Query 025526
Match_columns 251
No_of_seqs 152 out of 816
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 97.5 0.0082 2.8E-07 56.4 19.4 121 78-214 349-469 (471)
2 4abm_A Charged multivesicular 97.2 0.0062 2.1E-07 44.9 11.6 74 119-193 5-78 (79)
3 3na7_A HP0958; flagellar bioge 96.9 0.18 6.3E-06 44.0 20.0 143 102-246 35-184 (256)
4 2fxo_A Myosin heavy chain, car 96.8 0.14 4.8E-06 40.6 17.1 112 104-215 11-124 (129)
5 3na7_A HP0958; flagellar bioge 96.3 0.49 1.7E-05 41.3 20.4 66 88-153 14-79 (256)
6 3oja_B Anopheles plasmodium-re 95.9 0.16 5.4E-06 48.7 14.4 40 111-150 454-493 (597)
7 3oja_B Anopheles plasmodium-re 95.4 0.34 1.2E-05 46.3 14.9 47 168-214 524-570 (597)
8 2gd5_A Charged multivesicular 95.0 0.28 9.5E-06 40.8 11.4 58 99-170 7-68 (179)
9 3vkg_A Dynein heavy chain, cyt 94.9 0.91 3.1E-05 52.6 18.5 50 171-220 2018-2067(3245)
10 3bas_A Myosin heavy chain, str 93.3 1.8 6.3E-05 32.0 12.4 46 104-149 12-57 (89)
11 1i84_S Smooth muscle myosin he 93.3 0.62 2.1E-05 49.1 12.2 41 107-147 858-898 (1184)
12 3vkg_A Dynein heavy chain, cyt 93.2 3.2 0.00011 48.3 18.3 10 110-119 1938-1947(3245)
13 3ajw_A Flagellar FLIJ protein; 92.5 3.1 0.00011 32.5 13.2 104 104-213 10-113 (150)
14 1i84_S Smooth muscle myosin he 92.3 0.85 2.9E-05 48.0 11.6 35 116-150 860-894 (1184)
15 2efr_A General control protein 91.7 4.7 0.00016 33.0 19.6 57 94-150 30-86 (155)
16 3frt_A Charged multivesicular 91.7 4.1 0.00014 35.0 13.3 41 128-168 22-62 (218)
17 2dfs_A Myosin-5A; myosin-V, in 91.6 6.8 0.00023 41.1 17.3 20 131-150 981-1000(1080)
18 1deq_A Fibrinogen (alpha chain 91.3 3.9 0.00013 38.1 13.4 68 96-163 103-170 (390)
19 3mq9_A Bone marrow stromal ant 91.0 4.7 0.00016 37.4 14.1 49 170-221 421-469 (471)
20 3ol1_A Vimentin; structural ge 90.9 4.6 0.00016 31.3 15.2 90 102-217 16-105 (119)
21 2v71_A Nuclear distribution pr 90.8 6.7 0.00023 33.1 19.9 25 125-149 54-78 (189)
22 3ghg_A Fibrinogen alpha chain; 90.7 3 0.0001 40.4 12.4 100 104-212 55-155 (562)
23 1m1j_B Fibrinogen beta chain; 90.4 11 0.00037 36.0 16.1 43 103-145 97-139 (464)
24 3o0z_A RHO-associated protein 90.3 7 0.00024 32.4 18.0 52 99-150 6-57 (168)
25 3oja_A Leucine-rich immune mol 90.1 12 0.0004 34.8 18.1 44 115-158 355-398 (487)
26 4fm3_A Uncharacterized hypothe 89.9 4.7 0.00016 30.6 10.6 64 142-206 33-96 (98)
27 3ghg_A Fibrinogen alpha chain; 89.6 7.9 0.00027 37.5 14.3 94 104-205 62-155 (562)
28 3iox_A AGI/II, PA; alpha helix 89.6 12 0.00041 35.9 15.6 85 110-198 6-90 (497)
29 1m1j_C Fibrinogen gamma chain; 88.9 8.1 0.00028 36.2 13.8 51 166-216 83-133 (409)
30 3u59_A Tropomyosin beta chain; 88.5 6.3 0.00022 29.5 13.3 72 131-207 6-77 (101)
31 3mq7_A Bone marrow stromal ant 88.4 7.7 0.00026 30.3 13.5 81 130-218 28-108 (121)
32 3u1c_A Tropomyosin alpha-1 cha 88.1 6.9 0.00023 29.5 13.3 71 131-206 6-76 (101)
33 2v4h_A NF-kappa-B essential mo 87.7 8.1 0.00028 29.9 11.7 28 107-134 25-52 (110)
34 1deq_A Fibrinogen (alpha chain 86.7 20 0.00069 33.3 15.6 28 51-78 18-46 (390)
35 3oja_A Leucine-rich immune mol 86.3 16 0.00056 33.8 14.3 8 78-85 303-310 (487)
36 3mq7_A Bone marrow stromal ant 86.2 10 0.00036 29.6 13.6 41 168-208 72-112 (121)
37 1l8d_A DNA double-strand break 86.1 4.8 0.00016 30.2 8.7 40 107-146 4-43 (112)
38 3hnw_A Uncharacterized protein 84.9 13 0.00045 29.6 14.6 18 77-94 28-45 (138)
39 2v71_A Nuclear distribution pr 84.9 17 0.00057 30.7 19.3 27 108-134 19-45 (189)
40 3ghg_B Fibrinogen beta chain; 84.3 24 0.00083 33.6 14.3 94 104-206 93-188 (461)
41 2jee_A YIIU; FTSZ, septum, coi 84.1 9.1 0.00031 28.0 8.9 67 86-156 11-77 (81)
42 3ghg_C Fibrinogen gamma chain; 83.4 18 0.00063 33.9 13.0 40 177-216 94-133 (411)
43 1jcd_A Major outer membrane li 82.1 9.2 0.00032 25.7 7.7 45 175-228 5-49 (52)
44 2i1j_A Moesin; FERM, coiled-co 81.0 1.8 6.1E-05 42.3 5.4 16 78-93 276-291 (575)
45 2efr_A General control protein 80.1 23 0.00078 28.9 19.7 103 98-213 14-116 (155)
46 3swk_A Vimentin; cytoskeleton, 79.8 15 0.00053 26.8 10.9 79 117-214 4-82 (86)
47 3m91_A Proteasome-associated A 79.8 10 0.00035 25.3 7.2 42 173-214 8-49 (51)
48 1m1j_C Fibrinogen gamma chain; 79.6 17 0.00059 34.0 11.4 47 163-209 87-133 (409)
49 2b9c_A Striated-muscle alpha t 79.5 23 0.00077 28.5 16.4 102 112-218 23-124 (147)
50 3hnw_A Uncharacterized protein 79.5 22 0.00074 28.3 11.3 96 102-210 35-132 (138)
51 1ic2_A Tropomyosin alpha chain 79.2 15 0.00051 26.3 12.2 22 132-153 4-25 (81)
52 3ol1_A Vimentin; structural ge 79.1 20 0.00068 27.6 15.5 38 102-139 37-74 (119)
53 3efg_A Protein SLYX homolog; x 78.8 10 0.00035 27.4 7.6 49 172-220 12-60 (78)
54 3s4r_A Vimentin; alpha-helix, 76.9 20 0.00069 26.5 12.9 82 115-210 11-92 (93)
55 3nmd_A CGMP dependent protein 75.2 11 0.00038 27.0 6.7 44 171-214 23-66 (72)
56 1lwu_C Fibrinogen gamma chain; 74.9 9.7 0.00033 34.6 8.0 48 170-217 8-55 (323)
57 3abh_A Pacsin2, protein kinase 74.4 43 0.0015 29.0 21.2 137 109-245 139-295 (312)
58 1zbt_A RF-1, peptide chain rel 74.1 14 0.00048 34.2 9.0 97 74-182 11-109 (371)
59 2ke4_A CDC42-interacting prote 73.9 26 0.00088 26.3 9.5 47 163-209 38-90 (98)
60 1m1j_A Fibrinogen alpha subuni 71.9 47 0.0016 31.7 12.0 36 173-208 117-152 (491)
61 2no2_A HIP-I, huntingtin-inter 71.0 32 0.0011 26.2 15.4 31 110-140 12-42 (107)
62 1m1j_B Fibrinogen beta chain; 70.2 76 0.0026 30.2 14.5 48 102-149 103-150 (464)
63 1fxk_C Protein (prefoldin); ar 69.5 36 0.0012 26.1 10.8 92 109-209 4-130 (133)
64 1gd2_E Transcription factor PA 69.0 9.8 0.00034 27.0 5.3 14 188-201 50-63 (70)
65 2yy0_A C-MYC-binding protein; 68.0 11 0.00039 25.1 5.2 27 190-216 21-47 (53)
66 1lwu_C Fibrinogen gamma chain; 67.5 20 0.00067 32.6 8.3 46 165-210 10-55 (323)
67 3qne_A Seryl-tRNA synthetase, 67.3 41 0.0014 32.1 10.9 30 129-158 42-71 (485)
68 3fpp_A Macrolide-specific effl 66.9 14 0.00049 32.3 7.2 24 105-128 68-91 (341)
69 2xdj_A Uncharacterized protein 66.2 35 0.0012 24.8 8.8 34 177-210 23-56 (83)
70 3i2w_A Syndapin, LD46328P; EFC 66.0 63 0.0021 27.6 14.6 81 165-245 186-273 (290)
71 4dk0_A Putative MACA; alpha-ha 66.0 9 0.00031 34.0 5.8 29 94-124 60-88 (369)
72 1gmj_A ATPase inhibitor; coile 65.9 32 0.0011 25.3 7.6 27 182-208 52-78 (84)
73 3bvo_A CO-chaperone protein HS 65.6 55 0.0019 27.5 10.3 73 98-180 129-201 (207)
74 2i1j_A Moesin; FERM, coiled-co 65.3 14 0.00049 35.8 7.4 48 105-152 341-388 (575)
75 3ghg_C Fibrinogen gamma chain; 65.0 91 0.0031 29.2 13.4 95 104-210 36-134 (411)
76 3uo3_A J-type CO-chaperone JAC 64.4 48 0.0016 27.2 9.5 72 98-179 99-170 (181)
77 3tnu_A Keratin, type I cytoske 63.8 49 0.0017 25.6 11.7 14 182-195 85-98 (131)
78 2xdj_A Uncharacterized protein 63.8 40 0.0014 24.5 9.1 41 172-212 25-65 (83)
79 2dq0_A Seryl-tRNA synthetase; 63.7 56 0.0019 30.7 11.0 34 125-158 36-69 (455)
80 3efg_A Protein SLYX homolog; x 62.4 25 0.00086 25.2 6.5 38 171-208 25-62 (78)
81 3mud_A DNA repair protein XRCC 62.0 37 0.0013 28.2 8.2 50 94-143 116-165 (175)
82 2l5g_B Putative uncharacterize 61.3 25 0.00087 22.5 5.5 28 188-215 9-36 (42)
83 4e61_A Protein BIM1; EB1-like 61.3 38 0.0013 25.9 7.6 47 176-222 6-52 (106)
84 3m9b_A Proteasome-associated A 60.8 11 0.00038 33.1 5.1 42 174-215 54-95 (251)
85 3i00_A HIP-I, huntingtin-inter 60.5 57 0.002 25.3 11.5 49 101-149 14-62 (120)
86 3trt_A Vimentin; cytoskeleton, 60.3 40 0.0014 23.5 9.8 35 179-213 40-74 (77)
87 3haj_A Human pacsin2 F-BAR; pa 60.0 1.1E+02 0.0038 28.5 20.8 137 109-245 132-288 (486)
88 3fpp_A Macrolide-specific effl 59.2 13 0.00045 32.5 5.5 28 110-137 66-93 (341)
89 2lf0_A Uncharacterized protein 59.2 28 0.00096 27.2 6.6 53 132-184 8-60 (123)
90 3rkg_A Magnesium transporter M 59.1 42 0.0014 29.5 8.6 107 102-209 130-248 (261)
91 1x79_B RAB GTPase binding effe 58.9 60 0.002 25.0 13.0 42 165-206 36-77 (112)
92 2yy0_A C-MYC-binding protein; 58.7 23 0.0008 23.6 5.3 28 176-203 21-48 (53)
93 2e7s_A RAB guanine nucleotide 58.0 10 0.00035 30.4 4.0 23 112-134 7-29 (135)
94 2x3v_A Syndapin I, protein kin 57.8 96 0.0033 27.0 21.0 137 109-245 130-286 (337)
95 1gd2_E Transcription factor PA 57.5 23 0.00079 25.0 5.4 41 174-214 29-69 (70)
96 1fzc_C Fibrin; blood coagulati 57.2 6.7 0.00023 35.6 3.2 42 166-207 3-44 (319)
97 3nmd_A CGMP dependent protein 56.1 33 0.0011 24.5 6.0 27 173-199 39-65 (72)
98 1m1j_A Fibrinogen alpha subuni 56.0 87 0.003 29.9 10.6 55 101-155 106-160 (491)
99 3a7p_A Autophagy protein 16; c 54.8 84 0.0029 25.5 9.9 46 186-231 101-148 (152)
100 2k48_A Nucleoprotein; viral pr 53.5 72 0.0025 24.3 8.6 20 135-154 36-55 (107)
101 1y4c_A Maltose binding protein 53.4 1.4E+02 0.0049 27.7 12.3 44 78-121 335-378 (494)
102 1y4c_A Maltose binding protein 52.8 1.5E+02 0.005 27.7 15.4 74 102-179 390-464 (494)
103 3w03_C DNA repair protein XRCC 52.4 48 0.0016 27.7 7.5 51 94-144 133-183 (184)
104 1ci6_A Transcription factor AT 52.1 47 0.0016 22.6 6.2 25 189-213 31-55 (63)
105 3aco_A Pacsin2, protein kinase 51.9 1.2E+02 0.0043 26.6 16.9 135 109-245 139-295 (350)
106 2wt7_B Transcription factor MA 51.6 38 0.0013 25.1 6.0 35 178-212 52-86 (90)
107 1fpo_A HSC20, chaperone protei 51.0 96 0.0033 25.0 11.4 73 97-176 86-158 (171)
108 3trt_A Vimentin; cytoskeleton, 50.9 59 0.002 22.5 9.3 32 186-217 40-71 (77)
109 2l5g_A GPS2 protein, G protein 50.7 31 0.0011 21.5 4.5 27 189-215 9-35 (38)
110 2ocy_A RAB guanine nucleotide 50.5 99 0.0034 25.0 16.4 22 110-131 17-38 (154)
111 3o0z_A RHO-associated protein 50.1 1.1E+02 0.0036 25.2 19.4 48 168-215 91-138 (168)
112 2wt7_B Transcription factor MA 50.0 46 0.0016 24.7 6.2 35 171-205 52-86 (90)
113 2efk_A CDC42-interacting prote 49.3 1.2E+02 0.0041 25.6 21.3 59 95-153 94-156 (301)
114 3lbx_A Spectrin alpha chain, e 49.1 95 0.0032 24.4 13.1 120 99-220 29-152 (161)
115 2jee_A YIIU; FTSZ, septum, coi 48.9 74 0.0025 23.1 10.7 37 176-212 29-65 (81)
116 1ci6_A Transcription factor AT 48.8 59 0.002 22.1 6.3 35 175-209 24-58 (63)
117 3hho_A CO-chaperone protein HS 48.6 1.1E+02 0.0036 24.8 10.6 76 98-180 90-166 (174)
118 1fzc_C Fibrin; blood coagulati 47.7 12 0.0004 34.0 3.2 44 174-217 4-47 (319)
119 4fla_A Regulation of nuclear P 47.6 1.1E+02 0.0037 24.6 12.1 18 131-148 72-89 (152)
120 4etp_A Kinesin-like protein KA 47.6 67 0.0023 29.6 8.5 33 174-206 10-42 (403)
121 2fxo_A Myosin heavy chain, car 47.3 95 0.0032 23.9 17.4 52 164-215 45-96 (129)
122 1t2k_D Cyclic-AMP-dependent tr 47.2 61 0.0021 21.7 6.6 28 179-206 27-54 (61)
123 4dk0_A Putative MACA; alpha-ha 47.1 22 0.00076 31.4 4.9 37 99-137 58-94 (369)
124 2efl_A Formin-binding protein 46.7 1.3E+02 0.0045 25.3 23.3 60 95-154 101-164 (305)
125 2l5g_B Putative uncharacterize 45.9 38 0.0013 21.7 4.5 27 175-201 10-36 (42)
126 1g6u_A Domain swapped dimer; d 45.3 33 0.0011 21.9 4.1 25 190-214 22-46 (48)
127 3htk_A Structural maintenance 44.3 65 0.0022 21.2 8.8 39 172-210 10-48 (60)
128 2xz3_A Maltose ABC transporter 44.0 1.1E+02 0.0038 27.9 9.4 46 152-197 371-416 (463)
129 1lwu_B Fibrinogen beta chain; 43.7 27 0.00091 31.6 4.9 7 201-207 41-47 (323)
130 2pms_C Pneumococcal surface pr 43.7 75 0.0026 24.9 6.9 23 131-153 10-32 (125)
131 3lss_A Seryl-tRNA synthetase; 43.5 1.9E+02 0.0064 27.5 11.0 24 190-213 113-136 (484)
132 1l8d_A DNA double-strand break 43.3 96 0.0033 22.8 11.3 34 172-205 69-102 (112)
133 1fxk_C Protein (prefoldin); ar 43.2 65 0.0022 24.5 6.6 40 176-215 3-42 (133)
134 2f1m_A Acriflavine resistance 42.9 64 0.0022 27.1 7.1 8 94-101 50-57 (277)
135 2zdi_C Prefoldin subunit alpha 42.8 1.2E+02 0.0041 23.7 8.4 42 106-147 9-53 (151)
136 4fi5_A Nucleoprotein; structur 42.8 1.1E+02 0.0039 23.5 8.3 22 195-216 69-90 (113)
137 3iv1_A Tumor susceptibility ge 42.7 93 0.0032 22.4 10.0 47 172-218 16-62 (78)
138 2b9c_A Striated-muscle alpha t 42.5 1.3E+02 0.0044 24.0 16.0 51 103-153 21-71 (147)
139 2oqq_A Transcription factor HY 41.4 68 0.0023 20.5 5.7 23 193-215 8-30 (42)
140 1sum_B Phosphate transport sys 41.3 1.3E+02 0.0045 24.7 8.7 30 137-166 17-46 (235)
141 2i0m_A Phosphate transport sys 40.9 1.4E+02 0.0048 24.0 9.4 28 139-166 19-46 (216)
142 2eqb_B RAB guanine nucleotide 40.1 1.2E+02 0.004 22.8 13.8 38 171-208 51-89 (97)
143 3m6j_A Uncharacterized protein 39.6 89 0.003 25.0 6.7 43 61-104 74-118 (145)
144 3swy_A Cyclic nucleotide-gated 39.4 77 0.0026 20.6 7.2 39 104-142 3-41 (46)
145 2zvf_A Alanyl-tRNA synthetase; 39.2 64 0.0022 25.4 6.1 31 184-214 28-58 (171)
146 2xnx_M M protein, M1-BC1; cell 39.1 63 0.0022 26.0 5.9 46 184-229 69-114 (146)
147 1go4_E MAD1 (mitotic arrest de 39.1 1.1E+02 0.0037 23.1 6.9 31 113-143 12-42 (100)
148 2k48_A Nucleoprotein; viral pr 38.8 1.3E+02 0.0044 22.9 10.8 21 149-169 60-80 (107)
149 3cvf_A Homer-3, homer protein 38.2 79 0.0027 22.8 5.8 25 169-193 22-46 (79)
150 2yko_A LINE-1 ORF1P; RNA-bindi 38.1 75 0.0026 27.5 6.6 41 169-209 8-48 (233)
151 3iox_A AGI/II, PA; alpha helix 38.0 2.8E+02 0.0095 26.6 15.9 72 143-214 28-99 (497)
152 3a7p_A Autophagy protein 16; c 37.8 1.6E+02 0.0055 23.8 10.6 86 122-221 30-115 (152)
153 3vmx_A Voltage-gated hydrogen 37.7 86 0.0029 20.6 6.6 37 173-209 3-39 (48)
154 2z5i_A TM, general control pro 37.6 86 0.003 20.6 6.8 18 171-188 9-26 (52)
