212 1587-1699(1758)
29 KOG0804 Cytoplasmic Zn-finger 94.5 2.3 5E-05 41.7 15.9 120 99-219 332-452 (493)
30 TIGR00606 rad50 rad50. This fa 94.5 2.6 5.7E-05 46.4 18.3 65 165-229 879-945 (1311)
31 PF10168 Nup88: Nuclear pore c 94.5 2.9 6.2E-05 43.5 17.6 146 77-223 504-667 (717)
32 TIGR02168 SMC_prok_B chromosom 94.5 3.8 8.3E-05 43.3 19.0 14 197-210 463-476 (1179)
33 TIGR03319 YmdA_YtgF conserved 94.5 3 6.6E-05 41.6 17.2 49 101-149 35-84 (514)
34 PF12718 Tropomyosin_1: Tropom 94.4 2.5 5.5E-05 35.1 18.9 64 86-153 5-68 (143)
35 COG1579 Zn-ribbon protein, pos 94.2 4.2 9.1E-05 36.8 19.6 129 89-217 14-146 (239)
36 KOG0977 Nuclear envelope prote 94.1 3.3 7.2E-05 41.7 16.6 99 114-212 93-193 (546)
37 PRK10884 SH3 domain-containing 94.1 2.7 6E-05 37.1 14.4 60 175-234 119-178 (206)
38 PF00261 Tropomyosin: Tropomyo 93.9 4.4 9.5E-05 36.1 19.5 116 102-222 81-196 (237)
39 PRK04863 mukB cell division pr 93.9 3.4 7.3E-05 46.3 17.7 46 102-147 988-1033(1486)
40 KOG0996 Structural maintenance 93.9 4.7 0.0001 43.8 17.8 46 104-149 804-849 (1293)
41 COG1382 GimC Prefoldin, chaper 93.8 3.1 6.6E-05 33.9 13.4 99 107-212 7-108 (119)
42 KOG0804 Cytoplasmic Zn-finger 93.7 2.6 5.6E-05 41.4 14.5 98 104-202 352-449 (493)
43 PF13851 GAS: Growth-arrest sp 93.7 4.4 9.6E-05 35.5 18.2 121 80-202 8-128 (201)
44 PTZ00464 SNF-7-like protein; P 93.7 4.7 0.0001 35.7 15.7 37 158-194 59-95 (211)
45 PRK02224 chromosome segregatio 93.6 11 0.00023 39.5 20.7 45 163-207 649-693 (880)
46 COG4942 Membrane-bound metallo 93.6 7.8 0.00017 37.9 20.2 112 93-212 135-248 (420)
47 PF06120 Phage_HK97_TLTM: Tail 93.6 6.4 0.00014 36.8 18.8 105 110-215 71-175 (301)
48 PF13166 AAA_13: AAA domain 93.5 5.7 0.00012 40.4 17.6 65 171-235 407-472 (712)
49 TIGR02231 conserved hypothetic 93.5 1 2.2E-05 44.5 11.9 33 107-139 72-104 (525)
50 KOG0250 DNA repair protein RAD 93.4 14 0.00029 40.1 21.3 122 104-229 335-457 (1074)
51 KOG0971 Microtubule-associated 93.4 7.4 0.00016 41.5 17.9 115 68-185 359-473 (1243)
52 KOG0250 DNA repair protein RAD 93.2 8 0.00017 41.7 18.3 45 106-150 344-388 (1074)
53 PHA02562 46 endonuclease subun 93.0 5.4 0.00012 39.2 16.1 44 167-210 358-401 (562)
54 PF00038 Filament: Intermediat 93.0 7 0.00015 35.7 16.1 103 85-206 29-135 (312)
55 TIGR01005 eps_transp_fam exopo 92.9 5.5 0.00012 41.1 16.6 111 106-227 288-408 (754)
56 COG1196 Smc Chromosome segrega 92.9 8.5 0.00018 42.0 18.5 51 171-221 443-493 (1163)
57 PF10046 BLOC1_2: Biogenesis o 92.8 3.6 7.9E-05 31.9 13.1 95 78-206 4-98 (99)
58 PF05384 DegS: Sensor protein 92.6 6 0.00013 33.7 17.7 118 78-203 3-120 (159)
59 PRK03918 chromosome segregatio 92.3 16 0.00035 38.1 21.3 17 78-94 125-141 (880)
60 KOG3232 Vacuolar assembly/sort 92.1 5 0.00011 34.8 12.5 50 118-167 7-56 (203)
61 TIGR03017 EpsF chain length de 91.7 11 0.00023 36.2 16.0 33 195-227 342-374 (444)
62 KOG2910 Uncharacterized conser 91.7 8.8 0.00019 33.8 17.8 70 125-194 21-90 (209)
63 TIGR03007 pepcterm_ChnLen poly 91.7 8 0.00017 37.7 15.3 117 98-216 131-268 (498)
64 PF15619 Lebercilin: Ciliary p 91.7 8.6 0.00019 33.6 18.5 114 81-198 36-149 (194)
65 PF09726 Macoilin: Transmembra 91.6 14 0.00031 38.3 17.5 54 97-150 451-511 (697)
66 PF15290 Syntaphilin: Golgi-lo 91.5 1.1 2.4E-05 41.4 8.3 33 105-137 67-99 (305)
67 PF12325 TMF_TATA_bd: TATA ele 91.5 6.6 0.00014 31.9 15.0 89 104-208 21-109 (120)
68 TIGR01000 bacteriocin_acc bact 91.3 15 0.00032 35.7 17.9 28 124-151 169-196 (457)
69 KOG0994 Extracellular matrix g 91.3 17 0.00038 39.9 17.7 67 84-150 1559-1628(1758)
70 TIGR02680 conserved hypothetic 91.2 28 0.00062 38.8 20.3 46 172-217 338-383 (1353)
71 PF03148 Tektin: Tektin family 91.0 15 0.00033 35.2 17.5 128 79-206 224-363 (384)
72 PF10168 Nup88: Nuclear pore c 91.0 7.3 0.00016 40.5 14.8 79 77-155 539-621 (717)
73 TIGR03752 conj_TIGR03752 integ 90.6 4.2 9E-05 40.2 11.9 53 107-159 60-112 (472)
74 COG3883 Uncharacterized protei 90.6 14 0.0003 34.0 20.2 59 100-158 53-115 (265)
75 PF07888 CALCOCO1: Calcium bin 90.6 19 0.00042 36.4 16.7 28 32-59 56-85 (546)
76 PF12128 DUF3584: Protein of u 90.5 29 0.00063 38.2 19.5 59 101-159 623-681 (1201)
77 PF09726 Macoilin: Transmembra 90.4 25 0.00053 36.6 18.9 59 96-154 422-480 (697)
78 PF05816 TelA: Toxic anion res 90.1 17 0.00036 34.2 15.9 68 76-143 72-139 (333)
79 PRK04778 septation ring format 90.0 23 0.00049 35.7 18.0 42 100-141 283-324 (569)
80 PF09325 Vps5: Vps5 C terminal 90.0 12 0.00026 32.4 17.5 67 76-146 2-71 (236)
81 PF05266 DUF724: Protein of un 90.0 12 0.00027 32.5 16.7 33 68-107 42-74 (190)
82 PF00769 ERM: Ezrin/radixin/mo 89.9 15 0.00032 33.2 18.5 52 102-153 8-59 (246)
83 KOG0161 Myosin class II heavy 89.7 44 0.00095 38.8 20.2 62 88-149 908-972 (1930)
84 CHL00118 atpG ATP synthase CF0 89.7 11 0.00023 31.4 14.0 55 99-153 45-100 (156)
85 PRK11281 hypothetical protein; 89.5 12 0.00026 41.0 15.3 47 86-133 41-90 (1113)
86 PRK08476 F0F1 ATP synthase sub 89.5 11 0.00023 31.1 13.9 45 102-146 34-78 (141)
87 PRK10476 multidrug resistance 89.4 17 0.00036 33.8 14.6 18 107-124 87-104 (346)
88 TIGR03007 pepcterm_ChnLen poly 89.4 22 0.00048 34.6 16.1 61 168-228 318-388 (498)
89 PF04111 APG6: Autophagy prote 89.4 15 0.00032 34.4 14.2 47 176-222 80-126 (314)
90 PF12718 Tropomyosin_1: Tropom 89.3 11 0.00025 31.2 16.8 59 92-150 14-72 (143)
91 PRK13454 F0F1 ATP synthase sub 89.1 13 0.00029 31.8 12.8 56 102-157 58-113 (181)
92 PRK09343 prefoldin subunit bet 89.1 10 0.00023 30.5 13.1 45 104-148 5-49 (121)
93 PF06785 UPF0242: Uncharacteri 89.0 19 0.00041 34.4 14.4 56 160-215 166-221 (401)
94 KOG0996 Structural maintenance 88.9 25 0.00055 38.5 16.8 94 119-217 934-1034(1293)
95 PRK03918 chromosome segregatio 88.9 32 0.0007 35.8 19.9 41 167-207 666-706 (880)
96 PF04156 IncA: IncA protein; 88.9 13 0.00029 31.4 15.0 24 107-130 89-112 (191)
97 PF03194 LUC7: LUC7 N_terminus 88.8 5.6 0.00012 36.2 10.7 87 101-187 85-176 (254)
98 PF11932 DUF3450: Protein of u 88.7 17 0.00037 32.5 13.7 74 174-249 77-157 (251)
99 PF10174 Cast: RIM-binding pro 88.7 22 0.00047 37.5 16.1 51 92-142 231-281 (775)
100 PF08614 ATG16: Autophagy prot 88.6 15 0.00032 31.7 13.0 110 103-217 71-180 (194)
101 PRK00409 recombination and DNA 88.6 17 0.00036 38.2 15.3 57 103-159 517-573 (782)
102 COG3883 Uncharacterized protei 88.6 17 0.00037 33.5 13.6 21 209-229 98-118 (265)
103 PRK07720 fliJ flagellar biosyn 88.5 12 0.00026 30.5 16.8 96 111-212 14-109 (146)
104 COG4942 Membrane-bound metallo 88.4 27 0.00058 34.3 19.0 50 99-148 59-108 (420)
105 TIGR00606 rad50 rad50. This fa 88.3 46 0.001 36.9 20.8 39 176-214 986-1024(1311)
106 KOG2685 Cystoskeletal protein 88.3 27 0.00058 34.1 15.3 126 81-206 253-390 (421)
107 PHA02562 46 endonuclease subun 88.2 28 0.0006 34.3 18.8 34 106-139 213-246 (562)
108 COG1579 Zn-ribbon protein, pos 88.2 20 0.00043 32.5 19.1 38 171-208 107-144 (239)
109 KOG4673 Transcription factor T 88.2 36 0.00079 35.5 17.7 138 77-215 474-632 (961)
110 PRK13729 conjugal transfer pil 88.0 2.2 4.8E-05 42.2 8.0 52 171-222 73-124 (475)
111 KOG0982 Centrosomal protein Nu 87.9 29 0.00063 34.2 15.3 97 121-217 244-347 (502)
112 KOG0249 LAR-interacting protei 87.9 9.8 0.00021 39.6 12.5 61 168-230 210-270 (916)
113 TIGR02971 heterocyst_DevB ABC 87.8 22 0.00047 32.5 15.5 17 39-55 20-36 (327)
114 PF05701 WEMBL: Weak chloropla 87.7 32 0.00069 34.4 19.6 127 100-226 303-438 (522)
115 COG4372 Uncharacterized protei 87.6 29 0.00064 33.8 18.7 43 102-144 91-133 (499)
116 PF06810 Phage_GP20: Phage min 87.3 11 0.00023 31.8 10.8 66 173-238 26-98 (155)
117 TIGR00998 8a0101 efflux pump m 87.3 23 0.0005 32.3 15.7 13 110-122 84-96 (334)
118 PF05667 DUF812: Protein of un 87.3 33 0.00071 35.1 16.1 36 105-140 327-362 (594)
119 COG1566 EmrA Multidrug resista 87.2 18 0.00039 34.6 13.4 39 110-148 88-126 (352)
120 PRK15136 multidrug efflux syst 87.0 23 0.00049 33.8 14.2 14 160-173 137-150 (390)
121 KOG0979 Structural maintenance 86.9 24 0.00052 38.1 15.1 107 109-218 184-292 (1072)
122 PRK12704 phosphodiesterase; Pr 86.7 37 0.0008 34.0 20.9 50 100-149 40-90 (520)
123 KOG0980 Actin-binding protein 86.6 40 0.00087 36.0 16.3 65 86-150 436-503 (980)
124 PRK09174 F0F1 ATP synthase sub 86.5 22 0.00047 31.3 14.0 56 99-154 76-132 (204)
125 PRK10884 SH3 domain-containing 86.5 22 0.00048 31.4 13.1 19 108-126 95-113 (206)
126 KOG0161 Myosin class II heavy 86.3 73 0.0016 37.1 20.5 52 167-218 1491-1542(1930)
127 KOG0249 LAR-interacting protei 86.1 48 0.001 34.8 17.0 47 163-209 212-258 (916)
128 PF00038 Filament: Intermediat 86.0 27 0.00058 31.8 19.1 115 86-208 174-289 (312)
129 TIGR03545 conserved hypothetic 86.0 13 0.00027 37.7 12.2 60 92-152 143-202 (555)
130 PF06637 PV-1: PV-1 protein (P 85.8 26 0.00056 34.0 13.4 30 165-194 347-376 (442)
131 KOG0976 Rho/Rac1-interacting s 85.5 55 0.0012 34.9 18.3 60 163-222 368-437 (1265)
132 smart00502 BBC B-Box C-termina 85.2 15 0.00032 28.1 14.5 98 104-204 5-102 (127)
133 KOG1029 Endocytic adaptor prot 85.2 56 0.0012 34.7 16.3 47 99-145 451-497 (1118)
134 PF04111 APG6: Autophagy prote 84.9 34 0.00073 32.0 14.6 13 130-142 67-79 (314)
135 PF00769 ERM: Ezrin/radixin/mo 84.7 30 0.00065 31.2 15.3 101 106-211 26-126 (246)
136 KOG1003 Actin filament-coating 84.7 28 0.0006 30.8 14.9 94 101-213 104-197 (205)
137 PRK00846 hypothetical protein; 84.7 11 0.00023 28.4 8.4 54 169-222 8-61 (77)
138 PRK05689 fliJ flagellar biosyn 84.7 20 0.00043 29.2 16.6 96 110-211 13-108 (147)
139 PLN02718 Probable galacturonos 84.7 7.9 0.00017 39.5 10.0 110 98-211 157-266 (603)
140 TIGR01010 BexC_CtrB_KpsE polys 84.5 35 0.00077 31.9 20.5 86 98-185 140-232 (362)
141 smart00685 DM14 Repeats in fly 84.4 5.5 0.00012 28.5 6.5 44 137-180 2-45 (59)
142 KOG0964 Structural maintenance 84.2 47 0.001 36.0 15.6 51 166-216 327-377 (1200)
143 PF10186 Atg14: UV radiation r 84.1 30 0.00066 30.8 16.9 21 193-213 117-137 (302)
144 PF04102 SlyX: SlyX; InterPro 84.0 8.7 0.00019 27.9 7.6 48 173-220 3-50 (69)
145 PRK04778 septation ring format 83.7 52 0.0011 33.2 19.0 49 164-212 380-428 (569)
146 PF07888 CALCOCO1: Calcium bin 83.7 53 0.0012 33.3 18.5 11 84-94 139-149 (546)
147 KOG1029 Endocytic adaptor prot 83.6 32 0.0007 36.4 13.9 8 103-110 336-343 (1118)
148 cd00632 Prefoldin_beta Prefold 83.6 19 0.0004 28.0 13.0 96 112-214 5-103 (105)
149 TIGR02231 conserved hypothetic 83.5 16 0.00034 36.2 11.6 35 101-135 73-107 (525)
150 TIGR02473 flagell_FliJ flagell 83.3 21 0.00046 28.4 20.0 95 108-208 8-102 (141)
151 KOG0288 WD40 repeat protein Ti 83.3 48 0.001 32.5 16.7 127 104-235 11-137 (459)
152 TIGR01005 eps_transp_fam exopo 83.2 60 0.0013 33.5 18.8 25 101-125 196-220 (754)
153 PF12761 End3: Actin cytoskele 83.2 24 0.00051 31.1 11.2 24 101-124 98-121 (195)
154 TIGR02338 gimC_beta prefoldin, 83.1 20 0.00044 28.1 13.8 100 108-214 5-107 (110)
155 PF12128 DUF3584: Protein of u 83.1 79 0.0017 34.9 20.2 46 105-150 634-679 (1201)
156 KOG1656 Protein involved in gl 83.1 33 0.00073 30.5 13.8 37 158-194 59-95 (221)
157 PRK15422 septal ring assembly 83.0 18 0.00038 27.4 8.9 61 96-156 15-75 (79)
158 KOG0933 Structural maintenance 83.0 76 0.0017 34.6 19.4 71 98-168 243-313 (1174)
159 PF05529 Bap31: B-cell recepto 82.9 16 0.00035 31.3 10.1 73 127-203 118-190 (192)
160 PRK00736 hypothetical protein; 82.5 12 0.00026 27.3 7.8 49 172-220 3-51 (68)
161 KOG0980 Actin-binding protein 82.3 75 0.0016 34.0 18.3 34 117-150 390-426 (980)
162 PF13094 CENP-Q: CENP-Q, a CEN 82.2 17 0.00037 30.2 9.8 49 110-158 45-93 (160)
163 PRK04406 hypothetical protein; 82.2 16 0.00034 27.2 8.4 50 171-220 8-57 (75)
164 PF15070 GOLGA2L5: Putative go 82.0 54 0.0012 33.7 14.9 45 100-144 23-67 (617)
165 PRK03947 prefoldin subunit alp 81.9 26 0.00056 28.4 14.5 43 105-147 5-47 (140)
166 KOG0933 Structural maintenance 81.9 84 0.0018 34.3 19.4 45 173-217 814-858 (1174)
167 PF15112 DUF4559: Domain of un 81.8 42 0.00092 31.5 12.9 112 99-212 182-305 (307)
168 PRK00295 hypothetical protein; 81.7 17 0.00037 26.4 8.3 48 173-220 4-51 (68)
169 PRK04325 hypothetical protein; 81.6 16 0.00034 27.1 8.3 50 171-220 6-55 (74)
170 COG3206 GumC Uncharacterized p 81.2 55 0.0012 31.7 16.0 119 103-225 282-403 (458)
171 PF05335 DUF745: Protein of un 81.2 37 0.0008 29.7 18.8 117 102-225 70-186 (188)
172 PLN02829 Probable galacturonos 81.1 12 0.00027 38.3 9.8 107 101-211 178-284 (639)
173 PRK11281 hypothetical protein; 81.1 93 0.002 34.3 18.6 41 102-142 124-164 (1113)
174 PF09787 Golgin_A5: Golgin sub 80.7 63 0.0014 32.1 17.1 39 172-210 205-243 (511)
175 KOG0995 Centromere-associated 80.5 71 0.0015 32.5 20.3 62 101-163 261-322 (581)
176 PRK14475 F0F1 ATP synthase sub 80.5 33 0.00072 28.8 14.0 106 78-185 31-139 (167)
177 PF05103 DivIVA: DivIVA protei 80.5 0.51 1.1E-05 37.6 -0.1 50 104-153 23-72 (131)
178 PRK02793 phi X174 lysis protei 80.4 18 0.00038 26.6 8.1 49 172-220 6-54 (72)
179 COG2433 Uncharacterized conser 80.3 46 0.00099 34.2 13.4 28 119-146 344-371 (652)
180 PF07743 HSCB_C: HSCB C-termin 80.3 20 0.00043 26.1 9.0 76 98-180 2-77 (78)
181 TIGR03017 EpsF chain length de 80.2 56 0.0012 31.2 14.0 118 100-217 248-371 (444)
182 PF05103 DivIVA: DivIVA protei 80.2 1.2 2.5E-05 35.5 1.9 64 89-152 22-85 (131)
183 PF00015 MCPsignal: Methyl-acc 79.6 35 0.00077 28.5 12.4 44 75-118 69-112 (213)
184 PRK02119 hypothetical protein; 79.6 19 0.00041 26.6 8.1 51 170-220 5-55 (73)
185 PRK06569 F0F1 ATP synthase sub 79.4 38 0.00082 28.7 13.8 59 110-175 45-103 (155)
186 PF10267 Tmemb_cc2: Predicted 79.4 64 0.0014 31.4 18.0 17 233-249 333-349 (395)
187 PF14662 CCDC155: Coiled-coil 79.3 44 0.00095 29.4 16.5 58 90-151 27-84 (193)
188 PF08614 ATG16: Autophagy prot 79.3 20 0.00042 30.9 9.4 39 177-215 147-185 (194)
189 COG3074 Uncharacterized protei 79.2 23 0.0005 26.3 8.2 62 95-156 14-75 (79)
190 TIGR01069 mutS2 MutS2 family p 79.1 56 0.0012 34.4 14.2 14 107-120 516-529 (771)
191 PF08826 DMPK_coil: DMPK coile 78.8 22 0.00047 25.6 8.6 44 172-215 16-59 (61)
192 PRK10929 putative mechanosensi 78.7 1E+02 0.0022 34.0 16.4 18 104-121 70-87 (1109)
193 KOG0978 E3 ubiquitin ligase in 78.6 90 0.002 32.6 16.4 112 104-215 494-621 (698)
194 cd07666 BAR_SNX7 The Bin/Amphi 78.6 52 0.0011 29.9 22.0 70 77-146 30-101 (243)
195 PF09304 Cortex-I_coil: Cortex 78.5 32 0.0007 27.5 14.4 55 166-220 36-90 (107)
196 COG2433 Uncharacterized conser 78.3 63 0.0014 33.2 13.7 29 173-201 480-508 (652)
197 KOG2391 Vacuolar sorting prote 78.0 66 0.0014 30.8 20.8 109 32-157 169-283 (365)
198 PRK11519 tyrosine kinase; Prov 77.9 91 0.002 32.3 16.5 14 79-92 207-220 (719)
199 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.7 36 0.00078 27.5 16.4 18 200-217 103-120 (132)
200 PF02050 FliJ: Flagellar FliJ 77.5 28 0.0006 26.2 16.7 87 117-210 2-88 (123)
201 PF06120 Phage_HK97_TLTM: Tail 77.4 64 0.0014 30.3 14.2 129 76-205 37-172 (301)
202 PF09789 DUF2353: Uncharacteri 77.4 66 0.0014 30.4 14.3 117 102-234 68-184 (319)
203 PLN02742 Probable galacturonos 77.1 35 0.00077 34.4 11.5 105 104-211 72-177 (534)
204 TIGR03185 DNA_S_dndD DNA sulfu 77.0 91 0.002 31.8 18.5 49 161-209 422-470 (650)
205 KOG3230 Vacuolar assembly/sort 77.0 53 0.0012 29.2 16.0 59 93-165 3-61 (224)
206 KOG0796 Spliceosome subunit [R 76.9 64 0.0014 30.5 12.5 75 100-174 84-162 (319)
207 cd07643 I-BAR_IMD_MIM Inverse 76.8 52 0.0011 29.7 11.5 72 78-152 72-147 (231)
208 PF04102 SlyX: SlyX; InterPro 76.8 17 0.00037 26.3 7.1 39 170-208 14-52 (69)
209 TIGR01069 mutS2 MutS2 family p 76.7 1E+02 0.0023 32.4 15.6 43 104-146 520-562 (771)
210 PF09730 BicD: Microtubule-ass 76.7 1E+02 0.0022 32.3 19.7 124 92-215 20-148 (717)
211 PF06476 DUF1090: Protein of u 76.7 38 0.00081 27.2 9.9 52 158-211 61-112 (115)
212 PF09486 HrpB7: Bacterial type 76.5 47 0.001 28.3 19.0 109 105-217 14-122 (158)
213 COG0419 SbcC ATPase involved i 76.5 1.1E+02 0.0024 32.5 18.5 26 125-150 313-338 (908)
214 TIGR02680 conserved hypothetic 76.4 1.4E+02 0.003 33.6 18.7 28 186-213 887-914 (1353)
215 PF10883 DUF2681: Protein of u 76.1 23 0.0005 27.2 7.9 54 190-243 25-78 (87)
216 PF06156 DUF972: Protein of un 76.0 12 0.00026 29.7 6.6 63 102-164 11-81 (107)
217 PLN02910 polygalacturonate 4-a 76.0 23 0.0005 36.4 10.0 108 100-211 191-298 (657)
218 PRK08476 F0F1 ATP synthase sub 75.9 43 0.00092 27.5 15.8 46 78-123 28-76 (141)
219 PF02403 Seryl_tRNA_N: Seryl-t 75.9 34 0.00074 26.3 9.4 33 125-157 34-66 (108)
220 PRK00295 hypothetical protein; 75.8 28 0.0006 25.3 7.9 38 170-207 15-52 (68)
221 PRK06231 F0F1 ATP synthase sub 75.6 55 0.0012 28.6 14.0 55 99-153 71-126 (205)
222 PRK09841 cryptic autophosphory 75.6 1.1E+02 0.0023 31.9 19.6 18 163-180 307-324 (726)
223 PF13949 ALIX_LYPXL_bnd: ALIX 75.6 61 0.0013 29.1 13.1 77 74-153 7-96 (296)
224 KOG4674 Uncharacterized conser 75.3 1.7E+02 0.0036 34.0 20.2 119 106-224 1250-1382(1822)
225 PTZ00464 SNF-7-like protein; P 75.2 59 0.0013 28.8 12.2 26 124-149 65-90 (211)
226 PRK01773 hscB co-chaperone Hsc 75.2 52 0.0011 28.2 11.1 78 97-181 88-165 (173)
227 PF06008 Laminin_I: Laminin Do 75.0 63 0.0014 29.0 16.9 48 102-149 90-142 (264)
228 cd07664 BAR_SNX2 The Bin/Amphi 74.7 64 0.0014 29.0 17.2 65 78-146 2-69 (234)
229 PF15619 Lebercilin: Ciliary p 74.7 58 0.0013 28.4 14.3 28 179-206 162-189 (194)
230 TIGR01144 ATP_synt_b ATP synth 74.4 45 0.00097 27.0 14.0 10 112-121 32-41 (147)
231 KOG0977 Nuclear envelope prote 74.4 1E+02 0.0023 31.2 16.8 116 100-215 86-217 (546)
232 PF08172 CASP_C: CASP C termin 74.3 44 0.00094 30.4 10.5 42 175-216 80-121 (248)
233 PRK02793 phi X174 lysis protei 74.3 30 0.00066 25.4 7.9 46 168-213 9-54 (72)
234 PF10191 COG7: Golgi complex c 74.2 1.2E+02 0.0026 31.9 16.3 98 104-201 54-164 (766)
235 TIGR00293 prefoldin, archaeal 74.0 42 0.00091 26.5 9.7 28 115-142 8-35 (126)
236 PF05010 TACC: Transforming ac 73.9 64 0.0014 28.6 17.1 51 101-151 50-100 (207)
237 PF05377 FlaC_arch: Flagella a 73.7 16 0.00034 25.8 5.9 39 169-207 2-40 (55)
238 KOG0018 Structural maintenance 73.6 1.5E+02 0.0032 32.6 17.3 70 163-232 398-472 (1141)
239 PRK07352 F0F1 ATP synthase sub 73.6 54 0.0012 27.6 19.6 53 99-151 42-95 (174)
240 PF13514 AAA_27: AAA domain 73.5 1.4E+02 0.0031 32.5 18.7 31 125-155 741-771 (1111)
241 PRK14473 F0F1 ATP synthase sub 73.4 52 0.0011 27.3 14.0 55 102-156 35-89 (164)
242 PF04728 LPP: Lipoprotein leuc 73.3 30 0.00064 24.5 7.2 45 184-230 6-50 (56)
243 KOG1103 Predicted coiled-coil 73.2 86 0.0019 30.4 12.5 119 98-224 85-209 (561)
244 PF05622 HOOK: HOOK protein; 73.2 1.1 2.4E-05 46.1 0.0 83 103-185 243-326 (713)
245 PRK04406 hypothetical protein; 73.1 33 0.0007 25.5 7.9 34 173-206 24-57 (75)
246 PF03962 Mnd1: Mnd1 family; I 72.8 62 0.0014 28.0 13.4 10 82-91 32-41 (188)
247 PF07889 DUF1664: Protein of u 72.8 51 0.0011 27.0 10.3 33 175-207 90-122 (126)
248 PF13094 CENP-Q: CENP-Q, a CEN 72.7 39 0.00084 28.1 9.2 55 163-217 23-77 (160)
249 PRK13461 F0F1 ATP synthase sub 72.7 53 0.0012 27.1 14.0 106 78-185 26-134 (159)
250 KOG4438 Centromere-associated 72.2 1E+02 0.0023 30.3 15.8 58 102-159 148-205 (446)
251 PRK14472 F0F1 ATP synthase sub 72.2 59 0.0013 27.4 14.1 20 104-123 68-87 (175)
252 COG1340 Uncharacterized archae 71.9 88 0.0019 29.3 21.3 142 76-224 110-257 (294)
253 PRK15178 Vi polysaccharide exp 71.9 1.1E+02 0.0023 30.3 15.1 129 80-211 184-337 (434)
254 PRK11020 hypothetical protein; 71.8 52 0.0011 26.6 9.7 53 132-184 3-55 (118)
255 PRK10803 tol-pal system protei 71.6 19 0.00041 32.8 7.6 43 171-213 58-100 (263)
256 PF06005 DUF904: Protein of un 71.6 38 0.00083 25.0 8.6 28 127-154 39-66 (72)
257 KOG4403 Cell surface glycoprot 71.2 72 0.0016 31.6 11.6 56 83-139 237-292 (575)
258 PF10805 DUF2730: Protein of u 71.1 48 0.001 26.0 9.0 40 179-218 47-88 (106)
259 PF10146 zf-C4H2: Zinc finger- 71.0 79 0.0017 28.4 16.0 32 114-145 12-43 (230)
260 PRK02119 hypothetical protein; 70.9 39 0.00086 24.9 7.9 36 172-207 21-56 (73)
261 PF05276 SH3BP5: SH3 domain-bi 70.8 82 0.0018 28.5 16.2 105 98-218 115-221 (239)
262 PF15397 DUF4618: Domain of un 70.8 87 0.0019 28.8 15.8 45 83-127 65-109 (258)
263 PRK00736 hypothetical protein; 70.7 38 0.00082 24.6 7.9 38 170-207 15-52 (68)
264 PRK00409 recombination and DNA 70.7 1.5E+02 0.0032 31.4 16.8 41 100-140 500-540 (782)
265 PRK04325 hypothetical protein; 70.6 40 0.00087 24.9 7.9 38 170-207 19-56 (74)
266 COG1730 GIM5 Predicted prefold 70.6 29 0.00064 29.1 7.9 53 170-222 90-142 (145)
267 PF12777 MT: Microtubule-bindi 70.4 64 0.0014 30.3 11.2 33 162-194 70-102 (344)
268 PRK12472 hypothetical protein; 70.4 1.2E+02 0.0027 30.4 15.9 102 110-214 208-309 (508)
269 COG1566 EmrA Multidrug resista 70.2 1E+02 0.0023 29.4 13.0 16 138-153 128-143 (352)
270 PF08172 CASP_C: CASP C termin 70.0 28 0.00061 31.6 8.3 107 109-215 2-134 (248)
271 PRK11519 tyrosine kinase; Prov 69.8 1.4E+02 0.0031 30.9 20.0 11 212-222 387-397 (719)
272 PRK13729 conjugal transfer pil 69.7 26 0.00055 34.9 8.5 44 171-214 80-123 (475)
273 PF00430 ATP-synt_B: ATP synth 69.7 24 0.00051 27.8 7.0 106 78-185 20-128 (132)
274 KOG1003 Actin filament-coating 69.5 81 0.0018 27.9 15.3 121 95-215 21-157 (205)
275 PF04849 HAP1_N: HAP1 N-termin 69.4 1E+02 0.0022 29.0 17.0 38 102-139 163-200 (306)
276 PF10234 Cluap1: Clusterin-ass 69.4 95 0.0021 28.7 15.6 58 101-159 164-221 (267)
277 PF11180 DUF2968: Protein of u 69.3 80 0.0017 27.8 14.6 113 80-204 72-184 (192)
278 TIGR03752 conj_TIGR03752 integ 69.3 71 0.0015 31.8 11.4 48 102-149 62-109 (472)
279 PRK14471 F0F1 ATP synthase sub 69.1 66 0.0014 26.7 14.0 106 78-185 29-137 (164)
280 COG2882 FliJ Flagellar biosynt 69.0 69 0.0015 27.0 18.9 98 112-215 15-112 (148)
281 PRK05431 seryl-tRNA synthetase 68.8 75 0.0016 30.9 11.5 35 122-156 30-64 (425)
282 PF10174 Cast: RIM-binding pro 68.6 1.6E+02 0.0036 31.1 17.3 108 107-219 316-423 (775)
283 PRK15136 multidrug efflux syst 68.5 1.1E+02 0.0024 29.1 13.6 28 175-202 159-186 (390)
284 PF10498 IFT57: Intra-flagella 68.5 1.1E+02 0.0025 29.2 16.3 114 116-239 216-329 (359)
285 PRK01156 chromosome segregatio 68.0 1.7E+02 0.0036 30.9 20.9 50 166-215 680-729 (895)
286 PF09755 DUF2046: Uncharacteri 67.9 1.1E+02 0.0024 28.9 17.2 36 168-203 114-150 (310)
287 PF10186 Atg14: UV radiation r 67.8 89 0.0019 27.8 17.8 20 186-205 124-143 (302)
288 KOG1853 LIS1-interacting prote 67.6 1.1E+02 0.0023 28.5 15.7 45 100-147 21-65 (333)
289 PF09730 BicD: Microtubule-ass 67.3 1.7E+02 0.0037 30.8 21.8 67 76-142 256-322 (717)
290 PF12777 MT: Microtubule-bindi 67.3 38 0.00083 31.8 8.9 56 166-221 262-317 (344)
291 PF05667 DUF812: Protein of un 67.3 1.5E+02 0.0033 30.3 21.6 85 101-186 330-420 (594)
