BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025527
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana
GN=At4g09580 PE=1 SV=1
Length = 287
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/244 (75%), Positives = 210/244 (86%), Gaps = 4/244 (1%)
Query: 1 MAAARNVAAGDGSR-VFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEFAAFVG 56
MAA RN+ G+R + +DEE +G D+SPT KR KSERFPL+ WEFA F
Sbjct: 1 MAAPRNLTGDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFT 60
Query: 57 VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYI 116
VFL+F TGLFCIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y FI+GYCSTYI
Sbjct: 61 VFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYI 120
Query: 117 FMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 176
FMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEK
Sbjct: 121 FMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEK 180
Query: 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASY 236
LRFFQAEIAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPFH+FFLATL+GL+PASY
Sbjct: 181 LRFFQAEIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASY 240
Query: 237 ITVR 240
ITVR
Sbjct: 241 ITVR 244
>sp|Q8MXN7|TM41_DICDI Transmembrane protein 41 homolog OS=Dictyostelium discoideum
GN=DDB_G0275543 PE=3 SV=2
Length = 334
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 121/196 (61%)
Query: 45 PLTHWEFAAFVGVFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYP 104
PL W GV + + LF + ++ ++LP+ D++LL D L+ Y D
Sbjct: 96 PLPLWLLVIVFGVSISVIVFLFLNFPSLSPQHKQLIRLPKNFKDVKLLSDILSQYTDDNY 155
Query: 105 VPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLI 164
I + Y F+Q F IPG++F+S L+G LFG+ G LV F AT GA+ + +S I
Sbjct: 156 FIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYI 215
Query: 165 GRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFF 224
GR LV +P+KL+ F ++++R+ LLNY++FLRITP LPN FINLASP++D+P H F
Sbjct: 216 GRNLVRKLFPDKLKLFSDSLSQKRDNLLNYIVFLRITPFLPNWFINLASPLLDVPIHTFA 275
Query: 225 LATLIGLIPASYITVR 240
+ T IG++PA+++ V+
Sbjct: 276 IGTFIGIMPATFLAVK 291
>sp|Q5U4K5|TM41B_XENLA Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1
Length = 278
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 10/231 (4%)
Query: 19 EEESVNG----KVKEGDE--SPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTM 72
E S G + G+E +P A + SE V +FL + +F +Y
Sbjct: 4 HERSHTGGHTFQCNHGNEKKAPAAGKVHSEGGS-ARMSLLILVSIFLCAASVMFLVYKYF 62
Query: 73 PA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFM 129
P + K+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+
Sbjct: 63 PQLSEEELEKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFL 122
Query: 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRRE 189
S+L+G L+ L LV + GAS C+ LS L+GRP+V + +K + ++ + R+
Sbjct: 123 SILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDKAIKWSQQVERHRD 182
Query: 190 KLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
L+NY++FLRITP LPN FIN+ SP++++P +FFL T IG+ P S++ ++
Sbjct: 183 HLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGVAPPSFVAIK 233
>sp|Q8K1A5|TM41B_MOUSE Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1
Length = 291
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 9/232 (3%)
Query: 12 GSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71
G R R + + G +E P A+ S R L V +F +F +Y
Sbjct: 21 GDRAVRTQGSAAPGSKDHLNEKPCAEA-GSARTSLL-----ILVSIFSCAAFVMFLVYKN 74
Query: 72 MPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIF 128
P + +K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF
Sbjct: 75 FPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIF 134
Query: 129 MSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRR 188
+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK + ++ + R
Sbjct: 135 LSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHR 194
Query: 189 EKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
E L+NY++FLRITP LPN FIN+ SP++++P +FF+ T +G+ P S++ ++
Sbjct: 195 EHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIK 246
>sp|Q5RBZ8|TM41B_PONAB Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1
Length = 291
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 135/251 (53%), Gaps = 27/251 (10%)
Query: 1 MAAARNVAAGDGSRVFRDEEESVNGKVKEGDESPTAKRFKSERFPLTHWEFAA------- 53
M A GDG+ R G +P ++ ++ E+ W A
Sbjct: 12 MGADHTTPVGDGAAGTR------------GPAAPGSRDYQKEK----SWAEAGSARMSLL 55