155 1nkp_B MAX protein, MYC proto- 37.0 1E+02 0.0036 21.6 6.4 10 164-173 44-53 (83)
156 1jnm_A Proto-oncogene C-JUN; B 36.7 48 0.0016 22.4 4.2 7 191-197 39-45 (62)
157 2w83_C C-JUN-amino-terminal ki 36.4 79 0.0027 22.8 5.4 33 176-208 39-71 (77)
158 3swf_A CGMP-gated cation chann 36.1 1.2E+02 0.004 21.7 7.4 36 104-139 5-40 (74)
159 1ez3_A Syntaxin-1A; three heli 35.9 1.3E+02 0.0045 22.3 9.6 23 132-154 48-70 (127)
160 3etw_A Adhesin A; antiparallel 35.7 1.5E+02 0.0052 22.9 13.3 22 123-144 5-26 (119)
161 3frt_A Charged multivesicular 35.5 2E+02 0.007 24.3 12.1 83 98-191 6-88 (218)
162 4etp_A Kinesin-like protein KA 35.5 1.4E+02 0.0047 27.5 8.5 44 171-214 14-57 (403)
163 1fxk_A Prefoldin; archaeal pro 35.4 1.2E+02 0.0042 21.8 7.1 39 109-147 4-42 (107)
164 3ni0_A Bone marrow stromal ant 35.4 1.4E+02 0.0048 22.4 10.2 12 173-184 45-56 (99)
165 1fxk_A Prefoldin; archaeal pro 35.0 1.3E+02 0.0043 21.7 12.8 21 188-208 79-99 (107)
166 2zdi_C Prefoldin subunit alpha 34.9 1E+02 0.0034 24.2 6.6 36 173-208 104-139 (151)
167 2dq3_A Seryl-tRNA synthetase; 34.8 55 0.0019 30.4 5.7 30 128-157 38-67 (425)
168 1hji_B NUN-protein; bacterioph 34.6 42 0.0014 18.8 2.9 18 140-157 9-26 (26)
169 1nkp_B MAX protein, MYC proto- 34.3 96 0.0033 21.8 5.8 25 192-216 51-75 (83)
170 2zqm_A Prefoldin beta subunit 33.8 1.4E+02 0.0047 21.8 13.7 39 109-147 9-47 (117)
171 3ghg_B Fibrinogen beta chain; 33.6 3.2E+02 0.011 25.9 13.6 30 173-202 162-191 (461)
172 3s9g_A Protein hexim1; cyclin 33.6 1.5E+02 0.0052 22.3 9.5 52 166-217 36-87 (104)
173 1cii_A Colicin IA; bacteriocin 33.5 3.3E+02 0.011 26.1 13.6 15 235-249 467-481 (602)
174 3htk_A Structural maintenance 33.4 1E+02 0.0035 20.2 8.0 50 101-150 7-56 (60)
175 2oqq_A Transcription factor HY 32.9 96 0.0033 19.8 5.7 32 184-215 6-37 (42)
176 3f31_A Spectrin alpha chain, b 32.9 1.6E+02 0.0056 22.5 9.9 89 129-218 48-140 (149)
177 1gmj_A ATPase inhibitor; coile 32.7 1.4E+02 0.0049 21.7 9.0 28 174-201 51-78 (84)
178 1ses_A Seryl-tRNA synthetase; 32.7 2.5E+02 0.0086 25.8 9.9 18 131-148 39-56 (421)
179 1kd8_A GABH AIV, GCN4 acid bas 32.5 84 0.0029 19.4 4.3 23 172-194 6-28 (36)
180 2c5k_T Syntaxin TLG1, T-snare 32.4 1.5E+02 0.0051 21.8 7.2 51 99-152 6-61 (95)
181 2ic9_A Nucleocapsid protein; h 32.3 1.6E+02 0.0054 22.1 8.8 22 195-216 52-73 (96)
182 3ck6_A Putative membrane trans 32.3 1.6E+02 0.0055 24.3 7.9 6 47-52 106-111 (252)
183 1t72_A Phosphate transport sys 32.1 2E+02 0.0068 23.1 13.4 45 77-121 18-62 (227)
184 2f1m_A Acriflavine resistance 31.7 2.2E+02 0.0076 23.6 10.0 10 132-141 58-67 (277)
185 1nov_D Nodamura virus coat pro 31.5 32 0.0011 22.1 2.4 28 77-105 2-29 (44)
186 3uun_A Dystrophin; triple heli 31.3 1.4E+02 0.0048 21.1 15.2 62 157-218 33-101 (119)
187 3c9i_A Tail needle protein GP2 31.2 2.5E+02 0.0085 24.0 11.2 42 175-216 106-147 (242)
188 1jcd_A Major outer membrane li 31.1 1.2E+02 0.004 20.2 7.9 26 191-216 7-32 (52)
189 1nkp_A C-MYC, MYC proto-oncoge 30.7 1.2E+02 0.0043 21.8 6.0 18 189-206 67-84 (88)
190 3q8t_A Beclin-1; autophagy, AT 30.5 1.6E+02 0.0055 21.6 15.4 35 112-146 10-44 (96)
191 1t2k_D Cyclic-AMP-dependent tr 30.5 1.2E+02 0.0041 20.1 8.3 33 183-215 24-56 (61)
192 3u0c_A Invasin IPAB, 62 kDa an 30.4 2.3E+02 0.008 23.4 9.3 16 80-96 52-67 (201)
193 1jnm_A Proto-oncogene C-JUN; B 30.3 1.2E+02 0.0042 20.2 6.0 27 186-212 27-53 (62)
194 2z2q_B Coat protein gamma; wil 30.2 34 0.0012 22.0 2.4 28 77-105 2-29 (44)
195 4fla_A Regulation of nuclear P 30.0 2.1E+02 0.0072 22.8 10.7 38 178-215 90-127 (152)
196 1vcs_A Vesicle transport throu 30.0 1.7E+02 0.0057 21.6 7.4 24 199-222 71-94 (102)
197 3q8t_A Beclin-1; autophagy, AT 29.9 1.7E+02 0.0057 21.5 14.8 43 104-146 9-51 (96)
198 1nlw_A MAD protein, MAX dimeri 29.7 1.5E+02 0.0051 21.0 6.4 13 142-154 15-27 (80)
199 4emc_A Monopolin complex subun 29.2 1.2E+02 0.0043 25.3 6.3 28 177-204 30-57 (190)
200 1x79_B RAB GTPase binding effe 29.1 1.9E+02 0.0066 22.1 11.1 20 116-135 16-35 (112)
201 1xwm_A PHOU, phosphate uptake 29.0 2E+02 0.0067 23.1 7.7 24 143-166 23-46 (217)
202 1wle_A Seryl-tRNA synthetase; 28.8 3.8E+02 0.013 25.4 10.7 34 124-157 74-107 (501)
203 3d5a_X RF1, peptide chain rele 28.6 2.4E+02 0.0081 25.8 8.7 25 158-182 67-91 (354)
204 3uul_A Utrophin; spectrin repe 28.4 1.6E+02 0.0055 20.9 15.3 83 136-218 7-101 (118)
205 3u06_A Protein claret segregat 28.3 1.4E+02 0.0049 27.6 7.3 24 180-203 9-32 (412)
206 3bas_A Myosin heavy chain, str 28.2 1.7E+02 0.0057 21.1 9.7 38 172-209 47-84 (89)
207 3jsv_C NF-kappa-B essential mo 28.1 1.9E+02 0.0064 21.6 10.6 37 172-208 45-81 (94)
208 3mtu_E Head morphogenesis prot 27.9 1.7E+02 0.0058 21.0 6.9 39 175-213 31-69 (77)
209 1dip_A Delta-sleep-inducing pe 27.8 70 0.0024 23.0 3.9 31 187-217 14-44 (78)
210 3ra3_A P1C; coiled coil domain 27.8 63 0.0022 18.4 2.9 14 200-213 12-25 (28)
211 4aq4_A SN-glycerol-3-phosphate 27.7 1.5E+02 0.0052 25.5 7.1 48 74-121 369-416 (419)
212 1lwu_B Fibrinogen beta chain; 27.2 1.1E+02 0.0038 27.5 6.2 25 182-206 29-53 (323)
213 2gkw_A TNF receptor-associated 27.2 1.1E+02 0.0037 24.8 5.7 31 178-208 4-34 (192)
214 3hhm_B NISH2 P85alpha; PI3KCA, 26.9 3.6E+02 0.012 24.5 15.2 15 79-93 77-91 (373)
215 1nkp_A C-MYC, MYC proto-oncoge 26.9 1.6E+02 0.0054 21.2 6.0 38 163-200 48-85 (88)
216 3ljm_A Coil Ser L9C; de novo d 26.6 1E+02 0.0034 17.9 4.5 21 186-206 6-26 (31)
217 1vp7_A Exodeoxyribonuclease VI 26.4 1.6E+02 0.0054 22.1 6.0 46 102-147 37-85 (100)
218 2wuj_A Septum site-determining 26.4 1.1E+02 0.0037 20.3 4.6 8 196-203 42-49 (57)
219 2w6a_A ARF GTPase-activating p 26.3 1.6E+02 0.0055 20.2 8.6 46 170-215 16-61 (63)
220 2w83_C C-JUN-amino-terminal ki 26.3 1.4E+02 0.0047 21.5 5.3 40 166-205 36-75 (77)
221 4ev6_A Magnesium transport pro 26.2 3.3E+02 0.011 23.8 9.6 12 41-52 116-127 (339)
222 1f5n_A Interferon-induced guan 26.0 4.5E+02 0.016 25.4 11.6 9 101-109 458-466 (592)
223 3e35_A Uncharacterized protein 25.6 1.4E+02 0.0046 26.9 6.5 28 136-163 236-263 (325)
224 3ibp_A Chromosome partition pr 25.5 3.6E+02 0.012 24.1 12.5 40 108-147 5-44 (302)
225 2j69_A Bacterial dynamin-like 25.4 4.8E+02 0.016 25.4 12.1 17 200-216 674-690 (695)
226 1gs9_A Apolipoprotein E, APOE4 25.1 2.7E+02 0.0091 22.4 8.2 30 76-105 23-52 (165)
227 2aze_B Transcription factor E2 25.1 1.4E+02 0.0047 22.5 5.4 36 174-209 6-41 (106)
228 3t97_C Nuclear pore glycoprote 25.0 1.7E+02 0.0058 20.1 6.0 44 105-148 4-47 (64)
229 2v66_B Nuclear distribution pr 24.9 2.3E+02 0.0079 21.6 14.8 23 130-152 6-28 (111)
230 4gkw_A Spindle assembly abnorm 24.8 2.6E+02 0.009 22.2 16.8 122 92-213 4-137 (167)
231 3kin_B Kinesin heavy chain; mo 24.6 1.1E+02 0.0039 23.2 5.0 20 187-206 95-114 (117)
232 4h22_A Leucine-rich repeat fli 24.5 2.3E+02 0.0079 21.4 10.1 42 175-216 31-72 (103)
233 1g8x_A Myosin II heavy chain f 24.4 2.9E+02 0.0099 28.6 9.4 93 101-193 853-953 (1010)
234 1x8y_A Lamin A/C; structural p 24.2 2E+02 0.0068 20.6 8.4 19 166-184 62-80 (86)
235 1use_A VAsp, vasodilator-stimu 24.2 1.5E+02 0.0051 19.2 5.0 29 101-129 10-38 (45)
236 3gp4_A Transcriptional regulat 24.2 2.5E+02 0.0084 21.7 7.8 29 180-208 87-115 (142)
237 2b5u_A Colicin E3; high resolu 23.8 5E+02 0.017 25.0 17.5 28 99-126 314-341 (551)
238 3swk_A Vimentin; cytoskeleton, 23.7 2.1E+02 0.007 20.6 11.8 34 108-141 2-35 (86)
239 4akv_A Sorting nexin-33; trans 23.5 4.1E+02 0.014 24.0 11.0 15 172-186 332-346 (386)
240 3mkq_A Coatomer beta'-subunit; 23.4 3.5E+02 0.012 25.3 9.3 33 143-175 681-713 (814)
241 1fmh_A General control protein 23.2 1.2E+02 0.0042 17.8 4.8 28 115-142 3-30 (33)
242 3jsv_C NF-kappa-B essential mo 23.2 2.3E+02 0.008 21.0 8.1 42 174-215 40-81 (94)
243 3rki_A Fusion glycoprotein F0; 22.9 2E+02 0.0067 27.7 7.1 104 102-213 77-192 (528)
244 2xz3_A Maltose ABC transporter 22.9 2.5E+02 0.0085 25.4 7.9 47 172-218 377-423 (463)
245 3t97_B Nuclear pore complex pr 22.8 2E+02 0.0067 20.0 9.1 39 180-218 9-47 (65)
246 3dyt_A Sorting nexin-9; 3-heli 22.7 3.5E+02 0.012 24.1 8.8 27 172-198 312-339 (366)
247 3gpv_A Transcriptional regulat 22.6 1.4E+02 0.005 23.1 5.4 28 180-207 101-128 (148)
248 3rrk_A V-type ATPase 116 kDa s 22.6 1.9E+02 0.0066 25.3 6.9 40 176-215 94-136 (357)
249 2avr_X Adhesion A; antiparalle 22.2 2.8E+02 0.0094 21.5 15.0 29 122-150 4-32 (119)
250 3q0w_A HTH-type transcriptiona 22.2 1.6E+02 0.0054 23.3 5.8 57 61-117 78-136 (236)
251 3g1o_A Transcriptional regulat 22.1 1.4E+02 0.0046 24.1 5.4 57 61-117 77-135 (255)
252 2p4v_A Transcription elongatio 21.7 2.9E+02 0.01 21.8 7.2 29 130-158 12-41 (158)
253 4abm_A Charged multivesicular 21.7 2.2E+02 0.0075 20.2 8.6 9 158-166 32-40 (79)
254 3abd_X REV3, HREV3, DNA polyme 21.5 28 0.00096 22.9 0.8 11 40-50 23-33 (52)
255 3q4f_C DNA repair protein XRCC 21.5 2.1E+02 0.0072 23.8 6.2 42 94-135 142-183 (186)
256 3lay_A Zinc resistance-associa 21.4 3.3E+02 0.011 22.1 9.6 10 202-211 120-129 (175)
257 1go4_E MAD1 (mitotic arrest de 21.2 2.1E+02 0.0071 21.5 5.7 24 178-201 16-39 (100)
258 2ke4_A CDC42-interacting prote 21.1 2.6E+02 0.0087 20.7 7.5 50 168-217 16-77 (98)
259 3he4_B Synzip5; heterodimeric 21.1 1.6E+02 0.0056 18.4 4.5 26 190-215 5-30 (46)
260 3q0x_A Centriole protein; cent 21.0 3.9E+02 0.013 22.8 9.0 28 183-210 180-207 (228)
261 2f23_A Anti-cleavage anti-GREA 21.0 3E+02 0.01 21.5 8.0 29 130-158 13-41 (156)
262 2yfa_A MCPS, methyl-accepting 21.0 3.4E+02 0.011 22.0 21.8 23 79-101 54-76 (258)
263 3c9i_A Tail needle protein GP2 21.0 3.9E+02 0.013 22.8 13.7 52 170-221 80-131 (242)
264 2wt7_A Proto-oncogene protein 21.0 2E+02 0.0067 19.3 8.6 24 179-202 28-51 (63)
265 1xwm_A PHOU, phosphate uptake 20.9 3.2E+02 0.011 21.8 10.2 43 78-120 15-57 (217)
266 1z0k_B FYVE-finger-containing 20.8 1.9E+02 0.0064 20.3 5.0 20 189-208 47-66 (69)
267 2vgq_A Maltose-binding peripla 20.8 1.2E+02 0.0041 27.6 5.2 39 79-117 351-389 (477)
268 2zqm_A Prefoldin beta subunit 20.6 2.5E+02 0.0085 20.4 12.6 32 179-210 75-106 (117)
269 2jsw_A Talin-1; C-terminal act 20.4 91 0.0031 26.1 3.9 34 94-127 2-35 (189)
270 3lay_A Zinc resistance-associa 20.4 3.5E+02 0.012 22.0 10.6 14 192-205 117-130 (175)
271 1avy_A Fibritin, gpwac M; bact 20.4 2.4E+02 0.0081 20.0 6.0 31 177-207 11-41 (74)
272 2wuj_A Septum site-determining 20.3 1.6E+02 0.0053 19.5 4.4 24 179-202 32-55 (57)
273 3swy_A Cyclic nucleotide-gated 20.3 1.8E+02 0.0063 18.7 7.4 21 173-193 4-24 (46)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.53 E-value=0.0082 Score=56.38 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
-+..+.+++...+..++..-.||+..|+.+..++++.|.+.+... +..--...++++++++++...+.+.+|-.|=.
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH-- 425 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence 356778888888899988888999999999999999998886655 77778889999999999999999999987621
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
....=..+++. ...+.+..+++|+..+.+++.+|++++.+.+.+
T Consensus 426 ------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 426 ------TVMALMASLDA-------EKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp ------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222333 333333455555555555555555555554444
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.23 E-value=0.0062 Score=44.89 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 119 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 119 r~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~L 193 (251)
+.++..+......++.+...++..++.-...|+..+ .++-.-|..||.+|+.||.+++.+..++.+++.++..+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666677788888888888888889999988 56678999999999999999999999999999888765
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.89 E-value=0.18 Score=44.04 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--H---HHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA--R---EALKRRKSYADNA 176 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA--r---eAL~rk~~~e~~~ 176 (251)
.-|+..+..+++.+..++..+..+-...++++..+++....+.+++.+-.. +...+|=-| + .+-.++..+++.+
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777777777777777777777777777776643 333333111 1 1223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCCCchhHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ--SAKFVFPLSLLEFPVFSASATSLVLLV 246 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~--~AkAq~~vn~~l~~~~~~~a~~~f~~~ 246 (251)
..+...++..+..++.++..+..++..+.+.+.+++.-.+... .+....+-.....++ ..+.+..|+.+
T Consensus 114 le~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i-~~~lL~~Yeri 184 (256)
T 3na7_A 114 ENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT-EPKIYSFYERI 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 4444455555555555555555555555554444444443322 222223333444455 34666666654
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.78 E-value=0.14 Score=40.59 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~--AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