292 PRK03947 prefoldin subunit alp 67.2 66 0.0014 26.0 14.5 41 175-215 95-135 (140)
293 TIGR00414 serS seryl-tRNA synt 67.2 1.1E+02 0.0023 29.8 12.2 14 135-148 45-58 (418)
294 PRK10803 tol-pal system protei 67.1 34 0.00073 31.1 8.3 44 176-219 56-99 (263)
295 PRK11578 macrolide transporter 67.1 1.1E+02 0.0024 28.6 12.0 16 107-122 100-115 (370)
296 PF15254 CCDC14: Coiled-coil d 67.0 1.8E+02 0.0039 30.9 15.0 111 102-212 404-525 (861)
297 cd07595 BAR_RhoGAP_Rich-like T 66.9 99 0.0021 27.9 12.5 32 176-207 200-231 (244)
298 COG2900 SlyX Uncharacterized p 66.8 51 0.0011 24.5 7.8 47 171-217 5-51 (72)
299 PF10211 Ax_dynein_light: Axon 66.8 85 0.0018 27.1 14.7 105 78-193 85-189 (189)
300 PF02183 HALZ: Homeobox associ 66.6 29 0.00063 23.3 5.8 36 173-208 4-39 (45)
301 KOG2751 Beclin-like protein [S 66.6 1.4E+02 0.003 29.5 13.0 12 78-89 118-129 (447)
302 PF14193 DUF4315: Domain of un 66.5 55 0.0012 24.9 8.4 57 190-247 3-60 (83)
303 KOG0946 ER-Golgi vesicle-tethe 66.4 1.6E+02 0.0035 31.5 13.6 30 124-153 748-777 (970)
304 CHL00019 atpF ATP synthase CF0 66.3 82 0.0018 26.8 13.9 51 102-152 51-101 (184)
305 PRK05759 F0F1 ATP synthase sub 66.2 71 0.0015 26.0 13.1 47 102-148 31-77 (156)
306 PRK00846 hypothetical protein; 66.1 54 0.0012 24.6 7.9 37 172-208 25-61 (77)
307 PRK12704 phosphodiesterase; Pr 65.8 1.5E+02 0.0033 29.7 16.9 11 232-242 148-158 (520)
308 PF14282 FlxA: FlxA-like prote 65.6 63 0.0014 25.3 8.5 21 195-215 51-71 (106)
309 TIGR02132 phaR_Bmeg polyhydrox 65.6 93 0.002 27.2 18.1 27 122-148 74-100 (189)
310 PF11559 ADIP: Afadin- and alp 65.5 74 0.0016 26.0 13.6 28 119-146 65-92 (151)
311 PRK09174 F0F1 ATP synthase sub 65.1 96 0.0021 27.2 15.7 50 78-127 74-126 (204)
312 PF10481 CENP-F_N: Cenp-F N-te 64.9 1.2E+02 0.0026 28.3 12.2 90 108-209 41-130 (307)
313 CHL00019 atpF ATP synthase CF0 64.5 89 0.0019 26.5 17.0 23 209-231 138-160 (184)
314 PRK13460 F0F1 ATP synthase sub 64.4 86 0.0019 26.4 13.1 52 102-153 43-94 (173)
315 PLN02939 transferase, transfer 64.3 1.8E+02 0.0039 31.7 14.0 75 102-185 267-342 (977)
316 PF01576 Myosin_tail_1: Myosin 64.3 2.2 4.8E-05 45.1 0.0 140 77-216 605-764 (859)
317 PF10212 TTKRSYEDQ: Predicted 64.1 1.7E+02 0.0036 29.6 14.3 31 178-208 484-514 (518)
318 PRK10807 paraquat-inducible pr 64.1 92 0.002 31.5 11.4 47 70-123 406-453 (547)
319 PLN02769 Probable galacturonos 64.1 56 0.0012 33.7 9.8 115 97-214 172-286 (629)
320 KOG4302 Microtubule-associated 64.0 1.2E+02 0.0027 31.4 12.3 111 90-200 23-136 (660)
321 cd07655 F-BAR_PACSIN The F-BAR 63.9 1.1E+02 0.0024 27.5 17.9 76 76-151 59-157 (258)
322 PRK15396 murein lipoprotein; P 63.8 53 0.0011 24.7 7.4 15 216-230 58-72 (78)
323 PRK14474 F0F1 ATP synthase sub 63.6 1.1E+02 0.0025 27.5 14.6 19 104-122 55-73 (250)
324 TIGR02894 DNA_bind_RsfA transc 63.2 69 0.0015 27.4 8.8 48 175-222 105-152 (161)
325 TIGR03321 alt_F1F0_F0_B altern 63.2 1.1E+02 0.0024 27.2 14.5 56 102-157 53-113 (246)
326 PRK00888 ftsB cell division pr 63.2 37 0.00079 26.7 6.8 46 107-152 28-73 (105)
327 PF04849 HAP1_N: HAP1 N-termin 62.8 1.4E+02 0.003 28.2 15.9 64 85-151 178-251 (306)
328 PRK12705 hypothetical protein; 62.7 1.8E+02 0.0038 29.3 16.4 20 130-149 66-85 (508)
329 PF02994 Transposase_22: L1 tr 62.4 35 0.00076 32.6 7.8 40 167-206 144-183 (370)
330 PRK06975 bifunctional uroporph 62.2 1.6E+02 0.0034 30.4 12.9 17 173-189 384-400 (656)
331 COG3334 Uncharacterized conser 62.0 1.1E+02 0.0024 26.9 11.6 68 176-246 72-143 (192)
332 PF14662 CCDC155: Coiled-coil 62.0 1.1E+02 0.0024 26.9 18.5 114 101-215 62-178 (193)
333 KOG0999 Microtubule-associated 61.7 2E+02 0.0043 29.6 15.6 154 71-224 72-230 (772)
334 CHL00118 atpG ATP synthase CF0 61.6 92 0.002 25.8 15.9 25 102-126 70-94 (156)
335 PRK06568 F0F1 ATP synthase sub 61.5 99 0.0021 26.1 13.9 50 102-151 31-80 (154)
336 COG4026 Uncharacterized protei 61.2 1.3E+02 0.0028 27.4 14.2 121 78-215 74-204 (290)
337 PF13863 DUF4200: Domain of un 61.1 79 0.0017 24.8 17.0 105 109-214 10-114 (126)
338 PF02183 HALZ: Homeobox associ 61.0 48 0.001 22.3 6.1 39 179-217 3-41 (45)
339 PF05701 WEMBL: Weak chloropla 60.9 1.8E+02 0.004 29.0 19.9 47 105-151 287-333 (522)
340 PRK13453 F0F1 ATP synthase sub 60.9 1E+02 0.0022 26.0 14.0 64 99-162 41-105 (173)
341 TIGR03321 alt_F1F0_F0_B altern 60.8 1.2E+02 0.0027 27.0 17.3 51 102-152 32-82 (246)
342 PF07851 TMPIT: TMPIT-like pro 60.7 1.2E+02 0.0027 28.8 10.9 17 131-147 8-24 (330)
343 cd07619 BAR_Rich2 The Bin/Amph 60.7 1.3E+02 0.0029 27.3 13.4 49 62-111 63-123 (248)
344 PF05335 DUF745: Protein of un 60.7 1.2E+02 0.0025 26.6 15.5 53 163-215 105-157 (188)
345 PF05557 MAD: Mitotic checkpoi 60.6 2.8 6.1E-05 43.3 0.0 40 102-141 89-128 (722)
346 PF06160 EzrA: Septation ring 60.5 1.9E+02 0.0042 29.1 16.2 87 87-173 77-203 (560)
347 PF04156 IncA: IncA protein; 60.3 1E+02 0.0022 25.9 17.3 37 172-208 128-164 (191)
348 PF15035 Rootletin: Ciliary ro 60.3 1.1E+02 0.0025 26.4 13.2 95 114-212 6-119 (182)
349 PRK14472 F0F1 ATP synthase sub 60.2 1E+02 0.0022 25.9 16.9 54 99-152 41-95 (175)
350 TIGR02449 conserved hypothetic 60.2 64 0.0014 23.5 8.1 45 178-222 4-48 (65)
351 KOG1656 Protein involved in gl 60.1 1.3E+02 0.0028 26.9 12.5 35 115-149 56-90 (221)
352 PF10779 XhlA: Haemolysin XhlA 60.0 63 0.0014 23.3 8.1 47 171-217 3-49 (71)
353 PF06818 Fez1: Fez1; InterPro 59.6 1.3E+02 0.0028 26.7 13.4 49 101-149 12-60 (202)
354 KOG1655 Protein involved in va 59.3 1.3E+02 0.0028 26.7 15.0 111 118-232 17-150 (218)
355 PRK00888 ftsB cell division pr 59.2 47 0.001 26.1 6.8 34 176-209 29-62 (105)
356 KOG4643 Uncharacterized coiled 58.8 2.8E+02 0.0061 30.5 17.9 51 165-215 276-328 (1195)
357 PRK07353 F0F1 ATP synthase sub 58.8 93 0.002 24.9 14.0 51 102-152 32-82 (140)
358 PF08336 P4Ha_N: Prolyl 4-Hydr 58.8 81 0.0018 25.4 8.3 63 177-246 4-66 (134)
359 PRK15178 Vi polysaccharide exp 58.7 1.9E+02 0.0042 28.5 13.0 46 78-123 220-266 (434)
360 COG0172 SerS Seryl-tRNA synthe 58.1 1.1E+02 0.0025 30.0 10.5 67 124-191 33-99 (429)
361 PF13779 DUF4175: Domain of un 58.1 2E+02 0.0044 30.7 13.0 36 140-175 537-572 (820)
362 PF05262 Borrelia_P83: Borreli 58.0 2.1E+02 0.0045 28.7 15.8 16 102-117 199-214 (489)
363 COG0419 SbcC ATPase involved i 57.6 2.6E+02 0.0057 29.7 18.5 24 102-125 325-348 (908)
364 KOG3229 Vacuolar sorting prote 57.3 1.4E+02 0.0031 26.7 13.4 73 129-201 27-99 (227)
365 PF06810 Phage_GP20: Phage min 57.2 1.2E+02 0.0025 25.5 10.3 45 104-148 4-48 (155)
366 cd07624 BAR_SNX7_30 The Bin/Am 57.2 1.3E+02 0.0028 26.0 19.2 51 98-148 12-63 (200)
367 PF09325 Vps5: Vps5 C terminal 57.1 1.3E+02 0.0028 25.9 16.5 66 121-186 122-189 (236)
368 PRK06569 F0F1 ATP synthase sub 57.0 1.2E+02 0.0026 25.7 14.8 86 78-166 31-120 (155)
369 PF10498 IFT57: Intra-flagella 56.9 1.9E+02 0.004 27.8 18.8 120 104-231 218-348 (359)
370 PLN03188 kinesin-12 family pro 56.9 3.3E+02 0.0071 30.7 18.7 52 107-158 1094-1152(1320)
371 PRK07352 F0F1 ATP synthase sub 56.9 1.2E+02 0.0026 25.5 14.0 30 125-154 62-91 (174)
372 COG3206 GumC Uncharacterized p 56.8 1.9E+02 0.0042 28.0 15.7 120 95-218 280-403 (458)
373 PF12325 TMF_TATA_bd: TATA ele 56.7 1.1E+02 0.0023 24.9 15.7 73 74-154 13-88 (120)
374 PRK00106 hypothetical protein; 56.7 2.3E+02 0.0049 28.8 20.7 12 231-242 162-173 (535)
375 PRK08475 F0F1 ATP synthase sub 56.7 1.2E+02 0.0026 25.5 12.0 94 78-171 43-144 (167)
376 PF07111 HCR: Alpha helical co 56.5 2.6E+02 0.0057 29.4 17.1 84 126-210 520-604 (739)
377 KOG2264 Exostosin EXT1L [Signa 56.4 46 0.001 34.2 7.5 18 25-42 13-32 (907)
378 PRK10929 putative mechanosensi 56.0 3.2E+02 0.007 30.3 17.9 25 221-245 299-323 (1109)
379 PF14915 CCDC144C: CCDC144C pr 55.9 1.8E+02 0.0039 27.4 16.3 101 111-215 4-104 (305)
380 PRK06231 F0F1 ATP synthase sub 55.7 1.4E+02 0.0031 26.0 16.6 17 104-120 98-114 (205)
381 PRK09841 cryptic autophosphory 55.6 2.6E+02 0.0056 29.0 18.7 27 199-225 374-400 (726)
382 PRK15030 multidrug efflux syst 55.5 92 0.002 29.6 9.4 17 111-127 101-117 (397)
383 PF15294 Leu_zip: Leucine zipp 55.3 1.8E+02 0.0039 27.1 14.2 104 101-210 127-230 (278)
384 COG2900 SlyX Uncharacterized p 55.2 64 0.0014 24.0 6.3 39 170-208 18-56 (72)
385 TIGR02894 DNA_bind_RsfA transc 54.8 1.4E+02 0.003 25.6 11.0 38 178-215 101-138 (161)
386 PF14346 DUF4398: Domain of un 54.6 94 0.002 23.7 11.0 30 142-171 44-73 (103)
387 PRK11578 macrolide transporter 54.6 1.5E+02 0.0032 27.7 10.5 19 110-128 96-114 (370)
388 PHA01750 hypothetical protein 54.2 46 0.001 24.5 5.4 33 180-212 41-73 (75)
389 PF05911 DUF869: Plant protein 54.0 3E+02 0.0064 29.3 15.2 154 87-245 605-767 (769)
390 PF08946 Osmo_CC: Osmosensory 53.9 31 0.00068 23.4 4.1 32 179-217 10-41 (46)
391 PF13747 DUF4164: Domain of un 53.8 98 0.0021 23.6 11.6 39 170-208 42-80 (89)
392 PF14942 Muted: Organelle biog 53.7 1.3E+02 0.0029 25.1 16.3 76 77-155 7-94 (145)
393 TIGR03319 YmdA_YtgF conserved 53.6 2.5E+02 0.0054 28.2 17.2 12 231-242 141-152 (514)
394 PF12329 TMF_DNA_bd: TATA elem 53.4 88 0.0019 23.0 9.0 34 175-208 13-46 (74)
395 PF13514 AAA_27: AAA domain 53.4 3.4E+02 0.0073 29.7 22.1 133 84-216 760-917 (1111)
396 PF05384 DegS: Sensor protein 53.4 1.4E+02 0.0031 25.4 16.7 110 91-207 5-117 (159)
397 KOG4196 bZIP transcription fac 52.9 83 0.0018 26.1 7.3 31 192-222 85-115 (135)
398 PRK13169 DNA replication intia 52.9 58 0.0013 26.1 6.3 65 99-163 8-77 (110)
399 PRK01356 hscB co-chaperone Hsc 52.8 1.4E+02 0.0031 25.2 10.4 74 98-181 87-160 (166)
400 KOG0976 Rho/Rac1-interacting s 52.6 3.3E+02 0.0072 29.4 19.8 41 170-210 361-401 (1265)
401 PF05008 V-SNARE: Vesicle tran 52.5 86 0.0019 22.6 9.2 71 79-149 1-76 (79)
402 PLN02678 seryl-tRNA synthetase 52.4 2.5E+02 0.0053 27.8 12.7 22 129-150 42-63 (448)
403 PF13815 Dzip-like_N: Iguana/D 52.4 96 0.0021 24.6 7.6 40 171-210 77-116 (118)
404 TIGR03794 NHPM_micro_HlyD NHPM 52.3 2.2E+02 0.0047 27.2 15.9 135 80-217 113-249 (421)
405 PF12709 Kinetocho_Slk19: Cent 52.1 1E+02 0.0022 23.7 7.3 45 169-216 40-84 (87)
406 KOG2662 Magnesium transporters 52.1 2.4E+02 0.0052 27.7 15.8 86 126-212 219-335 (414)
407 PF06160 EzrA: Septation ring 52.0 2.7E+02 0.0058 28.1 16.6 61 155-215 339-406 (560)
408 PF14362 DUF4407: Domain of un 51.9 1.9E+02 0.0041 26.3 16.8 70 121-190 136-212 (301)
409 KOG1937 Uncharacterized conser 51.4 2.6E+02 0.0057 27.9 13.2 33 187-219 388-420 (521)
410 COG4026 Uncharacterized protei 51.3 1.9E+02 0.0042 26.3 10.7 77 110-205 132-208 (290)
411 PF15556 Zwint: ZW10 interacto 51.2 1.8E+02 0.004 26.0 9.9 61 169-229 72-132 (252)
412 PF04380 BMFP: Membrane fusoge 51.2 99 0.0022 23.0 9.0 29 181-209 50-78 (79)
413 COG0711 AtpF F0F1-type ATP syn 50.9 1.5E+02 0.0032 24.8 14.8 113 78-190 27-158 (161)
414 PF10224 DUF2205: Predicted co 50.8 1.1E+02 0.0023 23.2 9.7 61 159-219 8-68 (80)
415 PF05478 Prominin: Prominin; 50.5 3.3E+02 0.0071 28.8 19.0 119 96-217 170-289 (806)
416 KOG4674 Uncharacterized conser 50.2 4.8E+02 0.01 30.6 20.2 139 77-220 24-168 (1822)
417 PF01576 Myosin_tail_1: Myosin 49.8 5.4 0.00012 42.2 0.0 139 75-217 230-371 (859)
418 PRK13455 F0F1 ATP synthase sub 49.8 1.6E+02 0.0035 24.9 18.8 52 101-152 53-104 (184)
419 PRK07737 fliD flagellar cappin 49.7 1.5E+02 0.0032 29.6 10.0 22 131-152 445-466 (501)
420 PRK10361 DNA recombination pro 49.7 2.8E+02 0.0061 27.7 19.6 85 110-194 64-160 (475)
421 KOG0979 Structural maintenance 49.7 3.9E+02 0.0084 29.3 14.7 20 102-121 205-224 (1072)
422 PF06156 DUF972: Protein of un 49.7 1.3E+02 0.0028 23.8 8.4 51 169-219 3-53 (107)
423 KOG4643 Uncharacterized coiled 49.7 4E+02 0.0086 29.4 17.7 47 102-148 411-457 (1195)
424 TIGR02338 gimC_beta prefoldin, 49.6 1.2E+02 0.0027 23.6 11.1 92 107-198 11-105 (110)
425 PRK14474 F0F1 ATP synthase sub 49.3 2E+02 0.0043 25.9 17.4 50 102-151 32-81 (250)
426 TIGR00714 hscB Fe-S protein as 49.2 1.6E+02 0.0034 24.7 10.9 77 97-180 74-150 (157)
427 KOG4196 bZIP transcription fac 48.9 93 0.002 25.8 7.0 23 95-118 22-44 (135)
428 PRK10246 exonuclease subunit S 48.9 3.9E+02 0.0085 29.1 17.0 153 74-229 177-331 (1047)
429 cd07665 BAR_SNX1 The Bin/Amphi 48.7 2E+02 0.0044 25.8 19.6 145 78-224 2-181 (234)
430 PF02841 GBP_C: Guanylate-bind 48.7 2.2E+02 0.0047 26.1 18.9 43 63-110 142-184 (297)
431 COG1340 Uncharacterized archae 48.6 2.4E+02 0.0051 26.5 18.2 118 111-233 156-273 (294)
432 KOG0964 Structural maintenance 48.5 4.1E+02 0.0089 29.3 16.2 107 102-209 226-342 (1200)
433 PRK13454 F0F1 ATP synthase sub 48.4 1.7E+02 0.0037 24.9 15.3 23 102-124 79-101 (181)
434 PF12329 TMF_DNA_bd: TATA elem 48.4 1.1E+02 0.0023 22.5 9.6 41 174-214 19-59 (74)
435 TIGR00414 serS seryl-tRNA synt 48.2 1.2E+02 0.0025 29.6 8.9 26 111-136 35-60 (418)
436 PRK15379 pathogenicity island 48.1 8.4 0.00018 35.7 0.9 36 49-90 13-48 (317)
437 KOG1937 Uncharacterized conser 48.0 3E+02 0.0065 27.6 17.5 76 120-197 255-330 (521)
438 PRK09173 F0F1 ATP synthase sub 48.0 1.6E+02 0.0034 24.3 14.0 106 78-185 23-131 (159)
439 PF07106 TBPIP: Tat binding pr 47.9 1.6E+02 0.0035 24.5 9.1 52 169-220 81-134 (169)
440 PF09738 DUF2051: Double stran 47.6 2.4E+02 0.0053 26.4 13.6 45 105-149 83-127 (302)
441 PF10241 KxDL: Uncharacterized 47.5 1.2E+02 0.0026 22.9 8.2 62 91-152 21-82 (88)
442 PF03962 Mnd1: Mnd1 family; I 47.5 1.9E+02 0.004 25.0 14.3 54 130-184 72-127 (188)
443 TIGR03825 FliH_bacil flagellar 47.3 2.1E+02 0.0046 25.6 16.4 50 110-159 41-91 (255)
444 PRK14473 F0F1 ATP synthase sub 47.3 1.6E+02 0.0035 24.3 16.8 22 104-125 58-79 (164)
445 PRK09343 prefoldin subunit bet 47.2 1.5E+02 0.0032 23.8 11.8 33 109-141 17-49 (121)
446 PF08898 DUF1843: Domain of un 47.2 49 0.0011 23.2 4.4 45 151-202 8-52 (53)
447 PF05546 She9_MDM33: She9 / Md 47.0 2.1E+02 0.0046 25.5 16.2 94 101-197 34-129 (207)
448 PRK15362 pathogenicity island 46.8 1E+02 0.0022 30.5 8.1 83 76-158 60-151 (473)
449 PRK13428 F0F1 ATP synthase sub 46.6 2.9E+02 0.0064 27.0 19.8 52 78-129 22-76 (445)
450 TIGR00293 prefoldin, archaeal 46.6 71 0.0015 25.2 6.0 37 178-214 3-39 (126)
451 PF01496 V_ATPase_I: V-type AT 46.6 6.5 0.00014 40.8 0.0 105 108-216 12-116 (759)
452 PRK05759 F0F1 ATP synthase sub 46.5 1.6E+02 0.0034 23.9 16.6 8 80-87 27-34 (156)
453 TIGR01010 BexC_CtrB_KpsE polys 46.5 2.5E+02 0.0054 26.2 18.6 125 99-228 170-311 (362)
454 COG0216 PrfA Protein chain rel 46.4 2.8E+02 0.006 26.7 12.2 29 75-104 2-30 (363)
455 PF10234 Cluap1: Clusterin-ass 46.4 2.4E+02 0.0052 26.0 13.7 41 176-216 171-211 (267)
456 cd07623 BAR_SNX1_2 The Bin/Amp 46.2 2.1E+02 0.0045 25.2 17.9 91 121-214 110-201 (224)
457 PHA02047 phage lambda Rz1-like 46.0 1.3E+02 0.0029 23.7 7.1 28 176-203 36-63 (101)
458 PRK07353 F0F1 ATP synthase sub 45.9 1.5E+02 0.0033 23.6 14.6 41 121-161 44-84 (140)
459 PF07798 DUF1640: Protein of u 45.9 1.9E+02 0.004 24.5 17.0 124 82-208 24-151 (177)
460 PF07227 DUF1423: Protein of u 45.8 3.2E+02 0.0068 27.2 13.6 51 114-164 351-401 (446)
461 PF05615 THOC7: Tho complex su 45.6 1.6E+02 0.0035 23.7 12.4 21 164-184 50-70 (139)
462 TIGR02971 heterocyst_DevB ABC 45.6 2.4E+02 0.0051 25.7 13.9 11 209-219 186-196 (327)
463 PRK08032 fliD flagellar cappin 45.5 1.4E+02 0.0031 29.2 9.1 54 128-196 407-460 (462)
464 PF11047 SopD: Salmonella oute 45.3 10 0.00022 35.3 1.0 20 70-89 28-47 (319)
465 PRK05014 hscB co-chaperone Hsc 45.2 1.9E+02 0.0042 24.5 11.3 79 97-181 86-164 (171)
466 PRK09973 putative outer membra 44.8 1.4E+02 0.0031 22.9 7.0 28 182-209 25-52 (85)
467 PF09731 Mitofilin: Mitochondr 44.8 3.3E+02 0.0072 27.2 17.8 139 86-229 228-371 (582)
468 KOG0837 Transcriptional activa 44.8 1.9E+02 0.0041 26.8 9.0 42 165-206 225-266 (279)
469 TIGR01541 tape_meas_lam_C phag 44.4 2.8E+02 0.0061 26.2 18.3 28 154-181 73-100 (332)
470 COG5570 Uncharacterized small 44.4 1.1E+02 0.0024 21.5 6.4 51 132-182 3-55 (57)
471 PRK13428 F0F1 ATP synthase sub 44.3 3.2E+02 0.0069 26.8 17.7 52 102-153 28-79 (445)
472 PF10212 TTKRSYEDQ: Predicted 44.2 3.6E+02 0.0077 27.3 15.7 37 179-215 478-514 (518)
473 TIGR01000 bacteriocin_acc bact 44.1 3.1E+02 0.0067 26.6 20.3 26 199-224 288-313 (457)
474 PF04201 TPD52: Tumour protein 44.1 87 0.0019 26.8 6.4 36 176-211 31-66 (162)
475 PF04394 DUF536: Protein of un 44.0 99 0.0021 20.9 6.4 36 172-207 8-43 (45)
476 PRK06669 fliH flagellar assemb 43.6 2.5E+02 0.0054 25.4 15.3 50 100-149 68-118 (281)
477 PF09849 DUF2076: Uncharacteri 43.6 68 0.0015 29.2 6.1 61 77-145 11-73 (247)
478 PF05010 TACC: Transforming ac 43.5 2.3E+02 0.0051 25.0 19.7 11 131-141 94-104 (207)
479 KOG1916 Nuclear protein, conta 43.4 4.9E+02 0.011 28.7 17.4 51 88-138 858-908 (1283)
480 PF09789 DUF2353: Uncharacteri 43.2 3E+02 0.0064 26.1 12.5 23 99-121 9-31 (319)
481 PF05262 Borrelia_P83: Borreli 43.2 3.6E+02 0.0078 27.1 15.7 13 199-211 318-330 (489)
482 PRK14475 F0F1 ATP synthase sub 43.1 2E+02 0.0043 24.0 16.8 125 100-244 34-159 (167)
483 PRK10722 hypothetical protein; 43.0 1.3E+02 0.0029 27.4 7.7 52 169-220 157-208 (247)
484 PF06698 DUF1192: Protein of u 42.6 1E+02 0.0022 22.0 5.6 34 190-223 23-56 (59)
485 PRK15380 pathogenicity island 42.5 13 0.00028 34.2 1.3 46 35-88 1-46 (319)
486 PF05055 DUF677: Protein of un 42.5 3.1E+02 0.0066 26.1 13.5 96 105-209 235-330 (336)
487 PF15466 DUF4635: Domain of un 42.5 37 0.0008 27.7 3.7 35 82-116 88-122 (135)
488 PRK08475 F0F1 ATP synthase sub 42.5 2.1E+02 0.0045 24.1 11.3 80 99-178 45-125 (167)
489 PRK06975 bifunctional uroporph 42.4 4E+02 0.0088 27.5 13.5 105 139-244 344-448 (656)
490 cd04779 HTH_MerR-like_sg4 Heli 42.4 1.4E+02 0.0031 24.4 7.3 56 166-221 59-114 (134)
491 PF13874 Nup54: Nucleoporin co 42.3 1.9E+02 0.0041 23.6 9.1 96 105-219 43-141 (141)
492 cd07627 BAR_Vps5p The Bin/Amph 42.2 2.3E+02 0.005 24.6 19.0 122 99-220 3-168 (216)
493 PF10805 DUF2730: Protein of u 42.2 1.4E+02 0.003 23.4 7.0 48 167-214 49-98 (106)
494 PRK01203 prefoldin subunit alp 42.1 99 0.0021 25.5 6.3 41 162-202 2-42 (130)
495 PRK09546 zntB zinc transporter 42.0 2.8E+02 0.0061 25.5 12.4 114 83-196 141-258 (324)
496 PRK08453 fliD flagellar cappin 41.8 1.6E+02 0.0035 30.7 9.1 70 77-149 599-668 (673)
497 PF00435 Spectrin: Spectrin re 41.7 1.3E+02 0.0027 21.4 13.1 97 128-224 2-102 (105)
498 PF10211 Ax_dynein_light: Axon 41.6 2.3E+02 0.005 24.4 15.1 106 118-224 72-185 (189)
499 COG1730 GIM5 Predicted prefold 41.5 2.1E+02 0.0045 24.0 8.2 52 178-229 91-142 (145)
500 COG1422 Predicted membrane pro 41.5 1.4E+02 0.0031 26.4 7.5 47 133-183 71-117 (201)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=100.00 E-value=1.2e-38 Score=281.67 Aligned_cols=171 Identities=30% Similarity=0.412 Sum_probs=169.4
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 155 (251)
||||+||+++|+|++|+++|++|||++||+|+|+||++++.++++++|++++.++++++++.++...+++|+.+|++||+
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025526 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVF 235 (251)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~ 235 (251)
+|+|||||+||.+|..++.++..|+.+++.+...+++|+.++.+|+.+|.+++.|+++|++|.++|+++.++++.+++++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHH
Q 025526 236 SASATSLVLLV 246 (251)
Q Consensus 236 ~~~a~~~f~~~ 246 (251)
+++++.+|+..
T Consensus 161 ~~~a~~~f~rm 171 (222)
T PRK10698 161 LDEAMARFESF 171 (222)
T ss_pred cchHHHHHHHH
Confidence 99999999864
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=100.00 E-value=2.4e-37 Score=272.50 Aligned_cols=172 Identities=34% Similarity=0.459 Sum_probs=170.1
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 155 (251)
||||+||+++|+|++|+++|++|||++||+|+|+||+++|.++++++|++++.+++++++++++...+++|+++|+.||+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025526 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVF 235 (251)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~ 235 (251)
+|+||||++||.++..++.++..|+.+++.+...+++|+..+..|+.+|.+++.++++|+||.+.|+++.++++.+++++
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHH
Q 025526 236 SASATSLVLLVM 247 (251)
Q Consensus 236 ~~~a~~~f~~~~ 247 (251)
.+++++.|+.+.
T Consensus 161 ~~~a~~~fer~e 172 (219)
T TIGR02977 161 SDEAMARFEQYE 172 (219)
T ss_pred chhHHHHHHHHH
Confidence 999999998764
No 3
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=263.05 Aligned_cols=171 Identities=44% Similarity=0.516 Sum_probs=169.2
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 155 (251)
||||+||+++++|++|+++|++|||.+||+|+||||+.+|.++++.+|++++.+++++++++++...+++|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025526 156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVF 235 (251)
Q Consensus 156 ~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~ 235 (251)
+|+|+||+++|.+++.+++++..++.++..+...+++|+.++..|+.||.+++++++.+++|.++++++.+|++++++++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHH
Q 025526 236 SASATSLVLLV 246 (251)
Q Consensus 236 ~~~a~~~f~~~ 246 (251)
++++...|+.+
T Consensus 161 ~~sa~~~fer~ 171 (225)
T COG1842 161 SSSAMAAFERM 171 (225)
T ss_pred chhhHHHHHHH
Confidence 99999999865
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=100.00 E-value=1.4e-35 Score=260.21 Aligned_cols=171 Identities=42% Similarity=0.557 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
|||+||+++|+|++|+++|++|||++||+|+||||+++|.+++++++.+++.+++++++++++...+.+|+.+|..||++
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 025526 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFS 236 (251)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~ 236 (251)
|+||||++||.++.+++.++..|+.+++.+..++++|+..+.+++.+|.+++++++.|++|.++++++.++++++++++.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~ 160 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSV 160 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 025526 237 ASATSLVLLVM 247 (251)
Q Consensus 237 ~~a~~~f~~~~ 247 (251)
+++...|+.+-
T Consensus 161 ~~a~~~~er~e 171 (221)
T PF04012_consen 161 SSAMDSFERME 171 (221)
T ss_pred cchHHHHHHHH
Confidence 99999998753
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=97.34 E-value=0.0084 Score=49.76 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (251)
++..+....++++++...++..+.+...+|..++++|+.+.|+-.|.++..++..+..+...+..++ .+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~-----------~~ 70 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLE-----------SV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 3556677788999999999999999999999999999999999999999999888877776655444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 025526 201 ESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 201 e~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~~~ 246 (251)
..+|+.+......+.+=....++-++++..+.--+....+..|...