Query: 54 -FVGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFII 109
V +FL +F +Y P + +K+PR + D + L L+ Y + V ++
Sbjct: 56 ILVSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLV 115
Query: 110 GYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLV 169
Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 116 AYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVV 175
Query: 170 SWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLI 229
+ EK + ++ + RE L+NY++FLRITP LPN FIN+ SP++++P +FF+ T +
Sbjct: 176 YKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFL 235
Query: 230 GLIPASYITVR 240
G+ P S++ ++
Sbjct: 236 GVAPPSFVAIK 246
>sp|Q9VX39|TM41_DROME Transmembrane protein 41 homolog OS=Drosophila melanogaster
GN=CG8408 PE=2 SV=2
Length = 320
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 112/188 (59%), Gaps = 3/188 (1%)
Query: 56 GVFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYC 112
G+F+ + + +Y P A++ LK+PR I D ++L L Y Y + G
Sbjct: 87 GIFVASLVTMCYVYAIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVV 146
Query: 113 STYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172
Y+F+QTF IPG++F+S+L G L+ L L+ F + GA+ C+ LS L+GR L+ F
Sbjct: 147 VAYVFLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHF 206
Query: 173 WPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLI 232
WP+K + + + R+ L NYMLFLR+TP LPN FINLASP++ +P HIF L T G+
Sbjct: 207 WPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVIGVPLHIFALGTFCGVA 266
Query: 233 PASYITVR 240
P S I ++
Sbjct: 267 PPSVIAIQ 274
>sp|A1A5V7|TM41B_DANRE Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1
Length = 282
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)
Query: 17 RDEEES--VNGKVKEGDESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPA 74
R+ E S V + + E+P K +S V +F ++ ++ P
Sbjct: 9 RETESSPLVEQEPRPSKETPVPKGAQSPGGASARMSILLLVVIFACSACVMYLVFRNFPQ 68
Query: 75 ---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSL 131
+ K+K+P+ + D + L L+ Y Y ++ Y +TYIF+QTF IPG+IF+S+
Sbjct: 69 LSEDEREKIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSI 128
Query: 132 LAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKL 191
L+G L+ L LV + GAS C+ LS L+GRP+V + E+ + + ++ K RE L
Sbjct: 129 LSGYLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQVDKHREHL 188
Query: 192 LNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
+NY++FLRITP LPN FIN+ SP++++P +FFL T +G+ P S++ +
Sbjct: 189 INYIIFLRITPFLPNWFINITSPVINVPLGVFFLGTFLGVAPPSFVAIN 237
>sp|Q5ZIL6|TM41B_CHICK Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1
Length = 269
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 120/189 (63%), Gaps = 3/189 (1%)
Query: 55 VGVFLLFVTGLFCIYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +F + +F +Y P + + GK +K+PR + D + L L+ Y + V ++ Y
Sbjct: 36 VSIFTIAAFLMFLVYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAY 95
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TY+F+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 96 FATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 155
Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
+ EK + ++ + RE L+NY++FLRITP LPN FIN+ SP++++P +FF+ T +G+
Sbjct: 156 YLTEKAVKWSEQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGV 215
Query: 232 IPASYITVR 240
P S++ ++
Sbjct: 216 APPSFVAIK 224
>sp|Q5BJD5|TM41B_HUMAN Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1
Length = 291
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 55 VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +FL +F +Y P + +K+PR + D + L L+ Y + V ++ Y
Sbjct: 58 VSIFLSAAFVMFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAY 117
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V
Sbjct: 118 FATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYK 177
Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
+ EK + ++ + RE L+NY++FLRITP LPN FIN+ SP++++P +FF+ T +G+
Sbjct: 178 YLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGV 237
Query: 232 IPASYITVR 240
P S++ ++
Sbjct: 238 APPSFVAIK 246
>sp|A4II98|TM41B_XENTR Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2
SV=1
Length = 278
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 118/189 (62%), Gaps = 3/189 (1%)
Query: 55 VGVFLLFVTGLFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGY 111
V +FL + +F +Y P + K+K+PR + D + L L+ Y + V ++ Y