-+-.+..+++.+.+++..+.......+.++.++..+.....++..+... ..-..-++.-.....++.+++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999998888887665443 22233366667778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.++..+.....|...-+.++..+.+++...+.+-
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888764
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.31 E-value=0.49 Score=41.28 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=47.4
Q ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 88 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 88 a~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
..++.-++.++.-..-+...|.++++.+..++..+..+......++.++..++..+++...+....
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665555567777788888888888888888888888888877777777777766654
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.85 E-value=0.16 Score=48.68 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 111 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 111 me~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
+++++.+.+..+..+.....+.+..+...+.+++++....
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4446666666666666666666666666666666554443
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.40 E-value=0.34 Score=46.29 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
+.+..++.+...+++++..+++.++++..++..+.++.+++++...+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33334444444444444444555555555555444444444443333
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=95.03 E-value=0.28 Score=40.76 Aligned_cols=58 Identities=22% Similarity=0.456 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED----LAREALKRRK 170 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed----LAreAL~rk~ 170 (251)
||...|+...+.++.... .+++++..++.+-.+.......|.++|+.+ +|++++..+.
T Consensus 7 ~p~e~lr~~~~~L~~~~r--------------~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk 68 (179)
T 2gd5_A 7 PPKELVNEWSLKIRKEMR--------------VVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRK 68 (179)
T ss_dssp -CCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 565555555555444444 444455555555556666667888899998 5555555543
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.94 E-value=0.91 Score=52.62 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
.+++++...++.+...+..+.++.+++.+|+.+++++..+++.|+...+.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555556666666555556555555443
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.28 E-value=1.8 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
-+-.+..+++++.+++..+.......+.++.++..+.....++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999998888888888777
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.26 E-value=0.62 Score=49.07 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
.++++++.+.+.+..+..+......++.++..++.+..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666555555555555555555555555544
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.17 E-value=3.2 Score=48.29 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 025526 110 EMNDDLVKMR 119 (251)
Q Consensus 110 eme~~L~kar 119 (251)
+|+.+|...+
T Consensus 1938 ~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1938 DLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 13
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=92.46 E-value=3.1 Score=32.48 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
|+..+.=-+....++...++.+.......+.++..+.....++..+.......|=. ......+..-+..|...+
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I 83 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIA------SNRWINYQQFIQTLEKAI 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGG------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHH
Confidence 34444455667778888888888888888899999888888887655444333321 223344455555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
+.+...+..+...+......+.+...++..
T Consensus 84 ~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~ 113 (150)
T 3ajw_A 84 EQHRLQLTQWTQKVDLALKSWREKKQRLQA 113 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555555555444433
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.33 E-value=0.85 Score=48.02 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 116 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
.+.+..+.........++..+.+++.+...++.+.
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.72 E-value=4.7 Score=32.98 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=25.0
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
|+++|+-....+..|.+++++|..+...+-.+-........+-+.++.++..+..+.
T Consensus 30 LEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL 86 (155)
T 2efr_A 30 LERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444333
No 16
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=91.69 E-value=4.1 Score=35.05 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025526 128 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 168 (251)
Q Consensus 128 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 168 (251)
..+.|++++..++.+-.+.......|.++|+.+-||-....
T Consensus 22 ~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAke 62 (218)
T 3frt_A 22 EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567777777777788888889999999999887765444
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.63 E-value=6.8 Score=41.06 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA 150 (251)
.++.++..+++++++.++..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 18
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=91.32 E-value=3.9 Score=38.11 Aligned_cols=68 Identities=6% Similarity=0.117 Sum_probs=56.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 025526 96 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 163 (251)
Q Consensus 96 k~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (251)
.+.|=+..+.|+..|++..+.-++..+-..+.+-+.|+.-++.+..+++++|..+..+...=.-..++
T Consensus 103 q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~ 170 (390)
T 1deq_A 103 KANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSR 170 (390)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 33456788899999999999999999999999999999999999999999999996666554444443
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.96 E-value=4.7 Score=37.37 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (251)
..+...+-.|+..|+.-..+ -...++++|..|.++..++..+.|.....
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 421 ATANHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666677776655444 23588888888888888888877766544
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.90 E-value=4.6 Score=31.33 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 181 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ 181 (251)
.+.+.+|.+++.+|..+...-+++..+...+....++++.+ -+.- +..+...+..+..+++
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K-------yE~E------------~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK-------LQEE------------MLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHH------------HHHHHHHHHHHHHhhh
Confidence 56777888888888777776666666555555555544433 2221 1223444555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.+| ...-.-..|+.+++.++.++.-|+.-
T Consensus 77 ~lD-------~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 77 DVD-------NASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 44444455556666666666666544
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.80 E-value=6.7 Score=33.09 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
.-...+.+..+...+..+++.|..+
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444333
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.70 E-value=3 Score=40.41 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALKAQ 182 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~l~~q 182 (251)
|+..=+|+..-|.++|..+.++....+..+.-+ +...+.|.++...+- +++. ...+.. +++.++..|+..
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~--dNdN----tynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSAN--NRDN----TYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHH--HHHH----HHHHTTHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhh--ccch----hHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666644444444443 333444444444443 2221 222222 455666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
++.+-..+..|+..|+.+..+|+.++.-++
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666554443
No 23
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.43 E-value=11 Score=36.02 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 145 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~ 145 (251)
-++..|.+|++.+.++......+.-..+.+...++..+.++.+
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 3555666666666666554444333333444444444443333
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.31 E-value=7 Score=32.43 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
|-...|+-.+.|+.+.|..=-.+.++..-....+...+..++..+.++..+.
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~ 57 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERN 57 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555566665554444444444444444444444444444444443
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.12 E-value=12 Score=34.78 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
+...++.-......++.++..+...+....+.+...+..+.+-+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 33334444455666667777777777777777777776655544
No 26
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=89.91 E-value=4.7 Score=30.63 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 142 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 142 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
.+.+.-.+|+.|+..++-+.||..+ +...+..++..-+......++.++.++..+..|+..|-+
T Consensus 33 ~A~dKl~~A~~Am~~~~y~~Ar~lA-EqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 33 LAQDKYAAAQIAMTAESYKKARLLA-EQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445557899999999999999764 556777778888888888888888888888887776643
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.62 E-value=7.9 Score=37.52 Aligned_cols=94 Identities=10% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 183 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql 183 (251)
|...|.||+++|.+..+.-..+-..-+.+-..+........+.++ ....=-++|- .++..++..+...-.++
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN----tynE~S~ELR----RrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN----TYNRVSEDLR----SRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH----HHHHTTHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 555555666666666555555544444444444333333333333 1121122233 33344444444444666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~ 205 (251)
..++..|+.+..++++||.-|.
T Consensus 134 rvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777775554
No 28
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=89.60 E-value=12 Score=35.94 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 189 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~ 189 (251)
+.+..|..-+.+++++...-..++..|+...++.+.-. .++++.+|.+-+.-...++.|++.++.+++.++.....
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n----~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN----AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776665555555544443332211 12444555555555566677777777777777666555
Q ss_pred HHHHHHHHH
Q 025526 190 VNNLVSNTR 198 (251)
Q Consensus 190 v~~Lk~~l~ 198 (251)
..+....+.
T Consensus 82 ~AeY~~kl~ 90 (497)
T 3iox_A 82 LADYPVKLK 90 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 29
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.90 E-value=8.1 Score=36.25 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
...-....+++..|+..+...+..+..|+..+..++.+|++++.+...|..
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445566677777777777777777777777777777777777766653
No 30
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.53 E-value=6.3 Score=29.52 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
.+..++..+....+.|..+|..+-.. .+.+-.+....+..+..++.-+...+..++.....+.....++.+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~-----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEAD-----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777765222 2233333333344444444444444444444444444444444333
No 31
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.42 E-value=7.7 Score=30.35 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 130 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 130 k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
..|++++.+.++-..+|+.+|-.+=+. ...=+.+++..-..-+.++..++..+..|+..|+....+++.++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqT--------V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHT--------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666555544211 111111111111111333445555555555555555555555555
Q ss_pred HHHHHHHHH
Q 025526 210 KKDTLKARA 218 (251)
Q Consensus 210 k~~~LkAr~ 218 (251)
.-..+..|.