T Consensus 71 ~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~ 116 (171)
T PF03357_consen 71 LLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEE 116 (171)
T ss_dssp HHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455555666666666666666666666655544455555555443
No 6
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.07 E-value=0.066 Score=46.82 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 123 AQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (251)
Q Consensus 123 A~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (251)
..+......++.+...++..+++....|+..+.+|+-+-|..+|.+|+.|+.++..+..++.+++.++..+...
T Consensus 30 l~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a 103 (191)
T PTZ00446 30 LKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENM 103 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666667788889999999999999999999999999999999988887776543
No 7
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.06 E-value=0.18 Score=44.21 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED-----WYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~-----~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
..-++..|.+++..+..+...--........++..+......+.. -++-|+.|+..- ..+-.....++.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k-----~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK-----ADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 344666666777777776666666666666666666666555544 355666666542 2344556778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
+..+..+++.+...+.+|+..+.+++.+...+..+....+++.....+...++ ..+..+.|++++-
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~----~~~a~~~~er~e~ 172 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS----VSSAMDSFERMEE 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----ccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887655544 5567777877764
No 8
>PRK10698 phage shock protein PspA; Provisional
Probab=96.83 E-value=0.2 Score=44.64 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----DWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~-----~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (251)
++..+.+++..+.++...--........++.........+. -.++=|+.||..- ..+......++.++..
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K-----~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK-----QKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 33444444555555444444444444444444444443333 3455666666542 3456777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~~~ 246 (251)
.+.+++.++..+.+|+..+.+++.|...+..+.....++....++-. .+...+..+.|++||.-
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~----~~~~~~a~~~f~rmE~k 174 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD----SGKLDEAMARFESFERR 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988766554 35556777888888753
No 9
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.78 E-value=0.19 Score=46.91 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
++++.....+++.+..++...+.+......+..-+..+....+.+....... +..-+++...--.+...+...+..+..
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L-k~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENL-KQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444444444444444444444444433333321 111111222222333334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.++..+..+.+++..+..++.+|++...++..+.+..+.++
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544433
No 10
>PRK09039 hypothetical protein; Validated
Probab=96.56 E-value=0.41 Score=45.23 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq 224 (251)
..++..|..+++.++.++..|...|..++.+..+.+.+++.|..+.+.+.++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666666666666666666544
No 11
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.44 E-value=0.57 Score=41.35 Aligned_cols=129 Identities=10% Similarity=0.053 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE-----DWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~-----~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
.|.+++..+.++...--........++.........+. --+.-|+.||. --.........++.++..++.
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~-----~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI-----EKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444433333333334443333333332 23445555554 233344555566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVL 244 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~ 244 (251)
+++.++..+..|+..+..++.+-..+..+.....++.....+-. .....+....|++++
T Consensus 114 ~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~----~~~~~~a~~~fer~e 172 (219)
T TIGR02977 114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLD----SGRSDEAMARFEQYE 172 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 77777777777777777777777777777766666555443332 233334445555553
No 12
>PRK09039 hypothetical protein; Validated
Probab=96.37 E-value=0.56 Score=44.35 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
++-.....+..+++.|+.|+..++..++..+......+.+|++++.+++...++
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777777777777777666666666666666666666655
No 13
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.25 E-value=0.55 Score=43.87 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
...|+..+..|+++...+...+..+-...-.+..+++.+..++..+...... +...|-+--..+-.+...+...++..+
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888888888888888777665 566665555566666777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
..+++.+.+...++..+..++.++.+++.+...+.
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666655554
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.12 E-value=1.1 Score=50.17 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA-REALKRRKSYADNANAL 179 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA-reAL~rk~~~e~~~~~l 179 (251)
..+|+.+ --......+++..+...-....+++..+.++..++.+++.++..|.+.-...-- .....++..+...+..+
T Consensus 282 R~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeEL 360 (1486)
T PRK04863 282 RVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEEL 360 (1486)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777 457788888888888888888888888888998998888888888665332211 12244455555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
...++.....++.++..+..++.++.+++.+.+.++
T Consensus 361 ee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 361 EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555555555444444444444443
No 15
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.11 E-value=0.97 Score=40.48 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
....|+.++...+.++..+...+.+|+..+..++.|...++++.....+......
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555544444444333
No 16
>PRK11637 AmiB activator; Provisional
Probab=96.09 E-value=1.1 Score=43.16 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~ 143 (251)
++..|.+.+..|......+..+-.+...++.++++++.++
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444333
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.54 E-value=1.7 Score=38.82 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK--GEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~--G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
+.....+.+..+.++.+-+..+-..-.+.+.+.+.++..+..++......-.. .-+.--..+-.+...|+.++..|..
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~ 183 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEE 183 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444333322110 0011223456666778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEF 232 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~ 232 (251)
.+..++...+.....+..|+..|..+...+...+.+... .+..+..+++
T Consensus 184 ~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~--~~~eld~~l~ 232 (237)
T PF00261_consen 184 KLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK--VQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 888888888888888888888888887777766655443 3334444443
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.52 E-value=2.1 Score=40.09 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (251)
.|+..+..|+.+.......+..+-.-.-.+..+++.+..++..+.+.... ++.-+.+..+.+= +.+.....+
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e-~~~~d~~eL~~lk-------~~l~~~~~e 219 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE-LEDCDPTELDRAK-------EKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhCCHHHHHHHH-------HHHHHHHHH
Confidence 34444444444444444444444444444555555555555554443333 2232333333332 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
+......+++++..+..++.+|++...++..+...-+.++
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555444444
No 19
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.78 Score=44.66 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (251)
+.+.-.+++.++-....+.++++.+++++++...+++.|+..|.--+|..-|.+++..++.++..-..+.+++..+.++
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~I 306 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQI 306 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888999999999999999999999999999999999999999999999998888877766655544
No 20
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.19 E-value=2.3 Score=38.35 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=98.9
Q ss_pred cccCCCcccccCchHHHHHHH------HHHHHHHhhcccC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 65 YRQGGGALNTRMNLFDRLARV------VKSYANAILSSFE--------DPEKILEQAVLEMNDDLVKMRQATAQVLASQK 130 (251)
Q Consensus 65 ~~~~~~~~~~~M~if~Rl~~l------ira~in~~lDk~E--------DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k 130 (251)
.++|+.....-..+++|..++ +...|+++++++. -|..-|..++.|.+.=|.++|.- .......
T Consensus 72 ~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~ 149 (264)
T PF06008_consen 72 SRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQ 149 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHH
Confidence 345555555555666666664 4455666666652 25677777777887777777665 2444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
..+.++.+++.........-.. .....+.|+..+-....+|...+..++..+.++...+.+...-...-+..+.+++.+
T Consensus 150 ~Ae~El~~A~~LL~~v~~~~~~-~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k 228 (264)
T PF06008_consen 150 NAEDELKEAEDLLSRVQKWFQK-PQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKK 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444432222221111 345667888888888899999999999999998888888777666666666666666
Q ss_pred HHHHHHHHHHHH
Q 025526 211 KDTLKARAQSAK 222 (251)
Q Consensus 211 ~~~LkAr~~~Ak 222 (251)
+..+.-......
T Consensus 229 ~~~l~~~~~~~~ 240 (264)
T PF06008_consen 229 KQELSEQQNEVS 240 (264)
T ss_pred HHHHHHHHHHHH
Confidence 666665544443
No 21
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.04 E-value=3.1 Score=39.02 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
.+..++.++......++..+....+++..|++++.
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 22
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.03 E-value=2.4 Score=43.04 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=99.9
Q ss_pred ccccCchHHHHHHH-----HHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 72 LNTRMNLFDRLARV-----VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 72 ~~~~M~if~Rl~~l-----ira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
..++|+++.+|.++ +-..+-.++++..+ ..-.++++...+.+....++.....+-.+++-.+.+.+.-...
T Consensus 86 E~afl~vye~L~eaPDP~pll~sa~~~l~k~~~----~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~ 161 (629)
T KOG0963|consen 86 EAAFLDVYEKLIEAPDPVPLLASAAELLNKQQK----ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLL 161 (629)
T ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhh----hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHH
Confidence 34566666666642 22233333333333 2234567788888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 147 YRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 147 e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
+..++.++.-=.+.+.+....+...+.+.-..++.++..++..+..|...+.....++-+++++
T Consensus 162 ~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 162 EIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 8888888888888999999999999999999999999999999998877776666666655555
No 23
>PRK11637 AmiB activator; Provisional
Probab=94.95 E-value=3.3 Score=39.92 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~ 144 (251)
.-+++.|.+.+.+|.+....+.....+...++.+++..+....
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444444444444444433
No 24
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.92 E-value=3.9 Score=39.62 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
+..++..++++.++.++.+.++++......+..+++.+..+-.+++.++.
T Consensus 119 ~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 119 EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666666665555555544
No 25
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.79 E-value=3.3 Score=38.78 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.3
Q ss_pred cCccceeEeec
Q 025526 43 NGGVGALKVTR 53 (251)
Q Consensus 43 ~~~~~~~~~~~ 53 (251)
+|-+..+.|..
T Consensus 51 ~G~v~~i~V~e 61 (423)
T TIGR01843 51 GGIVREILVRE 61 (423)
T ss_pred CcEEEEEEeCC
Confidence 34455555543
No 26
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.78 E-value=5.9 Score=42.20 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=59.7
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH------HHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA------REALK 167 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA------reAL~ 167 (251)
+.+.||..++.+ +..|.=++.+...=-.++|..+-.+++++.+.+.+..+... |-....+++| .-+--
T Consensus 245 ~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe----~ke~~k~emad~ad~iEmaTl 318 (1243)
T KOG0971|consen 245 LKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQE----AKERYKEEMADTADAIEMATL 318 (1243)
T ss_pred hhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 335678777665 34555555555555566677777777777766655443221 1111112121 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki 204 (251)
.|.-.|++++.|+..++..++.+++|..++.-|+..+
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777777776666443
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=94.76 E-value=3.9 Score=42.75 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
+..++..+..+......++.++..+.....++
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443334444443333333333
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.64 E-value=1.6 Score=47.30 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANAL 179 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~~~~~l 179 (251)
+-.+-.|+..++.|.+++..++.+..-....-.++.+++..++++..++..- -.+.=+..|-.+..+..+.++.+..+
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666665554320 01111344555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
+..++...+.+++--+.....+.+.+.++.+-.
T Consensus 1667 q~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~ 1699 (1758)
T KOG0994|consen 1667 QKYYELVDRLLEKRMEGSQAARERAEQLRTEAE 1699 (1758)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 555554444443333333333333444443333
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.52 E-value=2.3 Score=41.73 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMND-DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 99 DP~~mLdQ~Ireme~-~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
+-.+..+|.+-+|++ +|...++-+-..+.+.+.++......++...-.+++... ++.--+++..+.-..+..-...+.
T Consensus 332 Sqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q-~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 332 SQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ-LQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666666 555555554444444444444444444333333333322 111111222222222211122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
.+..-...+++..+..+..+...+.+|.+++.++..|+.-..
T Consensus 411 nq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 411 NQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 233333444555555556666666666666666666665443
No 30
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.50 E-value=2.6 Score=46.40 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ--SAKFVFPLSL 229 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~--~AkAq~~vn~ 229 (251)
.+.++..++.++..+...++.+...+..++..+..+..++..+..+++.++.+.+ ..+++.+++.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVND 945 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999888888775533 3334444433
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.48 E-value=2.9 Score=43.48 Aligned_cols=146 Identities=12% Similarity=0.200 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHH-----hhcccCCH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANA-----ILSSFEDP-----EKILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASED 145 (251)
Q Consensus 77 ~if~Rl~~lira~in~-----~lDk~EDP-----~~mLdQ~Ireme~~L-~kar~~lA~v~A~~k~le~k~~~~~~~~~~ 145 (251)
++-..+..++....+. ..|+..+| -.+|-|++.-+.+++ .+....-..+....+.++.+++....++.+
T Consensus 504 sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 504 SFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred hHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655331 23555543 267777777776663 444444444444445555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 146 WYRKAQLALQKGEEDLAR---EALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 146 ~e~rA~~AL~~G~EdLAr---eAL~rk~~~e~~~~~l~~ql~~----~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
.++. ...++...+.||. ++..+...+.++++.+-..+.. ......++++.++.++.+++.++...+.++.+.
T Consensus 584 l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 2224444444442 3344444444445444444433 344556677778888888888888888887777
Q ss_pred HHHHH
Q 025526 219 QSAKF 223 (251)
Q Consensus 219 ~~AkA 223 (251)
+.++.
T Consensus 663 ~~Q~~ 667 (717)
T PF10168_consen 663 DYQQR 667 (717)
T ss_pred HHHHH
Confidence 66554
No 32
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.46 E-value=3.8 Score=43.30 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 025526 197 TRLLESKIQEARSK 210 (251)
Q Consensus 197 l~~Le~ki~e~k~k 210 (251)
+..+..++..++.+
T Consensus 463 ~~~l~~~~~~~~~~ 476 (1179)
T TIGR02168 463 LEELREELEEAEQA 476 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.46 E-value=3 Score=41.61 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~l-A~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
..++++...+.++...+++... ..+...+..+++++++.+.++.+++++
T Consensus 35 e~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~r 84 (514)
T TIGR03319 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555555443 333334444444444444444444443
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.40 E-value=2.5 Score=35.10 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 86 ira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
++.-...+.+++ .-++.-+.++++...+....+..+...-..++.+++.+...+......+...
T Consensus 5 lk~E~d~a~~r~----e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 5 LKLEADNAQDRA----EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444 4466666677777777777777776666777777777766666665555443
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.18 E-value=4.2 Score=36.82 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=65.2
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC-CHHHHHH
Q 025526 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---AQLALQKG-EEDLARE 164 (251)
Q Consensus 89 ~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r---A~~AL~~G-~EdLAre 164 (251)
.+..-+++++--..=..-++..++..+..++..+....-....++.++...+..+.+...+ ++..+... ++.-.+.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4444444444222223333334444444444444444444444444444444444333332 23334333 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.-.+.....++...+..++..+...+.++...+..++.++..++.....+..+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777766666666666666666666666665555544
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.14 E-value=3.3 Score=41.68 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (251)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~ 191 (251)
++..++..+...-.....++.++..+..+++++..+-..+ ...|...-.+..+.+...++.....++..+..++..+.
T Consensus 93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555554 33444445555555555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.|+.....|...|..++..++
T Consensus 173 ~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 173 RLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 666666666655555554443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.07 E-value=2.7 Score=37.08 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPV 234 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~ 234 (251)
....++..+++....+.+|++...+|+.++.+++.+.+.+.+.....+-...+.=.+.|.
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg 178 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGG 178 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Confidence 344445555555566666777777777777777777777777777777666666666553
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.94 E-value=4.4 Score=36.12 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
+.|+.-....++.+......+..+.......+++|++......-.+.....|- +-+..+=.+...++..+..+..
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-----eR~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-----ERAEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhchhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433333331 1222333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.+..++....+.......++.+|..+..++...-.|...|.
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555555555544443
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.91 E-value=3.4 Score=46.33 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
.-|++.|..+++...+++..+-++.......+..+..+....+.+.
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~ 1033 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKR 1033 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444444444444444333
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.85 E-value=4.7 Score=43.81 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
+++.+++++..+.+++-.+-...++.+++...+..++.++...+..
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555556666655566666666555554
No 41
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=3.1 Score=33.87 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A---L~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
.+.+.-.++.+....+..++..+..++.++.+.....++++.=...| ..-|+ +|.+. +.+.-...|+...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~------llvk~-~k~~~~~eL~er~ 79 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN------LLVKV-SKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh------HHhhh-hHHHHHHHHHHHH
Confidence 44556667788889999999999999999999887777666543332 22332 23322 4555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
+..+-.+..|+.+-+.++.++.+++.++.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666556555555555544
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.74 E-value=2.6 Score=41.41 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
.+|++.+.-.+....++..-.+.+.++-+++++.+.+..+++|+++-.. ++.-+.-|-+.-...+..+++.-+.++..+
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~-~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE-EREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777788888999999999999999999999999988654 343344455555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ 202 (251)
......+..|+++++.|--
T Consensus 431 ~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHhHhe
Confidence 6666667777766666543
No 43
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.73 E-value=4.4 Score=35.48 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 80 ~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
.+-+.=++.+-|++...-=+=++-|...|.+|+......+..++.+..+-+++..-+..++.++.++......- .+...
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~ 86 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34445566677777666556678899999999999999999999999999999999999999999998887752 33222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 160 dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
.|+ .+-.+....+.++..++-+.+.+.....++.....+|..
T Consensus 87 ~L~-~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 87 SLQ-NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233344455666666666666666666666555554443
No 44
>PTZ00464 SNF-7-like protein; Provisional
Probab=93.71 E-value=4.7 Score=35.74 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
.-.-|..+|.+|+.||.++..+..++.++++.+..+.
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999998888877776665554
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=93.62 E-value=11 Score=39.52 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
..+..+...++..+..+...+...+...+.+...+..++.++.++
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~ 693 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL 693 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665555555655555555555555544443
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.60 E-value=7.8 Score=37.87 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=66.7
Q ss_pred hhcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025526 93 ILSSFEDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK 170 (251)
Q Consensus 93 ~lDk~EDP~--~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~ 170 (251)
++..-|||. .-+-.+++.|...+.+.-.++......-...+..+..-+.+... ++.........|++...++
T Consensus 135 ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E~-- 208 (420)
T COG4942 135 LLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEER-- 208 (420)
T ss_pred hhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--
Confidence 355556764 55666677776666666666666655555555555544444332 2223333444555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
......+..++...++..++|..+-..|+..|..+.....
T Consensus 209 --kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 209 --KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777777777775554
No 47
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=93.56 E-value=6.4 Score=36.82 Aligned_cols=105 Identities=9% Similarity=0.128 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (251)
++...+.+++.++......-..++.+++.++..+..+...... -..+...-....+....++.+....+..+|...+..
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~ 149 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-KGITENGYIINHLMSQADATRKLAEATRELAVAQER 149 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666655666666666666666665533211 111122222344455667777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
++++..........+.....++-.+.
T Consensus 150 l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 150 LEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777777554
No 48
>PF13166 AAA_13: AAA domain
Probab=93.53 E-value=5.7 Score=40.42 Aligned_cols=65 Identities=8% Similarity=0.099 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCC
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKFVFPLSLLEFPVF 235 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~-~AkAq~~vn~~l~~~~ 235 (251)
.+...+..+...+...+..+..+...+..++..+...+.+...|.+... ...+...+|..+..++
T Consensus 407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4445555666666667777777777777777777777777777777755 6777788888777663
No 49
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=93.53 E-value=1 Score=44.55 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
.+.+++++|.+++..++++.+...-++.+++-+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555554433
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.41 E-value=14 Score=40.08 Aligned_cols=122 Identities=14% Similarity=0.201 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
-+-.|.++.+.+...+...-++.......++.+.+.....+.++++...+-.. +-...-.++.+.++.+..|+.++
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~----~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQ----TNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555443222 22333344455566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR-AQSAKFVFPLSL 229 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr-~~~AkAq~~vn~ 229 (251)
+.++.++..|+..+..+..++.+.+-++..+.-. ....+..+..+.
T Consensus 411 ek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~ 457 (1074)
T KOG0250|consen 411 EKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISE 457 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666666666555555322 333334444443
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.40 E-value=7.4 Score=41.50 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 68 ~~~~~~~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
||++-+.--+=|++|-. -...+.+.+=++-|-..--.|-+..+.+++..-+..+-.+...+.++.++++.++..+.++.
T Consensus 359 G~~~~~~ss~qfkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 359 GSDGQAASSYQFKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred CCCCcccchHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553433356766643 23444555556666555556667778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
.+.-.|| |-|+.-.....++..+|+.+..|+..+.+
T Consensus 438 EQVDAAl--GAE~MV~qLtdknlnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 438 EQVDAAL--GAEEMVEQLTDKNLNLEEKVKLLEETVGD 473 (1243)
T ss_pred HHHHHhh--cHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 9999987 55666666666666666666666655543
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.24 E-value=8 Score=41.73 Aligned_cols=45 Identities=9% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
+.+++......+++........+-+.++..++.+++.+.+++.+-
T Consensus 344 ~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 344 KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444444443333
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.03 E-value=5.4 Score=39.24 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
.+...++..+..++.........+.++...+..+...+.+...+
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.03 E-value=7 Score=35.67 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 025526 85 VVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (251)
Q Consensus 85 lira~in~~lDk~EDP----~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed 160 (251)
.+.+.++.+-++...+ ..+++..|++++..|..+...-+.+......+...++++..+.+..
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-------------- 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-------------- 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH--------------
Confidence 4555666665553222 3556666666666666666655555555555555555554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
......++..+..++..++........|...+..|+..|.-
T Consensus 95 -----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 95 -----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 44444555555555555555555545554444444444433
No 55
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.94 E-value=5.5 Score=41.12 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~-------k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (251)
..|.+++.++.+++..++.....- ..++.++++++.++.+--++....+ -.+......+...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~-----------~~~~~~a~~~~~~ 356 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSL-----------LMQADAAQARESQ 356 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 678888888888888877766643 3344444444444433222222211 1112222333334
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNL---VSNTRLLESKIQEARSKKDTLKARAQSAKFVFPL 227 (251)
Q Consensus 179 l~~ql~~~~~~v~~L---k~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~v 227 (251)
++.++++++..+.++ ...+..|+...+-.+.-.+.+..|.+.++.+...
T Consensus 357 L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~ 408 (754)
T TIGR01005 357 LVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNY 408 (754)
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444444444443333 4556666666677777777777777776666543
No 56
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.87 E-value=8.5 Score=42.00 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (251)
.....+..++.+++.....+..++..+..++.++..++.+...+..+....
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444443333
No 57
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=92.83 E-value=3.6 Score=31.92 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.|..+..++.+.+....... .+|+.+=+..-..+.+++..++.+-..-..++.++.++
T Consensus 4 ~f~~~~~~v~~el~~t~~d~----~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l------------------ 61 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDY----NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL------------------ 61 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 56777777777766554433 34555544555555555555555544444444444333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
..+-+++..++.++..++..+..|..-..+||.|+..
T Consensus 62 ------------~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 ------------QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667888888888889999999999999988864
No 58
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.56 E-value=6 Score=33.69 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
|++.+-+.+..+-..+++=.|. ..+.+..+..+|.+++..++.++.....++.+....+....+... -...-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~----~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~----~f~~y 74 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQ----ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR----NFDRY 74 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccc
Confidence 3344444444444444333333 566677888899999999999999999998888777766655433 24455
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~k 203 (251)
.|+--++|-.+..+++-++..++..-.++...-+.|+..+..++.-
T Consensus 75 sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~t 120 (159)
T PF05384_consen 75 SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEET 120 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677766655555555555554444444444444444444433
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=92.29 E-value=16 Score=38.06 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q 025526 78 LFDRLARVVKSYANAIL 94 (251)
Q Consensus 78 if~Rl~~lira~in~~l 94 (251)
+|....-+-.|.+..++
T Consensus 125 ~f~~~~~~~Qg~~~~~~ 141 (880)
T PRK03918 125 VFLNAIYIRQGEIDAIL 141 (880)
T ss_pred HhceeEEEeccchHHHh
Confidence 44333334456666655
No 60
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=5 Score=34.85 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025526 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 167 (251)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 167 (251)
+...+=...--.++|+++-..++++-..-..++..|+++|+.|.||--.+
T Consensus 7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAe 56 (203)
T KOG3232|consen 7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAE 56 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445556666788888888888888888889999999999999987643
No 61
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.74 E-value=11 Score=36.16 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 195 SNTRLLESKIQEARSKKDTLKARAQSAKFVFPL 227 (251)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~v 227 (251)
..+..|+..++-.+.-.+.|..|...++.....
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~ 374 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQS 374 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666666677777777777666655433
No 62
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=91.71 E-value=8.8 Score=33.79 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
+..++..+.+=.+.++..++.-...|+..+..|+.|-|+.+|.+|..++.-+.+...++-+.++.+..++
T Consensus 21 lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiE 90 (209)
T KOG2910|consen 21 LKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIE 90 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555667889999999999999999999999999999999888887776664
No 63
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.68 E-value=8 Score=37.69 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=57.8
Q ss_pred CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 025526 98 EDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE---EDLAREALKRRKS 171 (251)
Q Consensus 98 EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~---EdLAreAL~rk~~ 171 (251)
.||+ .+++..+...-+.....+..-+. .....++.++++++.+.++-+.+...-..++. .+--.....+...
T Consensus 131 ~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~--~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~ 208 (498)
T TIGR03007 131 KDPELAKDVVQTLLTIFVEETLGSKRQDSD--SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISE 208 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHH
Confidence 3775 45554444333333322222111 23444555555555555555544443322221 1111234466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTR---------------LLESKIQEARSKKDTLKA 216 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~---------------~Le~ki~e~k~k~~~LkA 216 (251)
++.+....+.++...+...+.++..+. .++.++.+++.++..+..
T Consensus 209 l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 209 AQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence 777777777777777766666665433 445555555555555543
No 64
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.67 E-value=8.6 Score=33.62 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 025526 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 160 (251)
Q Consensus 81 Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed 160 (251)
|+-.-+...-...|+++||++.-|.|.|.-+.+++.-.+..+=........+++++.+.+.++......... |.+=
T Consensus 36 k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~-L~~L--- 111 (194)
T PF15619_consen 36 KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH-LKKL--- 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---
Confidence 344444555667799999999999999999999999999999999999999999999999988877666553 2220
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 198 (251)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~ 198 (251)
....-|.+...+..++..++..++.....+..|..++.
T Consensus 112 ~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 112 SEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112333344455555555555555555555554443
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.64 E-value=14 Score=38.35 Aligned_cols=54 Identities=7% Similarity=0.257 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~-------k~le~k~~~~~~~~~~~e~rA 150 (251)
....+..+...|.+++.+..+++.-+..+...+ ..+|+++.+.+......|.+.
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666555555444 345555555555554444443
No 66
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.47 E-value=1.1 Score=41.45 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~ 137 (251)
+=.||-++..|.+....+..--.+-..|+.++.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555555555555555544444444443333
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.46 E-value=6.6 Score=31.87 Aligned_cols=89 Identities=11% Similarity=0.220 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
|...||..+-++...+..++++.+.+..+..++-.+-...+.+. ....+...++.++..++..|
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----------------~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----------------ALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888888887777777666666552 23333344455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+..-.-.-+=...+.+|+..|.++|
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5544444333444444444444443
No 68
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.33 E-value=15 Score=35.71 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 124 QVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
..-+....+..++..++.++..++....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544444
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.27 E-value=17 Score=39.90 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 84 RVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 84 ~lira~in~~lDk~EDP---~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
+.++..++.+.+.++.. .-...-.|+.....+..+++.++++..+-.-.|.......+++.+++.+.
T Consensus 1559 ~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1559 EDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRM 1628 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443322 12333344444444444444444444444444444444444444444443
No 70
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.16 E-value=28 Score=38.80 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+++++..+....+.....+..-+..+.+++.++.+...+.......
T Consensus 338 l~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 338 ARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444455555555544444444433
No 71
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.01 E-value=15 Score=35.19 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 025526 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA----- 153 (251)
Q Consensus 79 f~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A----- 153 (251)
-.-+..++.-..+++-+...--+..|.+-|.|+++...+..-.+..++.+-..+++.+..++..+.+-+.-...|
T Consensus 224 R~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 224 REDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 333444444444444444444467888888888888888888888888888888999988888888887765544
Q ss_pred HhcCCH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 154 LQKGEE------DLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 154 L~~G~E------dLAreAL-~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
....+. |-|-..| .+...+.+.+..|+..+...+.....|......|+..|.-
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233331 4444444 6788888888888888888888888888888888876654
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.99 E-value=7.3 Score=40.54 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHH-HHH---hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSY-ANA---ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 77 ~if~Rl~~lira~-in~---~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+|.+-..+++-. +.. +-+.++--...|...+.+--+.|.+++.....+....+.+..+++++.+.-+++.+|+..
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777654 222 222233334556666666666666677777777777777777888888777777777765
Q ss_pred HHh
Q 025526 153 ALQ 155 (251)
Q Consensus 153 AL~ 155 (251)
-++
T Consensus 619 vl~ 621 (717)
T PF10168_consen 619 VLQ 621 (717)
T ss_pred HHH
Confidence 433
No 73
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.59 E-value=4.2 Score=40.25 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
.||.+-.++.+.|..+..++.+-+.+..+-++++++......+...||+..+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~ 112 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ 112 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH
Confidence 45566777778888888888888889889999999999999999999887553
No 74
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.56 E-value=14 Score=34.03 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCC
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED----WYRKAQLALQKGE 158 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~----~e~rA~~AL~~G~ 158 (251)
-..-|+-.|.+....+.+.+..+.+..++-+.++.+++++...|.+ +..||+.+-..|-
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455677777888888888888888888899999999888887765 4568887777776
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.56 E-value=19 Score=36.35 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=14.4
Q ss_pred ccccccccccccCcc--ceeEeeccccccC
Q 025526 32 MVKKPLTTSFFNGGV--GALKVTRLRIAPS 59 (251)
Q Consensus 32 ~~~~~l~~~f~~~~~--~~~~~~~~~~~~~ 59 (251)
++..|+...+.+|+. +.|.+.+.-+...
T Consensus 56 f~Wa~~p~~~~~~s~~~~~V~F~ayyLPk~ 85 (546)
T PF07888_consen 56 FVWAPVPENYVEGSAVNCQVQFQAYYLPKD 85 (546)
T ss_pred EEeeccCccccCCCccceEEEECcccCCCC
Confidence 344455555555553 3455555555543
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.52 E-value=29 Score=38.15 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
..-++..+-.....+.+++..+.......++.+.++..+......|+.+...+++.-.+
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666667788888888888888888888888888888888888888887766544
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.43 E-value=25 Score=36.65 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 96 k~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
++|.-.+-|.-.|..+++.=.++|..+......+..+..++.+++.+.+.++.+..-..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555666666666666777777777777666666555443
No 78
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=90.09 E-value=17 Score=34.17 Aligned_cols=68 Identities=7% Similarity=0.103 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~ 143 (251)
-|+|+||+.=++..+..++.++++-...+|..+.+++..-.......+..-........-+.++...+
T Consensus 72 ~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I 139 (333)
T PF05816_consen 72 KGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYI 139 (333)
T ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888877767788888899999888888888888887777777776665555554444444444433
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.05 E-value=23 Score=35.68 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~ 141 (251)
...-+...|..+-+.+.+-..+-..+.-+...+...+..+..
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444443333333333333333333333333
No 80
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=90.03 E-value=12 Score=32.45 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHHHhhcccC--CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAILSSFE--DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~E--DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
.|+|+.+...+... .-++. ||. .-..+++..++..|..+...+-.+....+.+-.-+.++-.....|
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~l 71 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQL 71 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788887777665 44444 453 677889999999999999988888888888887777776666554
No 81
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.97 E-value=12 Score=32.54 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=16.4
Q ss_pred CCCcccccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Q 025526 68 GGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQA 107 (251)
Q Consensus 68 ~~~~~~~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~ 107 (251)
-|-|+|. |-.|.=+.+-|+.- .+.||...++-.
T Consensus 42 Eg~A~Gl-m~~f~~l~e~v~~l------~idd~~~~f~~~ 74 (190)
T PF05266_consen 42 EGMAVGL-MVTFANLAEKVKKL------QIDDSRSSFESL 74 (190)
T ss_pred hHHHHHH-HHHHHHHHHHHHHc------ccCCcHHHHHHH
Confidence 4555565 33444344333332 566776665533
No 82
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.90 E-value=15 Score=33.23 Aligned_cols=52 Identities=27% Similarity=0.377 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.-|..-+..++++..+++..+-........|+.+...++.....++.++..|
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~ea 59 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEA 59 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999999999999999888887665
No 83
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.74 E-value=44 Score=38.76 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHhhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 88 SYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 88 a~in~~lDk~EDP---~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
..++++-++.++- ...++...+++++.+...+..+.+.-.....++.+....+.++.+++..
T Consensus 908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e 972 (1930)
T KOG0161|consen 908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEE 972 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 2444555555554444444444444444444444444444444444433
No 84
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.66 E-value=11 Score=31.40 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=33.2
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 99 DP-~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.| ..++++=-..+.+++.++.....++.......+.++.+.+.++.+.-..|...