Sbjct: 45 VSIFLCAASIMFLVYKHFPQLSEEEREKIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAY 104
Query: 112 CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171
+TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS + LS L+GRP+V
Sbjct: 105 FTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFSYLLSYLVGRPVVYK 164
Query: 172 FWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGL 231
+ +K + ++ + R+ L+NY++FLRITP LPN FIN+ SP++++P +FFL T IG+
Sbjct: 165 YLSDKAIKWSQQVERHRDHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFLGTFIGV 224
Query: 232 IPASYITVR 240
P S++ ++
Sbjct: 225 APPSFVAIK 233
>sp|Q5FVN2|TM41B_RAT Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1
Length = 291
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 65 LFCIYLTMPA---ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTF 121
+F +Y P + +K+PR + D + L L+ Y + V ++ Y +TYIF+QTF
Sbjct: 68 MFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTF 127
Query: 122 MIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQ 181
IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK +
Sbjct: 128 AIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWS 187
Query: 182 AEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
++ + RE L+NY++FLRITP LPN FIN+ SP++++P +FF+ T +G+ P S++ ++
Sbjct: 188 QQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIK 246
>sp|O62126|TM41_CAEEL Transmembrane protein 41 homolog OS=Caenorhabditis elegans
GN=tag-175 PE=3 SV=1
Length = 246
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
Query: 57 VFLLFVTGLFCIYLTMP---AADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCS 113
+F F +F +Y P A + LK PR + D + L L+ Y ++ + G
Sbjct: 17 IFATFAVSIFAVYSNFPEVSADEKVHLKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIV 76
Query: 114 TYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW 173
Y+F+Q+F IPG+IF+++L+G LF ++LV + GA+ C+ +SKL GR V +
Sbjct: 77 VYVFLQSFAIPGSIFLTILSGYLFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKF 136
Query: 174 PEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIP 233
PE++ +Q +++K R+ LNYM+FLR+TP +PN IN+ASP++D+P FF T +G+ P
Sbjct: 137 PERIAKWQDDLSKHRDDFLNYMIFLRVTPIVPNWLINIASPVLDVPLAPFFWGTFLGVAP 196
Query: 234 ASYITVR 240
S++ ++
Sbjct: 197 PSFLYIQ 203
>sp|Q08D99|TM41A_BOVIN Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1
Length = 264
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 12/200 (6%)
Query: 53 AFVGVFLLFVTGLFCIYL---------TMPAADYG---KLKLPRTIADLRLLKDNLATYA 100
+ +G+ L+F F +YL T+ +A+ L P +A+LR L + L Y
Sbjct: 3 SLLGLLLVFAGSTFALYLLSTRLPRASTLVSAEESGDRSLWFPSDLAELRELSEVLREYR 62
Query: 101 QDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFL 160
+++ V + +CS Y++ Q+F IPG+ F+++LAGALFG GL+L + GA+ C+ L
Sbjct: 63 KEHQVYVFLLFCSAYLYKQSFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLL 122
Query: 161 SKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPF 220
S + G+ LV +++P+K+ Q ++ + R L ++LFLR+ P PN F+NL++PI++IP
Sbjct: 123 SSVFGKQLVVFYFPDKVALLQKKVEENRNGLFFFLLFLRLFPMTPNWFLNLSAPILNIPI 182
Query: 221 HIFFLATLIGLIPASYITVR 240
FF + LIGLIP ++I V+
Sbjct: 183 VQFFFSVLIGLIPYNFICVQ 202
>sp|Q9D8U2|TM41A_MOUSE Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1
Length = 264
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 103/162 (63%)
Query: 79 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFG 138
L P +A+LR L + L Y +++ + +CS Y++ Q F IPG+ F+++LAGALFG
Sbjct: 41 SLWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFG 100
Query: 139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFL 198
GL+L + GA+ C+ LS L G+ LV ++P+K+ Q ++ + R L ++LFL
Sbjct: 101 PWLGLLLCCVLTSVGATGCYLLSSLFGKQLVISYFPDKVALLQKKVEENRNSLFFFLLFL 160
Query: 199 RITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
R+ P PN F+NL++PI++IP FF + LIGLIP ++I V+
Sbjct: 161 RLFPMTPNWFLNLSAPILNIPIVQFFFSVLIGLIPYNFICVQ 202
>sp|Q96HV5|TM41A_HUMAN Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=2 SV=1
Length = 264
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 114/199 (57%), Gaps = 12/199 (6%)
Query: 54 FVGVFLLFVTGLFCIYL------------TMPAADYGKLKLPRTIADLRLLKDNLATYAQ 101
+G+ L+F F +YL + A L P +A+LR L + L Y +
Sbjct: 4 LLGLLLVFAGCTFALYLLSTRLPRGRRLGSTEEAGGRSLWFPSDLAELRELSEVLREYRK 63
Query: 102 DYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLS 161
++ + +C Y++ Q F IPG+ F+++LAGALFG GL+L + GA+ C+ LS