T Consensus 100 ~~~~~~~r~ 108 (121)
T 3mq7_A 100 ENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHH
T ss_pred hchhhhhHh
Confidence 555555554
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.15 E-value=6.9 Score=29.47 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
.++.++..+....+.|..+|..+-. -.+.+-.+....+..+..|+.-+..++..++.+...+.....++.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~-----~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEA-----DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777766522 1223333333334444444444444444444444444444433333
No 33
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.74 E-value=8.1 Score=29.86 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLEN 134 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~ 134 (251)
.|.++...|..+...++.-+..-..++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ 52 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKE 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666654443333333
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.72 E-value=20 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=15.1
Q ss_pred eeccccccCCCCccc-ccCCCcccccCch
Q 025526 51 VTRLRIAPSSRSHCY-RQGGGALNTRMNL 78 (251)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~M~i 78 (251)
+||-|+.--..+.|. .--|+|.+.-||.
T Consensus 18 ~RGpR~vE~~~s~Ck~~d~~~C~DeDwG~ 46 (390)
T 1deq_A 18 VRGPRLVERQQSACKETGWPFCSDEDWNT 46 (390)
T ss_pred CCCCchhhhhccccCCCCCCCCchhhccC
Confidence 344444443444444 2356777777766
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.32 E-value=16 Score=33.81 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 025526 78 LFDRLARV 85 (251)
Q Consensus 78 if~Rl~~l 85 (251)
+..|+..+
T Consensus 303 ~~~~l~~~ 310 (487)
T 3oja_A 303 FADRLIAL 310 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33555444
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.23 E-value=10 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.++++..+..|.+.+......+++|+.....+..+|...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 56777788888888888888888888888877777776544
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.12 E-value=4.8 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 107 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 107 ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
.+.+.++.+.+.+..+..+......++.++..+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666666666666666555
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.91 E-value=13 Score=29.56 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHhh
Q 025526 77 NLFDRLARVVKSYANAIL 94 (251)
Q Consensus 77 ~if~Rl~~lira~in~~l 94 (251)
.-+.++...|-..+.++-
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666655555554
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.85 E-value=17 Score=30.67 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLEN 134 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~ 134 (251)
..++.+.+.+++..+..-...-+.+|.
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ 45 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEA 45 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 40
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=84.29 E-value=24 Score=33.56 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD--NANALKA 181 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~--~~~~l~~ 181 (251)
++.-|.+|++.|.++......+....+.++..+...+.....- ..++++ -+..|++...+++ .......
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n----~~~~~~-----s~~mle~~~~~~~~~~~~~~~~ 163 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN----ENVVNE-----YSSELEKHQLYIDETVNSNIPT 163 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH----HHTTSC-----HHHHHHHHHTHHHHHHHTHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcc----hhHHHH-----HHHHHHHHHHHHHhhhhccchh
Confidence 4555666677666666666655555555555555544444332 122221 1234444444444 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
.+..++..++.+...+..|+..|..
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444433
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.15 E-value=9.1 Score=28.05 Aligned_cols=67 Identities=13% Similarity=0.286 Sum_probs=55.2
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025526 86 VKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 156 (251)
Q Consensus 86 ira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 156 (251)
+.+.|..++ |-+..|...|.++++.-..+.+....+...+..+.++...+..+...|+.+...-|.+
T Consensus 11 LE~KIq~av----dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 11 LEAKVQQAI----DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555444 4467788899999999999999999999999999999999999999999998876543
No 42
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=83.43 E-value=18 Score=33.92 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
..++..+..+..++..|+..+.....+|.+++.+...|..
T Consensus 94 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 94 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555543
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.11 E-value=9.2 Score=25.67 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLS 228 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn 228 (251)
++..|..+++++...|+.|..++..++..++ .|+..+++|-+++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~---------~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ---------AAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhh
Confidence 3444444455555555555554444444333 55556666655543
No 44
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.97 E-value=1.8 Score=42.27 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHh
Q 025526 78 LFDRLARVVKSYANAI 93 (251)
Q Consensus 78 if~Rl~~lira~in~~ 93 (251)
+-+.|+.++.++..=.
T Consensus 276 ~ak~i~~lc~~~H~ff 291 (575)
T 2i1j_A 276 VNKRILALCMGNHELY 291 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3577888888875533
No 45
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.06 E-value=23 Score=28.87 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
+|.+.-.+..-| ++.+|..+..-+...-+....++..+......+..++.....+ -.+...|+.++.
T Consensus 14 e~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seeka------------sqrEd~yEeqIk 80 (155)
T 2efr_A 14 SKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKY------------SQKEDKYEEEIK 80 (155)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHH------------HHHHHHHHHHHH
Confidence 444444444444 5555555555555555555555555555555555555444444 344555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
.|...+..++...+.....+..|+..|..+..++..
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555545555554444444444443
No 46
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.80 E-value=15 Score=26.78 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 117 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 196 (251)
Q Consensus 117 kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~ 196 (251)
+.|..+-.+..+.-+++-+++.++..++++..+-+.- +..+...|..+..+++.++.+.-.-
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E------------~~~R~~~E~d~~~LrkdvD~a~l~r------ 65 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE------------MLQREEAENTLQSFRQDVDNASLAR------ 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHTTHHHHHHHH------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 4444455555566666667777777777776665432 2233455555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 197 TRLLESKIQEARSKKDTL 214 (251)
Q Consensus 197 l~~Le~ki~e~k~k~~~L 214 (251)
..|+.+++.++.++.-|
T Consensus 66 -~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 -LDLERKVESLQEEIAFL 82 (86)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 47
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.76 E-value=10 Score=25.30 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
+.+...++.+++.+...-.+|...+++...+|..++.+.+.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777788888888888888888888888887777654
No 48
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.64 E-value=17 Score=34.01 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
+..+.++..++..+...+.++..++..+..+..++..|+.+|.++..
T Consensus 87 kkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 87 KKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666654
No 49
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.51 E-value=23 Score=28.50 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 191 (251)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~ 191 (251)
...|..+....-..-...+.++.+-......+..++.+...|. ..|.++-.+.......+..++..++..+...+
T Consensus 23 ~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-----~~aeeadrKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 23 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-----HIAEDADRKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555577788888888888888888888775 35666666677777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
.....+..|+..|..+-.....|-+..
T Consensus 98 ~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 888888888777777777666666543
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.51 E-value=22 Score=28.29 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMN--DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179 (251)
Q Consensus 102 ~mLdQ~Ireme--~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 179 (251)
..+|.-|+++. +.....-..-..+++. -.+-.++-..+...+.++..... .-.+..++...+..+
T Consensus 35 ~~vd~km~ei~~~~~~~~l~~~r~aVLaA-LNiadEl~k~~~~~~~L~~~l~~------------~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 35 SYINNKITEFNKEESYRRMSAELRTDMMY-LNIADDYFKAKKMADSLSLDIEN------------KDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 55666666666 3355555555555553 23333444444444444332221 122233333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
+..++.+.+.+++++..+..|+.++.++..+
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.22 E-value=15 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 132 LENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 132 le~k~~~~~~~~~~~e~rA~~A 153 (251)
+..++..+....+.|..++..+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~ 25 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQA 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655
No 52
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.12 E-value=20 Score=27.63 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
.-|.-.|..++..+...|.-.-.-++.+..+|..+..+
T Consensus 37 a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~l 74 (119)
T 3ol1_A 37 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 74 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555444444444444333333
No 53
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=78.83 E-value=10 Score=27.37 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
+++++..|+..+.=++..++.|..-+.+-...|..++.+...|.-|...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666655444
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.88 E-value=20 Score=26.52 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
+...-.-+|.-+-..+.||.+=..++.++..|..+-.. .-..-|+..+..++.+++.....-..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--------------RLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888888888888888777754211 1112366667777777777666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 025526 195 SNTRLLESKIQEARSK 210 (251)
Q Consensus 195 ~~l~~Le~ki~e~k~k 210 (251)
..+..|...+.+++.|
T Consensus 77 ~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666654
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.22 E-value=11 Score=27.00 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
+++..+..-..++.+.+..++.++..+.+.+..|++++.+.+-+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555566666666666666666666665544
No 56
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=74.90 E-value=9.7 Score=34.62 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
..+.+++..++..+..++.++..|+..+..++.+|.+++.+...|..+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666667777777777777776666666543
No 57
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=74.36 E-value=43 Score=29.03 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-------------EEDLAREALKRRKSYADN 175 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G-------------~EdLAreAL~rk~~~e~~ 175 (251)
.++++.+.++..............+.+|...-.+++....+...+-..+ -+.+..++-.-+.+|...
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 218 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777666554442111 122334455556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLE-SKIQEARSKKDTLKARA------QSAKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le-~ki~e~k~k~~~LkAr~------~~AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
+..+...........-.+-..++.++ .+|.-++.-+..+..-. ...+.-..+...+..++...-+..|..
T Consensus 219 v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~~Di~~fi~ 295 (312)
T 3abh_A 219 LKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRA 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSTTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 77777776666666666666666666 45666666555444332 233344557777788888887777764
No 58
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=74.12 E-value=14 Score=34.24 Aligned_cols=97 Identities=14% Similarity=0.262 Sum_probs=38.1
Q ss_pred ccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQA-VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 74 ~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~-Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
.+|+|+.++..+ ...+.++-..+.||...=|+. .+. +.+-...+..++.....++..++++ +.--++
T Consensus 11 ~~~~~~~~l~~~-~~r~~el~~~l~~p~~~~d~~~~~~----~~ke~~~l~~~v~~~~~~~~~~~d~-------~~~~el 78 (371)
T 1zbt_A 11 HHMNIYDQLQAV-EDRYEELGELLSDPDVVSDTKRFME----LSREEANSRETVAVYREYKQVVQNI-------ADAQEM 78 (371)
T ss_dssp CCCCHHHHHHHH-HHHHHHC------------------------CCHHHHHHHHHHHHHHHHHHHHH-------HHHHHC
T ss_pred hhhhHHhhHHHH-HHHHHHHHHHhcCCcchhCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 579999999864 468888888888996555531 111 2222222333333333333333322 222222
Q ss_pred HHh-cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 153 ALQ-KGEEDLAREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 153 AL~-~G~EdLAreAL~rk~~~e~~~~~l~~q 182 (251)
+-. .+|+++...+-.+...++.+++.++..
T Consensus 79 ~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~ 109 (371)
T 1zbt_A 79 IKDASGDPELEEMAKEELKNSKVAKEEYEEK 109 (371)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 357777777755555555555554443
No 59
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=73.89 E-value=26 Score=26.31 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADN------ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 163 reAL~rk~~~e~~------~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
|++|.+....-.+ ...++.++......++.|+.++.+++.-+.++..
T Consensus 38 regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 38 REALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666665554322 2223566666777777777777777766666643
No 60
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.87 E-value=47 Score=31.71 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.++.-++..++.+-..+.-|+..|+.+..+|+.++
T Consensus 117 e~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 117 RRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555554444444
No 61
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.03 E-value=32 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 140 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~~~~ 140 (251)
|...+|...++.-..+....+.++.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667666666666666666666655
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.18 E-value=76 Score=30.16 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
..|+..+.++.+....+.+-+-.+....+..+.++.+....+.++...
T Consensus 103 qeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~ 150 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTE 150 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 335555555555555555555555555555555565555555555533
No 63
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=69.53 E-value=36 Score=26.09 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----------------------------
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE----------------------------- 159 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E----------------------------- 159 (251)
+++...+.+.+..+..+..+...++..+.++....+..+.--. ..|.+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~---~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG---KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence 4445555555555555566666666666665555555543110 12221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 160 ------DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 160 ------dLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
|=|.+.+ +.++..++..++..+..+..++.++..+...|+++..
T Consensus 81 ~vE~~~~eA~~~l------~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 81 AIKKNFEDAMESI------KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EEEEEHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344443 4445566666666666666666666666666666543
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.00 E-value=9.8 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLE 201 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le 201 (251)
.....|+..+..|.
T Consensus 50 ~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 50 LENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.00 E-value=11 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
++.|+....+|+.|+.+++.+.+.|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333333
No 66
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.53 E-value=20 Score=32.60 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
.+.++..++..+.....++..++..++.++.++.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555544
No 67
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.28 E-value=41 Score=32.14 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 129 QKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 129 ~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
++.+..++++++++.+...+..-.+...|+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344444444444554444444444444554
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=66.89 E-value=14 Score=32.29 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLAS 128 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~ 128 (251)
+..+.+.+.++..++..+..+.+.
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~ 91 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444333
No 69
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.19 E-value=35 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
-.+..+++.+...+..|+..++++..+++.++.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444433
No 70
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=66.03 E-value=63 Score=27.61 Aligned_cols=81 Identities=7% Similarity=-0.043 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhCCCCch
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE-SKIQEARSKKDTLKARA------QSAKFVFPLSLLEFPVFSA 237 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le-~ki~e~k~k~~~LkAr~------~~AkAq~~vn~~l~~~~~~ 237 (251)
+-.-+.+|...+..+...........-.+-..++.++ .+|.-++.-...+.--. ...+....+..++.+++..
T Consensus 186 ~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~id~~ 265 (290)
T 3i2w_A 186 VQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNADQQ 265 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhcChH
Confidence 4444566776677666666666666666656666555 44455554444443222 1234556677778888888
Q ss_pred hHHHHHHH
Q 025526 238 SATSLVLL 245 (251)
Q Consensus 238 ~a~~~f~~ 245 (251)
.-+.-|..
T Consensus 266 ~Di~~fi~ 273 (290)
T 3i2w_A 266 KDLKWWSN 273 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777754
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=66.03 E-value=9 Score=33.96 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=12.5
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQ 124 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~ 124 (251)
|=.++++. ++..+...+.++..++..+..
T Consensus 60 L~~ld~~~--~~~~l~~~~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 60 LAEIDSTT--QINTLNTRKAALASYQAQLVA 88 (369)
T ss_dssp CEECCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33444553 333344444444444444333
No 72
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.89 E-value=32 Score=25.30 Aligned_cols=27 Identities=7% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+++.....++.+...+...+.+|.+++
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444
No 73
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=65.56 E-value=55 Score=27.46 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.||+-++++ -|.++.|.++... ..++.-..+++..++++......++..|+-+-|...+.+..-+..-..
T Consensus 129 ~d~~fLme~--me~~E~le~~~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~ 198 (207)
T 3bvo_A 129 MDRQFLIEI--MEINEKLAEAESE--------AAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEE 198 (207)
T ss_dssp SCHHHHHHH--HHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH--HHHHHHHHHccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 366654443 3455555554421 124444455566667777777888889999999888888776655544
Q ss_pred HHH
Q 025526 178 ALK 180 (251)
Q Consensus 178 ~l~ 180 (251)
.++
T Consensus 199 ~i~ 201 (207)
T 3bvo_A 199 KIK 201 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 74
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.31 E-value=14 Score=35.85 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
++-++.++++..+++.++.+..-....|+.+...++.+...++.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~ 388 (575)
T 2i1j_A 341 QDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 75
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.04 E-value=91 Score=29.16 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA----REALKRRKSYADNANAL 179 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA----reAL~rk~~~e~~~~~l 179 (251)
++.-|.+|++.|.++......+....+.++..+...+. ...++++.+ +..++++..++..+...
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~------------~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDES------------SKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTC------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccC------------CCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455556655555555444444333333333222221 122333333 34688888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
..++..++..+......+..|+.++..+..+
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887765
No 76
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=64.35 E-value=48 Score=27.19 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.||+-+++++ |.+++|.++... ..++.-..+....+..+......++..++-+-|+..+.+..-+..-..