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 25666666666666666666666666666666666666666555555555544
No 85
>PRK11281 hypothetical protein; Provisional
Probab=89.50 E-value=12 Score=40.96 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=25.5
Q ss_pred HHHHHHHhhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 86 VKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLE 133 (251)
Q Consensus 86 ira~in~~lDk~EDP---~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le 133 (251)
+++.++.+ .+-++| .+.+-|.+++.-+-+.++.....+.-+.+++++
T Consensus 41 iq~~l~~~-~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~ 90 (1113)
T PRK11281 41 VQAQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLA 90 (1113)
T ss_pred HHHHHHHh-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445553 223444 355666777776666666666555544444433
No 86
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=89.48 E-value=11 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
.+|++-=..+.+.+..+...-.++.......+..+.+.+.++...
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~ 78 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKI 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444555444444444
No 87
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.41 E-value=17 Score=33.81 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQ 124 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~ 124 (251)
.+.+.+.++..++..+..
T Consensus 87 ~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 87 TVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555554444443
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.36 E-value=22 Score=34.62 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLV----------SNTRLLESKIQEARSKKDTLKARAQSAKFVFPLS 228 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk----------~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn 228 (251)
...+.+.++..++.+++....++++++ ..+..|+..++-.+...+.+..|.+.++..+.+.
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~ 388 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQME 388 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 334444444444444444444444333 3444666666666667777777777777666554
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.35 E-value=15 Score=34.42 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
+..++.+.+.......+.-.....++..+.++..+++.+.++...+.
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555555544443
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.30 E-value=11 Score=31.18 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=29.3
Q ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 92 ~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
+-.+.++--.+-+++...+.+++|..+..-+..+-.....++.++.++......-+...
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~ 72 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK 72 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444455555555555555555555555555555555555555554444443
No 91
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=89.15 E-value=13 Score=31.77 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.+|++=-..+.+++.++.....++-......+.++.+.+.+..+.-..|+...++-
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~ 113 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAE 113 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666555666666666666666666666666666666666666665555443333
No 92
>PRK09343 prefoldin subunit beta; Provisional
Probab=89.12 E-value=10 Score=30.47 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
|-..+.+.-..+.+.++.+..+......++.++.+.+.-.++++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666777788888888888888888888887777666654
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.03 E-value=19 Score=34.35 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 160 dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.|-|++.+.......-.+.|+....++...+++=...+.+||+|++++.-+...|.
T Consensus 166 ~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 166 TLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888888888888888899999999998777766654
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.93 E-value=25 Score=38.54 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 025526 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ-------LDQQKNVVN 191 (251)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q-------l~~~~~~v~ 191 (251)
.+.++.+......+++.++..+.+++.+.... +|.++-+-+.-.+....++-+..++.+ ++..+..+.
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~-----~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~ 1008 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEEL-----KGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSEN 1008 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433332 333333333333333333333333333 333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.|+...-.++.|+++...+...+...
T Consensus 1009 ~lk~~rId~~~K~e~~~~~l~e~~~~ 1034 (1293)
T KOG0996|consen 1009 ELKAERIDIENKLEAINGELNEIESK 1034 (1293)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhh
Confidence 44442223444555555555555444
No 95
>PRK03918 chromosome segregation protein; Provisional
Probab=88.89 E-value=32 Score=35.84 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.+...++..+..+...++..+..+..++..+..++.++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555554444333
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.89 E-value=13 Score=31.43 Aligned_cols=24 Identities=4% Similarity=0.271 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQK 130 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k 130 (251)
.+.++.+++.+....+......-.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 97
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=88.85 E-value=5.6 Score=36.16 Aligned_cols=87 Identities=10% Similarity=0.237 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLAS-----QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~-----~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
...|+.+|+|++..|.+++.-++..... ......++..+...|.+.-.+|+.+=..|+-|-|..++.+...+...
T Consensus 85 ~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~e 164 (254)
T PF03194_consen 85 LRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEE 164 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4889999999999999998887763332 11126789999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQK 187 (251)
Q Consensus 176 ~~~l~~ql~~~~ 187 (251)
...++.+.+...
T Consensus 165 k~~le~~~~~~~ 176 (254)
T PF03194_consen 165 KEELEKELEEYR 176 (254)
T ss_pred HHHHHhhhhhhh
Confidence 888888544433
No 98
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.72 E-value=17 Score=32.47 Aligned_cols=74 Identities=7% Similarity=0.053 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA-------RAQSAKFVFPLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA-------r~~~AkAq~~vn~~l~~~~~~~a~~~f~~~ 246 (251)
..+...+++++.++.+++.+......+.--+.++-..++.... .++..+ -..+...+...+.+. .+.|..|
T Consensus 77 ~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R-l~~L~~~l~~~dv~~-~ek~r~v 154 (251)
T PF11932_consen 77 RQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER-LARLRAMLDDADVSL-AEKFRRV 154 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHHhhhccCCCH-HHHHHHH
Confidence 3333444444444444444444444444444444444444332 112222 244555665544433 4667776
Q ss_pred HHH
Q 025526 247 MVA 249 (251)
Q Consensus 247 ~~~ 249 (251)
|-+
T Consensus 155 lea 157 (251)
T PF11932_consen 155 LEA 157 (251)
T ss_pred HHH
Confidence 654
No 99
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.68 E-value=22 Score=37.51 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=26.9
Q ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 92 ~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
.+||.-+.-..-|+-.|+++++++..++.......+...++..++......
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~ 281 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSH 281 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhh
Confidence 333434444455566666666666666665555555555554444444333
No 100
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.65 E-value=15 Score=31.68 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (251)
-+++.+-..++++.++.+.-+.....-..+..++..++..+.......... .. -....-.+...++..+......
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~----~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EA----ELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp -------------------------------------------HHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444444444444444444443333333221 11 1112233445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
++.+......|.-.+..++.++..++.+-..|.-|
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777777777777777777766
No 101
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.60 E-value=17 Score=38.24 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
-++..|.+++++..+.++....+......+++..++++.+.++++++-...+.+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 573 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444444455555555555555554444444444333
No 102
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=17 Score=33.47 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 209 SKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 209 ~k~~~LkAr~~~AkAq~~vn~ 229 (251)
.+.+.|+-|.++.......+.
T Consensus 98 ~r~~~l~~raRAmq~nG~~t~ 118 (265)
T COG3883 98 ERQELLKKRARAMQVNGTATS 118 (265)
T ss_pred HHHHHHHHHHHHHHHcCChhH
Confidence 355667777777664443333
No 103
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=88.51 E-value=12 Score=30.50 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (251)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (251)
.+....++...++.+.......+.++..+.....++..+...-...|-. +.....+..-+..|...+..+...+
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~v 87 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLLV 87 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888899999999999999999988776666643 2333455556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 191 NNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
..++..+..-...+.+...++.
T Consensus 88 ~~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 88 MQAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555554443
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.39 E-value=27 Score=34.25 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
|--.-|+..|-+.+.++..++..+.+.-...+.+++++++....++.++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33455666666666666666666666666666666666666665555543
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.28 E-value=46 Score=36.90 Aligned_cols=39 Identities=0% Similarity=-0.088 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
+..++..++.....+..++..+..++.....++..++.+
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 106
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=88.25 E-value=27 Score=34.12 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Q 025526 81 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-- 158 (251)
Q Consensus 81 Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~-- 158 (251)
-+..+++--.|++--....-+..+.--|+++++...+..-.++..+-+-...+..+..++..+.+-+.-.+.|.-.=+
T Consensus 253 ~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~R 332 (421)
T KOG2685|consen 253 ALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENR 332 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHc
Confidence 344555555666666666678889999999999999999999999999999999999999999988887777754322
Q ss_pred ---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 159 ---------EDLAREA-LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 159 ---------EdLAreA-L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
-|.|... ..+...+...+..|+..+++++.....|......|+.+|.-
T Consensus 333 t~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~ 390 (421)
T KOG2685|consen 333 TYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAI 390 (421)
T ss_pred ccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1555433 34566677777777777777777777777777777766653
No 107
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.23 E-value=28 Score=34.27 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
+.+.++++++.+..........+...++.++..+
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.19 E-value=20 Score=32.54 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.++..+..+...+...+..+..++..+..++..+.+.+
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444333333
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.15 E-value=36 Score=35.53 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=84.0
Q ss_pred chHHHHHHHHH------HHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVK------SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 77 ~if~Rl~~lir------a~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
+|.++|..-++ ...+..+.+++.-..-|.+.+++-++--...+..+-+..+..++.+..|...+..+++++.++
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566554333 334555666666666777777777776677777788888999999999999999999999887
Q ss_pred HHHHhcCCH----HH-----HH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 151 QLALQKGEE----DL-----AR--EALKRRKSYADNANALKAQLDQQ----KNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 151 ~~AL~~G~E----dL-----Ar--eAL~rk~~~e~~~~~l~~ql~~~----~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.. +++-.+ || ++ +|=.+...|..++..|...+... ....+.++..+.+|..+++....+-+.|.
T Consensus 554 ~a-~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 554 LA-EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HH-HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 333322 22 11 23333444445555555444332 23344555666666666666655555443
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.03 E-value=2.2 Score=42.18 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
+.+..+.+|+++++..+.+.+.+......+++||++++.+...|+.+...+.
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455667777777777777777777788888888888888888888874433
No 111
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.90 E-value=29 Score=34.16 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----E---DLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~----E---dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (251)
...+.+.+--+|..+|..++++..+-+-+|..+|.... | -++|++--++..++-.+..++.........+..|
T Consensus 244 ~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 244 RSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777777777765321 2 2345555555556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 194 VSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 194 k~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+....++....+.+-..++.+.-|
T Consensus 324 ksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 324 KSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH
Confidence 666666665555555555555544
No 112
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.85 E-value=9.8 Score=39.64 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLL 230 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~ 230 (251)
+.....+..+.|..+++.+.++++.+...-.++..-++.++.+.+.|. + ..++-+++++..
T Consensus 210 ermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~-~-~~~~~~~~mrd~ 270 (916)
T KOG0249|consen 210 ERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR-R-SSLEKEQELRDH 270 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HHHhhhhhhcch
Confidence 333334444444444444444444444444445555555555555555 2 444444444443
No 113
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=87.76 E-value=22 Score=32.53 Aligned_cols=17 Identities=18% Similarity=-0.074 Sum_probs=8.8
Q ss_pred cccccCccceeEeeccc
Q 025526 39 TSFFNGGVGALKVTRLR 55 (251)
Q Consensus 39 ~~f~~~~~~~~~~~~~~ 55 (251)
.++|+|-+..+-|..-.
T Consensus 20 ~~~~~G~V~~i~V~eG~ 36 (327)
T TIGR02971 20 SSGGTDRIKKLLVAEGD 36 (327)
T ss_pred CCCCCcEEEEEEccCCC
Confidence 34555556665554433
No 114
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.71 E-value=32 Score=34.38 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHH---HHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE------EDLAR---EALKRRK 170 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~------EdLAr---eAL~rk~ 170 (251)
-...|...+.-++.+|.+.+..+..+..........+..+..+..........+..... +++.. .+-.+..
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae 382 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAE 382 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555544444444444444444444444333322221 11111 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFP 226 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~ 226 (251)
.....+...+..+..+...++..+..+..++.+|..+....+..++-...|-++-+
T Consensus 383 ~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 383 EAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444455555566666666666666666666666666665555555444433
No 115
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.56 E-value=29 Score=33.82 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~ 144 (251)
....+..++.+-+-.+++.++-.+-.+++..+.++.++..+..
T Consensus 91 ~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~ 133 (499)
T COG4372 91 GTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665555566666666666666666665555443
No 116
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=87.34 E-value=11 Score=31.81 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCCchh
Q 025526 173 ADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKD----TLKARAQSAKFVFPLSLLEFPVFSAS 238 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~---~l~~Le~ki~e~k~k~~----~LkAr~~~AkAq~~vn~~l~~~~~~~ 238 (251)
..+...++.|+.....++..|+. ....|+.+|.+++.+.. .+.+.....+-...|..++.+.+..+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn 98 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKN 98 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56777788888888888888877 77788888888887777 44444444444555556666555444
No 117
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=87.33 E-value=23 Score=32.32 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQAT 122 (251)
Q Consensus 110 eme~~L~kar~~l 122 (251)
..+.++..++..+
T Consensus 84 ~a~a~l~~~~~~~ 96 (334)
T TIGR00998 84 KAEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 118
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.29 E-value=33 Score=35.08 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~ 140 (251)
.+.+.++++.|.+++..+..+..+.+.+...+.+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444444443333
No 119
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=87.22 E-value=18 Score=34.56 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
+.+..+.+++..++.+.+..+.++.++..++..++..+.
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555544444
No 120
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=86.98 E-value=23 Score=33.81 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 025526 160 DLAREALKRRKSYA 173 (251)
Q Consensus 160 dLAreAL~rk~~~e 173 (251)
++|+.-+.|...+.
T Consensus 137 ~~a~~~~~R~~~L~ 150 (390)
T PRK15136 137 AQAQSDLNRRVPLG 150 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 121
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.90 E-value=24 Score=38.05 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRRKSYADNANALKAQLDQQ 186 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr--eAL~rk~~~e~~~~~l~~ql~~~ 186 (251)
.|.+.......+.+..-..-..++++.++.+...++.+.++-.. ++.-++-. .=......+......++...+.+
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~---~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK---KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555444321 11111111 11223344556666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
...+..+......++.++.+++.++..+..+.
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~ 292 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKI 292 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
Confidence 77777777777777777777777666555543
No 122
>PRK12704 phosphodiesterase; Provisional
Probab=86.67 E-value=37 Score=34.04 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~l-A~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
...+++++..+.++...+++... ..+...+..+++++++.+.++.+.+++
T Consensus 40 Ae~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~r 90 (520)
T PRK12704 40 AKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR 90 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666555555443 334444444455544445555444443
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.62 E-value=40 Score=36.00 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 86 VKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 86 ira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
++..=++++.+..|-. .+-++.|-|+++...+....+-++-....+++.++++..+..+.++..-
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444556777777654 3445566666666666666666666666666667766666666665443
No 124
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=86.55 E-value=22 Score=31.25 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=41.1
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 99 DP-~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
.| ..+|+.=-..+.++|.++.....++.......+.++.+.+.++.+.-..|+...
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 367777777777778888877777777777788888888877777777665544
No 125
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.51 E-value=22 Score=31.35 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVL 126 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~ 126 (251)
+-++++++.+++..++.+.
T Consensus 95 lp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555543
No 126
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.31 E-value=73 Score=37.07 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
.+.+.+...+..+..++......+.+|+...+.++..+.+++..++.+.+-.
T Consensus 1491 renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1491 RENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666777777777777777777777777776643
No 127
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.13 E-value=48 Score=34.81 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
-.||+++..+.++.+.+++++++....-++|..+...|...+..+++
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999988888888884
No 128
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.99 E-value=27 Score=31.80 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHhhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 025526 86 VKSYANAILSSFE-DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 164 (251)
Q Consensus 86 ira~in~~lDk~E-DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAre 164 (251)
|++.....+++.- |++......|.++..........+..+..+-+.+..++..+..++..+..+ ++.|-+.
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~--------~~~Le~~ 245 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK--------NASLERQ 245 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc--------hhhhhhh
Confidence 4444444444332 455666666666666666666666666666666666666666666554443 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+-.-...+......++..+...+..+.+++..+......++++-
T Consensus 246 l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 246 LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444333
No 129
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=85.96 E-value=13 Score=37.69 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=33.6
Q ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 92 ~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
..-..+-||..+|++.=..-.+...++++.+-......+....++- -....+.+.++...
T Consensus 143 ~~~~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 143 KVDSQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred cccccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3334556899999877666666666666655555444443333332 14555555555554
No 130
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=85.76 E-value=26 Score=34.02 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
||++|..+.++-+.|.++++.-+.++++++
T Consensus 347 aLEEKaaLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 347 ALEEKAALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333
No 131
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.53 E-value=55 Score=34.94 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE----------SKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le----------~ki~e~k~k~~~LkAr~~~Ak 222 (251)
|..-+.+...+.....|....+..+++++.++..+-.++ ..++++..|.+.+.+....+.
T Consensus 368 r~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad 437 (1265)
T KOG0976|consen 368 RSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMAD 437 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444444444555555555554443333 346666666666665554444
No 132
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=85.25 E-value=15 Score=28.15 Aligned_cols=98 Identities=15% Similarity=0.252 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
|...+.++......+...+..+......++.+.+.....+.........+|..-.++|-.+.=.. .......+..++
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~---~~~~~~~l~~q~ 81 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ---KENKLKVLEQQL 81 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45555566666666666666666666777777777777777777777777766555444333222 223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKI 204 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki 204 (251)
+.++..+..+...+.-.+..+
T Consensus 82 ~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 82 ESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444444433
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=56 Score=34.74 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~ 145 (251)
+-...|++-|-|.+-.+...+..+..+.......-..++++..++.+
T Consensus 451 ~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666655544444333334444433333
No 134
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.94 E-value=34 Score=32.01 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 025526 130 KRLENKCKAAEQA 142 (251)
Q Consensus 130 k~le~k~~~~~~~ 142 (251)
+.++.+.+++.++
T Consensus 67 ~~LE~e~~~l~~e 79 (314)
T PF04111_consen 67 EELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 135
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.73 E-value=30 Score=31.22 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
+.+.+.++........+-.+-.....|+.+..++......+...+.. ....++.|+.+. ..++..+..+....+.
T Consensus 26 ~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~-~~eEk~~Le~e~----~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 26 EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM-QEEEKEQLEQEL----REAEAEIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444433332 122223333222 2334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
-......|+..+...+......+.++
T Consensus 101 ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 101 KEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 136
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.71 E-value=28 Score=30.82 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
...-+-.+.+++.++..+...+-.+.+....+..+.+.+...+.....+...| +..++..+
T Consensus 104 aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEa-------------------E~rAE~aE 164 (205)
T KOG1003|consen 104 AEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEA-------------------ETRAEFAE 164 (205)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-------------------hhhHHHHH
Confidence 33444555667777777777777777777777777777777666666644333 33333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
..+..++..++.|...+...+.++..++..++.
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 137
>PRK00846 hypothetical protein; Provisional
Probab=84.69 E-value=11 Score=28.44 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
-...++++..|+..+.-++..++.|...+.+....|..++.+...|.-|....+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677788888888888888888888888888888888888887777766554
No 138
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=84.67 E-value=20 Score=29.16 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (251)
=.+....++...++.+.......+.++..+.....++..+.......|=. ......+..-+..|...+..+...
T Consensus 13 l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I~~q~~~ 86 (147)
T PRK05689 13 LAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMT------SSWWINYQQFLQQLEKAITQQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788899999999999999999999898888877665555532 123344455555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
+..++..+......+.+...++
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~ 108 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRL 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555554444443
No 139
>PLN02718 Probable galacturonosyltransferase
Probab=84.66 E-value=7.9 Score=39.46 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.+|..+-|-.|+.|+++|..||.=+ .+|..+.-..-..++...+.+.+.-.-.| ..|.||=..+..+....+..+.
T Consensus 157 ~~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~ 232 (603)
T PLN02718 157 VQPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLY 232 (603)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHH
Confidence 3567888999999999999999876 67766667777778888888887776666 6666799999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
.-+.........+.+|+.-+..+|.+....+.+-
T Consensus 233 ~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~ 266 (603)
T PLN02718 233 KASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQA 266 (603)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999888877665543
No 140
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.52 E-value=35 Score=31.90 Aligned_cols=86 Identities=20% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C---HHHHHHHHHHHH
Q 025526 98 EDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-E---EDLAREALKRRK 170 (251)
Q Consensus 98 EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G-~---EdLAreAL~rk~ 170 (251)
.||+ .+.+-.+..++.-+...+... .......++.++.+++.+..+.+.+...=-.+. . +.-+........
T Consensus 140 ~dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~ 217 (362)
T TIGR01010 140 FDAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLIS 217 (362)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHH
Confidence 3785 566666555555444432222 223334555555555555555554443322222 1 222334444444
Q ss_pred HHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQ 185 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~ 185 (251)
+++.++..++.++..
T Consensus 218 ~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 218 TLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 141
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=84.41 E-value=5.5 Score=28.47 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 137 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 137 ~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
+.++....+|..-|..|-++||.+-||..+.--+.+++.+...+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677788889999999999999999999999888888776654
No 142
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.25 E-value=47 Score=35.99 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
|...+.+.+.+..-+..++........+...-..+..+|..++.++..|.+
T Consensus 327 l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~ 377 (1200)
T KOG0964|consen 327 LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA 377 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555455544444555555555554444443
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.11 E-value=30 Score=30.80 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 193 LVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 193 Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
....+.++...+.+.+.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 117 RQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333
No 144
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.99 E-value=8.7 Score=27.89 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
++++..|+..+.-++..+++|..-+.+-..+|..++.+...|..|...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666655555555555555555555555444
No 145
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.73 E-value=52 Score=33.16 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.+..+...+.+++..++.+.......+..|+......+.++.+++.+..
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444333
No 146
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.70 E-value=53 Score=33.29 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=4.9
Q ss_pred HHHHHHHHHhh
Q 025526 84 RVVKSYANAIL 94 (251)
Q Consensus 84 ~lira~in~~l 94 (251)
.++.+.+....
T Consensus 139 ~~lQ~qlE~~q 149 (546)
T PF07888_consen 139 QLLQNQLEECQ 149 (546)
T ss_pred HHHHHHHHHHH
Confidence 34445544443
No 147
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=32 Score=36.41 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 025526 103 ILEQAVLE 110 (251)
Q Consensus 103 mLdQ~Ire 110 (251)
+.+|.-|+
T Consensus 336 leeqqqre 343 (1118)
T KOG1029|consen 336 LEEQQQRE 343 (1118)
T ss_pred HHHHHHHH
Confidence 44444443
No 148
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.56 E-value=19 Score=27.95 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (251)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~ 188 (251)
-..+.+.+..+..+......++.++.+...-.+.+.. -...=..-| .++.+ .+..+-...++..++..+.
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG------~vfv~-~~~~ea~~~Le~~~e~le~ 77 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG------NVLVK-QEKEEARTELKERLETIEL 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh------hHHhh-ccHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666555555442 111111112 22222 3444445555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.+..+..++..++.++.+++.+...+
T Consensus 78 ~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 78 RIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555443
No 149
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.55 E-value=16 Score=36.23 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k 135 (251)
..-|+..|+++++++.+++..+..+.+..+.++.-
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777666666666554
No 150
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=83.31 E-value=21 Score=28.37 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (251)
+.=-+....+++..++.+.......+.++..+.....++......-...|-.-- ....+..-+..+...+..+.
T Consensus 8 l~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~------~l~~~~~f~~~l~~~i~~q~ 81 (141)
T TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSAL------ELSNYQRFIRQLDQRIQQQQ 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 334456677888999999999999999999999999999888776666662211 11233344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k 208 (251)
..+..++..+...+..+.+..
T Consensus 82 ~~l~~~~~~~e~~r~~l~~a~ 102 (141)
T TIGR02473 82 QELALLQQEVEAKRERLLEAR 102 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 151
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.30 E-value=48 Score=32.51 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
.||-+-+++..+.+..+....+.++.--++..++.+.+...+.|.-... |+..+.+|-.+... .+.....+..+.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~-Lq~e~~~l~e~~v~----~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNR-LQEENTQLNEERVR----EEATEKTLTVDV 85 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4555666666666666666666666655555555555555554433222 33333333222222 233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVF 235 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~ 235 (251)
...+.....+...++++..+-.++...-..|.-..+.-+-++++++....++
T Consensus 86 ~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~ 137 (459)
T KOG0288|consen 86 LIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLG 137 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444444445555555555555444444444444444455555544433
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.21 E-value=60 Score=33.54 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQV 125 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v 125 (251)
..-|+..|.++++++.+++..+..-
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555544
No 153
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=83.18 E-value=24 Score=31.13 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQ 124 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~ 124 (251)
+..|.-.+.+++..|.++......
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477888888888888888777665
No 154
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.15 E-value=20 Score=28.07 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA---QLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA---~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
+.+.-..+.+.++.+..+......++.++.+...-.+.++.=- .-=---|. .+.+ .+.++-...++..++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~------vlv~-~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN------LLVK-TDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch------hhhe-ecHHHHHHHHHHHHH
Confidence 4455566777777777777778888888887777766665421 11111122 2222 334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
..+..+..+..++..++.++.+++.+...+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666655555443
No 155
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.14 E-value=79 Score=34.86 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
...|.+...++.+++..+........++..+....+.+++.+-...
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 679 (1201)
T PF12128_consen 634 NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER 679 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443333333
No 156
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=33 Score=30.51 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
+--.|..||.||+.||+++..+...+...+.+...|+
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5567889999999999999999998888777766554
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.98 E-value=18 Score=27.42 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=53.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 96 k~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
.+.|.+.+|...|.|+++.=....+....+...+..++++...+..+...|+.+.+.-|-+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446678999999999999999999999999999999999999999999999998765543
No 158
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.96 E-value=76 Score=34.56 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 168 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 168 (251)
++-.+-+.-.|.+|++-+.++...+.....+-+.++.+++++..+.++-..-...+|...-..+.......
T Consensus 243 ~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~ 313 (1174)
T KOG0933|consen 243 EEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITRE 313 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence 34445566667788888888888888888888888888888777776666666666665555554444444
No 159
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=82.89 E-value=16 Score=31.27 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 127 ASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 127 A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~k 203 (251)
..-..+-.++...++..+....++..+.+..+.- .-.+.....++++.++.+++..+..++.|+.+.+.++..
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444445555555555555555443222211 122334445566666666666666666666666655543
No 160
>PRK00736 hypothetical protein; Provisional
Probab=82.51 E-value=12 Score=27.27 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
.++++..|+..+.-++..++.|..-+.+-...|..++.+...|.-|...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777776666655544
No 161
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.34 E-value=75 Score=34.05 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 025526 117 KMRQATAQVLASQKRLENKC---KAAEQASEDWYRKA 150 (251)
Q Consensus 117 kar~~lA~v~A~~k~le~k~---~~~~~~~~~~e~rA 150 (251)
+.|..++...+.+.++++-. ++.+..+--|+++-
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry 426 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRY 426 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555666666655555444 44444444444443
No 162
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=82.21 E-value=17 Score=30.21 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
.++.++.+....+.+-...-+.++...........+...++.--+..++
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 4444444444444455555555555555555555555555554454444
No 163
>PRK04406 hypothetical protein; Provisional
Probab=82.18 E-value=16 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
..++++..|+..+.-++..++.|..-+.+-...|..++++...|.-|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777888777777777777777777777655543
No 164
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.96 E-value=54 Score=33.68 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~ 144 (251)
-..++.|.+++|.+++..++...-..+.....|++++.++...+.
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888887777777777777777777766665554
No 165
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.93 E-value=26 Score=28.39 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
++.++++...+.+.+..+..+......++..+.++....+.++
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777766665554
No 166
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.90 E-value=84 Score=34.27 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+...+.++-++++++..+...+..+..++..+..++.+...+.+.
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666554
No 167
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=81.78 E-value=42 Score=31.52 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=71.4
Q ss_pred CHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 025526 99 DPE-KILEQAVLEMN-----------DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (251)
Q Consensus 99 DP~-~mLdQ~Ireme-----------~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 166 (251)
+|+ ..+.+.|.++. ++.+..+..+--.......++.+.+.+++..+++..+++.-...++|++ .-+
T Consensus 182 ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~--~~l 259 (307)
T PF15112_consen 182 IPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDS--KRL 259 (307)
T ss_pred ChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh--HHH
Confidence 674 55666666665 5566666667777788888999999999999999887776554443322 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.-..++-..-..|...+...-+.++.|..++.+++..|.+++.+-.
T Consensus 260 ~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~~~ 305 (307)
T PF15112_consen 260 EVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQMP 305 (307)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhhcc
Confidence 3344444444445544444446666666666677766666665543
No 168
>PRK00295 hypothetical protein; Provisional
Probab=81.65 E-value=17 Score=26.42 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
++++..|+..+.-++..++.|..-+-+-...|..++++...|.-|...
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666666554443
No 169
>PRK04325 hypothetical protein; Provisional
Probab=81.59 E-value=16 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
..++++..|+..+.-++..++.|..-+.+-...|..++++...|.-|...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777655544
No 170
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=81.21 E-value=55 Score=31.74 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (251)
.-...|.++++++..++..++++...-.-..-++...+.++...+.....-+..=-. ....+...++.+...+..+
T Consensus 282 ~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~----~~~~~~~~l~~~~~~L~~~ 357 (458)
T COG3206 282 LESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILA----SLPNELALLEQQEAALEKE 357 (458)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHH
Confidence 333456666666666666666666555544444444444444444433322211000 0000011233333334433
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVN---NLVSNTRLLESKIQEARSKKDTLKARAQSAKFVF 225 (251)
Q Consensus 183 l~~~~~~v~---~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~ 225 (251)
+...+.... +....+.+|+.+.+-.+.-.++|..|++....++
T Consensus 358 ~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 358 LAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333 3355667777777777888888888877777766
No 171
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=81.16 E-value=37 Score=29.66 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
..|++.++|.+.-+.+...+|...-.+..-..+-..+....+..+..-...+-.. -+-+. .--......+.+-..
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n--l~~a~---~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN--LANAE---QVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHH
Confidence 5567777777777777777777777666666666666666655555444433111 11111 111222333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVF 225 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~ 225 (251)
.++..+..++.|...+......++. .|..-++|--....+++
T Consensus 145 LLeaAk~Rve~L~~QL~~Ar~D~~~--tk~aA~kA~~AA~eAkq 186 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQLQAARADYEK--TKKAAYKAACAAQEAKQ 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 5555666666666666555554443 34445555555555544
No 172
>PLN02829 Probable galacturonosyltransferase
Probab=81.12 E-value=12 Score=38.29 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
+.+-|-.++.|+++|..||.=+ .+|..+.-+.=..++...+.+.+.-.-.|.. |.||=..+..+.+..+..+...+
T Consensus 178 ~~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak 253 (639)
T PLN02829 178 TVMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGK 253 (639)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHH
Confidence 3678999999999999999764 6776666777777888888887665555543 78888899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
.........+.+|+.-+..+|.+....+.+-
T Consensus 254 ~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~ 284 (639)
T PLN02829 254 QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQT 284 (639)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999888877665443
No 173
>PRK11281 hypothetical protein; Provisional
Probab=81.11 E-value=93 Score=34.29 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
..|++.+.+.++++.+.+..++..-+.--.++.+.++++..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55888888888888888777777755544444444444433
No 174
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.71 E-value=63 Score=32.12 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
....+..+..+...+...++-++...+..+..+.++|.|
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555543
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.53 E-value=71 Score=32.54 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (251)
+..|+.-.+.+++++.+.+..+........-.+..++.+..+++.-+...+. |++.+++|=.
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~-lq~~~d~Lk~ 322 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK-LQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4777888888888888888888888888888888888888888877777665 6666666643
No 176
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=80.51 E-value=33 Score=28.77 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+|+.+..++...-+.+.+.+++.+ .-.++...+.+..|.+++.....++...+.--.+. .....++-+..+..-+
T Consensus 31 l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~--~~~~~~~A~~ea~~~~ 108 (167)
T PRK14475 31 LPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRM--EAEAKEKLEEQIKRRA 108 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
+.++.+...+--.-..++..++..+--+...
T Consensus 109 ~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~ 139 (167)
T PRK14475 109 EMAERKIAQAEAQAAADVKAAAVDLAAQAAE 139 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.50 E-value=0.51 Score=37.61 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
+|.+|.++..++..+....+........++.++..+......+.+....|
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 57777777777777777777777777777777777766666665554444
No 178
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.35 E-value=18 Score=26.65 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
.++++..|+..+.=++..++.|..-+-+-...|..++++...|.-|...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777777777777776666555444
No 179
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=46 Score=34.18 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 119 RQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
|.++|.+.-....++.++...+..+.+.
T Consensus 344 RDALAAA~kAY~~yk~kl~~vEr~~~~~ 371 (652)
T COG2433 344 RDALAAAYKAYLAYKPKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456666655666666666666655544
No 180
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=80.31 E-value=20 Score=26.06 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.||+-+.+|+ |+++.|..+... .....+..=..+....+.........++..++-+-|+..+.+..-+..-..
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 4777666654 666777766321 111333334445555566666677777789999999999999877766655
Q ss_pred HHH
Q 025526 178 ALK 180 (251)
Q Consensus 178 ~l~ 180 (251)
.++
T Consensus 75 ~ik 77 (78)
T PF07743_consen 75 EIK 77 (78)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 181
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.21 E-value=56 Score=31.20 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE---EDLAREALKRRKSYADNA 176 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~---EdLAreAL~rk~~~e~~~ 176 (251)
|...-+..|.++..++.+.+..++.......--.-++..++.+++.++.+....+..-. +.--..+..+...++.++
T Consensus 248 ~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l 327 (444)
T TIGR03017 248 PEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREAL 327 (444)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666666666666666666543332223333333333333333222111100 000012223333444444
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLD---QQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 177 ~~l~~ql~---~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+.++.++. ..+.+...|+.++.-.+..+..+-.+.++....
T Consensus 328 ~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 328 ENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322 233344455555555555555555555555443
No 182
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.18 E-value=1.2 Score=35.54 Aligned_cols=64 Identities=9% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 89 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 89 ~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
-|+..||.+.+-...|...+.++...+..+...+...-.....+.+.+..++..+++....|..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 4556666666665666666667777777777666666666666666666665555555444443
No 183
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=79.65 E-value=35 Score=28.55 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=23.9
Q ss_pred cCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Q 025526 75 RMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKM 118 (251)
Q Consensus 75 ~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~ka 118 (251)
++|=.+|-+.+|-..+..+-++..+-..-+...|.++.+.+..+
T Consensus 69 raGe~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~ 112 (213)
T PF00015_consen 69 RAGEAGRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQISQV 112 (213)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhcccchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhh
Confidence 34444555666666666666665555555555555555554333
No 184
>PRK02119 hypothetical protein; Provisional
Probab=79.60 E-value=19 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
...++++..|+..+.-++..++.|..-+.+-...|..++++...|.-|...
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777777777777777777777777777777777777777555443
No 185
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=79.43 E-value=38 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
...+++.++...-..+-......+.++.+.+.++......++. .++.+++.+++..+..
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~-------~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKID-------SLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555554444444443333 2333455544444444
No 186
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.40 E-value=64 Score=31.39 Aligned_cols=17 Identities=0% Similarity=0.020 Sum_probs=8.5
Q ss_pred CCCchhHHHHHHHHHHH
Q 025526 233 PVFSASATSLVLLVMVA 249 (251)
Q Consensus 233 ~~~~~~a~~~f~~~~~~ 249 (251)
.......+-.|.-++++
T Consensus 333 n~~~r~~l~k~inllL~ 349 (395)
T PF10267_consen 333 NSRARALLGKLINLLLT 349 (395)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 33345555556555444
No 187
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.33 E-value=44 Score=29.42 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 90 in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
+...++.+||-..-|-..|.++..++.-..+ +.-..|-++.+++++...+..++....
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq----al~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQQ----ALQKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444444444444443332 222233344444444444444444333
No 188
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.32 E-value=20 Score=30.95 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.++.++..+.-+...+...+..++..-.++-.+--..+
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.24 E-value=23 Score=26.32 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=52.3
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 95 Dk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
..+.|...+|.-.|.|+.+.-....+.+..+.....-++++-.++..+...|+.+.+.-|-+
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34446778899999999999888888888888888999999999999999999998876543
No 190
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.07 E-value=56 Score=34.40 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQ 120 (251)
Q Consensus 107 ~Ireme~~L~kar~ 120 (251)
.|.+++++..+++.
T Consensus 516 li~~L~~~~~~~e~ 529 (771)
T TIGR01069 516 LIEKLSALEKELEQ 529 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 191
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.80 E-value=22 Score=25.59 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.+.+...+...-..+............|+.+|..++.+.+.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444444444443
No 192
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.68 E-value=1e+02 Score=33.97 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~ 121 (251)
+++.|.+.-+.+.++++.
T Consensus 70 ~~~~i~~ap~~~~~~~~~ 87 (1109)
T PRK10929 70 YQQVIDNFPKLSAELRQQ 87 (1109)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 333344433333333333
No 193
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=90 Score=32.62 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCH---------------HHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL-QKGEE---------------DLAREALK 167 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL-~~G~E---------------dLAreAL~ 167 (251)
..|.+.-+.++...+...++++.+....++..+..++.+..........-. +.... ..+..+-.
T Consensus 494 ~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~ 573 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQI 573 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555554444333322100 00000 01122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+....+.++.+++.++......++.+..+...++..+..++.+...++
T Consensus 574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555555555555555555555555555555555555555544
No 194
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.58 E-value=52 Score=29.86 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHHHhhc-ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILS-SFEDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lD-k~EDP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
|+++++.+.+++-++..-- +--|++ .-+..++...++.|..+.+-++++.-....+...+.++..-...|
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lw 101 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLW 101 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5778888877777776411 334554 667778888888888888888877776666666666665555554
No 195
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.51 E-value=32 Score=27.47 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
...+..++.....|+.+.+...+.+..|+.++..+...+...|.-+..|..|..-
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777777777777777777777777777777766666555555433
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.33 E-value=63 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
+..+..|+..|.+....+++|+..+..++
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.02 E-value=66 Score=30.79 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=63.2
Q ss_pred ccccccccccccCccceeEeecc-ccccCCCCcccccCCCcccccCchHHHHHHHHHHHHHHhhcccCCH--HHHHHH--
Q 025526 32 MVKKPLTTSFFNGGVGALKVTRL-RIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDP--EKILEQ-- 106 (251)
Q Consensus 32 ~~~~~l~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~M~if~Rl~~lira~in~~lDk~EDP--~~mLdQ-- 106 (251)
..++|+.++.-.||+..+..-.. +...++.. |.|.. + |++.++.+++.--+- ++.+++
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n----~~~~~-~------------irasvisa~~eklR~r~eeeme~~~ 231 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPPN----ASGKL-V------------IRASVISAVREKLRRRREEEMERLQ 231 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCCC----ccccc-c------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999874433222 22222221 22211 2 445444443322211 122222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 107 -AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 107 -~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.+.++..--.+++.....+.+.+..||+++..+++.++=+..+.+.|+.+-
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 233444444555566677778888899999999999888888888876654
No 198
>PRK11519 tyrosine kinase; Provisional
Probab=77.85 E-value=91 Score=32.30 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 025526 79 FDRLARVVKSYANA 92 (251)
Q Consensus 79 f~Rl~~lira~in~ 92 (251)
..++-..+..++.-
T Consensus 207 ~~~~~~~l~~~l~V 220 (719)
T PRK11519 207 TLGMINNLQNNLTV 220 (719)
T ss_pred HHHHHHHHHhcceE
Confidence 33455444444444
No 199
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.70 E-value=36 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 200 LESKIQEARSKKDTLKAR 217 (251)
Q Consensus 200 Le~ki~e~k~k~~~LkAr 217 (251)
|+..|.+++.+++.|..+
T Consensus 103 le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 200
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.52 E-value=28 Score=26.15 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (251)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (251)
+++..++.+.......+.++..+......+........ .|-. +.....+...+..+...+..+...+..++..
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~s------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGVS------VAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888866666555 3321 2223334444445555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 025526 197 TRLLESKIQEARSK 210 (251)
Q Consensus 197 l~~Le~ki~e~k~k 210 (251)
+......+.+...+
T Consensus 75 ~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 75 VEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55444444444433
No 201
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=77.37 E-value=64 Score=30.26 Aligned_cols=129 Identities=7% Similarity=0.084 Sum_probs=67.8
Q ss_pred CchHHHHHHH------HHHHHHHhhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARV------VKSYANAILSSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 76 M~if~Rl~~l------ira~in~~lDk~EDP-~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
+.+|.+.-.. +-.+++.+.+++.+= ...|.-.|.++++.|.+-+..+.+.......++..++.+.....++..
T Consensus 37 Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~ 116 (301)
T PF06120_consen 37 YYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGI 116 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4555555442 333444444444431 345666777777778777777777777777777777766665444422
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 149 KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 149 rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~ 205 (251)
.-...+...=.+ ..++..+...+...+...+..+.+...........+..++.+.-
T Consensus 117 ~~~~~~~n~~~~-~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 117 TENGYIINHLMS-QADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred CcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100000 22344444444555555555555555555555555555544444
No 202
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.35 E-value=66 Score=30.43 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
.-|-+.+.|.++.-......+..+...-..++.+++-++..+.+..-.- ..--++... ..-+.+=.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~-------~~~~~~~~~-------~ere~lV~ 133 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD-------EGIGARHFP-------HEREDLVE 133 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh-------ccccccccc-------hHHHHHHH
Confidence 4455666666655555554444433333333333333333333321111 111133333 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPV 234 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~ 234 (251)
+++.+..+..+|..+++.+-...+|+..+++.++-+..+ -...+|..++|-
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R--LN~ELn~~L~g~ 184 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR--LNHELNYILNGD 184 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 567778888888888888888999999999998766544 456677777763
No 203
>PLN02742 Probable galacturonosyltransferase
Probab=77.07 E-value=35 Score=34.41 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL-AREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdL-AreAL~rk~~~e~~~~~l~~q 182 (251)
.|-.++.|.++|.-||.=+ .+|..+.-..-..++...+.+.+.-.-.|..-++ .+ -..+..+.+..+..+...+..
T Consensus 72 ~~~~~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~-~~~~~~~~~~~~~m~~~i~~ak~~ 148 (534)
T PLN02742 72 ATSFSRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGE-PITVEEAEPIIRDLAALIYQAQDL 148 (534)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccc-cCCchhHHHHHHHHHHHHHHHHhc
Confidence 3556678999999998865 6777776677777778888877776666544333 22 367878888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
.......+.+|+.-+..+|++....+.+-
T Consensus 149 ~~d~~~~~~klr~~l~~~e~~~~~~~~q~ 177 (534)
T PLN02742 149 HYDSATTIMTLKAHIQALEERANAATVQS 177 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888777655443
No 204
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.02 E-value=91 Score=31.83 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
-......++..++..+..++..+......+..++..+..++.++..+..
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666666555544433
No 205
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.97 E-value=53 Score=29.15 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=37.7
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 025526 93 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREA 165 (251)
Q Consensus 93 ~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreA 165 (251)
++.+.-.|..+|.+.-|.+.....++.++...+..++|.+-.+++. --+.|+++-.+-.
T Consensus 3 lFgk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk--------------~AK~gq~~A~Kim 61 (224)
T KOG3230|consen 3 LFGKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKK--------------TAKQGQMDAVKIM 61 (224)
T ss_pred cccCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHcccHHHHHHH
Confidence 4456668999999888888888777666655555554444333322 2367887766544
No 206
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=76.94 E-value=64 Score=30.50 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v----~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (251)
-...|...+.|.+..+.+++.-++.. ......-+.++..+...+.+.-++|+..-..|+-|-|-.++.+...+..
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 44778888888888888887777766 2223333678999999999999999999999999999999988777775
No 207
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=76.81 E-value=52 Score=29.71 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS----QKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~----~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+.|+....++ +..-+..+ ...+++..|-.+++.+.+.++.+++.--+ .++...+++..-...-+|+.+++.
T Consensus 72 ~Ltri~~~hr~-iE~~lk~f--~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rK 147 (231)
T cd07643 72 ALTRMCMRHKS-IETKLKQF--TSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARK 147 (231)
T ss_pred HHHHHHHHHHH-HHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 45666666665 33333332 23667788888888888888888776544 556666666666666688888776
No 208
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.77 E-value=17 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.-.++.++.|-..+..+...++.|+..++.|..++.++.
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666666666666666666666554
No 209
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.73 E-value=1e+02 Score=32.40 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
|+...+++++...+++.....+...+.+++.++++++++-+++
T Consensus 520 L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 520 LSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443333
No 210
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.68 E-value=1e+02 Score=32.32 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=81.6
Q ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHH
Q 025526 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRR 169 (251)
Q Consensus 92 ~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr--eAL~rk 169 (251)
.++..-.+-+.-+.+-|.+++.++..+|..+..+.++..++.....++.+..+.++..-..--..=+|---| ..|...
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555566788899999999999999999999999999999999999988888776544321111111111 234455
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQK---NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~---~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.++|+.--.|++++..+. -..+.|+..++.|+..+.-++.+.+.+.
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666654433 2345556666666666666655555443
No 211
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=76.66 E-value=38 Score=27.23 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
++.|-.+...++.+.+..+...+..|..+...-+. ..+.+-+.|+.+.+.++
T Consensus 61 d~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 61 DEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444333 44444444444444443
No 212
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=76.52 E-value=47 Score=28.26 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
.+..+.+++.|...+..++...+.-.....+.......+.....+...-+..|.--. +.....+......+...+.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~----i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS----IDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHHHHHH
Confidence 455567778888888888888888888888888888888877777776666555432 3334444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 185 QQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
..+.++..+...+....++|..+.+.+..+.++
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~ 122 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIARNDAR 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555555555555555555544444433
No 213
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.48 E-value=1.1e+02 Score=32.54 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
.......+..++......+.+++.+.
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 338 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKL 338 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555
No 214
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.39 E-value=1.4e+02 Score=33.58 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
++..++.....+..++.++.+...+...
T Consensus 887 ae~~l~~~~~e~~~~~~e~~~a~~~l~~ 914 (1353)
T TIGR02680 887 AESDAREAAEDAAEARAEAEEASLRLRT 914 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 215
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=76.14 E-value=23 Score=27.24 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLV 243 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f 243 (251)
+.+++....+|....+.++.++....+..+.++.+++-.+...+++.++-.+++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L 78 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQL 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHH
Confidence 445555677777788888888888888888899999999999999888876654
No 216
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=76.00 E-value=12 Score=29.69 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCCHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLARE 164 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~--------rA~~AL~~G~EdLAre 164 (251)
.-+++.|.++-+++.+++..+..++.+-..|+.+-..++..+.+.+. ....-+..|.+.||+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 44889999999999999999999999999999999999999988865 3334466777777763
No 217
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=75.97 E-value=23 Score=36.41 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (251)
-+.+-|-.++.|+++|.-||.= -.+|..+.-..-..++...+.+.+.-.-.| ..|.||=..++.+.+..+..+...
T Consensus 191 ~~~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a--~~d~dlp~~~~~k~~~M~~~l~~a 266 (657)
T PLN02910 191 ESPNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEA--TSDAELHSSALDQAKAMGHVLSIA 266 (657)
T ss_pred cccCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhc--ccccccCchHHHHHHHHHHHHHHH
Confidence 3467788899999999988875 445555555555666666666666555544 377888889999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
+.........+.+|+.-+..+|.+....+.+-
T Consensus 267 k~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs 298 (657)
T PLN02910 267 KDQLYDCHTMARKLRAMLQSTERKVDALKKKS 298 (657)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999988888888877665443
No 218
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.86 E-value=43 Score=27.46 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHH---hhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANA---ILSSFEDPEKILEQAVLEMNDDLVKMRQATA 123 (251)
Q Consensus 78 if~Rl~~lira~in~---~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA 123 (251)
+|+.+..++...=.. .++.++.-..-++....+.++.+.+++....
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~ 76 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666544333 3333333345555555566666666655533
No 219
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.85 E-value=34 Score=26.34 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.-..++.+..+++.++.+.+...+....+...|
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 344456666666777777777777777777776
No 220
>PRK00295 hypothetical protein; Provisional
Probab=75.81 E-value=28 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.-.++.++.|-..+.++.++++.|+..++.|..++.++
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666666666666666665555554
No 221
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=75.62 E-value=55 Score=28.64 Aligned_cols=55 Identities=9% Similarity=0.159 Sum_probs=31.6
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
+|. .+|++-=..+.+.+.++.....++.......+.++.+.+.++.+.-..|+..
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~e 126 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYE 126 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 452 5555555566666666666666555555555666666655555555555443
No 222
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.59 E-value=1.1e+02 Score=31.88 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALK 180 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~ 180 (251)
...+.+..+++.++..++
T Consensus 307 ~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 307 KAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555544444
No 223
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=75.59 E-value=61 Score=29.12 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=40.3
Q ss_pred ccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Q 025526 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-------------KAAE 140 (251)
Q Consensus 74 ~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~-------------~~~~ 140 (251)
.+-+|+.++..+-..+ -++.+++-..-|.+...+.++.|.+++..+..-..+-..+..++ ..+.
T Consensus 7 lP~~l~~~~~~v~~~~---g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~ 83 (296)
T PF13949_consen 7 LPPSLLEKSEEVRSEG---GIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLR 83 (296)
T ss_dssp --HHHHHHHHHHHHTT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHH
T ss_pred CChHHHHHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHH
Confidence 3445666666555332 23333333344555555555666666665555555555555555 4555
Q ss_pred HHHHHHHHHHHHH
Q 025526 141 QASEDWYRKAQLA 153 (251)
Q Consensus 141 ~~~~~~e~rA~~A 153 (251)
..+.++......|
T Consensus 84 ~~l~~~~~~L~~A 96 (296)
T PF13949_consen 84 KELQKYREYLEQA 96 (296)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 224
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=75.33 E-value=1.7e+02 Score=34.04 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-H---------HHHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-E---------DLAREALKRRKSYADN 175 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~-E---------dLAreAL~rk~~~e~~ 175 (251)
-.|+.++.++...+..+....+.-......++-++.....|-.|...-+.+-. - +.....=.++..-+..
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~ 1329 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENL 1329 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555666667777788888888887777622 1 1112222222223333
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 176 ~~~l~~ql~~~~----~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq 224 (251)
++.+...+...+ .+++.+......+..++.+++....-|.+...-..++
T Consensus 1330 ~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1330 IAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 4444455555555555555555555555554444444
No 225
>PTZ00464 SNF-7-like protein; Provisional
Probab=75.24 E-value=59 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 124 QVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
.++..++.+|.+++.+......++..
T Consensus 65 ~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 65 QLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555555555555443
No 226
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=75.17 E-value=52 Score=28.17 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
..||+-+++|+ |.+++|.++... .....++.-..+....+..+......++..++-+-|...+.+..-+.+-.
T Consensus 88 ~~d~~fLme~M--E~rE~lee~~~~-----~d~~~L~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~ 160 (173)
T PRK01773 88 TQDMAFLMQQM--EWREQLEEIEQQ-----QDEDALTAFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLI 160 (173)
T ss_pred CCCHHHHHHHH--HHHHHHHhhccc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34665555544 344444443211 01223334445556666666777778888999999988888876665554
Q ss_pred HHHHH
Q 025526 177 NALKA 181 (251)
Q Consensus 177 ~~l~~ 181 (251)
..+..
T Consensus 161 ~ei~~ 165 (173)
T PRK01773 161 IEIER 165 (173)
T ss_pred HHHHH
Confidence 44433
No 227
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=75.04 E-value=63 Score=29.02 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A-----~~k~le~k~~~~~~~~~~~e~r 149 (251)
..|.+.|..+...+..+-..+...-. ....+.+.+++++...++...+
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555444443333 3445555566666655555554
No 228
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=74.71 E-value=64 Score=28.96 Aligned_cols=65 Identities=12% Similarity=0.254 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
||+++++.|.+ +--++++|+ .-..+||.+++.+|.++-..+-.+...++.+-.-+.+...-+..+
T Consensus 2 ~~~~~~~~~~~----~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L 69 (234)
T cd07664 2 MVNKAADAVNK----MTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAML 69 (234)
T ss_pred hhhHHHHHHHh----ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665544 344555543 567789999999999998888888888777766666655544433
No 229
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.68 E-value=58 Score=28.45 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
...-...+...+..|...+..|..+|.+
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 230
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=74.43 E-value=45 Score=27.02 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 025526 112 NDDLVKMRQA 121 (251)
Q Consensus 112 e~~L~kar~~ 121 (251)
.+.+.++...
T Consensus 32 ~~~l~~A~~~ 41 (147)
T TIGR01144 32 ADGLASAERA 41 (147)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 231
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.37 E-value=1e+02 Score=31.25 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH---------HHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR---------EALKRRK 170 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr---------eAL~rk~ 170 (251)
+-.+.+-.|..+...|.+.....+++..+..+++.+++++.....+-++.+.-+=.+-++.+.+ -+..++.
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3466666666677777777666666666666666666666666666655555544444432221 2344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTR-------LLESKIQEARSKKDTLK 215 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~-------~Le~ki~e~k~k~~~Lk 215 (251)
.+++....++.+......++..++..+. .++.+++++..+++.++
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666666666666666666666665443 33444444444444444
No 232
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.26 E-value=44 Score=30.37 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
-+.-+..|.|.......+|++.++++...+..++++.+.|++
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666666666555554
No 233
>PRK02793 phi X174 lysis protein; Provisional
Probab=74.25 E-value=30 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
|..++|.++.=.+..++.+...+.+....+..|+.++..+..+...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444433
No 234
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=74.24 E-value=1.2e+02 Score=31.89 Aligned_cols=98 Identities=9% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL--------QKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL--------~~G~EdLAreAL~rk~~~e~~ 175 (251)
||+.+.+.-..+-++-..+..+..+...++.++....+.+++.+......+ -+++-+.|++.|.+-.....-
T Consensus 54 le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l 133 (766)
T PF10191_consen 54 LEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTL 133 (766)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444444444445555555555555555666555555555444333222 234455666666655444433
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQ-----LDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 176 ~~~l~~q-----l~~~~~~v~~Lk~~l~~Le 201 (251)
..+++.- ++.....+.+++..+..+.
T Consensus 134 ~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~ 164 (766)
T PF10191_consen 134 SAEVDDLFESGDIAKIADRLAEMQRSLAVLQ 164 (766)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 3333322 2334445555555555443
No 235
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=74.02 E-value=42 Score=26.53 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
+.+.++.+..+.+....+...+.++...
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444333
No 236
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.88 E-value=64 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
++.+.++|.+.+..-......+..++.++.++-..+...+....++..+-.
T Consensus 50 Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 50 EKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456777777777776666667777777777777777666666666555544
No 237
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.73 E-value=16 Score=25.82 Aligned_cols=39 Identities=5% Similarity=0.206 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
..++|..+..++..+..++.+.++++..+..++..++++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777666666666666666666444
No 238
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.64 E-value=1.5e+02 Score=32.62 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhC
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR-----AQSAKFVFPLSLLEF 232 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr-----~~~AkAq~~vn~~l~ 232 (251)
...+.+..++++.+..++.++.........|...+..++.-+.+.+...+.|.-. ...+.....+...+.
T Consensus 398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ 472 (1141)
T KOG0018|consen 398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLD 472 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3445566777777777777777766666666666666666666666655555533 333444444444443
No 239
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=73.62 E-value=54 Score=27.60 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=28.9
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
.|. .+|+.==..+.+.+.+++.....+.......+.++.+.+.++.+.-..|+
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~ 95 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK 95 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 563 66666656666666666655555555555555555555544444444444
No 240
>PF13514 AAA_27: AAA domain
Probab=73.49 E-value=1.4e+02 Score=32.47 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 155 (251)
.......++.++..++..+..|+.++..-+.
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666554443
No 241
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=73.39 E-value=52 Score=27.33 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
.+|+.==..+.+++..+...-..+.......+.++.+.+.++.+.-..|+...++
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~ 89 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARA 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566555666666666666666666666666666666666666666666554433
No 242
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.30 E-value=30 Score=24.54 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLL 230 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~ 230 (251)
+++...|..|..++.+|...+..++... ..|+..+++|-+++.-.
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v--~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADV--QAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444322 24555666666666543
No 243
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.20 E-value=86 Score=30.39 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
|.|..+|+-++....+-...+-..++.+ +++ +++-....-++++..|+.| ..||+-.| ..-.++..+.++++
T Consensus 85 ~spl~iL~~mM~qcKnmQe~~~s~LaAa---E~k---hrKli~dLE~dRe~haqda-aeGDDlt~-~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 85 ESPLDILDKMMAQCKNMQENAASLLAAA---EKK---HRKLIKDLEADREAHAQDA-AEGDDLTA-HLEKEREQLQQQIE 156 (561)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHhhhh-hccchHHH-HHHHHHHHHHHHHH
Confidence 3477777766655554444443333332 222 2222333344566667765 45554333 23233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQE------ARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e------~k~k~~~LkAr~~~AkAq 224 (251)
=-..+...++..-++|..++.+-+.+.+. +..|+..+++-+.-.+|.
T Consensus 157 Fe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ 209 (561)
T KOG1103|consen 157 FEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAE 209 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333333444444444444333322222 234455555555544444
No 244
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.18 E-value=1.1 Score=46.14 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~~~~~l~~ 181 (251)
.+...++++++++.+..............++..+.+++...++|...|..|-.--|| |..|+-..+...++..++.|++
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777766666666666666778888889999999999999988776666 8888888888888888888877
Q ss_pred HHHH
Q 025526 182 QLDQ 185 (251)
Q Consensus 182 ql~~ 185 (251)
-++.
T Consensus 323 KLed 326 (713)
T PF05622_consen 323 KLED 326 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 6654
No 245
>PRK04406 hypothetical protein; Provisional
Probab=73.13 E-value=33 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
++.++.|-..+..+..+++.|+..++.|..++.+
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444555555555555444444443
No 246
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.83 E-value=62 Score=27.99 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 025526 82 LARVVKSYAN 91 (251)
Q Consensus 82 l~~lira~in 91 (251)
+++++.+-++
T Consensus 32 VKdvlq~LvD 41 (188)
T PF03962_consen 32 VKDVLQSLVD 41 (188)
T ss_pred HHHHHHHHhc
Confidence 5666666655
No 247
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.75 E-value=51 Score=26.99 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
++..++..+++....++.+...+..|+.||.++
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 248
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=72.72 E-value=39 Score=28.09 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
-.++.++..++.++.....+++.++..+.+....+......|++++.....+...
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777776666666666666666655555555555555555444443
No 249
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=72.71 E-value=53 Score=27.13 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+|+.+..++...-+.+.+.+++.+ .-.++...+.+..+.+++......+.+.+.--.+. .+...++-...|..-+
T Consensus 26 ~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~--~~~i~~~A~~ea~~~~ 103 (159)
T PRK13461 26 FFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENV--YEEIVKEAHEEADLII 103 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
+..+.++..+--.-..++..++..+--.+..
T Consensus 104 ~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~ 134 (159)
T PRK13461 104 ERAKLEAQREKEKAEYEIKNQAVDLAVLLSS 134 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 250
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.16 E-value=1e+02 Score=30.30 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
..+|-++.++..++.......-.-....++++..+.++.....+...+=..++..+++
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~ 205 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNK 205 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666667777888888888877777777777777766664
No 251
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=72.15 E-value=59 Score=27.40 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATA 123 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA 123 (251)
.++.+.+.+..+.+++....
T Consensus 68 A~~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 68 AEAILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 252
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.91 E-value=88 Score=29.30 Aligned_cols=142 Identities=20% Similarity=0.296 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA------TAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~------lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
+.+=..+..+-.-.-+..+...+ +.-|-|.|-+++..|..++.. +..+.+....+..+..++...+..+-++
T Consensus 110 ~~ler~i~~Le~~~~T~~L~~e~--E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~e 187 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLTPEE--ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANE 187 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444443322 355667777777777776643 4444455555555555555555555444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 150 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 150 A~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq 224 (251)
|..- -+++. .+..+.-.+.+.+..|-..+......++.+...+..++..|.++......|.+.....+..
T Consensus 188 aqe~----he~m~-k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~ 257 (294)
T COG1340 188 AQEY----HEEMI-KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRR 257 (294)
T ss_pred HHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4221 11222 3445555666667777777777777777777777777777777777777666665555443
No 253
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=71.91 E-value=1.1e+02 Score=30.27 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcccC----------CHH---HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 025526 80 DRLARVVKSYANAILSSFE----------DPE---KILEQAVLEMNDDLVKMR-----QATAQVLASQKRLENKCKAAEQ 141 (251)
Q Consensus 80 ~Rl~~lira~in~~lDk~E----------DP~---~mLdQ~Ireme~~L~kar-----~~lA~v~A~~k~le~k~~~~~~ 141 (251)
..+.++.+..+.-..|... ||+ .+-+-.+.+.|+-++++- ..+.-+..+.+..+.++.+.+.
T Consensus 184 E~l~~Yy~~~V~V~~D~~sGIi~l~V~AF~PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~ 263 (434)
T PRK15178 184 DDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARL 263 (434)
T ss_pred HHHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566555566432 674 444445555555554443 2344455555666666666666
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN-------VVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 142 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~-------~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
....+.++-.. ++- +.-+...+.-...++.++..++.+++.+.. ++..++..+..|+.+|.+.+.+.
T Consensus 264 aL~~fRn~~gv-lDP--~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 264 ELLKIQHIQKD-IDP--KETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHhCCC-cCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 66666554321 111 222334445555666666666666665533 45555555666665555555554
No 254
>PRK11020 hypothetical protein; Provisional
Probab=71.79 E-value=52 Score=26.64 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 132 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
+..++..+....+....+-..|...||.++-.+...++..++.+++.++....
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888999999999988888888888888777776543
No 255
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.62 E-value=19 Score=32.75 Aligned_cols=43 Identities=5% Similarity=0.084 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
++..+++.++.++.++..+++++..++.+++.+-.++-..++.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444
No 256
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.60 E-value=38 Score=24.99 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 127 ASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 127 A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
.+...++.+...+..+...|+.+...-|
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666555443
No 257
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.16 E-value=72 Score=31.65 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 83 ARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 83 ~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
...-+-++|.+..++|. -.-.+|.+.|+++.|.+++..--.+-.++..+|++++++
T Consensus 237 nk~akehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 33445566666666554 345789999999999999998777888888888888733
No 258
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=71.09 E-value=48 Score=25.98 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNL--VSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 179 l~~ql~~~~~~v~~L--k~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
.+..++..+..++.| ..++.+|+-.+.+++.+...+.++.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444444444444 4444444444444444444444443
No 259
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.98 E-value=79 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 114 DLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (251)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~ 145 (251)
++.+.+..+...+...+..+.-+.++.++.+.
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~ 43 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEE 43 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555554443
No 260
>PRK02119 hypothetical protein; Provisional
Probab=70.86 E-value=39 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.++.++.|-..+..+.++++.|+..++.|..++.++
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555555443
No 261
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=70.80 E-value=82 Score=28.52 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=70.1
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 98 EDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 98 EDP~--~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
-||. .||++++.. +.++.......-....+.-+.+..++..+..++++-..++.+-+ -|-+.
T Consensus 115 ~D~~wqEmLn~A~~k----VneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr------------PYfe~ 178 (239)
T PF05276_consen 115 FDPAWQEMLNHATQK----VNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR------------PYFEL 178 (239)
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHH
Confidence 4774 777766654 44556666666667777777888888888888888777776533 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
-..+..+++.+...|..|...+...+..+...-..++.+--..
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777777777666666666655443
No 262
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.77 E-value=87 Score=28.77 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 83 ARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA 127 (251)
Q Consensus 83 ~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A 127 (251)
..-.++.++++-++.+.-..-|.|.+.+++..|.++...+.-+..
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666777888888888888888888765544
No 263
>PRK00736 hypothetical protein; Provisional
Probab=70.75 E-value=38 Score=24.60 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.-.++.++.|-..+..+..+++.|+..++.|..++.++
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666666666666666666666666554
No 264
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.69 E-value=1.5e+02 Score=31.36 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~ 140 (251)
|..+++.+-.-+.++-.+...-+.+....++.++.+..+++
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~ 540 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAE 540 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333333333334444444443333333333
No 265
>PRK04325 hypothetical protein; Provisional
Probab=70.59 E-value=40 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.-.++.++.|-..+.++..+++.|+..++.|..++.++
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666665555554
No 266
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=70.59 E-value=29 Score=29.07 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.++++-++.|+..++.+.....++...+.+|..++..+..+...+..+...++
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~ 142 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQ 142 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677778888888888888888888888888888877777766655443
No 267
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.43 E-value=64 Score=30.31 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 162 AreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
+.++-..+.+++..+......++.+...+..|+
T Consensus 70 ~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 70 AKEIEEIKEEAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555566667777777777777776666664
No 268
>PRK12472 hypothetical protein; Provisional
Probab=70.36 E-value=1.2e+02 Score=30.36 Aligned_cols=102 Identities=22% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (251)
|......+..+.++.+.+....+|+..+....+...-++....| +-|+.-+ .+..+++..+.++.+...+++..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a--~~d~~~~-~a~~~~~~~~~~~~~a~~~~~~a~~~ 284 (508)
T PRK12472 208 EAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAA--KTDEAKA-RAEERQQKAAQQAAEAATQLDTAKAD 284 (508)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555556666666666655555554433332221 2233333 44468888888999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.+.-.......+.....+..++.+.