T Consensus 99 ~d~~fLme~m--e~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 99 SDPQLLLKVL--DIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAK 168 (181)
T ss_dssp TCHHHHHHHH--HHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3666555543 555566655321 223444456777888888889999999999999988888766665544
Q ss_pred HH
Q 025526 178 AL 179 (251)
Q Consensus 178 ~l 179 (251)
.+
T Consensus 169 ~i 170 (181)
T 3uo3_A 169 AF 170 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 77
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.83 E-value=49 Score=25.62 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVS 195 (251)
Q Consensus 182 ql~~~~~~v~~Lk~ 195 (251)
.+...+..+.+++.
T Consensus 85 ~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 85 MIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 78
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.76 E-value=40 Score=24.53 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
+..+++.++.+++.+..+++++...+..++.+-.++-..++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555554444444444433
No 79
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.71 E-value=56 Score=30.74 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 125 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 125 v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
+=..++.+..++++++++.+...++...+...|+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344555555566666666666665555545554
No 80
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.37 E-value=25 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
-.++.++.|-..+..+...++.|+..++.|..++.++.
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555666666666666666666655555544
No 81
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=62.02 E-value=37 Score=28.25 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=38.4
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~ 143 (251)
|.+++||..++.+.|...+..+.+.+..+......-...+.++..+....
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998888888887777766666666666555544
No 82
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.31 E-value=25 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.+++....+...+.+|.+++.++..|.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555554443
No 83
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=61.30 E-value=38 Score=25.92 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
+..+++++.+...++..|...+..++..+..++.+|+-+-.+.+--.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777778888888888888888888888887776655544
No 84
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.81 E-value=11 Score=33.14 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
..+..++.+++.+..+.+.|+..++.++.+|..++.+.+.|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777777777777777777777777776664
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.45 E-value=57 Score=25.28 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 149 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~r 149 (251)
+.+|++.-++++.--.+...-....-....+++.++.+++.+.+.....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556555555554444444444444444555666666666665555444
No 86
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.34 E-value=40 Score=23.46 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
++.+.......+...+..+.++...|+.+..+++.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333334444444444444444333
No 87
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=59.97 E-value=1.1e+02 Score=28.49 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHH---H-------HHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK---GEEDLAR---E-------ALKRRKSYADN 175 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~---G~EdLAr---e-------AL~rk~~~e~~ 175 (251)
.++++...++.+.+..........+.+|...-.+.+....+...|-.. ...++-+ . +-.-+.+|...
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 211 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 211 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777777777776666666665555555211 1122211 1 11112333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLE-SKIQEARSKKDTLKARA------QSAKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le-~ki~e~k~k~~~LkAr~------~~AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
+..+.............+-..++.++ .+|.-++.-+..+..-. ...+..+.+...+..++...-+.-|..
T Consensus 212 v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l~~~~~~~~~~~~e~l~~~i~~id~~~Di~~Fi~ 288 (486)
T 3haj_A 212 LKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRA 288 (486)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333333333333333333444443 33344433333322221 233445566677777777777776653
No 88
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=59.21 E-value=13 Score=32.53 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKRLENKCK 137 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~le~k~~ 137 (251)
+++.++.+++..+..+.+.....+.+++
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~ 93 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELK 93 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677666666665555444444433
No 89
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=59.16 E-value=28 Score=27.23 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 132 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 184 (251)
Q Consensus 132 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~ 184 (251)
+..++..+....+....+--.|...||.++..+...++..+..+++.++....
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888899999998888888887777777777766543
No 90
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=59.12 E-value=42 Score=29.45 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQ------KRLE------NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 169 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~------k~le------~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk 169 (251)
.+|...+..++.++...+..+..++..- ..++ +++.+...++....+-.. =+=..|||+|.-.|.++
T Consensus 130 a~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~le-elLddDeDm~~myLT~k 208 (261)
T 3rkg_A 130 SIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLD-ELLENDDDLANMYLTVK 208 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHhhccCC
Confidence 5555555555555555555444433211 1222 223333333333322222 24567899999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
.......++++--++..-.+++.+...+..|...|...+.
T Consensus 209 ~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe 248 (261)
T 3rkg_A 209 KSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEE 248 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544455555555555555555555555555555554443
No 91
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.91 E-value=60 Score=25.01 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 165 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 165 AL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
+-..+.++..++..|..++...+..+..|+..+.+++....+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777777777666666666666665554443
No 92
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.69 E-value=23 Score=23.59 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~k 203 (251)
++.|+.+.+.++..++.|+..+.+++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 93
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.02 E-value=10 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 112 NDDLVKMRQATAQVLASQKRLEN 134 (251)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~ 134 (251)
++.|..++..++......+.++.
T Consensus 7 Ed~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 7 EEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 94
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=57.78 E-value=96 Score=27.03 Aligned_cols=137 Identities=8% Similarity=0.001 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG-------------EEDLAREALKRRKSYADN 175 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G-------------~EdLAreAL~rk~~~e~~ 175 (251)
.++++.+.++.+.+..........+..|...-.+.+.-+.+...+-..+ -+.+.+++-.-+.+|...
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 209 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKV 209 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777766666554443333331111 011222222333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLE-SKIQEARSKKDTLKARA------QSAKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le-~ki~e~k~k~~~LkAr~------~~AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
+..+...........-.+-..++.++ .+|.-++.-...+..-. .....-..+...+..++...-+..|..
T Consensus 210 v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~~Di~~fi~ 286 (337)
T 2x3v_A 210 LEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQEDLRWFRS 286 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSTHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 44444443334444444444444444 34555554444443321 233344566667777777777777754
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.48 E-value=23 Score=25.02 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
..+..|+.++..++.....+......|...+..+..+...|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444455555555555555555555555555555554443
No 96
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=57.17 E-value=6.7 Score=35.62 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
|.+...+|.++..++.++..++..++.++.++.+|+.+|.++
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555444444444444444444444443333
No 97
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.08 E-value=33 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRL 199 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~ 199 (251)
+..+..++.++++.+..+.+|+..+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444444443
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.03 E-value=87 Score=29.87 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 155 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 155 (251)
+..+.|+-.|++..+.-++.-+...+.+-+.|+.-++.+..+++++|...-..++
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555444443
No 99
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.82 E-value=84 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Q 025526 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKAR--AQSAKFVFPLSLLE 231 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr--~~~AkAq~~vn~~l 231 (251)
+......|.-.+..++.++..++.+-+.|..| ...++.-.++|...
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444555555555555555555555555 33344444555544
No 100
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=53.52 E-value=72 Score=24.33 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 135 KCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 135 k~~~~~~~~~~~e~rA~~AL 154 (251)
.++++++++...|.+...|-
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iAr 55 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTAR 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 101
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=53.40 E-value=1.4e+02 Score=27.72 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~ 121 (251)
-+..+.+.+...+..++..-.||+..|+++..++++.+.+....
T Consensus 335 ~~~~i~~~l~~~l~~vl~G~~tpeeAl~~~~~~~~~~l~~~~~~ 378 (494)
T 1y4c_A 335 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNN 378 (494)
T ss_dssp THHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 35667777777788888777789888888877777666655444
No 102
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=52.80 E-value=1.5e+02 Score=27.65 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL-QKGEEDLAREALKRRKSYADNANAL 179 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL-~~G~EdLAreAL~rk~~~e~~~~~l 179 (251)
.+|.-.+.|.+..|.++. .++.--..+.++++-+++.... -|-.+- +|- --|-|+|-+.+|...+.+..++.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (494)
T 1y4c_A 390 ELLKIALQEAQKTLQQAQ-ELAKKGGGEEQLKRALKRADRN--LWAAQE-LAKKGGGGEELLKQALQQAQQLLRQAQEL 464 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSCCHHHHHHHHHHHHHH--HHHHHH-HHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHccCcHHHHHHHHHhhhhh--hHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665553 3444444445555555544332 233221 222 2235667777766655555555444
No 103
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=52.43 E-value=48 Score=27.71 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=42.1
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~ 144 (251)
|+++.||..++..+|.=+-+.+...+....+...+-.+|.++.++..++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 557789999999999988888888888888888888888888777766654
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.10 E-value=47 Score=22.65 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
.+..|+..-..|+.+|..++.+...
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 105
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=51.88 E-value=1.2e+02 Score=26.57 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----HH----------HHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-----ED----------LAREALKRRKSYA 173 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~-----Ed----------LAreAL~rk~~~e 173 (251)
.++++.+.++...+..........+.+|...-.+.+..+.+...+ .++ .+ +..++-.-+.+|.
T Consensus 139 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~--~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~ 216 (350)
T 3aco_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS--KADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYE 216 (350)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTS--SSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555554444332211 111 11 1112222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLE-SKIQEARSKKDTLKAR------AQSAKFVFPLSLLEFPVFSASATSLVLL 245 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le-~ki~e~k~k~~~LkAr------~~~AkAq~~vn~~l~~~~~~~a~~~f~~ 245 (251)
..+..+..........+..+-..++.++ .+|.-++.-...+..- ......-+.+...+..++...-+..|..
T Consensus 217 ~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~id~~~Di~~fi~ 295 (350)
T 3aco_A 217 KSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRA 295 (350)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4444444444444444444444444554 3445555444443322 1233344457777778888777777754
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=51.63 E-value=38 Score=25.10 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
.|+.+...+..+++.|+.....+...+..++.+.+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433
No 107
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=51.05 E-value=96 Score=25.00 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 97 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 97 ~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
..||+-+++++ +.++.|.+++.. .....++.-..+....+..+......++..++-+-|...+.+..-+..-.
T Consensus 86 ~~d~~fLme~m--e~rE~lee~~~~-----~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~ 158 (171)
T 1fpo_A 86 VRDTAFLMEQL--ELREELDEIEQA-----KDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLR 158 (171)
T ss_dssp CSCHHHHHHHH--HHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH--HHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Confidence 34787665543 455556555432 11223445556666777777888888999999988888887765554433
No 108
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.90 E-value=59 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+...+..-...+...+..|.++++....|.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444443
No 109
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.66 E-value=31 Score=21.53 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+++.+.++..++.++..++.++..|-
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888887777653
No 110
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.52 E-value=99 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 110 EMNDDLVKMRQATAQVLASQKR 131 (251)
Q Consensus 110 eme~~L~kar~~lA~v~A~~k~ 131 (251)
++++.|..+|..+.......+.
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~ 38 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIEN 38 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665544444333
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.06 E-value=1.1e+02 Score=25.24 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+.+++.++..|...++.......++...-+.|..+|..+.-++..+.
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555556666666666666666665555566666655555544443
No 112
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.98 E-value=46 Score=24.70 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~ 205 (251)
.+|.....+..+++.+......+...+..++.+++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 113
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=49.30 E-value=1.2e+02 Score=25.65 Aligned_cols=59 Identities=8% Similarity=-0.076 Sum_probs=36.8
Q ss_pred cccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 95 SSFEDPEKI----LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 95 Dk~EDP~~m----LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
+.+.+|... .++.-....+...++.+.+..+.......+.+|...-.+.+....+...|
T Consensus 94 ~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a 156 (301)
T 2efk_A 94 VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERL 156 (301)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566432 23333445566667777777777777777777777777776666665554
No 114
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=49.10 E-value=95 Score=24.37 Aligned_cols=120 Identities=6% Similarity=0.011 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 178 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 178 (251)
+...-|.+-..++.+...+-+..|-... .-.++.+..++....+.+-+.-+... .-++-.-....+.+.+.++..+..
T Consensus 29 ~r~~~l~~rw~~L~~~a~~R~~~Le~s~-~lq~F~~d~~el~~Wi~ek~~~a~~~-~~~d~~~v~~ll~kH~afe~El~a 106 (161)
T 3lbx_A 29 ERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDK-SYEDPTNIQGKYQKHQSLEAEVQT 106 (161)
T ss_dssp GHHHHGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555 34567777777777777655433221 225666677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVS----NTRLLESKIQEARSKKDTLKARAQS 220 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~----~l~~Le~ki~e~k~k~~~LkAr~~~ 220 (251)
.+..++.+...-.+|.. .-..++.++.++..+-+.|......
T Consensus 107 ~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~ 152 (161)
T 3lbx_A 107 KSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLE 152 (161)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777732 2345667777777777777655443
No 115
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.92 E-value=74 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
++.|+..-..+....+.++.....+..+++.++.++.
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.82 E-value=59 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
....++..++.++..-..|+..+..|+..+..++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555543
No 117
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=48.60 E-value=1.1e+02 Score=24.78 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 176 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~-~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 176 (251)
.||+-+++++ |.++.|.++... .. ...++.=..+....+..+......++..|+-+-|...+.+..-+..-.
T Consensus 90 ~d~~fLme~m--e~rE~le~~~~~-----~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~ 162 (174)
T 3hho_A 90 QDPMFLMEQM--ELREELESVTAC-----ADPEAALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLK 162 (174)
T ss_dssp CCHHHHHHHH--HHHHHHHHHTSS-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3665555433 455555554321 00 222344445666777778888888999999998988877766555443
Q ss_pred HHHH
Q 025526 177 NALK 180 (251)
Q Consensus 177 ~~l~ 180 (251)
..++
T Consensus 163 ~~i~ 166 (174)
T 3hho_A 163 NEVE 166 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 118
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=47.68 E-value=12 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+.+..|+..+..++.++..|+..+..++.+|.+++.+...|..+
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888888888888777777666543
No 119
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=47.57 E-value=1.1e+02 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYR 148 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~ 148 (251)
.+..+++++.....+|-+
T Consensus 72 ~l~~~veeA~~~L~eYn~ 89 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNG 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 120
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.57 E-value=67 Score=29.63 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
.++..++.+....+..+.+++..+.+++.++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 121
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.33 E-value=95 Score=23.88 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 164 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 164 eAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+..++.++..++..-...+...+.....|...-..|+.+|.++..+.+...
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555554444433
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.21 E-value=61 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
++..++.++..-..|...+..|+..+..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 123
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.06 E-value=22 Score=31.36 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCK 137 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~ 137 (251)
||...||- .+.+.++.+++..++.+.+.....+.+++
T Consensus 58 q~L~~ld~--~~~~~~l~~~~a~l~~~~a~l~~a~~~~~ 94 (369)
T 4dk0_A 58 DLLAEIDS--TTQINTLNTRKAALASYQAQLVARKTAYD 94 (369)
T ss_dssp CCCEECCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 45666677776666665554444444333
No 124
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=46.73 E-value=1.3e+02 Score=25.35 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=37.9
Q ss_pred cccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 95 SSFEDPEKIL----EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 95 Dk~EDP~~mL----dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL 154 (251)
+.+.+|...+ ++......+...++.+.+..........+..|...-.+.++...+...|-
T Consensus 101 ~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~ 164 (305)
T 2efl_A 101 SQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMD 164 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554222 23333455666677777777777777777888877777777776665553
No 125
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.92 E-value=38 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
++.....+++..++.+..|+..+++|+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 126
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.32 E-value=33 Score=21.88 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
...|+..++.++.|+..++.+...|
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666665544
No 127
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.29 E-value=65 Score=21.15 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
++..+......+.........++..+..+...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~ 48 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDE 48 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 128
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=44.02 E-value=1.1e+02 Score=27.87 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 152 LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 197 (251)
Q Consensus 152 ~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l 197 (251)
..++++.+++..++-.-.+..++.+..|+.+++.+.+.+-+=+..|
T Consensus 371 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 371 ALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3344444444445555555566666677777766666665544444
No 129
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=43.72 E-value=27 Score=31.64 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 025526 201 ESKIQEA 207 (251)
Q Consensus 201 e~ki~e~ 207 (251)
+.||..+
T Consensus 41 ~~KI~~L 47 (323)
T 1lwu_B 41 RAKMQRM 47 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 130
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=43.72 E-value=75 Score=24.95 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~rA~~A 153 (251)
-++.++.+++..+..++..+...