T Consensus 285 ~~~~~~~~~~~~~a~~~a~~~~~~~ 309 (508)
T PRK12472 285 AEAKRAAAAATKEAAKAAAAKKAET 309 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 8777777777666666666655544
No 269
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=70.16 E-value=1e+02 Score=29.43 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025526 138 AAEQASEDWYRKAQLA 153 (251)
Q Consensus 138 ~~~~~~~~~e~rA~~A 153 (251)
.+.....+|+.+..++
T Consensus 128 ~l~~a~~~~~R~~~L~ 143 (352)
T COG1566 128 DLDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555566777777765
No 270
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.99 E-value=28 Score=31.61 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH-------------hcCCHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR-------------KAQLAL-------------QKGEEDLA 162 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~-------------rA~~AL-------------~~G~EdLA 162 (251)
.+++.++.++...+.+....-.+||.++...+.....-.. ...... ..++..+-
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4566677777777777777777777777776644111100 000000 02455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
--.-..+-++.....+|++++..+.+.+..|+..+..|+..=-++--|..-|.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777778888888888888888888888888888888765444444444443
No 271
>PRK11519 tyrosine kinase; Provisional
Probab=69.84 E-value=1.4e+02 Score=30.89 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 025526 212 DTLKARAQSAK 222 (251)
Q Consensus 212 ~~LkAr~~~Ak 222 (251)
+.|..|.+.++
T Consensus 387 ~~lL~r~~e~~ 397 (719)
T PRK11519 387 MQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 272
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.74 E-value=26 Score=34.90 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
++|++++.++.+++........+++.|++++..++.++.+.+.+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555556666666665555433
No 273
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=69.67 E-value=24 Score=27.75 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+|+.+..++...-+.+-+..++.+ .-.++...+.++.+.+++......+...+.--.+..+. ...+.+..+..-+
T Consensus 20 ~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~--~~~ea~~~~~~~~ 97 (132)
T PF00430_consen 20 LYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE--ILAEAEKEAERII 97 (132)
T ss_dssp THHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
..+.+++.++.-.-+.++..++..+-..+..
T Consensus 98 ~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~ 128 (132)
T PF00430_consen 98 EQAEAEIEQEKEKAKKELRQEIVDLAVDIAE 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 274
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=69.48 E-value=81 Score=27.94 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=55.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhcCC----
Q 025526 95 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ------------LALQKGE---- 158 (251)
Q Consensus 95 Dk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~------------~AL~~G~---- 158 (251)
|+.++--..+-+.+.+.++.-.+.....--+-..-.+++.+++.++.+..+-..-|. +++-.|+
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333344455556666666655555554432222233333333333333222222222 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
++-|..+......++.....+...+..+....+.+.......+.+|..+-.|+..--
T Consensus 101 eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 101 EERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 344455555555556655555555555555555555555555555555544444333
No 275
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.41 E-value=1e+02 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
..|..-++.++++-...|.........-..+|.+-..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 78889999999999999988888887766666664444
No 276
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.37 E-value=95 Score=28.65 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
++.|...|..+.+++.+.++.+..+-+++..++.+++....+.+.-++|-.. |++=+.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vRP 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCh
Confidence 5788889999999999999999999999999999999998888887777654 554443
No 277
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.35 E-value=80 Score=27.79 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 80 ~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
+.||++|+.. .....+.+...+.+. -..|....-.-+++-+.+..+++.+...+..+..++.....+-....
T Consensus 72 k~fWRViKt~------d~~~AE~~Y~~F~~Q-t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~- 143 (192)
T PF11180_consen 72 KAFWRVIKTQ------DEARAEAIYRDFAQQ-TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ- 143 (192)
T ss_pred CceeEeeecC------ChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4567777543 111223333333322 23455555566677777778888888777777777666555433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 160 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 204 (251)
Q Consensus 160 dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki 204 (251)
++..+.....+++..|+.+......++++|...+..|+.+.
T Consensus 144 ----~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 144 ----QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666666666666666666543
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.33 E-value=71 Score=31.83 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
+.|=-.+++++.++.++...=..+..+-++|+++......+++.--+.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 333344444444444444444444444444444444444444333333
No 279
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=69.15 E-value=66 Score=26.72 Aligned_cols=106 Identities=12% Similarity=0.205 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+|+.+..++...=+.+-+.+++.+ .-.++...+.+..+.+++......+...+..-.+. .....++-+..+..=+
T Consensus 29 l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~--~~~~~~~A~~ea~~~~ 106 (164)
T PRK14471 29 AWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKM--IADAKEEAQVEGDKMI 106 (164)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
...+.++..+-..-..++..++..+--....
T Consensus 107 ~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ 137 (164)
T PRK14471 107 EQAKASIESEKNAAMAEIKNQVANLSVEIAE 137 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 280
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=69.05 E-value=69 Score=26.97 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (251)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~ 191 (251)
.....++...+..+.......+.++..+...-.+++.+...=+..|= ...+...|+..+..|+..++++...+.
T Consensus 15 ~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~~ 88 (148)
T COG2882 15 KKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQLS 88 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888888888888888888888777666663 344667888899999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+...+.+......+.+.+...+.
T Consensus 89 ~~~~~ve~~r~~w~ek~~~~k~~e 112 (148)
T COG2882 89 KLRKQVEQKREIWQEKQIELKALE 112 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777776665554
No 281
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.81 E-value=75 Score=30.92 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
+...-.+++.+..+++.++.+.++..+........
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~ 64 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKRK 64 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455566666666666666666666543333
No 282
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.64 E-value=1.6e+02 Score=31.14 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 186 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~ 186 (251)
.-.||+..|...+.++...-.....+...++.+....+.-+.....+-. -.-.+-.++..+...+..+...++..
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~-----~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA-----QIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555444444444444444444444444333332222110 11123344455556666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
+..+..|...+..|+..+.+-..+.+.++.|..
T Consensus 391 e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 391 ERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777766666666665555665555554
No 283
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=68.51 E-value=1.1e+02 Score=29.12 Aligned_cols=28 Identities=0% Similarity=0.043 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
+++..+..++..+..++..+.++...+.
T Consensus 159 ~ld~a~~~~~~a~a~l~~a~~~l~~~~~ 186 (390)
T PRK15136 159 ELQHARDAVASAQAQLDVAIQQYNANQA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555544444444443
No 284
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.45 E-value=1.1e+02 Score=29.21 Aligned_cols=114 Identities=10% Similarity=0.107 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195 (251)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~ 195 (251)
...|..+.+.....+.++..+.+.....+++.......|++ .-.|-+.+..+++.+-++|........+++.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lek--------I~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEK--------IESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666655555442 2333334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhH
Q 025526 196 NTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASA 239 (251)
Q Consensus 196 ~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a 239 (251)
.++++..-+.++...+..+.-... +.++.|.+..+++..+++
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe--~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELE--QVKQEMEERGSSMTDGSP 329 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCCCCH
Confidence 444444444444444444433322 223334444444444444
No 285
>PRK01156 chromosome segregation protein; Provisional
Probab=67.97 E-value=1.7e+02 Score=30.93 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
-.+....+..+..+...+...+..++.+..++..++.++.+++.....+.
T Consensus 680 ~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~ 729 (895)
T PRK01156 680 EDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555544444433
No 286
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.87 E-value=1.1e+02 Score=28.86 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQ-QKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~-~~~~v~~Lk~~l~~Le~k 203 (251)
+...+...-..++..+++ ++-.|.+|...+..|+.+
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444455555544 444566666666666543
No 287
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.84 E-value=89 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~ 205 (251)
....+...+..+..++..+.
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333
No 288
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.56 E-value=1.1e+02 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
|-.-+.|...+|++++.+....-+.+-+ .++.++.+++....+++
T Consensus 21 l~~~ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~ 65 (333)
T KOG1853|consen 21 LHHEYKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLE 65 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455666667777777776666555433 34444444444444433
No 289
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.27 E-value=1.7e+02 Score=30.78 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
..+|+=|.--=-.++..=|..+|.-...|-..+++.+.++..++.++......-.+|..+++.+...
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l 322 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKL 322 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455544433233334445566777788888999999999999999998888888888888877774
No 290
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.27 E-value=38 Score=31.82 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (251)
..++..++.++...+..++.+..-+..|.....+=...+.+++.+...|....=.+
T Consensus 262 ~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~lla 317 (344)
T PF12777_consen 262 QKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLA 317 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 44566677777777777888888888887777777777777777777776554443
No 291
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.26 E-value=1.5e+02 Score=30.30 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ------LALQKGEEDLAREALKRRKSYAD 174 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~------~AL~~G~EdLAreAL~rk~~~e~ 174 (251)
..-|...|.++..++.++...+.......+++..+..+.....+.++.... .=|..+++.+++ .-.-...-.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~k-L~~~v~~s~~ 408 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAK-LQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHH
Confidence 356666677777777777777666666666666666666665555544433 224445554422 1122223344
Q ss_pred HHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQ 186 (251)
Q Consensus 175 ~~~~l~~ql~~~ 186 (251)
.+..|..+++.+
T Consensus 409 rl~~L~~qWe~~ 420 (594)
T PF05667_consen 409 RLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 292
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.17 E-value=66 Score=25.98 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
-+.-++..++.+...++.+...+..+..+++++......+.
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 293
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=67.15 E-value=1.1e+02 Score=29.80 Aligned_cols=14 Identities=0% Similarity=0.114 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 025526 135 KCKAAEQASEDWYR 148 (251)
Q Consensus 135 k~~~~~~~~~~~e~ 148 (251)
+++.++.+.+...+
T Consensus 45 ~~~~l~~erN~~sk 58 (418)
T TIGR00414 45 EIEELQAKRNELSK 58 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 294
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=67.12 E-value=34 Score=31.10 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
..+++.+++.++..|.+|+..++++..++++++.+...+-....
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888888887776666655443
No 295
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=67.08 E-value=1.1e+02 Score=28.62 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQAT 122 (251)
Q Consensus 107 ~Ireme~~L~kar~~l 122 (251)
.+..++.++.+++..+
T Consensus 100 ~~~~~~a~l~~~~~~l 115 (370)
T PRK11578 100 QIKEVEATLMELRAQR 115 (370)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 296
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.97 E-value=1.8e+02 Score=30.94 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLV-----KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ------KGEEDLAREALKRRK 170 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~-----kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~------~G~EdLAreAL~rk~ 170 (251)
+||+|.+||-+..-. ..--.+..+...-..++.++++..+..+.++.+-+.-++ ..+-.+...+..+-.
T Consensus 404 rilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~ 483 (861)
T PF15254_consen 404 RILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQ 483 (861)
T ss_pred HHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555443331 112235555555556666666665555555433332221 111224444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.+.+.-..++-+....+-.+++.-.+++.++-|+++.+.+-.
T Consensus 484 ~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~ 525 (861)
T PF15254_consen 484 ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQ 525 (861)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 333444444444444444555555555555555554444333
No 297
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=66.87 E-value=99 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
..=++.|++-++...+-|..-+..|+..+.+.
T Consensus 200 ~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~ 231 (244)
T cd07595 200 IDLIEAQREYHRTALSVLEAVLPELQEQIEQS 231 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666666666555543
No 298
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.77 E-value=51 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.+++++..|+-.+.-+++.+++|...+.+...-+..++.+.+.|.-|
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~k 51 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEK 51 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666555555444
No 299
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.76 E-value=85 Score=27.14 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
++.|+++-++-.+++. ..+.+..+.-.-....+...........-..++.+..++...+.+|..+....-+..
T Consensus 85 LL~rvrde~~~~l~~y-------~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAY-------QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (251)
.+..+ .+.+.+.+.+.-|+.+-.++..+++.+
T Consensus 158 ~e~~~----~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 158 EELRQ----EEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
No 300
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.61 E-value=29 Score=23.32 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
|...+.|+..++.+....+.|......|...+..++
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 301
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.59 E-value=1.4e+02 Score=29.52 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSY 89 (251)
Q Consensus 78 if~Rl~~lira~ 89 (251)
...++++++.++
T Consensus 118 ~~~~~f~i~~~q 129 (447)
T KOG2751|consen 118 VLTRLFDILSSQ 129 (447)
T ss_pred HHHHHHHHhhcc
Confidence 444555555554
No 302
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=66.51 E-value=55 Score=24.88 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVF-SASATSLVLLVM 247 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~-~~~a~~~f~~~~ 247 (251)
++++...+.+.+.||.++..++..|.++..-+.-.+-|. +..+++ +..-+..|+.-+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~-~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQ-MVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHH
Confidence 456667777777777777777777777766666554333 333333 445566666543
No 303
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.36 E-value=1.6e+02 Score=31.52 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 124 QVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.....+..+..++......++.|...++.|
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~~~~a 777 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKATQRSA 777 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 344445555566666677777787777755
No 304
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=66.25 E-value=82 Score=26.77 Aligned_cols=51 Identities=6% Similarity=0.148 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+|++=-..+.+.+.++......+.......+.++.+.+.++.+.-..|+.
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~ 101 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYS 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433
No 305
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.21 E-value=71 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
.+|++--....+.+.++......+.......+.++.+.+.++.+.-.
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433333
No 306
>PRK00846 hypothetical protein; Provisional
Probab=66.08 E-value=54 Score=24.63 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.++.++.|-..+..+...++.|+..++.|..++.++.
T Consensus 25 Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 25 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666666666666666666666666666554
No 307
>PRK12704 phosphodiesterase; Provisional
Probab=65.78 E-value=1.5e+02 Score=29.71 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=4.6
Q ss_pred CCCCchhHHHH
Q 025526 232 FPVFSASATSL 242 (251)
Q Consensus 232 ~~~~~~~a~~~ 242 (251)
+++....+-..
T Consensus 148 a~lt~~ea~~~ 158 (520)
T PRK12704 148 SGLTAEEAKEI 158 (520)
T ss_pred hCCCHHHHHHH
Confidence 44444444333
No 308
>PF14282 FlxA: FlxA-like protein
Probab=65.60 E-value=63 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 195 SNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.....|...|..+..++..+.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 309
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=65.57 E-value=93 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 122 TAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
++++-.....+|.+++.++...++..+
T Consensus 74 iarvA~lvinlE~kvD~lee~fdd~~d 100 (189)
T TIGR02132 74 IANVASLVINLEEKVDLIEEFFDDKFD 100 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 310
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.54 E-value=74 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 119 RQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
+...........+++.++++++.++..+
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443333
No 311
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.13 E-value=96 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.314 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLA 127 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~ED---P~~mLdQ~Ireme~~L~kar~~lA~v~A 127 (251)
+|.+|..++...-+.+-+.+++ -..-.+..+.+.++.|.++|.....++.
T Consensus 74 ~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 74 ILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554443333333332 2344444555555555555555444443
No 312
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.91 E-value=1.2e+02 Score=28.27 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (251)
|.-++..|.+-++.+.....+.-.++++...+....+.+++. ++-|.-++-.+ +.++.-++.++....
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~--------rqKlshdlq~K----e~qv~~lEgQl~s~K 108 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT--------RQKLSHDLQVK----ESQVNFLEGQLNSCK 108 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH--------HHHhhHHHhhh----HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
.+++.|...+..++..++....
T Consensus 109 kqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 313
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=64.45 E-value=89 Score=26.55 Aligned_cols=23 Identities=4% Similarity=-0.168 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 025526 209 SKKDTLKARAQSAKFVFPLSLLE 231 (251)
Q Consensus 209 ~k~~~LkAr~~~AkAq~~vn~~l 231 (251)
.+...-.+......|.+-+.+.+
T Consensus 138 ~~l~~ei~~lav~~A~kil~~~l 160 (184)
T CHL00019 138 NQVRQQVFQLALQRALGTLNSCL 160 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHc
Confidence 33333333444444444444444
No 314
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=64.38 E-value=86 Score=26.36 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.+|+.=-..+.+++.+++....++.......+.++.+.+.++.+.-..|...
T Consensus 43 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~e 94 (173)
T PRK13460 43 KALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSD 94 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344444444444444444444444444444444444444444433
No 315
>PLN02939 transferase, transferring glycosyl groups
Probab=64.34 E-value=1.8e+02 Score=31.72 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~-le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
..|+-.++|++..+..+...+.++...+.. +=.+.+.++...+...+++..| --.|.+-+++.+++..|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 267 SLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKA---------ALVLDQNQDLRDKVDKLE 337 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhccchHHHHHHHHHH
Confidence 677888888888888777777766554332 2334444444444444444443 344555555566666666
Q ss_pred HHHHH
Q 025526 181 AQLDQ 185 (251)
Q Consensus 181 ~ql~~ 185 (251)
..+++
T Consensus 338 ~~~~~ 342 (977)
T PLN02939 338 ASLKE 342 (977)
T ss_pred HHHHH
Confidence 65544
No 316
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=64.32 E-value=2.2 Score=45.12 Aligned_cols=140 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~E---DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.+..|=...+.+-+..+-...+ -.-+.+++-+.|+.+.+......-......+++++.++..+...+++-..-+..+
T Consensus 605 ~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~ 684 (859)
T PF01576_consen 605 AVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAA 684 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454444433333 2347788888888888888877777777888888888888877777777666666
Q ss_pred HhcCCH----------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 154 LQKGEE----------DL------AREALKRRKSYADNANALKAQLDQQKNVVNN-LVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 154 L~~G~E----------dL------AreAL~rk~~~e~~~~~l~~ql~~~~~~v~~-Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
..+.+- +| ...+-..+..++.++..|+..++.++..... -+..+..|+.+|.++..+++.=.-
T Consensus 685 ~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r 764 (859)
T PF01576_consen 685 EEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQR 764 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHH
Confidence 555441 11 1122244556666667777766666654433 356666777777777766665443
No 317
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.11 E-value=1.7e+02 Score=29.60 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.|+.|+..+.+++..|.+++..-+..|+.+|
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443
No 318
>PRK10807 paraquat-inducible protein B; Provisional
Probab=64.07 E-value=92 Score=31.46 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=29.8
Q ss_pred CcccccCchHHHHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 70 GALNTRMNLFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATA 123 (251)
Q Consensus 70 ~~~~~~M~if~Rl~~lira~in~~lDk~ED-P~~mLdQ~Ireme~~L~kar~~lA 123 (251)
-.+-+..|-|..+. ..+++++++++. | |++.+.+++..+..++..+.
T Consensus 406 pvIPt~ps~l~~l~----~~~~~il~kin~lp---le~i~~~l~~tL~~~~~tl~ 453 (547)
T PRK10807 406 PIIPTVSGGLAQIQ----QKLMEALDKINNLP---LNPMIEQATSTLSESQRTMR 453 (547)
T ss_pred ceeecCCCCHHHHH----HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 34556677777775 577888888775 4 55555566666666555443
No 319
>PLN02769 Probable galacturonosyltransferase
Probab=64.05 E-value=56 Score=33.69 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
.|.-+.|-|-.++.|+++|.-||.=++. +|..+.-+.-..++...+.+.+.-.-. ...|.||=..+..+....+..+
T Consensus 172 ~e~~~~~~d~~~~~l~Dql~~Ak~y~~~-iak~~~~~~l~~el~~~i~e~~~~l~~--~~~d~dlp~~~~~~~~~m~~~~ 248 (629)
T PLN02769 172 EEHKEVMKDSIVKRLKDQLFVARAYYPS-IAKLPGQEKLTRELKQNIQEHERVLSE--SITDADLPPFIQKKLEKMEQTI 248 (629)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHh-hcccCCcHHHHHHHHHHHHHHHHHHhh--ccccccCChhHHHHHHHHHHHH
Confidence 3455677788999999999999975422 222222233344455555555544443 3458888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
...+.........+.+|+.-+..+|++..-.+.+-..|
T Consensus 249 ~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l 286 (629)
T PLN02769 249 ARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFL 286 (629)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999988888877554444333
No 320
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.01 E-value=1.2e+02 Score=31.45 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=67.6
Q ss_pred HHHhhcccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHH
Q 025526 90 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQ-ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE--EDLAREAL 166 (251)
Q Consensus 90 in~~lDk~EDP~~mLdQ~Ireme~~L~kar~-~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~--EdLAreAL 166 (251)
++.+.|.+-.|+.-.++.+.++++...+.=. -+..+-..+.++.+.+..+++++..+-...-....-|. +.-=.-..
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLk 102 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLK 102 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHH
Confidence 5666777777776666677777776665543 35556667778888999999998888777666555554 00000233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (251)
.....+...++.|..++++-..++-.+..+++.+
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555544
No 321
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=63.89 E-value=1.1e+02 Score=27.49 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHHHHH-----------hhcccCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANA-----------ILSSFEDPEKILE------------QAVLEMNDDLVKMRQATAQVLASQKRL 132 (251)
Q Consensus 76 M~if~Rl~~lira~in~-----------~lDk~EDP~~mLd------------Q~Ireme~~L~kar~~lA~v~A~~k~l 132 (251)
.|-|..-|+.+...+.. +.+.+.+|.+-+. ....++++.+.++.+.+..........
T Consensus 59 ~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~ka 138 (258)
T cd07655 59 YGTLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKA 138 (258)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666777777666655 4555555643321 124556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 133 ENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 133 e~k~~~~~~~~~~~e~rA~ 151 (251)
...|...=.+++....+..
T Consensus 139 Kk~Y~~~cke~e~a~~~~~ 157 (258)
T cd07655 139 KKAYHAACKAEKSAQKQEN 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666555555444444433
No 322
>PRK15396 murein lipoprotein; Provisional
Probab=63.83 E-value=53 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q 025526 216 ARAQSAKFVFPLSLL 230 (251)
Q Consensus 216 Ar~~~AkAq~~vn~~ 230 (251)
|..+.++|-+++.-.
T Consensus 58 a~~eA~raN~RlDn~ 72 (78)
T PRK15396 58 AKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 323
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=63.61 E-value=1.1e+02 Score=27.49 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQAT 122 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~l 122 (251)
.++...+.++.+.+++...
T Consensus 55 A~~~~~e~e~~l~~a~~ea 73 (250)
T PRK14474 55 AGQEAERYRQKQQSLEQQR 73 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 324
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.22 E-value=69 Score=27.43 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
....++.++..+...++.|...+..|+.++..++....+|..-.+.|+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555556666666666666666666665555544
No 325
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=63.18 E-value=1.1e+02 Score=27.24 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQK-----RLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k-----~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.-.+....+.+..+.+++......+...+ ..+.-+++++.+++....+|+..+...
T Consensus 53 ~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E 113 (246)
T TIGR03321 53 REAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544444443221 122334444444444444444444443
No 326
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.15 E-value=37 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.++++++++...++.++++......|+.+++.++...+-.++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4667788888888888888888888888888777655555555554
No 327
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.85 E-value=1.4e+02 Score=28.18 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=30.5
Q ss_pred HHHHHHHHhh---cccCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 85 VVKSYANAIL---SSFEDPEKILEQAVLEMNDDLVKMRQATA-------QVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 85 lira~in~~l---Dk~EDP~~mLdQ~Ireme~~L~kar~~lA-------~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
.++.-++.+- +.+|+++.+| |.|.-.++..+...++ +-.-+-.+.+.++..+..++.+++.+.+
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444 2455555433 5555555555555444 3333444444444444444444444443
No 328
>PRK12705 hypothetical protein; Provisional
Probab=62.68 E-value=1.8e+02 Score=29.35 Aligned_cols=20 Identities=0% Similarity=0.054 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 130 KRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 130 k~le~k~~~~~~~~~~~e~r 149 (251)
...++++++.+.+++..+++
T Consensus 66 ~~~e~e~~~~~~~~~~~e~r 85 (508)
T PRK12705 66 NQQRQEARREREELQREEER 85 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444444
No 329
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.43 E-value=35 Score=32.63 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
.+..++++.+..++..++..++.+..+...+..+++++.+
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444444444444444444444433
No 330
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=62.22 E-value=1.6e+02 Score=30.40 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNV 189 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~ 189 (251)
+.++..++.++.+...+
T Consensus 384 ~~~l~~le~~l~~~~~~ 400 (656)
T PRK06975 384 DSQFAQLDGKLADAQSA 400 (656)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 331
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=62.03 E-value=1.1e+02 Score=26.87 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHhhCCCCchhHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS---KKDTLKARAQSAKFVF-PLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~---k~~~LkAr~~~AkAq~-~vn~~l~~~~~~~a~~~f~~~ 246 (251)
...++.++++..+.+..+.+.++.|+.+-.+++. .++-+.. . .+++. ++-.+..++..+.+..+.+.+
T Consensus 72 ~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~re~~l~-~--~qae~~klv~iY~~Mkp~~aA~~le~l 143 (192)
T COG3334 72 LYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILR-S--KQAEDGKLVKIYSKMKPDAAAAILENL 143 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHhhhhHHHHHHHcCChhhHHHHHHcC
Confidence 3555555555555555555555555554333322 1111111 1 33333 377788888888888887764
No 332
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.96 E-value=1.1e+02 Score=26.88 Aligned_cols=114 Identities=15% Similarity=0.229 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE---ALKRRKSYADNAN 177 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAre---AL~rk~~~e~~~~ 177 (251)
.+.++-.+.|++..+......-..+.+..++++++...+...+..++..=.. +..+.+-+.+. .-..+..+..++-
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k-l~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK-LLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 3666777777777777777778888888888888888888888888776655 34444433321 1223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.++.-+-+-...+..-...+..+..-|++++.=...|+
T Consensus 141 ~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR 178 (193)
T PF14662_consen 141 EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELR 178 (193)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44444333333333434444444444444444444443
No 333
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.69 E-value=2e+02 Score=29.63 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred cccccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 71 ALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 71 ~~~~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
++|..-+.-+++..---.+=..++....--+.-+-+-|-+++.+|.+.|+.++.+..+..+++....+....-...+.+=
T Consensus 72 al~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR 151 (772)
T KOG0999|consen 72 ALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQR 151 (772)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q ss_pred HHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 151 QLALQKGEEDLAREA--LKRRKSYADNANALKAQLDQQKN---VVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 151 ~~AL~~G~EdLAreA--L~rk~~~e~~~~~l~~ql~~~~~---~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq 224 (251)
..--..=.|--=|++ |.+.-++++.--.|++++..+.. ..+.|+..++.|+..+.=+..+.+...-=...|.-|
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQ 230 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQ 230 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 334
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=61.64 E-value=92 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVL 126 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~ 126 (251)
.-.+....+.++.+.+++......+
T Consensus 70 ~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 70 AKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555444443333
No 335
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=61.50 E-value=99 Score=26.08 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
.+||+=-..+.++|.++.+.-..+.......+.++.+.+.+.++.-..|.
T Consensus 31 ~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 31 NSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESN 80 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555544433333
No 336
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.21 E-value=1.3e+02 Score=27.39 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHhhccc--------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSF--------E--DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~--------E--DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
+-+||+.-+++.+..+ +++ | ||+.+= .+++..|..+.-..-+-+-+...++..+.++....++..
T Consensus 74 LA~kf~eeLrg~VGhi-ERmK~PiGHDvEhiD~elvr----kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~ 148 (290)
T COG4026 74 LAEKFFEELRGMVGHI-ERMKIPIGHDVEHIDVELVR----KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148 (290)
T ss_pred HHHHHHHHHHHhhhhh-heeccCCCCCccccCHHHHH----HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 5677777777766543 222 2 444322 256666666655544444455556666666655554432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 148 RKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 148 ~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.+++ .+.+..+++..++..+..+...+..-..|...++.+..++..++.+.+.|-
T Consensus 149 --------~Ekee----L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 149 --------KEKEE----LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred --------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 22232 233334445555555555555555555555555555555555555555543
No 337
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.11 E-value=79 Score=24.79 Aligned_cols=105 Identities=21% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKN 188 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~ 188 (251)
.+++..|..-+..+...+..-..-+..+...+..+.+--.+-..-+..++ .-...|+.+...-..........+..+..
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~-~k~~rA~k~a~~e~k~~~~k~~ei~~l~~ 88 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE-AKRERAEKRAEEEKKKKEEKEAEIKKLKA 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333334343333 33344556655666666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.+..|+..+..++.++.+++--.+-|
T Consensus 89 ~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 89 ELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766555544
No 338
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.03 E-value=48 Score=22.26 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
++..++.+....+.|+.+...|...-+.++.+...|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666665555543
No 339
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=60.94 E-value=1.8e+02 Score=29.01 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
...+.++...|.+++..+..+......|+.++......+....++-.
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555554443
No 340
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=60.86 E-value=1e+02 Score=26.00 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=46.1
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 162 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA 162 (251)
.|. .+|++==..+.+++.++......+.......+.++.+.+.++...-..|+.....-.+++-
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~ 105 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQII 105 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 563 7777777777778888888877777777788888888888887777777766544444333
No 341
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.78 E-value=1.2e+02 Score=26.96 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+|++==..+.+.+.++......+.......+.++.+++.++.+.-..|+.
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~ 82 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKE 82 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554455555555555555555555555555555555554444444443
No 342
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.73 E-value=1.2e+02 Score=28.76 Aligned_cols=17 Identities=6% Similarity=0.282 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWY 147 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e 147 (251)
.++.+.+++++....+-
T Consensus 8 eL~~efq~Lqethr~Y~ 24 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYK 24 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334433333333
No 343
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.72 E-value=1.3e+02 Score=27.35 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=22.6
Q ss_pred CcccccCCCcccccCch-----------HHHHHHHHHHHHHHhhcccCCHH-HHHHHHHHHH
Q 025526 62 SHCYRQGGGALNTRMNL-----------FDRLARVVKSYANAILSSFEDPE-KILEQAVLEM 111 (251)
Q Consensus 62 ~~~~~~~~~~~~~~M~i-----------f~Rl~~lira~in~~lDk~EDP~-~mLdQ~Irem 111 (251)
++|--.+|.-+|.. +. ++||.......-..+-..+-||- .+++--|.++
T Consensus 63 ~q~M~~~g~elg~~-s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I 123 (248)
T cd07619 63 AQCMVEGAAVLGDD-SLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNI 123 (248)
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555542 33 34444444444444444455553 3444333333
No 344
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=60.69 E-value=1.2e+02 Score=26.58 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
..+......+...+...+..++..+.........+.+=..-+...+.+.+.|.
T Consensus 105 ~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~ 157 (188)
T PF05335_consen 105 QQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQ 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433333444444444444
No 345
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.65 E-value=2.8 Score=43.25 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~ 141 (251)
..++..+++++..+.........+....+.+..+..+++.
T Consensus 89 ~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~ 128 (722)
T PF05557_consen 89 LELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEE 128 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444444444444333333
No 346
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.50 E-value=1.9e+02 Score=29.11 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=50.7
Q ss_pred HHHHHHhhcccCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 025526 87 KSYANAILSSFEDP------------EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---------- 144 (251)
Q Consensus 87 ra~in~~lDk~EDP------------~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~---------- 144 (251)
-..+...+..+|+- ..-+++.|.++++++......+...+.....-...+.++...-.
T Consensus 77 ~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~ 156 (560)
T PF06160_consen 77 LPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS 156 (560)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566665555532 25566666666666666666666666655555444444443333
Q ss_pred ------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 025526 145 ------------------DWYRKAQLALQKGEEDLAREALKRRKSYA 173 (251)
Q Consensus 145 ------------------~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (251)
..-..-......||-.-|++.|......-
T Consensus 157 ~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~ 203 (560)
T PF06160_consen 157 FSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEET 203 (560)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 23333445667888888888877655433
No 347
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.32 E-value=1e+02 Score=25.92 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.++.+..++..+....+....+...+.+.+..+++.+
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333333333333
No 348
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.31 E-value=1.1e+02 Score=26.37 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-hcCC----HHHHHHHHHHHHHHHHHHHH---
Q 025526 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA-------L-QKGE----EDLAREALKRRKSYADNANA--- 178 (251)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A-------L-~~G~----EdLAreAL~rk~~~e~~~~~--- 178 (251)
.+.+..+..|.+++ .|+.++.++...+.+++.+...- . ...+ .|| .+++.+..+-....+.
T Consensus 6 a~qe~Qq~qa~Lv~---~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dL-e~~l~rLeEEqqR~~~L~q 81 (182)
T PF15035_consen 6 AYQEEQQRQAQLVQ---RLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDL-EEALIRLEEEQQRSEELAQ 81 (182)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccH-HHHHHHHHHHHHhHHHHHH
Confidence 34455555555554 67777888888888888877221 0 0011 111 2355555555555555
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 ----LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 179 ----l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
|..|+++....-+.|...+.++......++.++.
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776555444
No 349
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=60.22 E-value=1e+02 Score=25.88 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=32.3
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.|. .+|+.=-..+.+++.++.....++.......+.++.+.+.++.+.-..|+.
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~ 95 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKE 95 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 453 666666666666666666666666555555666666666555555555544
No 350
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.17 E-value=64 Score=23.48 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.++..++++-....+|+..-..|..+......++..|+.+...|+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555544443
No 351
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.12 E-value=1.3e+02 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
..+-++..-+++-.+++.|+++..+.--....+.+
T Consensus 56 ~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Q 90 (221)
T KOG1656|consen 56 GTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQ 90 (221)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445556667778888888888887777766665
No 352
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.95 E-value=63 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+.++.+...+..++..+..++.++......+.++..+..+.+.+...
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666665555543
No 353
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.56 E-value=1.3e+02 Score=26.72 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
+.+|.|.++|...++..=-..+..+.+.-+....++...+..+..+...