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~ 32 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEI 32 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666554443
No 131
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.49 E-value=1.9e+02 Score=27.52 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
...++..+..++.++.++..++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444443
No 132
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.26 E-value=96 Score=22.76 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~ 205 (251)
++.++..++.++..+...+..++..+..++.++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 133
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.17 E-value=65 Score=24.55 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+..+..++.+++..+..+..++..++.++.+++.-++.+.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666555554
No 134
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=42.89 E-value=64 Score=27.14 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=4.0
Q ss_pred hcccCCHH
Q 025526 94 LSSFEDPE 101 (251)
Q Consensus 94 lDk~EDP~ 101 (251)
|=.+++|+
T Consensus 50 L~~ld~~~ 57 (277)
T 2f1m_A 50 LYQIDPAT 57 (277)
T ss_dssp SEEECCHH
T ss_pred EEEECcHH
Confidence 33455654
No 135
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.84 E-value=1.2e+02 Score=23.72 Aligned_cols=42 Identities=5% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 025526 106 QAVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWY 147 (251)
Q Consensus 106 Q~Ireme~~L~kar~~lA~v~A~~k~l---e~k~~~~~~~~~~~e 147 (251)
+.+..+.+.+.+.+..+..+......+ +.++.++...++.++
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666 777777777666654
No 136
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=42.80 E-value=1.1e+02 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 195 SNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~LkA 216 (251)
..+..++.||.++++.+....+
T Consensus 69 ~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666555554
No 137
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.68 E-value=93 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
+.+.+...+..++.+...-++|+.--.+++.-|.+++++...+....
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni 62 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666665555554443
No 138
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.49 E-value=1.3e+02 Score=23.98 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 103 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 153 (251)
Q Consensus 103 mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~A 153 (251)
..-+-+.++.....+..+..-.+-.....-+.++..++.+...-...|..|
T Consensus 21 ~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeea 71 (147)
T 2b9c_A 21 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 71 (147)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444
No 139
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.41 E-value=68 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 193 LVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 193 Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
|+...+.|+.+..++..+..+|.
T Consensus 8 LE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 140
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=41.27 E-value=1.3e+02 Score=24.66 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 025526 137 KAAEQASEDWYRKAQLALQKGEEDLAREAL 166 (251)
Q Consensus 137 ~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 166 (251)
...-..+.+.-..|..|+..++.++|.++.
T Consensus 17 ~~M~~~v~~~l~~a~~al~~~d~~~a~~V~ 46 (235)
T 1sum_B 17 LKAGWFIEKMFRNSISSLVERNESLAREVI 46 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 333334444444445555555555444443
No 141
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=40.87 E-value=1.4e+02 Score=23.96 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 025526 139 AEQASEDWYRKAQLALQKGEEDLAREAL 166 (251)
Q Consensus 139 ~~~~~~~~e~rA~~AL~~G~EdLAreAL 166 (251)
.-..+.+.-..|..|+..++.++|+++.
T Consensus 19 M~~~v~~~l~~a~~al~~~d~~~a~~v~ 46 (216)
T 2i0m_A 19 LGQLVLETASKALLALASKDKEMAELII 46 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3333444444444555555554444443
No 142
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.06 E-value=1.2e+02 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQL-DQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 171 ~~e~~~~~l~~ql-~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
..+..++.|..+| +++...|..-+.....++.+...++
T Consensus 51 ~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 51 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 3333333333333333333333333
No 143
>3m6j_A Uncharacterized protein; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; 1.90A {Leptospirillum rubarum}
Probab=39.63 E-value=89 Score=25.01 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=28.7
Q ss_pred CCcccccCCCcccccCchHHHHHHHHHHHHHHhhcccCC--HHHHH
Q 025526 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFED--PEKIL 104 (251)
Q Consensus 61 ~~~~~~~~~~~~~~~M~if~Rl~~lira~in~~lDk~ED--P~~mL 104 (251)
+-+|++-|-+.... |...+|++.|++---.-+++..-| |.+.|
T Consensus 74 d~~~~~~~~~~iE~-la~~~~lr~iv~~~~~~~v~~y~~~~~~~al 118 (145)
T 3m6j_A 74 DAQPAHAGSGKIET-ISECDRLKNLVRNVTDTLVENYPQGLESEAL 118 (145)
T ss_dssp -------CCSSCCS-HHHHHHHHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred ccccccCCchHHHH-HHHHHHHHHHHHhhHHHHHhcCCCccHHHHH
Confidence 44566666666555 899999999999988889998887 54433
No 144
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.38 E-value=77 Score=20.57 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
++..+..++..+.-+..-+|+.+++....+.++++--..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888877777776654433
No 145
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=39.17 E-value=64 Score=25.44 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
++....+++|.+.+++++.++++++.+....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665443
No 146
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=39.14 E-value=63 Score=26.04 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKFVFPLSL 229 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~AkAq~~vn~ 229 (251)
......++..+.....++..++.++.++..|.+...--..+.+|.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIse 114 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISD 114 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 4444455555555555666666666666556555444444444443
No 147
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.06 E-value=1.1e+02 Score=23.05 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 113 DDLVKMRQATAQVLASQKRLENKCKAAEQAS 143 (251)
Q Consensus 113 ~~L~kar~~lA~v~A~~k~le~k~~~~~~~~ 143 (251)
+++..++..+...-.+..++.++.+.++.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556555555555555555555544444
No 148
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=38.82 E-value=1.3e+02 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 025526 149 KAQLALQKGEEDLAREALKRR 169 (251)
Q Consensus 149 rA~~AL~~G~EdLAreAL~rk 169 (251)
.|..+....-||+-+.++.++
T Consensus 60 dAe~~~E~DPDevNK~tl~~R 80 (107)
T 2k48_A 60 DAEKAVEVDPDDVNKSTLQNR 80 (107)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHH
Confidence 355667788888888876664
No 149
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.22 E-value=79 Score=22.83 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~L 193 (251)
-..++.++..++.+++.....-+.+
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444333333
No 150
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=38.13 E-value=75 Score=27.51 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 169 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 169 k~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
..+.|+++..++..+++..+.+......+..++.+++++..
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655556666655555544
No 151
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.05 E-value=2.8e+02 Score=26.59 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 143 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 143 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
+..-.+++..+.++-+..+.-+-..-+++.++--..+++.+++..+.+++.+.++.+-+.++...+..+..+
T Consensus 28 aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 28 AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554444443333333444444455666666666666666666555555555555444433
No 152
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.77 E-value=1.6e+02 Score=23.79 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 122 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
++.-.+.+..+|.++.++-........ ++ +...-....+.+..++.++...+..+..++..++.-.
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~--------~~------~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~ 95 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIG--------GN------IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKN 95 (152)
T ss_dssp -----------------------------------CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCC--------cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666555431111 10 1111122233444455555555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 202 SKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 202 ~ki~e~k~k~~~LkAr~~~A 221 (251)
.-++.++.+...|..+.+.+
T Consensus 96 K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 153
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=37.72 E-value=86 Score=20.60 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
+.++..|+..++.+...|..|+....+++..|..+++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5566777777777777777777777777766655543
No 154
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.63 E-value=86 Score=20.63 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKN 188 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~ 188 (251)
-.+..+..|+..+|.++.
T Consensus 9 fAERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 155
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.00 E-value=1e+02 Score=21.61 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 025526 164 EALKRRKSYA 173 (251)
Q Consensus 164 eAL~rk~~~e 173 (251)
.|..-+..++
T Consensus 44 ~Ai~YI~~L~ 53 (83)
T 1nkp_B 44 KATEYIQYMR 53 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.65 E-value=48 Score=22.35 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 025526 191 NNLVSNT 197 (251)
Q Consensus 191 ~~Lk~~l 197 (251)
..|...+
T Consensus 39 ~~L~~~v 45 (62)
T 1jnm_A 39 SELASTA 45 (62)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 157
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.43 E-value=79 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
++.|..+.+.+...+..+.....+++.++.++.
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 158
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.07 E-value=1.2e+02 Score=21.70 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 139 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~ 139 (251)
++..+..|+..+.-+..-+|+++++....+.++++-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqR 40 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQR 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888888888777777665555554443
No 159
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=35.91 E-value=1.3e+02 Score=22.25 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 132 LENKCKAAEQASEDWYRKAQLAL 154 (251)
Q Consensus 132 le~k~~~~~~~~~~~e~rA~~AL 154 (251)
++++++.+..++..+-...+.-|
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~L 70 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKL 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 160
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.66 E-value=1.5e+02 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 123 AQVLASQKRLENKCKAAEQASE 144 (251)
Q Consensus 123 A~v~A~~k~le~k~~~~~~~~~ 144 (251)
+.++..-..++.+|..+...-+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~ 26 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEE 26 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544433
No 161
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=35.52 E-value=2e+02 Score=24.30 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 025526 98 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 177 (251)
Q Consensus 98 EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 177 (251)
.||...+...=|.++....++.+.+.++-.+++.++.+++.+.+.-+.-- |+ -+|++++..++ +...+-
T Consensus 6 ~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~--ar--------ilAkelVR~Rk-~~~rl~ 74 (218)
T 3frt_A 6 KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV--CI--------VLAKEMIRSRK-AVSKLY 74 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HH--------HHHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HH--------HHHHHHHHHHH-HHHHHH
Confidence 47877777777777777777777777777778888877777666543311 11 37777765544 344445
Q ss_pred HHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVN 191 (251)
Q Consensus 178 ~l~~ql~~~~~~v~ 191 (251)
.++.+++.+.-++.
T Consensus 75 ~~kaqL~sV~~rlq 88 (218)
T 3frt_A 75 ASKAHMNSVLMGMK 88 (218)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 162
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.49 E-value=1.4e+02 Score=27.47 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 171 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 214 (251)
Q Consensus 171 ~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~L 214 (251)
.++++...++..+.+++.....+++.+.+.+.....+..+...|
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444444444444444444444444433
No 163
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.43 E-value=1.2e+02 Score=21.78 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
.++-..+.+.+..+..+......++.++.+...-.++++
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777777777777777666555544
No 164
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.41 E-value=1.4e+02 Score=22.38 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 025526 173 ADNANALKAQLD 184 (251)
Q Consensus 173 e~~~~~l~~ql~ 184 (251)
...+..|...++
T Consensus 45 NqTV~tL~~SL~ 56 (99)
T 3ni0_A 45 NLTVVTLQESLE 56 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333433333
No 165
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.99 E-value=1.3e+02 Score=21.74 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 188 NVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 188 ~~v~~Lk~~l~~Le~ki~e~k 208 (251)
..+..|..++..++.++.+++
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 166
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.87 E-value=1e+02 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.+++.++..++..+..+..++.++..++..++++.
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666555555554
No 167
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.83 E-value=55 Score=30.39 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 128 SQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 128 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
.++.+..++++++++.+...++...+...|
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~ 67 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREG 67 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444445555555555554444433444
No 168
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=34.56 E-value=42 Score=18.84 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 025526 140 EQASEDWYRKAQLALQKG 157 (251)
Q Consensus 140 ~~~~~~~e~rA~~AL~~G 157 (251)
+..+..|+++..-||+.|
T Consensus 9 rrriarwekriayalkng 26 (26)
T 1hji_B 9 RRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 457889999999998876
No 169
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.29 E-value=96 Score=21.82 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
.|......++.++.+++.+...|.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443333
No 170
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.78 E-value=1.4e+02 Score=21.84 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 109 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 109 reme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
.+.-..+...++.+..+......++.++.++..-.++++
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655554443
No 171
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=33.65 E-value=3.2e+02 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
+..+..|+..++.....+.+|+..+..++.
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444445555555555555554444443
No 172
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=33.64 E-value=1.5e+02 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
+.+...++..++.++..-..+.......-..+++|+.++..++.+-..|.-.
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544444555555665555555555444433
No 173
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=33.47 E-value=3.3e+02 Score=26.15 Aligned_cols=15 Identities=7% Similarity=-0.285 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHH
Q 025526 235 FSASATSLVLLVMVA 249 (251)
Q Consensus 235 ~~~~a~~~f~~~~~~ 249 (251)
+.++++..|+..+.-
T Consensus 467 SvDDALaSfEKyk~N 481 (602)
T 1cii_A 467 NVEEALKTYEKYRAD 481 (602)
T ss_dssp CHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHhcC
Confidence 367888888877643
No 174
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.36 E-value=1e+02 Score=20.17 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
..-++..+.++...+...+..+-.....-.++...+......+.+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888887654
No 175
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.88 E-value=96 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 184 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 184 ~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
..++..+..|.....+|+.++..+.++=.+|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555566666666666666666666655553
No 176
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=32.88 E-value=1.6e+02 Score=22.45 Aligned_cols=89 Identities=9% Similarity=0.128 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 025526 129 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN----TRLLESKI 204 (251)
Q Consensus 129 ~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~----l~~Le~ki 204 (251)
-.++.+..++....+.+-+.-+.. -.-||-.-....+.+.+.++..+...+..++.+...-..|... -..++.++
T Consensus 48 l~~F~~d~~el~~Wi~ek~~~~~~-~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl 126 (149)
T 3f31_A 48 FQFFQRDAEELEKWIQEKLQIASD-ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRL 126 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-CSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 345555555555555554443211 1224445566677777888888888888887777777666542 34566677
Q ss_pred HHHHHHHHHHHHHH
Q 025526 205 QEARSKKDTLKARA 218 (251)
Q Consensus 205 ~e~k~k~~~LkAr~ 218 (251)
.++..+=+.|....
T Consensus 127 ~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 127 MELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665543
No 177
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.72 E-value=1.4e+02 Score=21.73 Aligned_cols=28 Identities=4% Similarity=0.171 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
+++...+.+++.++..++..+..+..|+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443
No 178
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.72 E-value=2.5e+02 Score=25.84 Aligned_cols=18 Identities=6% Similarity=0.195 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 131 RLENKCKAAEQASEDWYR 148 (251)
Q Consensus 131 ~le~k~~~~~~~~~~~e~ 148 (251)
.+..++++++++.+...+
T Consensus 39 ~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 179
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.53 E-value=84 Score=19.36 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLV 194 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk 194 (251)
+++.++.+-..-..++..|..|+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333333333
No 180
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.40 E-value=1.5e+02 Score=21.79 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v-----~A~~k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
||= .+.-.|...+|..++.-+..- ....+.++.-+.+++..+.++.+-...
T Consensus 6 DPF---~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 6 DPF---QQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp CHH---HHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 662 333346666666666554320 122344455555555555555444433
No 181
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.31 E-value=1.6e+02 Score=22.06 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025526 195 SNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 195 ~~l~~Le~ki~e~k~k~~~LkA 216 (251)
..+..++.||.++++.+....+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666655555
No 182
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=32.29 E-value=1.6e+02 Score=24.33 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.4
Q ss_pred ceeEee
Q 025526 47 GALKVT 52 (251)
Q Consensus 47 ~~~~~~ 52 (251)
..+-|+
T Consensus 106 ~lITvr 111 (252)
T 3ck6_A 106 ALISTR 111 (252)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 344443
No 183
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=32.05 E-value=2e+02 Score=23.14 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~ 121 (251)
.-+.++..++...+..+++.+.+...-+-..|.+.++.+.+....
T Consensus 18 ~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~ 62 (227)
T 1t72_A 18 EQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVD 62 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHH
Confidence 356788888888888888877643222333444445555444444
No 184
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=31.69 E-value=2.2e+02 Score=23.62 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 025526 132 LENKCKAAEQ 141 (251)
Q Consensus 132 le~k~~~~~~ 141 (251)
++.++..++.
T Consensus 58 ~~~~l~~a~a 67 (277)
T 2f1m_A 58 YQATYDSAKG 67 (277)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 185
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=31.51 E-value=32 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILE 105 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLd 105 (251)
++|.|+++++++..+.+ .-+--|.-++.
T Consensus 2 ~mWErVk~ilks~l~~a-S~iPGPVG~~a 29 (44)
T 1nov_D 2 TFWERVRSILKSGLNFA-STIPGPVGVAA 29 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHH
Confidence 68999999999987754 44556654443
No 186
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=31.31 E-value=1.4e+02 Score=21.14 Aligned_cols=62 Identities=8% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 157 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS-------NTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 157 G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~-------~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
++.+-++..+.+...++..+...+..++.+......|-. ....++.++.++..+-+.|....
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 33 NDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888887777743 23456777777777777776553
No 187
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=31.21 E-value=2.5e+02 Score=24.00 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
.+..++-.+...+..+..|+.++..++.++.....+...|.+
T Consensus 106 ~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 106 AITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 344444444455555555555555555555555544444443
No 188
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.13 E-value=1.2e+02 Score=20.17 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 191 NNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 191 ~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
++|..++..|-.|+..+......++.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 189
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.69 E-value=1.2e+02 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e 206 (251)
..+.|+..-..|+.+|++
T Consensus 67 ~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 190
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.52 E-value=1.6e+02 Score=21.61 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 112 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 112 e~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
+..|.+++..-+.++..-..+++....+...+...
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 191
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.51 E-value=1.2e+02 Score=20.14 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+.++..++.|...-..|..+|..++.+...|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554443
No 192
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=30.39 E-value=2.3e+02 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q 025526 80 DRLARVVKSYANAILSS 96 (251)
Q Consensus 80 ~Rl~~lira~in~~lDk 96 (251)
.|+ +++-|++-.+++.
T Consensus 52 grL-TLLLGnL~~IlG~ 67 (201)
T 3u0c_A 52 SQL-TLLIGNLIQILGE 67 (201)
T ss_dssp HHH-HHHHHHHHHHHCS
T ss_pred hhH-HHHHHHHHHHhcc
Confidence 344 3444666666554
No 193
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.32 E-value=1.2e+02 Score=20.20 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQEARSKKD 212 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e~k~k~~ 212 (251)
++..++.|...-..|..++..++.+..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 194
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=30.21 E-value=34 Score=21.98 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHhhcccCCHHHHHH
Q 025526 77 NLFDRLARVVKSYANAILSSFEDPEKILE 105 (251)
Q Consensus 77 ~if~Rl~~lira~in~~lDk~EDP~~mLd 105 (251)
++|.|+++++++..+.+ .-+--|.-++.
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~a 29 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAA 29 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHH
Confidence 68999999999988764 44556654444
No 195
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.03 E-value=2.1e+02 Score=22.82 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.|+.+++.-.+.+..|.....-.+..+.+.+...+.++
T Consensus 90 rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK 127 (152)
T 4fla_A 90 RLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 196
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.97 E-value=1.7e+02 Score=21.59 Aligned_cols=24 Identities=4% Similarity=0.277 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 199 LLESKIQEARSKKDTLKARAQSAK 222 (251)
Q Consensus 199 ~Le~ki~e~k~k~~~LkAr~~~Ak 222 (251)
.+..|+++++..++.|+...+.++
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888887776655543
No 197
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.86 E-value=1.7e+02 Score=21.54 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 104 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 146 (251)
Q Consensus 104 LdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~ 146 (251)
++..++++..+-..+.+.+-.+..+...+...+..++.....+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 198
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.69 E-value=1.5e+02 Score=20.99 Aligned_cols=13 Identities=8% Similarity=-0.246 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 025526 142 ASEDWYRKAQLAL 154 (251)
Q Consensus 142 ~~~~~e~rA~~AL 154 (251)
.+..|-......+
T Consensus 15 ~lk~~f~~Lr~~v 27 (80)
T 1nlw_A 15 HLRLSLEKLKGLV 27 (80)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHc
Confidence 3444444444443
No 199
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.21 E-value=1.2e+02 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKI 204 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki 204 (251)
..|.++++.....+..|+.++..++.+.
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344444444444444444443333
No 200
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.06 E-value=1.9e+02 Score=22.09 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 116 VKMRQATAQVLASQKRLENK 135 (251)
Q Consensus 116 ~kar~~lA~v~A~~k~le~k 135 (251)
.+++..+.+..+.++.++..
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 201
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=29.02 E-value=2e+02 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 025526 143 SEDWYRKAQLALQKGEEDLAREAL 166 (251)
Q Consensus 143 ~~~~e~rA~~AL~~G~EdLAreAL 166 (251)
+.+.-..+..|+..+|.++|++..
T Consensus 23 v~~ml~~a~~al~~~d~~~a~~v~ 46 (217)
T 1xwm_A 23 TEVALQQAIEAFQTQNANLAMAVI 46 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 333334444444444444444443
No 202
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.81 E-value=3.8e+02 Score=25.39 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025526 124 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 157 (251)
Q Consensus 124 ~v~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 157 (251)
..-...+.+..++++++++.+...+....+..+|
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344455566666666666666666655544444
No 203
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.61 E-value=2.4e+02 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 158 EEDLAREALKRRKSYADNANALKAQ 182 (251)
Q Consensus 158 ~EdLAreAL~rk~~~e~~~~~l~~q 182 (251)
|+++...+-.+...++.+++.++..
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~ 91 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKE 91 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666655555555555443
No 204
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.38 E-value=1.6e+02 Score=20.88 Aligned_cols=83 Identities=11% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 025526 136 CKAAEQASEDWYRKAQLALQK-----GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS-------NTRLLESK 203 (251)
Q Consensus 136 ~~~~~~~~~~~e~rA~~AL~~-----G~EdLAreAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~-------~l~~Le~k 203 (251)
|...-.....|=..++..|.. ++-+-.+.-+.+.+.++..+...+..++.+......|-. ....++.+
T Consensus 7 f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~ 86 (118)
T 3uul_A 7 YQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQ 86 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 344444555566555555543 345777888888888888888888888888887777743 34457777
Q ss_pred HHHHHHHHHHHHHHH
Q 025526 204 IQEARSKKDTLKARA 218 (251)
Q Consensus 204 i~e~k~k~~~LkAr~ 218 (251)
+.++..+-+.|....
T Consensus 87 l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 87 MTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776543
No 205
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.34 E-value=1.4e+02 Score=27.56 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESK 203 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~k 203 (251)
+.+++.+.+..++++..+++++..
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~ 32 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAE 32 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 206
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.19 E-value=1.7e+02 Score=21.07 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
+......|..++..++...+.|...-..|+.+|.++..
T Consensus 47 l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 47 LLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 207
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.12 E-value=1.9e+02 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+..++..|+..-..-...-+++......|...+..++
T Consensus 45 Lk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 45 LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 208
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.93 E-value=1.7e+02 Score=21.03 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
-+.++...+-.+++.|+.|+..+...+.+...+....+.
T Consensus 31 ~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 31 ALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355667777778888888888887777777777666553
No 209
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.82 E-value=70 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 187 KNVVNNLVSNTRLLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr 217 (251)
.+.++-|++++.+|+.++.+++.+-..|+.-
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999988888887754
No 210
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.82 E-value=63 Score=18.38 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 025526 200 LESKIQEARSKKDT 213 (251)
Q Consensus 200 Le~ki~e~k~k~~~ 213 (251)
|+.||..+++|...
T Consensus 12 leqkiaalkqkias 25 (28)
T 3ra3_A 12 LEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 211
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=27.72 E-value=1.5e+02 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=37.9
Q ss_pred ccCchHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 025526 74 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 121 (251)
Q Consensus 74 ~~M~if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~~ 121 (251)
.....+..+.+++...+..++..-.+|+..|+++..++++.|.+..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~g~~t~e~al~~~~~~~~~~L~~y~k~ 416 (419)
T 4aq4_A 369 LRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKS 416 (419)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888889888899888888899998888888888777776543
No 212
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=27.23 E-value=1.1e+02 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 182 QLDQQKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 182 ql~~~~~~v~~Lk~~l~~Le~ki~e 206 (251)
++..++..+++|++++.+|+.++.+
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555544443
No 213
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.18 E-value=1.1e+02 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
.|++.+..+..++...+..+..++.+++++.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555554
No 214
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.88 E-value=3.6e+02 Score=24.50 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHh
Q 025526 79 FDRLARVVKSYANAI 93 (251)
Q Consensus 79 f~Rl~~lira~in~~ 93 (251)
|.-|.++|.-+.+..
T Consensus 77 F~SL~eLV~~Y~~~~ 91 (373)
T 3hhm_B 77 FSSVVELINHYRNES 91 (373)
T ss_dssp BSSSHHHHHHHHHSC
T ss_pred cCCHHHHHHHHhhCC
Confidence 555666666555444
No 215
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.88 E-value=1.6e+02 Score=21.18 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 163 REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 200 (251)
Q Consensus 163 reAL~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~L 200 (251)
+.|+.-+..++.+...+..+.+.+......|+..+..|
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555444
No 216
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.60 E-value=1e+02 Score=17.94 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 186 QKNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 186 ~~~~v~~Lk~~l~~Le~ki~e 206 (251)
++.....|+++++.|+.|++.
T Consensus 6 lekkcaalesklqalekklea 26 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 217
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.42 E-value=1.6e+02 Score=22.10 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 102 KILEQAVLEMND---DLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 102 ~mLdQ~Ireme~---~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
.-|++.++.++. .|.++-....+-+...+..+.+++.++.+++.+.
T Consensus 37 ~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 37 AELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444443 3444444445555666677777777777777774
No 218
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.37 E-value=1.1e+02 Score=20.32 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 025526 196 NTRLLESK 203 (251)
Q Consensus 196 ~l~~Le~k 203 (251)
....|+.+
T Consensus 42 e~~~L~~~ 49 (57)
T 2wuj_A 42 KKTELEAK 49 (57)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 219
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.34 E-value=1.6e+02 Score=20.21 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
.+...-+..-+.-+.++-+.-..|.+.++.|+.+|.++..+-..|+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3334444445555556666666677777777777777776655553
No 220
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.33 E-value=1.4e+02 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 205 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~ 205 (251)
+.+.-++-.+.+.++.++....+...+++..+.+++..+.
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666777777777777777777777777776554
No 221
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.17 E-value=3.3e+02 Score=23.79 Aligned_cols=12 Identities=8% Similarity=0.049 Sum_probs=5.0
Q ss_pred cccCccceeEee
Q 025526 41 FFNGGVGALKVT 52 (251)
Q Consensus 41 f~~~~~~~~~~~ 52 (251)
||=+.-..+-|+
T Consensus 116 i~l~~~~lITv~ 127 (339)
T 4ev6_A 116 IYIKNNLLLTIH 127 (339)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCeeEEee
Confidence 443333444444
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.03 E-value=4.5e+02 Score=25.36 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 025526 101 EKILEQAVL 109 (251)
Q Consensus 101 ~~mLdQ~Ir 109 (251)
+.+|..++.
T Consensus 458 ~~vl~~fl~ 466 (592)
T 1f5n_A 458 EEILQTYLK 466 (592)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 355555544
No 223
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=25.64 E-value=1.4e+02 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 025526 136 CKAAEQASEDWYRKAQLALQKGEEDLAR 163 (251)
Q Consensus 136 ~~~~~~~~~~~e~rA~~AL~~G~EdLAr 163 (251)
...+.+++++|+.+...-++.|+++++.
T Consensus 236 ~~~L~e~Ae~~e~~i~el~~~~~~E~~~ 263 (325)
T 3e35_A 236 AHSLRTDAHRTQTEIDRQIQEGDEELIA 263 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 6677777888888877777777776654
No 224
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=25.47 E-value=3.6e+02 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 147 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e 147 (251)
|.+++..+.+....-..+-....++..++.++...+-.|.
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~ 44 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWL 44 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 3455555555555555555566666666666666666664
No 225
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.40 E-value=4.8e+02 Score=25.41 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025526 200 LESKIQEARSKKDTLKA 216 (251)
Q Consensus 200 Le~ki~e~k~k~~~LkA 216 (251)
.-.++.+.+.+++.+.+
T Consensus 674 ~~~~~~~~~~~~~~~~~ 690 (695)
T 2j69_A 674 VIAQLQKIEAAYSNLLA 690 (695)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444555555555544
No 226
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.14 E-value=2.7e+02 Score=22.36 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCHHHHHH
Q 025526 76 MNLFDRLARVVKSYANAILSSFEDPEKILE 105 (251)
Q Consensus 76 M~if~Rl~~lira~in~~lDk~EDP~~mLd 105 (251)
-+=|..+.+.+.-+++.+=+.+.+-...|+
T Consensus 23 ~~~le~v~~~~w~Y~~q~~~~a~~~v~ql~ 52 (165)
T 1gs9_A 23 GQRWELALGRFWDYLRWVQTLSEQVQEELL 52 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 467888888888888888777666554444
No 227
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.05 E-value=1.4e+02 Score=22.48 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 209 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~ 209 (251)
.++..|+.+++.+......|...++.+...++.+..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777777777777777777666666666653
No 228
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.03 E-value=1.7e+02 Score=20.09 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 105 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 148 (251)
Q Consensus 105 dQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~~~~~e~ 148 (251)
|+.|.+=.+.|.+.-..+.++...+.++++.++-...+-.+++.
T Consensus 4 D~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 4 DRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888888777666555543
No 229
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.90 E-value=2.3e+02 Score=21.59 Aligned_cols=23 Identities=13% Similarity=0.110 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025526 130 KRLENKCKAAEQASEDWYRKAQL 152 (251)
Q Consensus 130 k~le~k~~~~~~~~~~~e~rA~~ 152 (251)
+.|..+...+..+++.|..+...
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665554
No 230
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.82 E-value=2.6e+02 Score=22.21 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHhcCCHHH
Q 025526 92 AILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE-------QASEDWYR---KAQLALQKGEEDL 161 (251)
Q Consensus 92 ~~lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~-------~~~~~~e~---rA~~AL~~G~EdL 161 (251)
.+.+.-+|-..-|++-+.++..++.+.+..+--+.---..-..+.++++ +++.++.. -++.-+++.+-+|
T Consensus 4 ~laE~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 4 MLVEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp ---CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555666667777777777776666654333222222222222222 22222211 1122244445566
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 162 AREALKRRKSYA--DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 162 AreAL~rk~~~e--~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
+|--.+.-+..- ..+..|++.+..-...|+.|...+-.|+..++.-+-|...
T Consensus 84 krn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E 137 (167)
T 4gkw_A 84 KRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAE 137 (167)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554433322 1234555555555556666666666555555554444433
No 231
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.57 E-value=1.1e+02 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 187 KNVVNNLVSNTRLLESKIQE 206 (251)
Q Consensus 187 ~~~v~~Lk~~l~~Le~ki~e 206 (251)
...+..|+..+..|+.++..
T Consensus 95 ~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 232
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.50 E-value=2.3e+02 Score=21.41 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 175 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 216 (251)
Q Consensus 175 ~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkA 216 (251)
+++-|+..++..++...+++..+++.-..++..+...+.|..