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~ 60 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDS 60 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5788888888888888777777777776666666666666666655543
No 354
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=1.3e+02 Score=26.75 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 025526 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRK--------AQLALQKGEEDLAREALKRRKSYADNANALKAQ------- 182 (251)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r--------A~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~q------- 182 (251)
...++..+-.....++.++..+..++-+|..+ ++-+|++ -|-.+|..|+-||.+...|..|
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~Kq----rAlrVLkQKK~yE~q~d~L~~QsfNMeQa 92 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQ----RALRVLKQKKMYENQKDSLDQQSFNMEQA 92 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH----HHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHhhC
Q 025526 183 ------LDQQKNVVNNLVSNTRLLESKIQEAR-SKKDTLKAR-AQSAKFVFPLSLLEF 232 (251)
Q Consensus 183 ------l~~~~~~v~~Lk~~l~~Le~ki~e~k-~k~~~LkAr-~~~AkAq~~vn~~l~ 232 (251)
+......|..|+...++|+..+..++ .+++.|.-. ...-.....++++++
T Consensus 93 ~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lg 150 (218)
T KOG1655|consen 93 NFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLG 150 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
No 355
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=59.21 E-value=47 Score=26.08 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
...++++++.++++.++++..-..|+.+|..++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555555555555555555555555555554
No 356
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.79 E-value=2.8e+02 Score=30.47 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQL--DQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql--~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.++.|.-+++++..|.++- ...+.++-+++.++..|+.....-+.|.+.|.
T Consensus 276 LleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 276 LLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444555555554444 33444444444444444444444444444333
No 357
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=58.78 E-value=93 Score=24.89 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+|++=-..+.+++.+++....++.......+.++.+.+.++.+.-..|+.
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~ 82 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEA 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554444555555444444444444443
No 358
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=58.76 E-value=81 Score=25.35 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~~~ 246 (251)
..++.-++--+.-+..|+..+.+++.|+..+++-.+.++.....+.. -..--.++|+.+|.++
T Consensus 4 ~~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~-------d~e~yl~nPlnaF~LI 66 (134)
T PF08336_consen 4 ADMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS-------DPEEYLSNPLNAFSLI 66 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chhhhhhcHHHHHHHH
Confidence 34555566666777788888888888888888888887776654432 1111246788888775
No 359
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=58.74 E-value=1.9e+02 Score=28.52 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSF-EDPEKILEQAVLEMNDDLVKMRQATA 123 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~-EDP~~mLdQ~Ireme~~L~kar~~lA 123 (251)
|=..|-..-...||.+-+++ +|-..-.+..+.+.++.+.+++..+.
T Consensus 220 ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~ 266 (434)
T PRK15178 220 FAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELL 266 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544 25556666666666666666666644
No 360
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.10 E-value=1.1e+02 Score=30.04 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (251)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~ 191 (251)
.+-...+.+..+.+.++...+...+....++.+|.+ -+...+.+...+.+++..++..++..+....
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334445556666666666666666666677777766 5555555555555555555555544444443
No 361
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=58.09 E-value=2e+02 Score=30.69 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 140 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
....++.-++.+...+.|+-|-|++.|.+..+.-+.
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmen 572 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMEN 572 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 344555556666666777777777776654444443
No 362
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=57.99 E-value=2.1e+02 Score=28.71 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVK 117 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~k 117 (251)
.|+|..=|+.+++..+
T Consensus 199 ~m~D~KEreaeea~k~ 214 (489)
T PF05262_consen 199 DMVDIKEREAEEAAKR 214 (489)
T ss_pred hhHHHHHHHhHHHHHH
Confidence 5666655555555543
No 363
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.59 E-value=2.6e+02 Score=29.74 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQV 125 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v 125 (251)
+-+.+.+..+++.+..+.......
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 325 KSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 364
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.31 E-value=1.4e+02 Score=26.66 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 129 ~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
...+++++-.++..-++-+.....|.++||-+-++-...+.......+..+-..-.++....-.|++++.-+.
T Consensus 27 ~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r 99 (227)
T KOG3229|consen 27 GRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLR 99 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH
Confidence 4455566666666666667777788899999888888888777777777777766666666666666665443
No 365
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=57.18 E-value=1.2e+02 Score=25.53 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
++..+-+--..+...+..+..+..+.+.++.++.+....+.++..
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555556666666667777777777777777777766
No 366
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.15 E-value=1.3e+02 Score=26.00 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 98 EDP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
-||+ .-+..||..+++.|..+.+...++.-....+...+.++-.....|-.
T Consensus 12 ~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~ 63 (200)
T cd07624 12 RSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSA 63 (200)
T ss_pred CCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4665 66788899999999999999999999999999988888888888763
No 367
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=57.08 E-value=1.3e+02 Score=25.94 Aligned_cols=66 Identities=9% Similarity=0.085 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK--GEEDLAREALKRRKSYADNANALKAQLDQQ 186 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~--G~EdLAreAL~rk~~~e~~~~~l~~ql~~~ 186 (251)
++-.++..+..+-..+..+....++...+...+... ++.+-...+..+...++..+...+..++..
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666655555 334444555555555555555554444443
No 368
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=56.97 E-value=1.2e+02 Score=25.67 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFE---DPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~E---DP~~mLdQ~Ireme~~L~kar~~lA~v~A~-~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
+|.++.+++...-..+-+.++ .-..-++....+.++.|.+++....++..+ ...+.. +...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a---~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES---EFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 577777777665444444433 334556666666677777776666666555 333333 3334444555566666
Q ss_pred HhcCCHHHHHHHH
Q 025526 154 LQKGEEDLAREAL 166 (251)
Q Consensus 154 L~~G~EdLAreAL 166 (251)
|..|.++.=..+-
T Consensus 108 ~~~~~~~~~~~~~ 120 (155)
T PRK06569 108 INQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554443
No 369
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.95 E-value=1.9e+02 Score=27.78 Aligned_cols=120 Identities=10% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
....|..|..-.......+-.+...-.++...+...-.++..+|+..-.=+ + ..+.+.....+++...+..+
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ql----e----~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQL----E----PLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----H----HHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666777777777777777777777777777654432 2 34555677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhh
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL-----------KARAQSAKFVFPLSLLE 231 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L-----------kAr~~~AkAq~~vn~~l 231 (251)
.+....+..+...|.++..++++.|.+.+.- +-+....+..+.+.++-
T Consensus 290 ~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 290 KQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888888877754 34444445555444443
No 370
>PLN03188 kinesin-12 family protein; Provisional
Probab=56.94 E-value=3.3e+02 Score=30.65 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCC
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA-------SEDWYRKAQLALQKGE 158 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~-------~~~~e~rA~~AL~~G~ 158 (251)
.-.|+++++.-|-..-|+.+-+.-.|+.++.++-.. |++..+.|..|=.+|.
T Consensus 1094 c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~ 1152 (1320)
T PLN03188 1094 CAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGA 1152 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345666666666666666666666666666655443 3344444444444553
No 371
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=56.91 E-value=1.2e+02 Score=25.51 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+-..+...+..+.+++....++...|..-+
T Consensus 62 A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii 91 (174)
T PRK07352 62 AEERLRQAAQALAEAQQKLAQAQQEAERIR 91 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444443333
No 372
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=56.82 E-value=1.9e+02 Score=27.97 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=73.6
Q ss_pred cccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 025526 95 SSFEDP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 173 (251)
Q Consensus 95 Dk~EDP-~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 173 (251)
+-+++| ..-|.+..-.....+.+....++..-..-..++.++.+.+..+..--.+........ ...+-.+.+.++
T Consensus 280 ~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~----~~~l~~~~~~L~ 355 (458)
T COG3206 280 EVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE----LALLEQQEAALE 355 (458)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH----HHHHHHHHHHHH
Confidence 344567 566666667777777777777777777777777777777777766666555443322 222333335566
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQ---QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 174 ~~~~~l~~ql~~---~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
+....++.++.. .+....+|+.++...++-++.+-.+.+++..+.
T Consensus 356 ~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 356 KELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666655543 445555566666666666666666666666655
No 373
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.73 E-value=1.1e+02 Score=24.88 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=42.7
Q ss_pred ccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 025526 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 74 ~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~l---e~k~~~~~~~~~~~e~rA 150 (251)
.-.+++.||..-|+-. |--...+.+.+..+...-..++..+.+.+..-..+ ..++..++.++++++.+=
T Consensus 13 ~~~~~ve~L~s~lr~~--------E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRL--------EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred chHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777777665543 33346677777777777777777777766655333 344445555555555544
Q ss_pred HHHH
Q 025526 151 QLAL 154 (251)
Q Consensus 151 ~~AL 154 (251)
..+|
T Consensus 85 ~t~L 88 (120)
T PF12325_consen 85 QTLL 88 (120)
T ss_pred HHHH
Confidence 4443
No 374
>PRK00106 hypothetical protein; Provisional
Probab=56.72 E-value=2.3e+02 Score=28.75 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=5.3
Q ss_pred hCCCCchhHHHH
Q 025526 231 EFPVFSASATSL 242 (251)
Q Consensus 231 l~~~~~~~a~~~ 242 (251)
.+++....+-..
T Consensus 162 ~a~lt~~eak~~ 173 (535)
T PRK00106 162 VAALSQAEAREI 173 (535)
T ss_pred HhCCCHHHHHHH
Confidence 344444444433
No 375
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=56.71 E-value=1.2e+02 Score=25.52 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQK-----RLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k-----~le~k~~~~~~~~~~~e~r 149 (251)
+|+.+.+++...-+.+-+..++.+ .-.++...+.++.+.+++....+.+.+.+ ..+.-+++.+.+++....+
T Consensus 43 l~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~ 122 (167)
T PRK08475 43 AAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKS 122 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 025526 150 AQLALQKGEEDLAREALKRRKS 171 (251)
Q Consensus 150 A~~AL~~G~EdLAreAL~rk~~ 171 (251)
|...+.......-.++=.+..+
T Consensus 123 a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 123 FEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 376
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=56.49 E-value=2.6e+02 Score=29.37 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 025526 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD-QQKNVVNNLVSNTRLLESKI 204 (251)
Q Consensus 126 ~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~-~~~~~v~~Lk~~l~~Le~ki 204 (251)
-....+++..+....+.+.....+-..| .+|-.+.=..+..-+.++..+-..|...++ .+......+...+.++|.++
T Consensus 520 se~aqqLE~~Lq~~qe~la~l~~QL~~A-r~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rL 598 (739)
T PF07111_consen 520 SEVAQQLEQELQEKQESLAELEEQLEAA-RKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRL 598 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555554444 233222233344444445555555554444 45566667777777888877
Q ss_pred HHHHHH
Q 025526 205 QEARSK 210 (251)
Q Consensus 205 ~e~k~k 210 (251)
++++++
T Consensus 599 NeARRE 604 (739)
T PF07111_consen 599 NEARRE 604 (739)
T ss_pred HHHHHH
Confidence 776654
No 377
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.38 E-value=46 Score=34.16 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=11.7
Q ss_pred CCCccccccc--cccccccc
Q 025526 25 SSSSSLCMVK--KPLTTSFF 42 (251)
Q Consensus 25 ~~~~~~~~~~--~~l~~~f~ 42 (251)
+++|.+|+++ .-++.+||
T Consensus 13 gn~s~~~~lR~S~~~r~~w~ 32 (907)
T KOG2264|consen 13 GNGSFVPSLRVSAFLRFIWF 32 (907)
T ss_pred CCCCcCeeeeehhhHHHHHH
Confidence 4556677777 22777776
No 378
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.01 E-value=3.2e+02 Score=30.27 Aligned_cols=25 Identities=12% Similarity=-0.162 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 221 AKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 221 AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
.++...+.+...-++.+.++.+.+.
T Consensus 299 ~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 299 RQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3344445555555555555555443
No 379
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.89 E-value=1.8e+02 Score=27.35 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (251)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (251)
+.++|.-.|..+..+...-..-|.+|-+-.+-+.+--...+.+++-+.|.|.+.+ -.|..++..|...-.-+....
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi----~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTI----FQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHhhhHHHHHHHHHHHhHHH
Confidence 4678888888888888888888888888888888888888888888888777665 345666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 191 NNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.=+.+-..|+..|+.++.++....
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi 104 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAI 104 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665554443
No 380
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=55.68 E-value=1.4e+02 Score=26.05 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQ 120 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~ 120 (251)
.++.+.+++..+.+++.
T Consensus 98 A~~~l~e~e~~L~~A~~ 114 (205)
T PRK06231 98 AQQLLENAKQRHENALA 114 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 381
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.55 E-value=2.6e+02 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 199 LLESKIQEARSKKDTLKARAQSAKFVF 225 (251)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~AkAq~ 225 (251)
+|+...+-.+.-.+.|..|.+.++.+.
T Consensus 374 ~L~R~~~~~~~lY~~lL~r~~e~~i~~ 400 (726)
T PRK09841 374 RLSRDVEAGRAVYLQLLNRQQELSISK 400 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444445544444443
No 382
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=55.47 E-value=92 Score=29.60 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLA 127 (251)
Q Consensus 111 me~~L~kar~~lA~v~A 127 (251)
.+.++.+++..++.+.+
T Consensus 101 ~~~~l~~a~A~l~~A~a 117 (397)
T PRK15030 101 YQATYDSAKGDLAKAQA 117 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555544444443
No 383
>PF15294 Leu_zip: Leucine zipper
Probab=55.30 E-value=1.8e+02 Score=27.07 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 180 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~ 180 (251)
..+|.-.|+.+.++..+++..+..+-......-.+-..++..+.+++. ..+-.+|..++.-. .....+++.++..++
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~~k~~~~~~-~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQKGKKDLSFK-AQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhcccccccc-ccchhhHHHHHHHHH
Confidence 456777777777777777765544444333333333333333333333 22222233222221 133444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 181 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
.+++. .......+...|+..+...+..
T Consensus 204 ~e~ek---~~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 204 SELEK---ALQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 2333344444455555444443
No 384
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.23 E-value=64 Score=24.03 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.-.++.++.|-..+.++...++++..+++-|-.|+.+++
T Consensus 18 AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 18 AFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777888888888888888888888877777654
No 385
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.82 E-value=1.4e+02 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.++.+....+....+|+..+..|+.++..++.+..++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333
No 386
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=54.60 E-value=94 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 025526 142 ASEDWYRKAQLALQKGEEDLAREALKRRKS 171 (251)
Q Consensus 142 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 171 (251)
.+.+.-.+|+.++..|+.+-|+..+..-..
T Consensus 44 ~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 44 EAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444567888899998877766554333
No 387
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=54.57 E-value=1.5e+02 Score=27.72 Aligned_cols=19 Identities=5% Similarity=0.205 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLAS 128 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~ 128 (251)
+.+.++.+++..+.+..+.
T Consensus 96 ~~~~~~~~~~a~l~~~~~~ 114 (370)
T PRK11578 96 QAENQIKEVEATLMELRAQ 114 (370)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555665555544444443
No 388
>PHA01750 hypothetical protein
Probab=54.23 E-value=46 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
+++++++..+++.++-....++.++.+.+.|.+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 445555555555555555556666666666543
No 389
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.00 E-value=3e+02 Score=29.26 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 025526 87 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (251)
Q Consensus 87 ra~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 166 (251)
+-++...+.+..|-...+.-.|.+++..|..++..+..+-.....++.+++.........+.+...+ +.=+....
T Consensus 605 K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~-----e~E~~~l~ 679 (769)
T PF05911_consen 605 KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL-----EAEAEELQ 679 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCch
Q 025526 167 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ---------EARSKKDTLKARAQSAKFVFPLSLLEFPVFSA 237 (251)
Q Consensus 167 ~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~---------e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~ 237 (251)
.+...++..+..-+...+........|+.++...+..-. ..+...+.-.|-..-|.=|+.|.---..+.+=
T Consensus 680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 680 SKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hHHHHHHH
Q 025526 238 SATSLVLL 245 (251)
Q Consensus 238 ~a~~~f~~ 245 (251)
.++..|.+
T Consensus 760 a~~~d~~~ 767 (769)
T PF05911_consen 760 ATPEDFLL 767 (769)
T ss_pred CChhhhhc
No 390
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=53.87 E-value=31 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
|+..++..++.++.+...+ +++..|+..|..+
T Consensus 10 Lqe~~d~IEqkiedid~qI-------aeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQI-------AELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHH-------HHHHHHHHHHHHh
Confidence 4445555555555555444 4445555555443
No 391
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.76 E-value=98 Score=23.62 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.+......|.+.+++......+|+.--.++..++...-
T Consensus 42 ~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 42 QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666666655555555554433
No 392
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=53.70 E-value=1.3e+02 Score=25.10 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=45.7
Q ss_pred chHHHHHH---HHHHHHHHhhcccC----CHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLAR---VVKSYANAILSSFE----DPE----KILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 77 ~if~Rl~~---lira~in~~lDk~E----DP~----~mLdQ~Ireme~~L-~kar~~lA~v~A~~k~le~k~~~~~~~~~ 144 (251)
.|++||.| +|.|-|+-.++.+| |-+ .-+...+.++.+.+ .+.......-+ ..+..++..+...+.
T Consensus 7 ~I~sRLfDHrpvIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L---~~l~~~l~~a~~~~~ 83 (145)
T PF14942_consen 7 EIHSRLFDHRPVIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNL---EQLLERLQAANSMCS 83 (145)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 47888865 89999999999998 443 23333444444333 34333333222 335566666666666
Q ss_pred HHHHHHHHHHh
Q 025526 145 DWYRKAQLALQ 155 (251)
Q Consensus 145 ~~e~rA~~AL~ 155 (251)
.+..+....-.
T Consensus 84 ~l~~~e~~~~~ 94 (145)
T PF14942_consen 84 RLQQKEQEKQK 94 (145)
T ss_pred HHHHHHHHHhh
Confidence 66666665544
No 393
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=53.59 E-value=2.5e+02 Score=28.20 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=5.1
Q ss_pred hCCCCchhHHHH
Q 025526 231 EFPVFSASATSL 242 (251)
Q Consensus 231 l~~~~~~~a~~~ 242 (251)
.+++....+-+.
T Consensus 141 ~a~lt~~eak~~ 152 (514)
T TIGR03319 141 ISGLTQEEAKEI 152 (514)
T ss_pred HhCCCHHHHHHH
Confidence 344444444433
No 394
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.45 E-value=88 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
++..|...-+.+....-.+...+..|..++.+..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 395
>PF13514 AAA_27: AAA domain
Probab=53.44 E-value=3.4e+02 Score=29.70 Aligned_cols=133 Identities=19% Similarity=0.294 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcccCC--HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 025526 84 RVVKSYANAILSSFED--PEKILEQAVLEMNDDLVKMRQ---ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG- 157 (251)
Q Consensus 84 ~lira~in~~lDk~ED--P~~mLdQ~Ireme~~L~kar~---~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G- 157 (251)
..+...++.+++.+.- |..-.+..+..+...+.+++. ...........++.++..+...+..++.+...-+...
T Consensus 760 ~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~ 839 (1111)
T PF13514_consen 760 AAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAG 839 (1111)
T ss_pred HHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555555432 111122444444444444443 3334444455555556666666555555544333221
Q ss_pred --C-HHHHH--HHHHHHHHHHHHHHHHHHHHHH---------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 --E-EDLAR--EALKRRKSYADNANALKAQLDQ---------QKN-----VVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 158 --~-EdLAr--eAL~rk~~~e~~~~~l~~ql~~---------~~~-----~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
+ +++.. .-..++..+...+..++.++.. ... ..+.+...+..++.++.++..+.+.+..
T Consensus 840 ~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~ 917 (1111)
T PF13514_consen 840 VEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQE 917 (1111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33322 1223344445555555555521 111 1233444555555555555555555443
No 396
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.42 E-value=1.4e+02 Score=25.35 Aligned_cols=110 Identities=12% Similarity=0.199 Sum_probs=50.3
Q ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 025526 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---LQKGEEDLAREALK 167 (251)
Q Consensus 91 n~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A---L~~G~EdLAreAL~ 167 (251)
+..++.+|+...-+=......++++...++.+..+.. ++.+...++++++.+-+.| |..-.-+.-+--=.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~-------~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~ 77 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKE-------EVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEE 77 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHH
Confidence 3445555555444444444555555555555555444 3344444444444333332 22212222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.....-+.+..++-.+.-..+....|+..-..|+.++..+
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555444443
No 397
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.93 E-value=83 Score=26.10 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.|..++.+|...+..++.+++.|+.+...+.
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666677766666554
No 398
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.91 E-value=58 Score=26.05 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW-----YRKAQLALQKGEEDLAR 163 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~-----e~rA~~AL~~G~EdLAr 163 (251)
|-..-|++.|.++-+++...+..+..++.+-..|+.+-+.++..+.+. ......-...|.+.||+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~ 77 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLAR 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHH
No 399
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=52.75 E-value=1.4e+02 Score=25.22 Aligned_cols=74 Identities=12% Similarity=-0.000 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.||+-+++ +-|.++.+.++.. ...++.=..+.+..+..+......|++.++-+-|...+.+..-+..-..
T Consensus 87 ~d~~fLme--~me~rE~le~~~~--------~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y~~kl~~ 156 (166)
T PRK01356 87 LSPLELSI--FWDEMERIENTIL--------FSDLEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIKTSKLKYIGTLLN 156 (166)
T ss_pred CCHHHHHH--HHHHHHHHHcCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 36665555 3344455554421 1123444455666667777788888999999999988888777666555
Q ss_pred HHHH
Q 025526 178 ALKA 181 (251)
Q Consensus 178 ~l~~ 181 (251)
.++.
T Consensus 157 ~i~~ 160 (166)
T PRK01356 157 KLQE 160 (166)
T ss_pred HHHH
Confidence 4443
No 400
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.61 E-value=3.3e+02 Score=29.42 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
..++..+..+++-.+..+.....|.....+++.+|.++|.+
T Consensus 361 d~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 361 DMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444443
No 401
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=52.46 E-value=86 Score=22.58 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 79 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 79 f~Rl~~lira~in~~lDk~EDP----~~mLdQ~Ireme~~L~kar~~lA~v~-A~~k~le~k~~~~~~~~~~~e~r 149 (251)
|.-+..-|...++.+-....+. ..-++..|.++++-|.++.-.+-.+= ..+..+..++..+....+++.+.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554322211 24455555555555555554443332 45555666666666666665554
No 402
>PLN02678 seryl-tRNA synthetase
Probab=52.37 E-value=2.5e+02 Score=27.81 Aligned_cols=22 Identities=0% Similarity=0.009 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 129 QKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 129 ~k~le~k~~~~~~~~~~~e~rA 150 (251)
++.+..+++.++.+.+...+..
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 403
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.36 E-value=96 Score=24.59 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
.+......++..+.......++++..+.+.+.++..++.+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666666555443
No 404
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=52.27 E-value=2.2e+02 Score=27.19 Aligned_cols=135 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 025526 80 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 80 ~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
.|+..........-...+..-...++..+...+.++..+...+.+.....++....++.......+++..- +..+.-
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~ 189 (421)
T TIGR03794 113 EEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWREEQ---EKYDAA 189 (421)
T ss_pred HHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhc---ccHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 160 DLAREAL-KRRKSYADNANALKAQLDQQKNVVNNL-VSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 160 dLAreAL-~rk~~~e~~~~~l~~ql~~~~~~v~~L-k~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+.++... ...+.....+.....++.........+ ...+..++.++.+.+.+...+...
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 249 (421)
T TIGR03794 190 DKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENK 249 (421)
T ss_pred HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=52.13 E-value=1e+02 Score=23.74 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
++.|+.. ++..++.++.+...+...+..|+.++...+.++..|..
T Consensus 40 KksYe~r---wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 40 KKSYEAR---WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=52.10 E-value=2.4e+02 Score=27.66 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------HH-----------HH
Q 025526 126 LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK--------------------SY-----------AD 174 (251)
Q Consensus 126 ~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~--------------------~~-----------e~ 174 (251)
+-.-..++.++-++.+++.+..+-.+. |--.|||+|.-.|.+|. .. ++
T Consensus 219 L~~lr~~k~~Lt~l~~rvqkvRDeLe~-LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d 297 (414)
T KOG2662|consen 219 LERLRILKKRLTELTSRVQKVRDELEE-LLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED 297 (414)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence 334445555666666666666666655 44578999999999992 33 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.+++++--++..=.+++.+.+++..|..-|.+.+.-.+
T Consensus 298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIIN 335 (414)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 78888888888888888888888888877777776655
No 407
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.97 E-value=2.7e+02 Score=28.11 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ-------QKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~-------~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
..++.+..+..-.+...++.....+...++. .......+...+..++.+..++......|.
T Consensus 339 ~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 339 NHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666544 333344444444444444444444444333
No 408
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=51.93 E-value=1.9e+02 Score=26.35 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK-------GEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~-------G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (251)
.++........++.++++++..+++....+..=..- |.-.-++..-.....++.+++.++.+++.....+
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555556666666666666666665544433222 3334555555555555555555555544443333
No 409
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.41 E-value=2.6e+02 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
...+-++..++++.+..|..+-.....|.-..+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555444444444444443333
No 410
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.26 E-value=1.9e+02 Score=26.32 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (251)
||.+.+.+.+.-+-..+.++..+-.++.+++.+.+..+.+ .++++.....|+..+......
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er-------------------lk~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER-------------------LKRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhchhH
Confidence 7777777777777777777777777777666665554433 334455555566666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQ 205 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~ 205 (251)
+..|+..+.+|+.+++
T Consensus 193 v~~L~~r~~ELe~~~E 208 (290)
T COG4026 193 VYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHhccccc
Confidence 6666666666665543
No 411
>PF15556 Zwint: ZW10 interactor
Probab=51.25 E-value=1.8e+02 Score=26.05 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
|+.|.+.++.++..+..+-.++++.......|+.-++.++.|+....-+.+.|+-+=++..
T Consensus 72 KAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQ 132 (252)
T PF15556_consen 72 KATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQ 132 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=51.22 E-value=99 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 181 AQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 181 ~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
.+.|.+...+.+++..+..||.++.+++.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666666666666653
No 413
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=50.88 E-value=1.5e+02 Score=24.84 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKR----------------LENKCKA 138 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~----------------le~k~~~ 138 (251)
+|+++..++...-..+-+.+.+.+ ...++...+.++.+.+++.....++.+.+. +++....
T Consensus 27 ~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~ 106 (161)
T COG0711 27 VWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA 106 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (251)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (251)
...+++.=.++|...|..-=.+||.........-.-.......-++..-..+
T Consensus 107 a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~~~~~~~~~~lid~~~~~l 158 (161)
T COG0711 107 AEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAEL 158 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
No 414
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=50.83 E-value=1.1e+02 Score=23.20 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
+|+-+.--..+..+..++..|+..++.+-..++..+....+|+..=+-+..-+..|++...
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555556666777777777777777777777777777777776667777777755433
No 415
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=50.53 E-value=3.3e+02 Score=28.76 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=86.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 025526 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 174 (251)
Q Consensus 96 k~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~-~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 174 (251)
.+++....++..++|+..=+......+-.++.. -..++.++...-..+ ....-.-++..-+.-+-.+|....+...
T Consensus 170 ~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~---~~~lg~~i~~~l~~~~~~~L~~i~~l~~ 246 (806)
T PF05478_consen 170 GVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNI---GSLLGGDIQDQLGSNVYPALDSILDLAQ 246 (806)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344456788888888888888888888777776 555554443333333 3333334444445667777788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.+.+.+..+.+....+.+|+....+|+..+.+.|+........
T Consensus 247 ~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 247 AMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999888887766
No 416
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.19 E-value=4.8e+02 Score=30.55 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY---RKAQLA 153 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e---~rA~~A 153 (251)
.+|..|.+++ ..++.+-+...+-..-.+|...+++..+....+.+-......+.++..+..+........ ......
T Consensus 24 d~~~~l~~k~-~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~ 102 (1822)
T KOG4674|consen 24 DVFKKLPKKS-KDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWE 102 (1822)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4566666544 566777777777888999999999999999999999999999999999998888877332 233333
Q ss_pred HhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 154 LQKG---EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 154 L~~G---~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
+..| ++.| ...+.+..++-..+...+..+...++.+...+..+..++.......-.+.+|..-
T Consensus 103 ~~~~~~~~~~l----~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e 168 (1822)
T KOG4674|consen 103 IDALKLENSQL----RRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQE 168 (1822)
T ss_pred HHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3322 2233444455555555666666666666666666666666665555555555443
No 417
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=49.80 E-value=5.4 Score=42.24 Aligned_cols=139 Identities=17% Similarity=0.316 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 75 RMNLFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 75 ~M~if~Rl~~lira~in~~lDk~EDP---~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
..+-+.|....+.+.+.++=+.+++- -..|...++.++.++..++..+-.-......+++++..+..++..|..+..
T Consensus 230 ~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 230 QLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556677777777777766666654 266777888888888888888888888888899999999999999998887
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 152 LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 152 ~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.-....-++| =.-+..+...+..++.+++.....+..|+.....|...+.++....+...+.
T Consensus 310 ~e~~~~~Eel----EeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 310 EEAEQRTEEL----EEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554433321 1233444555666666666666666666666666666666666555544443
No 418
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.80 E-value=1.6e+02 Score=24.93 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
..+|++==..+.+++.++.....++.......+.++.+.+.++.+.-..|+.
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~ 104 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKD 104 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667766666666666666665555555555555555555555555444433
No 419
>PRK07737 fliD flagellar capping protein; Validated
Probab=49.74 E-value=1.5e+02 Score=29.57 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA~~ 152 (251)
-+..+++.+..+++.|+.+...
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~~ 466 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLKQ 466 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 420
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=49.73 E-value=2.8e+02 Score=27.73 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHH---------HHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED---WYRKAQLALQKGEEDLAREALKRRKSY---------ADNAN 177 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~---~e~rA~~AL~~G~EdLAreAL~rk~~~---------e~~~~ 177 (251)
..++++...+.......+....++.+++..+...++ +-..++..|...=+.||-+++.++..- +.-+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~ 143 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLS 143 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444443333222221 233444556666678999998886542 33334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk 194 (251)
-++.+++.++..|+++.
T Consensus 144 Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 144 PLREQLDGFRRQVQDSF 160 (475)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 421
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.69 E-value=3.9e+02 Score=29.35 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~ 121 (251)
.-|++.+..++.++...+.-
T Consensus 205 ~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 205 NRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888777654
No 422
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.67 E-value=1.3e+02 Score=23.83 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 219 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~ 219 (251)
|.++-+.+..+++++...-..+..|+..+..+-..=..++-+-+-|+-+..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777666666666666555555543
No 423
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=49.67 E-value=4e+02 Score=29.43 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
+=|.-.+++|++.|.+..+.++..--..|.+.-+.+.+.....-...
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777788888888888888888888888887777777766655543
No 424
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.61 E-value=1.2e+02 Score=23.56 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA--SEDWYRKA-QLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~--~~~~e~rA-~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
.+..+++++..+......+.......+.=++++... -...+.-. ..-+....++.-...-.++..++..+..++.+.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555555555555442 22223322 334555555555555444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTR 198 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~ 198 (251)
+..+..+.++..+++
T Consensus 91 ~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 91 ERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 425
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=49.34 E-value=2e+02 Score=25.91 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 151 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~ 151 (251)
.+|+.==..+.+.+.++.....++.......+.++.+.+.+..+.-..|+
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555554444444444444444444444444444333
No 426
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=49.18 E-value=1.6e+02 Score=24.66 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
..||+-+++|+ |.++.+.++...- ....++.-..+....+.++......|+..++-+-|...+.+..-+..-.
T Consensus 74 ~~d~~fLme~M--e~rE~lee~~~~~-----d~~~L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~ 146 (157)
T TIGR00714 74 VRDTAFLMEQL--ELREELDEIEQAK-----DEARLESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLR 146 (157)
T ss_pred CCCHHHHHHHH--HHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 45777555554 3333333332110 1123344445566666666777777888999999999888877665544
Q ss_pred HHHH
Q 025526 177 NALK 180 (251)
Q Consensus 177 ~~l~ 180 (251)
..++
T Consensus 147 ~~i~ 150 (157)
T TIGR00714 147 SSAE 150 (157)
T ss_pred HHHH
Confidence 4433
No 427
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.93 E-value=93 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=13.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHH
Q 025526 95 SSFEDPEKILEQAVLEMNDDLVKM 118 (251)
Q Consensus 95 Dk~EDP~~mLdQ~Ireme~~L~ka 118 (251)
|.+.| +.+.--.+||+...|.-.
T Consensus 22 d~lsD-d~LvsmSVReLNr~LrG~ 44 (135)
T KOG4196|consen 22 DRLSD-DELVSMSVRELNRHLRGL 44 (135)
T ss_pred CCcCH-HHHHHhhHHHHHHHhcCC
Confidence 45555 344556677777765544
No 428
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=48.86 E-value=3.9e+02 Score=29.13 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 74 ~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
...++|+++...+.-...+.=..+++=...++..-.--++.+..+...+.......+.+...++.+....+.++....+.
T Consensus 177 ~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (1047)
T PRK10246 177 TGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQ 256 (1047)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 154 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN--NLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~--~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
- .-.-+...+.+.......+......++.++.... ..-..+..++..+.....+...+......++.......
T Consensus 257 ~---~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (1047)
T PRK10246 257 Q---EASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIR 331 (1047)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=48.73 E-value=2e+02 Score=25.83 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ--------------- 141 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~--------------- 141 (251)
||+++++.|.+-.-.+-+. ||- .--.++|.+++.+|.++-.++-.+...++.+-.-..+...