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433334434433333333
No 233
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=24.40 E-value=2.9e+02 Score=28.64 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC--HHHH-HHHH-HHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLE---NKCKAAEQASEDWYRKAQLALQKGE--EDLA-REAL-KRRKSYA 173 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le---~k~~~~~~~~~~~e~rA~~AL~~G~--EdLA-reAL-~rk~~~e 173 (251)
..-|++.-..++....+-.+.|-..+..+.+++ ++...-....+.|-...+..|..++ .||+ -+++ .+...++
T Consensus 853 ~~dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s~d~g~dL~~Vqal~KKhea~e 932 (1010)
T 1g8x_A 853 PNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 932 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSCCSCCSTTTTGGGTTSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 367888888888888888888888877777777 4455555555666666667776654 1222 2233 3334445
Q ss_pred HHHHHHHHHHH-HHHHHHHHH
Q 025526 174 DNANALKAQLD-QQKNVVNNL 193 (251)
Q Consensus 174 ~~~~~l~~ql~-~~~~~v~~L 193 (251)
..+..++..+. ++....++|
T Consensus 933 ~dl~a~e~ri~~~l~~~a~eL 953 (1010)
T 1g8x_A 933 GECQSLEGQSNSDLLSILAQL 953 (1010)
T ss_dssp TTTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444 344444444
No 234
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.24 E-value=2e+02 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025526 166 LKRRKSYADNANALKAQLD 184 (251)
Q Consensus 166 L~rk~~~e~~~~~l~~ql~ 184 (251)
+.-|..++..+..|..-++
T Consensus 62 lnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 62 LDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHc
Confidence 3333444444444444443
No 235
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.23 E-value=1.5e+02 Score=19.16 Aligned_cols=29 Identities=10% Similarity=0.368 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 101 EKILEQAVLEMNDDLVKMRQATAQVLASQ 129 (251)
Q Consensus 101 ~~mLdQ~Ireme~~L~kar~~lA~v~A~~ 129 (251)
+++=...+.||+.+|.+++..+-.++...
T Consensus 10 e~~KqEIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999998887654
No 236
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.21 E-value=2.5e+02 Score=21.66 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k 208 (251)
+.+++.+++++..|+..+..|+.++...+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
No 237
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.78 E-value=5e+02 Score=25.03 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 99 DPEKILEQAVLEMNDDLVKMRQATAQVL 126 (251)
Q Consensus 99 DP~~mLdQ~Ireme~~L~kar~~lA~v~ 126 (251)
.|+...+-.+..++.+|.++...+|+..
T Consensus 314 hp~~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 314 HPVEAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444443
No 238
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.69 E-value=2.1e+02 Score=20.56 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 108 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 141 (251)
Q Consensus 108 Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~ 141 (251)
|++++.++..+...-+++..+...+....+....
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655555444433
No 239
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=23.48 E-value=4.1e+02 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQ 186 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~ 186 (251)
++.-...++++++..
T Consensus 332 ~e~IS~~~~~El~rF 346 (386)
T 4akv_A 332 CRVVGFALQAEMNHF 346 (386)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.40 E-value=3.5e+02 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 025526 143 SEDWYRKAQLALQKGEEDLAREALKRRKSYADN 175 (251)
Q Consensus 143 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 175 (251)
-..|..-|+.|++.|+-++|..+..+-.++..-
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l 713 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESL 713 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhh
Confidence 468999999999999999999999987776653
No 241
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.21 E-value=1.2e+02 Score=17.79 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 115 LVKMRQATAQVLASQKRLENKCKAAEQA 142 (251)
Q Consensus 115 L~kar~~lA~v~A~~k~le~k~~~~~~~ 142 (251)
+.+..+.+|++.++--+++++..+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4566778888888888888888777654
No 242
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.19 E-value=2.3e+02 Score=21.02 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 174 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 174 ~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
++++.|++|++-+......=+..-.++..+++++..+...|.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555444554455454444444444443
No 243
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG; 3.20A {Human respiratory syncytial virus}
Probab=22.90 E-value=2e+02 Score=27.70 Aligned_cols=104 Identities=15% Similarity=0.219 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025526 102 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA------------SEDWYRKAQLALQKGEEDLAREALKRR 169 (251)
Q Consensus 102 ~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k~~~~~~~------------~~~~e~rA~~AL~~G~EdLAreAL~rk 169 (251)
+++.|.+.-....+.+.+.-.+...+.-.+.++.+-+.-.- ..++.+||+ +- |--||.+-
T Consensus 77 ~li~~el~~~~~a~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~rAQ--IT------AavAL~qA 148 (528)
T 3rki_A 77 KLIKQELDKYKNAVTELQLLMQSTPATNNRARRELPRFMNYTLNNAKKTNVTLSKKRKRRSA--IA------SGVAVSKV 148 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCC--------------------------------------C--CC------SSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccchhhhccchhhhhhcccchhhhhhhccchhHHHH--HH------HHHHHHHH
Confidence 56777777777777777766666666655555554443221 122222221 22 23577888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 213 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~ 213 (251)
.+.+..+..+++.+..-.+.+.++...+..+---+..++...+.
T Consensus 149 ~qNA~nIlrLKeSI~~TNeAV~elt~gls~lavAV~~lQd~IN~ 192 (528)
T 3rki_A 149 LHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK 192 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999998888888777777776554
No 244
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=22.85 E-value=2.5e+02 Score=25.42 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
.+.-+..++..++..++.|..|+.++..+-.-.-+-|+-++.|.++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRL 423 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHh
Confidence 45556677777777777777777777777777777777777777653
No 245
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.77 E-value=2e+02 Score=20.00 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 218 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~ 218 (251)
+.-++...+.+.+|+.+......||.+.++|..+|.=|.
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344566677777777777777788888888877776553
No 246
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=22.68 E-value=3.5e+02 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 025526 172 YADNANALKAQLDQQKNV-VNNLVSNTR 198 (251)
Q Consensus 172 ~e~~~~~l~~ql~~~~~~-v~~Lk~~l~ 198 (251)
++.-...++.+++....+ +..++..+.
T Consensus 312 ~e~is~~~~~El~rF~~~r~~Dfk~~l~ 339 (366)
T 3dyt_A 312 VSIMSYALQAEMNHFHSNRIYDYNSVIR 339 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332 334444333
No 247
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.63 E-value=1.4e+02 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 180 KAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 180 ~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
+.+++.+++++..|+..+..++.+|..+
T Consensus 101 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 101 KQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 248
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.61 E-value=1.9e+02 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 025526 176 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK---KDTLK 215 (251)
Q Consensus 176 ~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k---~~~Lk 215 (251)
...++..++.....+..+..++.+|++++.+++.. ++.|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
No 249
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.24 E-value=2.8e+02 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 122 TAQVLASQKRLENKCKAAEQASEDWYRKA 150 (251)
Q Consensus 122 lA~v~A~~k~le~k~~~~~~~~~~~e~rA 150 (251)
.+.|+..-+.||.+|..+...-+...++=
T Consensus 4 a~~V~s~l~~LEaeyq~L~~kE~qrynqe 32 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLANQEEARFNEE 32 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999888777665543
No 250
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.17 E-value=1.6e+02 Score=23.35 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCcccccCCCcccccCchHHHHHHHHHHHHHHhhcccC--CHHHHHHHHHHHHHHHHHH
Q 025526 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVK 117 (251)
Q Consensus 61 ~~~~~~~~~~~~~~~M~if~Rl~~lira~in~~lDk~E--DP~~mLdQ~Ireme~~L~k 117 (251)
++.=|+|=|+-.+...-++.+..+-+...+...++... ||...|...++.+-+.+.+
T Consensus 78 ~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 136 (236)
T 3q0w_A 78 RPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGS 136 (236)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHc
Confidence 44456666666666666777777777777777777666 7877777777666655544
No 251
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=22.13 E-value=1.4e+02 Score=24.11 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCcccccCCCcccccCchHHHHHHHHHHHHHHhhcccC--CHHHHHHHHHHHHHHHHHH
Q 025526 61 RSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFE--DPEKILEQAVLEMNDDLVK 117 (251)
Q Consensus 61 ~~~~~~~~~~~~~~~M~if~Rl~~lira~in~~lDk~E--DP~~mLdQ~Ireme~~L~k 117 (251)
++.=|+|=++-.+...-++.+..+-+...+...++... ||...|...++..-+.+.+
T Consensus 77 ~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (255)
T 3g1o_A 77 RPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGS 135 (255)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 44446676776676667778887777778777777766 8887777777766665544
No 252
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=21.71 E-value=2.9e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 025526 130 KRLENKCKAAEQ-ASEDWYRKAQLALQKGE 158 (251)
Q Consensus 130 k~le~k~~~~~~-~~~~~e~rA~~AL~~G~ 158 (251)
++|+.+++.+.. ...+.-+....|-..||
T Consensus 12 ~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GD 41 (158)
T 2p4v_A 12 EKLKQELNYLWREERPEVTKKVTWAASLGD 41 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 344444444422 33333344455556665
No 253
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=21.71 E-value=2.2e+02 Score=20.18 Aligned_cols=9 Identities=22% Similarity=0.028 Sum_probs=5.5
Q ss_pred CHHHHHHHH
Q 025526 158 EEDLAREAL 166 (251)
Q Consensus 158 ~EdLAreAL 166 (251)
...+||..+
T Consensus 32 e~~~Ak~~~ 40 (79)
T 4abm_A 32 ELTAAKKHG 40 (79)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 455666666
No 254
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=21.51 E-value=28 Score=22.90 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=3.7
Q ss_pred ccccCccceeE
Q 025526 40 SFFNGGVGALK 50 (251)
Q Consensus 40 ~f~~~~~~~~~ 50 (251)
+|-++++..||
T Consensus 23 ~~t~~~~~ILK 33 (52)
T 3abd_X 23 SFTPRTANILK 33 (52)
T ss_dssp -----CTTEEE
T ss_pred CCCCCcccccc
Confidence 44444466665
No 255
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.47 E-value=2.1e+02 Score=23.84 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=31.5
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A~~k~le~k 135 (251)
|.++.||..+++++|.-.-+.+.+.+.....+..+-.+|.++
T Consensus 142 L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 142 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557789999889999888888887777766666665555544
No 256
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.44 E-value=3.3e+02 Score=22.15 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 025526 202 SKIQEARSKK 211 (251)
Q Consensus 202 ~ki~e~k~k~ 211 (251)
.+|.+++.++
T Consensus 120 ~Ei~~Lr~qL 129 (175)
T 3lay_A 120 KEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 257
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.23 E-value=2.1e+02 Score=21.49 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 178 ALKAQLDQQKNVVNNLVSNTRLLE 201 (251)
Q Consensus 178 ~l~~ql~~~~~~v~~Lk~~l~~Le 201 (251)
.++..++.++..-+.|+..+..||
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 258
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.11 E-value=2.6e+02 Score=20.69 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 025526 168 RRKSYADNANALKAQLDQQKNVVNNLVSNTR------------LLESKIQEARSKKDTLKAR 217 (251)
Q Consensus 168 rk~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~------------~Le~ki~e~k~k~~~LkAr 217 (251)
|+..+...+..++.+++.....-+.|..-.. .++.+|.++..+++.|.+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444443332222 2345555555555555544
No 259
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.09 E-value=1.6e+02 Score=18.44 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 190 VNNLVSNTRLLESKIQEARSKKDTLK 215 (251)
Q Consensus 190 v~~Lk~~l~~Le~ki~e~k~k~~~Lk 215 (251)
+.+|+..+++|+.+-.+++.-++-|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 55677777777777666666555544
No 260
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.02 E-value=3.9e+02 Score=22.80 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 183 LDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 183 l~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
+...++.+++++.....+.+.+++.++.
T Consensus 180 l~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 180 CHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 261
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=20.97 E-value=3e+02 Score=21.52 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025526 130 KRLENKCKAAEQASEDWYRKAQLALQKGE 158 (251)
Q Consensus 130 k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 158 (251)
++++.+++.......+.-..+..|...||
T Consensus 13 ~~L~~el~~~~~~r~~~~~~i~~A~~~GD 41 (156)
T 2f23_A 13 ERLMQQLERERERLQEATKILQELMESSD 41 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555555544455555566677777786
No 262
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=20.96 E-value=3.4e+02 Score=22.00 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCHH
Q 025526 79 FDRLARVVKSYANAILSSFEDPE 101 (251)
Q Consensus 79 f~Rl~~lira~in~~lDk~EDP~ 101 (251)
|....+-+...+..+...+.+|+
T Consensus 54 ~~~~l~~~~~~l~~~~~~~~~~~ 76 (258)
T 2yfa_A 54 TLAKLDAFSKQQAYLATTFKSPE 76 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 44445555666777777777875
No 263
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.96 E-value=3.9e+02 Score=22.78 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 170 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 221 (251)
Q Consensus 170 ~~~e~~~~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k~~~LkAr~~~A 221 (251)
.++|.++..++..++.++..+.+-...+..++-+|-..+.+...|+.+....
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~l 131 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSAL 131 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhh
Confidence 4567777777777777777777777777777777777777777777765443
No 264
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.96 E-value=2e+02 Score=19.29 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
|+..++.++..-..|...+..|+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 265
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=20.87 E-value=3.2e+02 Score=21.75 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 025526 78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQ 120 (251)
Q Consensus 78 if~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~kar~ 120 (251)
-+.|+..++...+..+++.+.+...-+-..|.+.++.+.+...
T Consensus 15 ~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~ 57 (217)
T 1xwm_A 15 KLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEE 57 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHH
Confidence 4667888888888888877753222233333344444444333
No 266
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.79 E-value=1.9e+02 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025526 189 VVNNLVSNTRLLESKIQEAR 208 (251)
Q Consensus 189 ~v~~Lk~~l~~Le~ki~e~k 208 (251)
.|+-|+.+|++|+..|..++
T Consensus 47 EV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 47 EVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665543
No 267
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=20.76 E-value=1.2e+02 Score=27.59 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Q 025526 79 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 117 (251)
Q Consensus 79 f~Rl~~lira~in~~lDk~EDP~~mLdQ~Ireme~~L~k 117 (251)
+..+.+.+...+..++..-.+|+..|+++..++++.+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~~~~~l~~ 389 (477)
T 2vgq_A 351 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNSAMAFAE 389 (477)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Confidence 445555566666666666567777776666666555543
No 268
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.60 E-value=2.5e+02 Score=20.36 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 210 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~k~k 210 (251)
++...+..+..+..|...+..++.++.+++.+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444433
No 269
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus}
Probab=20.41 E-value=91 Score=26.07 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.9
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 94 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA 127 (251)
Q Consensus 94 lDk~EDP~~mLdQ~Ireme~~L~kar~~lA~v~A 127 (251)
+|.++||..++|+.+..+...|..+...+...+.
T Consensus 2 ~~p~~d~~~~~E~EL~~aa~aIe~A~~~l~~l~~ 35 (189)
T 2jsw_A 2 IDPFTDPTVIAENELLGAAAAIEAAAKKLEQLKP 35 (189)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667899999999999999988888887776633
No 270
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.38 E-value=3.5e+02 Score=22.00 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 025526 192 NLVSNTRLLESKIQ 205 (251)
Q Consensus 192 ~Lk~~l~~Le~ki~ 205 (251)
.+...+.+++.++.
T Consensus 117 aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 117 AVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 271
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.35 E-value=2.4e+02 Score=20.00 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 177 NALKAQLDQQKNVVNNLVSNTRLLESKIQEA 207 (251)
Q Consensus 177 ~~l~~ql~~~~~~v~~Lk~~l~~Le~ki~e~ 207 (251)
..++.++......+..++.++..++.+|+.+
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHH
Confidence 3444444444444555555555555554444
No 272
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.34 E-value=1.6e+02 Score=19.52 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025526 179 LKAQLDQQKNVVNNLVSNTRLLES 202 (251)
Q Consensus 179 l~~ql~~~~~~v~~Lk~~l~~Le~ 202 (251)
+...++.+......|+..+..++.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443
No 273
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.33 E-value=1.8e+02 Score=18.73 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025526 173 ADNANALKAQLDQQKNVVNNL 193 (251)
Q Consensus 173 e~~~~~l~~ql~~~~~~v~~L 193 (251)
|+.+..++..++.++.....|
T Consensus 4 Eekv~~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
Done!