T Consensus 2 ~~~~~~d~~~~~~~k~~E~--D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls 79 (234)
T cd07665 2 MFNKATDAVSKMTIKMNES--DVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALS 79 (234)
T ss_pred hhhHHHHHHhccccCcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH
Q ss_pred ----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-----
Q 025526 142 ----ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ----------QKNVVNNLVSNTRLLES----- 202 (251)
Q Consensus 142 ----~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~----------~~~~v~~Lk~~l~~Le~----- 202 (251)
...+.+.+...-.+..-+...-..-.=..+|-.-+...+.-.++ ++..+.+-+.++.+|..
T Consensus 80 ~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~d 159 (234)
T cd07665 80 RALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPD 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 203 KIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 203 ki~e~k~k~~~LkAr~~~AkAq 224 (251)
|+.+++.+...+..+...++..
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~ 181 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERD 181 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 430
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.72 E-value=2.2e+02 Score=26.10 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=19.6
Q ss_pred cccccCCCcccccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Q 025526 63 HCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLE 110 (251)
Q Consensus 63 ~~~~~~~~~~~~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ire 110 (251)
.||...||. ..|-...+-+...-+..-.+=.-...+|.+++..
T Consensus 142 ~~~~~~gg~-----~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 142 GCYSKPGGY-----QLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp TTTSSTTHH-----HHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred CCCCCCCCH-----HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 455555553 2333433333333333333323345677777666
No 431
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.57 E-value=2.4e+02 Score=26.50 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 190 (251)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v 190 (251)
....+.+....+-........+..++.++..+++.++..--.+.+.-|+ .=.+...+-..+..+....+.....+
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De-----~Rkeade~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADE-----LRKEADELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666666666677777888899999999999999999998887665 22233445666777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 025526 191 NNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFP 233 (251)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~ 233 (251)
..+...++.+..+|..++.+....+-+...-..+++.-+....
T Consensus 231 ~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EK 273 (294)
T COG1340 231 RNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEK 273 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887777777776666556555554443
No 432
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.54 E-value=4.1e+02 Score=29.27 Aligned_cols=107 Identities=17% Similarity=0.275 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HH--HHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKR-------LENKCKAAEQASEDWYRKAQLALQKGEEDL-AR--EALKRRKS 171 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~-------le~k~~~~~~~~~~~e~rA~~AL~~G~EdL-Ar--eAL~rk~~ 171 (251)
.|.|+.+.|....+.++........-.-.+ .+.+++.+...+.+++..... |....+.+ |+ +++.++-.
T Consensus 226 tiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~-l~~ekeq~~a~~t~~~k~kt~ 304 (1200)
T KOG0964|consen 226 TIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTN-LREEKEQLKARETKISKKKTK 304 (1200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence 355566666666666555543333222222 223333333333333333222 22211111 11 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
++=++..++.+++.-.++-...-..+..++++|.+-+.
T Consensus 305 lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~ 342 (1200)
T KOG0964|consen 305 LELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKD 342 (1200)
T ss_pred hhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555544433333333333333333333333
No 433
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.45 E-value=1.7e+02 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQ 124 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~ 124 (251)
.-.++...+.+..|.+++.....
T Consensus 79 ~eA~~~~~eye~~L~~Ar~EA~~ 101 (181)
T PRK13454 79 QKAVEAEKAYNKALADARAEAQR 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 434
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.41 E-value=1.1e+02 Score=22.54 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
...+.|..+-..+...+.+|+..+..++..+.+++.+.+.+
T Consensus 19 eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 19 EEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 435
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.24 E-value=1.2e+02 Score=29.55 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLASQKRLENKC 136 (251)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~k~ 136 (251)
+.++..++...+-.+.+++..+.+++
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433334444444333
No 436
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=48.11 E-value=8.4 Score=35.66 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=25.0
Q ss_pred eEeeccccccCCCCcccccCCCcccccCchHHHHHHHHHHHH
Q 025526 49 LKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYA 90 (251)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~M~if~Rl~~lira~i 90 (251)
-.+..+|+++-- -|.+....+||+|+||.+.+++..
T Consensus 13 Y~lNeSRLaRlM------S~dkeeA~hMGlWDR~KD~FRseK 48 (317)
T PRK15379 13 YTLNESRLAHLL------SADKEKAIHMGGWDKVQDHFRAEK 48 (317)
T ss_pred ccccHHHHHHhh------CCchHhhhhhhhHHHHHHHHhhhh
Confidence 344555555542 233566789999999999999864
No 437
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.00 E-value=3e+02 Score=27.55 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (251)
Q Consensus 120 ~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (251)
.+++.+.....+++....+++ ..-++..++..++.-|...||+-- ........++..+.+|++....-...-+..+
T Consensus 255 v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~-~~l~~~~~~~~~ltqqwed~R~pll~kkl~L 330 (521)
T KOG1937|consen 255 VEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLM-GKLAELNKQMEELTQQWEDTRQPLLQKKLQL 330 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444455555555556665 667788889999999999998743 4556667778888888887665554433333
No 438
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=47.97 E-value=1.6e+02 Score=24.28 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+++.+..++...-..+.+.+++.+ .-.++...+.+..|.+++......+...+.-.. ........+-+..+....
T Consensus 23 ~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~--~~~~~a~~~a~~~~~~~~ 100 (159)
T PRK09173 23 VPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE--ALTAEAKRKTEEYVARRN 100 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 155 QKGEEDLAREALKRRKSYADNANALKAQLDQ 185 (251)
Q Consensus 155 ~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~ 185 (251)
..++.++..+--.-..++..++..+--++..
T Consensus 101 ~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~ 131 (159)
T PRK09173 101 KLAEQKIAQAETDAINAVRSSAVDLAIAAAE 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.86 E-value=1.6e+02 Score=24.47 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNT--RLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l--~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
..++.+++..++..+..++.....|...+ .+|...|.+++.+...+..|...
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333222 23334444444444444444433
No 440
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.58 E-value=2.4e+02 Score=26.39 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
.-.+.|+++.+.+|-.+-|++=-++..+--+++-+...+++++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~ 127 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEET 127 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777777777776666666666666666666666655543
No 441
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=47.49 E-value=1.2e+02 Score=22.89 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=53.5
Q ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 91 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 91 n~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
..++.++++-..+|.+.....+.-+.+++...++-...-+.++..++-..+.+..+..++..
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999888777653
No 442
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.46 E-value=1.9e+02 Score=25.02 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDL--AREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 130 k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdL--AreAL~rk~~~e~~~~~l~~ql~ 184 (251)
..++.+++.....+.+.+.+...+ ..|+++- =...|.+...++.+...++.+++
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555554444 3333322 12233444444444444444444
No 443
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=47.32 E-value=2.1e+02 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKC-KAAEQASEDWYRKAQLALQKGEE 159 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~-~~~~~~~~~~e~rA~~AL~~G~E 159 (251)
+.+..|.+++...+.+++..+..-.++ .++..+..+|+..+..-++.+++
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~ 91 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ 91 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556655555555444333332 33334445555555444444433
No 444
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=47.27 E-value=1.6e+02 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQV 125 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v 125 (251)
.+....+.+..+.+++......
T Consensus 58 a~~~~~e~e~~l~~A~~ea~~i 79 (164)
T PRK14473 58 LANAKRDYEAELAKARQEAAKI 79 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333
No 445
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.20 E-value=1.5e+02 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~ 141 (251)
..+++++..+......+.+.....+.=++++..
T Consensus 17 q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 17 QQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555555555544444444444433
No 446
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=47.19 E-value=49 Score=23.19 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 151 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 151 ~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
..|+..|| |.+.+.+..+++....+..+....++.|+..+.++|.
T Consensus 8 q~AiasGD-------La~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 8 QQAIASGD-------LAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHcCc-------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 45566665 4455555555666666666666666666666666654
No 447
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=47.01 E-value=2.1e+02 Score=25.49 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR--KSYADNANA 178 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk--~~~e~~~~~ 178 (251)
+.-|...|.++++.+..+++.+-.+.......-.+....+.++.++-++=- .=-..||.|..---+ ...+.....
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~---sWs~~DleRFT~Lyr~dH~~e~~e~~ 110 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH---SWSPADLERFTELYRNDHENEQAEEE 110 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCChHHHHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555555555544444444444444444444443321100 002356665432222 223344444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNT 197 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l 197 (251)
.+..++.++..++.+-.++
T Consensus 111 ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 111 AKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444443
No 448
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=46.77 E-value=1e+02 Score=30.54 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHHHHHh--hcccC--CHHH---HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAI--LSSFE--DPEK---ILEQAVLEMNDDLVKMR-QATAQV-LASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 76 M~if~Rl~~lira~in~~--lDk~E--DP~~---mLdQ~Ireme~~L~kar-~~lA~v-~A~~k~le~k~~~~~~~~~~~ 146 (251)
=+.++||.+.+-++.+.- |+.++ ||.. |.-+...+.--+..+.. +++-.. -.+.....++.+++++++++-
T Consensus 60 e~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka 139 (473)
T PRK15362 60 SNALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKA 139 (473)
T ss_pred HHHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889988887765555 77777 6753 23333333322222211 111111 112244566788889999988
Q ss_pred HHHHHHHHhcCC
Q 025526 147 YRKAQLALQKGE 158 (251)
Q Consensus 147 e~rA~~AL~~G~ 158 (251)
.+++..|-+.|=
T Consensus 140 ~e~adkA~KagI 151 (473)
T PRK15362 140 IEQEDKARKAGI 151 (473)
T ss_pred HHHHHHHHhccH
Confidence 888888877764
No 449
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.59 E-value=2.9e+02 Score=27.03 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHhhc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILS---SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (251)
Q Consensus 78 if~Rl~~lira~in~~lD---k~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~ 129 (251)
+|+.+..++...=..+.+ .+++-..-++....+.++.+.+++....+++.+.
T Consensus 22 l~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A 76 (445)
T PRK13428 22 VVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEA 76 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555443333333 3333345555555555555666665555554443
No 450
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.56 E-value=71 Score=25.21 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.+..++++++++++.|..++..+...+.+++.-++.|
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666555555
No 451
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=46.55 E-value=6.5 Score=40.80 Aligned_cols=105 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 187 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~ 187 (251)
++|+.++.....+....-...-..+++++..++.++.+...... ......--.......+.+.+...++.++.+..
T Consensus 12 F~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~----~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~ 87 (759)
T PF01496_consen 12 FRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLP----EKNDKPDAPKPKEIDELEEELEELEEELRELN 87 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCccc----ccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444445555555555555555443333 11111111111144455555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
+..++|.+++.+++.+...++...+.+..
T Consensus 88 ~~~e~L~~~~~~L~E~~~~L~~~~~~l~~ 116 (759)
T PF01496_consen 88 ENLEKLEEELNELEEEKNVLEEEIEFLEE 116 (759)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666665555555555554
No 452
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.54 E-value=1.6e+02 Score=23.94 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025526 80 DRLARVVK 87 (251)
Q Consensus 80 ~Rl~~lir 87 (251)
+++.+++.
T Consensus 27 ~pi~~~l~ 34 (156)
T PRK05759 27 PPIMKALE 34 (156)
T ss_pred HHHHHHHH
Confidence 33333333
No 453
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.46 E-value=2.5e+02 Score=26.19 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLAS---------QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 169 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~---------~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk 169 (251)
+-..-+++.+.+.++.+.+++..+..-... .......+.+++.+..+.+.+.......+.++ -=+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~-----~P~v 244 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQ-----NPQV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----CCch
Confidence 334667777777777777777666554331 22233334444444444444433222222221 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNV--------VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLS 228 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~--------v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn 228 (251)
..+..++..++.+++..... .......+..|+...+-.+...+.+.++...++.....+
T Consensus 245 ~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~ 311 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQ 311 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333444444444443332 233445566666666666666777777766666554443
No 454
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=46.43 E-value=2.8e+02 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=18.8
Q ss_pred cCchHHHHHHHHHHHHHHhhcccCCHHHHH
Q 025526 75 RMNLFDRLARVVKSYANAILSSFEDPEKIL 104 (251)
Q Consensus 75 ~M~if~Rl~~lira~in~~lDk~EDP~~mL 104 (251)
.+++|.+|..+.. ...++-..+.||+.+-
T Consensus 2 ~~~~~~kl~~~~~-r~~el~~~L~~p~v~~ 30 (363)
T COG0216 2 KPSLLEKLESLLE-RYEELEALLSDPEVIS 30 (363)
T ss_pred CchHHHHHHHHHH-HHHHHHHHhcCccccc
Confidence 3568888877665 5566666666776443
No 455
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.42 E-value=2.4e+02 Score=26.02 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
+.....++++.+..+..+..+-..|+.||+.-+.+++-..-
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK 211 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK 211 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443333
No 456
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=46.21 E-value=2.1e+02 Score=25.17 Aligned_cols=91 Identities=9% Similarity=0.115 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (251)
++-.++..+...-..+..+...+.+...+...-...|+.|-.-.+-.+....+......+..++.. ...++..+...
T Consensus 110 svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~i---s~~~k~El~rF 186 (224)
T cd07623 110 AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEI---SKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344455556666666666666666666665554567776655555555555555555444444433 22334444444
Q ss_pred -HHHHHHHHHHHHHH
Q 025526 201 -ESKIQEARSKKDTL 214 (251)
Q Consensus 201 -e~ki~e~k~k~~~L 214 (251)
..++.+++.-...+
T Consensus 187 ~~erv~dfk~~l~~~ 201 (224)
T cd07623 187 EKNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 35566666555544
No 457
>PHA02047 phage lambda Rz1-like protein
Probab=45.98 E-value=1.3e+02 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~k 203 (251)
++.+..+++.++.++..+......++.+
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 458
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=45.94 E-value=1.5e+02 Score=23.60 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 025526 121 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 161 (251)
Q Consensus 121 ~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdL 161 (251)
.+..+.......+....+++....++...|..-+..++.+.
T Consensus 44 ~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a 84 (140)
T PRK07353 44 NRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 459
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.91 E-value=1.9e+02 Score=24.53 Aligned_cols=124 Identities=9% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 82 LARVVKSYANAILSSFEDPE---KILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 82 l~~lira~in~~lDk~EDP~---~mLdQ~Ireme~~L~kar~~lA~v~-A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
+..+++.-+++.++.+.+.- .-++......+.++.+.|..+.... .+-..+..+.+.++.+++++..+...=+.+=
T Consensus 24 i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 24 IMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.++=-..=.+|.+..+....++..+.+....+ ...+..++..|+..|
T Consensus 104 ~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki---~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 104 RAEVKLDLNLEKGRIREEQAKQELKIQELNNKI---DTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
No 460
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=45.78 E-value=3.2e+02 Score=27.17 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 025526 114 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 164 (251)
Q Consensus 114 ~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAre 164 (251)
++.++..-+-=-.|+.++.+.+.++++.+++.+++=+..=-++=+|+-|..
T Consensus 351 ~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~ 401 (446)
T PF07227_consen 351 QIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASR 401 (446)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333333334456666777777777777777665554444444444433
No 461
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.65 E-value=1.6e+02 Score=23.73 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 164 EALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~ 184 (251)
..+.....++-.+..++..++
T Consensus 50 ~~l~~l~~~e~~~~k~q~~~~ 70 (139)
T PF05615_consen 50 RLLKELAQFEFSILKSQLILE 70 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 462
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=45.55 E-value=2.4e+02 Score=25.67 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025526 209 SKKDTLKARAQ 219 (251)
Q Consensus 209 ~k~~~LkAr~~ 219 (251)
.+...+++...
T Consensus 186 ~~~~~~~~~l~ 196 (327)
T TIGR02971 186 AEVKSALEAVQ 196 (327)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 463
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=45.45 E-value=1.4e+02 Score=29.24 Aligned_cols=54 Identities=7% Similarity=0.064 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (251)
Q Consensus 128 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (251)
....+..+++.++++++.|+.|... +..+|..+...++..+.++..+-.-|...
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~---------------~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA---------------TIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666666666555 12234455555555555555555544443
No 464
>PF11047 SopD: Salmonella outer protein D; InterPro: IPR022747 The proteins in this entry are also known as secreted effector proteins. Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. They contribute to the formation of Salmonella-induced filaments (Sifs) in infected epithelial cells and to replication in macrophages []. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand [].; GO: 0009405 pathogenesis, 0033644 host cell membrane
Probab=45.30 E-value=10 Score=35.32 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.2
Q ss_pred CcccccCchHHHHHHHHHHH
Q 025526 70 GALNTRMNLFDRLARVVKSY 89 (251)
Q Consensus 70 ~~~~~~M~if~Rl~~lira~ 89 (251)
.-..++||+|+||.|.+++.
T Consensus 28 KEeA~hMGlWDKfKD~FRse 47 (319)
T PF11047_consen 28 KEEATHMGLWDKFKDWFRSE 47 (319)
T ss_pred hhhhhhhhhHHHHHHHHhcc
Confidence 44568999999999999986
No 465
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=45.19 E-value=1.9e+02 Score=24.50 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
..||+-+++++ |.+++|..+...- . ....++.=..+.......+......+++.++-+-|...+.+.+-+..-.
T Consensus 86 ~~d~efLme~m--e~rE~le~~~~~~-d---~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~ 159 (171)
T PRK05014 86 VRDTAFLMEQM--ELREELEDIEQSK-D---PEAALESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLR 159 (171)
T ss_pred cCCHHHHHHHH--HHHHHHHhhcccc-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 34776666654 4555555443210 0 0122333344555666666677777888888888888888876665554
Q ss_pred HHHHH
Q 025526 177 NALKA 181 (251)
Q Consensus 177 ~~l~~ 181 (251)
..++.
T Consensus 160 ~ei~~ 164 (171)
T PRK05014 160 SEVEQ 164 (171)
T ss_pred HHHHH
Confidence 44443
No 466
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=44.83 E-value=1.4e+02 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
+++++..+|..|+.+..++...++.++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 467
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.80 E-value=3.3e+02 Score=27.17 Aligned_cols=139 Identities=9% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHH
Q 025526 86 VKSYANAILSSFEDPEK---ILEQAVLEMNDDLVKMRQATAQVLA-SQKRLENKCKAAEQA-SEDWYRKAQLALQKGEED 160 (251)
Q Consensus 86 ira~in~~lDk~EDP~~---mLdQ~Ireme~~L~kar~~lA~v~A-~~k~le~k~~~~~~~-~~~~e~rA~~AL~~G~Ed 160 (251)
+...+|+++..+.+... ..+-.|..+...+..+...++.+.. ....+++.++....+ ..+...+....++.-..
T Consensus 228 l~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~- 306 (582)
T PF09731_consen 228 LVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRA- 306 (582)
T ss_pred HHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 161 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 161 LAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
+.--.-+.+++.....+++.++. +--.+|+.+-..+..++.+.-..+..-.-+.-......+|.+
T Consensus 307 --~~~~~~~~e~~~~~~~l~~~~~~--~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~ 371 (582)
T PF09731_consen 307 --ELEEELREEFEREREELEEKYEE--ELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQ 371 (582)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=44.78 E-value=1.9e+02 Score=26.77 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
-|.|+.++|+.+..++.....+...+.+|++.+.++++++.+
T Consensus 225 kLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 225 KLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888888888888887777777777655
No 469
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=44.42 E-value=2.8e+02 Score=26.21 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=17.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 154 LQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 154 L~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
..-|.-|..++-+.+....++....-..
T Consensus 73 a~~G~g~~~~~r~~~~~~i~~~~~~q~~ 100 (332)
T TIGR01541 73 DRFGLGDKQRERLDARLQIDRTFRKQQR 100 (332)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777776665555444333
No 470
>COG5570 Uncharacterized small protein [Function unknown]
Probab=44.39 E-value=1.1e+02 Score=21.52 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHHHHHHHHHHHH
Q 025526 132 LENKCKAAEQASEDWYRKAQLALQK-GEEDLA-REALKRRKSYADNANALKAQ 182 (251)
Q Consensus 132 le~k~~~~~~~~~~~e~rA~~AL~~-G~EdLA-reAL~rk~~~e~~~~~l~~q 182 (251)
++..+.++++....++.....|+.. +-||++ ++.-.+|..+.++++.|+.+
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677888889999999999988865 446665 44555566666666666543
No 471
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=44.31 E-value=3.2e+02 Score=26.79 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
.+|++=-..+.++|.+++..-.++...+...+.++.+.+.+..+.-+.|+..
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~ 79 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARED 79 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666555444444444444444555444444444444443
No 472
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.25 E-value=3.6e+02 Score=27.34 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
|..+.-..+.++..|-+.+..|..++..-+.+++.||
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445677888888888888888888888888887
No 473
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=44.11 E-value=3.1e+02 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 199 LLESKIQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~AkAq 224 (251)
....++.+++.++..+.++...++.+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444
No 474
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.08 E-value=87 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 211 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~ 211 (251)
.++++.+|...+..|..|++-|..-+....++|+|+
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555555566666666555555555555555553
No 475
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=43.98 E-value=99 Score=20.86 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
-..+++.+...+|++..-.-.....+.+++..|.|+
T Consensus 8 kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~ 43 (45)
T PF04394_consen 8 KDKQIEELQKLLDQQQQLALQDNKKLEELKAELEEY 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888888888887773
No 476
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=43.65 E-value=2.5e+02 Score=25.40 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 100 P~~mLdQ~Ireme~~L~kar~~lA~v~A~-~k~le~k~~~~~~~~~~~e~r 149 (251)
+..+......+..+.+.+++......++. +.++++...+++.+.+.....
T Consensus 68 ~~~~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~ 118 (281)
T PRK06669 68 AFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEE 118 (281)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544555555555555554444442 223333344444444443333
No 477
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=43.57 E-value=68 Score=29.19 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHhhcccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP--~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~ 145 (251)
+||.||+.+=.. --|| +.+|.+.|+.-=+..--+-+.+--.-..-++++.++++++.++..
T Consensus 11 ~lf~RL~~ae~~--------prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQ--------PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCC--------CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666642211 3366 477777777666666555555544444455555555555555443
No 478
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.49 E-value=2.3e+02 Score=25.04 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025526 131 RLENKCKAAEQ 141 (251)
Q Consensus 131 ~le~k~~~~~~ 141 (251)
.+-++|.....
T Consensus 94 dl~~ryek~K~ 104 (207)
T PF05010_consen 94 DLHKRYEKQKE 104 (207)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 479
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=43.41 E-value=4.9e+02 Score=28.67 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=27.5
Q ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 138 (251)
Q Consensus 88 a~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~ 138 (251)
+++..+.|.+---.+.|..-+.|.-..|-+....+|++++.++.+++++-.
T Consensus 858 s~~~~lad~~~~qs~qln~p~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ 908 (1283)
T KOG1916|consen 858 SNVANLADSFNEQSQQLNHPMEDLLPQLLAQQETMAQLMASQKELQRQLSN 908 (1283)
T ss_pred cchHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333344444433334444444445555555666677777777777666543
No 480
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.23 E-value=3e+02 Score=26.12 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~ 121 (251)
+...||.+.+...+.+-++.+.-
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlM 31 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLM 31 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 481
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=43.21 E-value=3.6e+02 Score=27.09 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 025526 199 LLESKIQEARSKK 211 (251)
Q Consensus 199 ~Le~ki~e~k~k~ 211 (251)
..+.|-.+.+.++
T Consensus 318 ~ae~K~~Eaq~er 330 (489)
T PF05262_consen 318 EAEKKEEEAQQER 330 (489)
T ss_pred hhhHHHHHHHHHH
Confidence 3344444444443
No 482
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=43.12 E-value=2e+02 Score=24.05 Aligned_cols=125 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 025526 100 PE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (251)
Q Consensus 100 P~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (251)
|. .+|++=-..+.++|.++...-..+.......+.++...+.++.+.-..|....++-.++.-..+
T Consensus 34 pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A------------- 100 (167)
T PRK14475 34 ALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKL------------- 100 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSLLEFPVFSASATSLVL 244 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~~l~~~~~~~a~~~f~ 244 (251)
..+....+...-.+.+.....+..+...-.+.....-|.+-+.+.++.-.....++.|.
T Consensus 101 -------~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~~~~~~lid~~i 159 (167)
T PRK14475 101 -------EEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAGAKSDPLVDAAI 159 (167)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHH
No 483
>PRK10722 hypothetical protein; Provisional
Probab=43.00 E-value=1.3e+02 Score=27.41 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
...+.++-..|+.-.+.-..+++.|+++...|+.++....+|++.|..-++.
T Consensus 157 ~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERq 208 (247)
T PRK10722 157 QLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQ 208 (247)
T ss_pred HHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.65 E-value=1e+02 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKF 223 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkA 223 (251)
+++|...+..|+..|..++..+..-.+...+|.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PRK15380 pathogenicity island 1 protein SopD2; Provisional
Probab=42.52 E-value=13 Score=34.23 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=0.0
Q ss_pred cccccccccCccceeEeeccccccCCCCcccccCCCcccccCchHHHHHHHHHH
Q 025526 35 KPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKS 88 (251)
Q Consensus 35 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~if~Rl~~lira 88 (251)
+|.+-|| |----..+.-.|+++- -.+-......||+|+||++.+++
T Consensus 1 mpvtL~f--Gn~hny~in~SRlarl------ms~dkeeA~~MG~WDR~KD~Frs 46 (319)
T PRK15380 1 MPVTLSF--GNRHNYEINHSRLARL------MSPDKEEALYMGVWDRFKDCFRT 46 (319)
T ss_pred CCeeEec--cCcccccccHHHHHHH------hCCccccchhhchHHHHHHHHhc
No 486
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=42.51 E-value=3.1e+02 Score=26.10 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
+-.++...+.+..+.+.+--++-.-..+.+-.+.+..+++.+-.-++.|++.|++. .....-+.++++..+
T Consensus 235 ~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~---------~~vk~vv~el~k~~~ 305 (336)
T PF05055_consen 235 EEALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDE---------EAVKEVVKELKKNVE 305 (336)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc---------hhHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 185 QQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
...+++++|.+.+-.==.-|...+.
T Consensus 306 ~f~~qleELeehv~lC~~tInrAR~ 330 (336)
T PF05055_consen 306 SFTEQLEELEEHVYLCFKTINRART 330 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=42.50 E-value=37 Score=27.74 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHH
Q 025526 82 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 116 (251)
Q Consensus 82 l~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~ 116 (251)
+.+-++-++|-++++.|.....|+|.++|++.=|+
T Consensus 88 ~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLD 122 (135)
T PF15466_consen 88 IRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLD 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=42.46 E-value=2.1e+02 Score=24.08 Aligned_cols=80 Identities=8% Similarity=0.098 Sum_probs=0.0
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
+|. .+|+.--..+.+++.++.....++.......+.++.+.+.++.+.-..|+.--++-.++.-..+-.+..+..+...
T Consensus 45 kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~ 124 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFE 124 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 025526 178 A 178 (251)
Q Consensus 178 ~ 178 (251)
.
T Consensus 125 ~ 125 (167)
T PRK08475 125 E 125 (167)
T ss_pred H
No 489
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.45 E-value=4e+02 Score=27.46 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 139 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
...+....++. ..++.+..+.+..++-......++...+++..+..++.++.+...+...|+..++++.+.++....-+
T Consensus 344 ~~q~~~~~~~~-l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laE 422 (656)
T PRK06975 344 LNRKVDRLDQE-LVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAE 422 (656)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHH
Q 025526 219 QSAKFVFPLSLLEFPVFSASATSLVL 244 (251)
Q Consensus 219 ~~AkAq~~vn~~l~~~~~~~a~~~f~ 244 (251)
.-.=..-.-....-.-|..+++..+.
T Consensus 423 ae~Ll~lA~q~L~l~~dv~~A~~~L~ 448 (656)
T PRK06975 423 VEQMLSSASQQLQLTGNVQLALIALQ 448 (656)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH
No 490
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.37 E-value=1.4e+02 Score=24.36 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (251)
|.+..++-+...............++.+...+..++.++.+++.-.+.+..-.+.+
T Consensus 59 L~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~ 114 (134)
T cd04779 59 LAEIKDQLEEVQRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMK 114 (134)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=42.31 E-value=1.9e+02 Score=23.62 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
++.+..+..-+..+...+..+....-....++.++......+..+...-+.+ ++.+...--
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~-------------------~eilr~~g~ 103 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRK-------------------QEILRNRGY 103 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHcCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 025526 185 QQKNVVNNLVSNTRLLESKIQE---ARSKKDTLKARAQ 219 (251)
Q Consensus 185 ~~~~~v~~Lk~~l~~Le~ki~e---~k~k~~~LkAr~~ 219 (251)
.+....+.|...+..+...+.. ++.+.++|.++.+
T Consensus 104 ~l~~eEe~L~~~le~l~~~l~~p~~~~~rl~El~a~l~ 141 (141)
T PF13874_consen 104 ALSPEEEELRKRLEALEAQLNAPAQLKGRLNELWAQLR 141 (141)
T ss_dssp --------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhC
No 492
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=42.21 E-value=2.3e+02 Score=24.62 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhc
Q 025526 99 DPE-KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---------------------KAQLALQK 156 (251)
Q Consensus 99 DP~-~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~---------------------rA~~AL~~ 156 (251)
||. .-..++|.+++.+|.++...+..+...++.+..-+.+.-..+..+-. .....-..
T Consensus 3 D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a 82 (216)
T cd07627 3 DEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQA 82 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 025526 157 GEEDLA---------------REALKRRKSYADNANALKAQLDQQKNVVNNL-------VSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 157 G~EdLA---------------reAL~rk~~~e~~~~~l~~ql~~~~~~v~~L-------k~~l~~Le~ki~e~k~k~~~L 214 (251)
.+|.+- |.++.++...-.....+...++......++| ..++..++..|.++..+....
T Consensus 83 ~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a 162 (216)
T cd07627 83 LQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASEL 162 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 025526 215 KARAQS 220 (251)
Q Consensus 215 kAr~~~ 220 (251)
+.+...
T Consensus 163 ~~~~e~ 168 (216)
T cd07627 163 KKEFEE 168 (216)
T ss_pred HHHHHH
No 493
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.18 E-value=1.4e+02 Score=23.36 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 167 KRRKSYADNANAL--KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 167 ~rk~~~e~~~~~l--~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.|....|..+..+ ...+..++-.+.+++..+..++.+++-+.+..+.|
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 494
>PRK01203 prefoldin subunit alpha; Provisional
Probab=42.06 E-value=99 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 162 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 162 AreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
+++...+...++++++.|+++++.++....++...+..++.
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 495
>PRK09546 zntB zinc transporter; Reviewed
Probab=41.96 E-value=2.8e+02 Score=25.49 Aligned_cols=114 Identities=9% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 83 ARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV----KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 83 ~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~----kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
.+++-.-++.++|...+....++..+.++++.+- ..+..+..+...--.+.+-+...+.-+..+.......+....
T Consensus 141 ~~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~ 220 (324)
T PRK09546 141 GGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDD 220 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 159 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (251)
Q Consensus 159 EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (251)
...-+.+..+.....+.+..+........+......++
T Consensus 221 ~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~ 258 (324)
T PRK09546 221 RRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAE 258 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK08453 fliD flagellar capping protein; Validated
Probab=41.84 E-value=1.6e+02 Score=30.65 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
|||.||..++...+...-..+..-..-|...+..+++++.+.. .++.....+++.++..++..+.++..+
T Consensus 599 Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e---~rL~~ry~rl~~qFsAmDs~IsqmNsq 668 (673)
T PRK08453 599 GIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQ---ELLKTRYDIMAERFAAYDSQISKANQK 668 (673)
T ss_pred cHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.66 E-value=1.3e+02 Score=21.42 Aligned_cols=97 Identities=10% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 025526 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN----TRLLESK 203 (251)
Q Consensus 128 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~----l~~Le~k 203 (251)
....+...++++...+..-+......--.++.+-+...+.+...+...+...+..++.+......|... -..++.+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 204 IQEARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 204 i~e~k~k~~~LkAr~~~AkAq 224 (251)
+.++...-+.|......-...
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 498
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.59 E-value=2.3e+02 Score=24.43 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 118 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (251)
Q Consensus 118 ar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (251)
.|+=....-..-..|.+=.+++...++.+..-...++..|-.. +..+-..+.+++..+..|+.+...++..+..++...
T Consensus 72 IRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk-~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 72 IRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRK-ALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 025526 198 RLLESKIQE--------ARSKKDTLKARAQSAKFV 224 (251)
Q Consensus 198 ~~Le~ki~e--------~k~k~~~LkAr~~~AkAq 224 (251)
..++.+..+ ...+.+.|+...+.-+.+
T Consensus 151 e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 151 EQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=41.55 E-value=2.1e+02 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
.+...++.+++.+++|...+.+++..|+++-.+...+....+........+.
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~ 142 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQ 142 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.50 E-value=1.4e+02 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 133 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 133 e~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
..++++.++.+++.++.-+.|-++||+ +++++.++-+.++...+.++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~----~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDM----KKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHH
Done!