Sbjct: 64 EHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLS 123
Query: 162 KLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFH 221
+ G+ LV ++P+K+ Q ++ + R L ++LFLR+ P PN F+NL++PI++IP
Sbjct: 124 SIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIPIV 183
Query: 222 IFFLATLIGLIPASYITVR 240
FF + LIGLIP ++I V+
Sbjct: 184 QFFFSVLIGLIPYNFICVQ 202
>sp|Q502G2|T41AA_DANRE Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1
Length = 281
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 101/163 (61%)
Query: 78 GKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALF 137
+LK P + +L+ + + L Y ++ ++ +CS Y++ Q F IPG+ F+++LAGALF
Sbjct: 57 SRLKFPSDLDELKEMAELLQFYKTEHTGYVLLLFCSAYLYKQAFAIPGSSFLNILAGALF 116
Query: 138 GVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLF 197
G GL+L T GA+ CF LS+ G+ + +P+K+ Q ++ + R L ++LF
Sbjct: 117 GTWFGLLLTCVLTTVGATLCFLLSQAFGKHHIVKLFPDKVAMLQKKVEENRSSLFFFLLF 176
Query: 198 LRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
LR P PN F+N+ SPI++IP +FF+A IGL+P ++I V+
Sbjct: 177 LRFFPMSPNWFLNMTSPILNIPVTLFFMAVFIGLMPYNFICVQ 219
>sp|Q6NV38|T41AB_DANRE Transmembrane protein 41A-B OS=Danio rerio GN=tmem41ab PE=2 SV=1
Length = 278
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%)
Query: 73 PAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLL 132
P +LK P + +LR L + L Y ++ I +CS Y++ Q+F IPG+ F+++L
Sbjct: 46 PEEKVLRLKFPSDLEELRELAELLKFYKTEHTGYVFILFCSAYLYKQSFAIPGSSFLNML 105
Query: 133 AGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLL 192
+GALFG + GLI+ T G+++C+ LS+ G+ + +PEK+ Q + + R L
Sbjct: 106 SGALFGPLHGLIIACTLTTVGSTNCYLLSRTFGKRHIVRLFPEKVAMLQRMVEENRSSLF 165
Query: 193 NYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVR 240
++LFLR P PN F+N+ SPI++IP IFF + LIGLIP ++I V
Sbjct: 166 FFLLFLRFFPMTPNWFLNVTSPILNIPIPIFFFSILIGLIPYNFICVH 213
>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
Length = 209
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 94 DNLATYAQDYPVPFIIGY-CSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATA 152
D L T+A + F++ Y +T +F+ PG+I ++L AG +FGVI G I V AT
Sbjct: 13 DGLGTWA---AIAFMLLYTVATVVFL-----PGSI-LTLGAGVVFGVILGSIYVFIGATL 63
Query: 153 GASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLA 212
GA++ F + + + R V+ +F + A +E L ++ R++P P +N A
Sbjct: 64 GATAAFLVGRYLARGWVAKKIAGNQKFKAIDEAVGKEG-LKIVILTRLSPVFPFNLLNYA 122
Query: 213 SPIVDIPFHIFFLATLIGLIPASYITV 239
I ++ + + +L G+IP + + V
Sbjct: 123 YGITNVSLKDYVIGSL-GMIPGTIMYV 148
>sp|P76221|YDJZ_ECOLI TVP38/TMEM64 family inner membrane protein YdjZ OS=Escherichia coli
(strain K12) GN=ydjZ PE=1 SV=1
Length = 235
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 135 ALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNY 194
+LFG G +L ++ AGA+ CFF+++++GR +V + + R K +
Sbjct: 91 SLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGK--HT 148
Query: 195 MLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYI 237
+L R+ P +P I+ A+ + I F FF+AT +G +PA+ +
Sbjct: 149 ILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIV 191
>sp|P54449|YQED_BACSU Uncharacterized protein YqeD OS=Bacillus subtilis (strain 168)
GN=yqeD PE=4 SV=1
Length = 208
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 129 MSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP-EKLRFF---QAEI 184
++ L GA+FG G+ + + + G FFL++ R W +K++ + Q+
Sbjct: 58 IAALNGAVFGTANGIWITLTGSMLGTILLFFLARYSFRD-----WARKKVQAYPAIQSYE 112
Query: 185 AKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIP 233
A + +L R+ P +P+L +N+ + + +H+FF A+LIG IP
Sbjct: 113 ASFNKNAFTAVLLGRLIPVIPSLVMNVICGLSQVRWHVFFFASLIGKIP 161
>sp|P67118|Y1528_MYCBO TVP38/TMEM64 family membrane protein Mb1528c OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb1528c PE=3 SV=1
Length = 252
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 92 LKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNAT 151
L+D + +P+ F++ T + + F P T F +L AG LFG + G+ + V +T
Sbjct: 57 LRDWAKSLGAWFPLAFLL--VHTVVTVPPF--PRTAF-TLAAGLLFGSVVGVFIAVVGST 111
Query: 152 AGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINL 211
A A L + G L S + R + RE+ +L LR+ P +P IN
Sbjct: 112 ASAVIAMLLVRATGWQLNSLV---RRRAINRLDERLRERGWLAILSLRLIPVVPFAAINY 168
Query: 212 ASPIVDIPFHIFFLATLIGLIPASYITV 239
A+ + F ATL GL+P + V
Sbjct: 169 AAGASGVRILSFAWATLAGLLPGTAAVV 196
>sp|P67117|Y1491_MYCTU TVP38/TMEM64 family membrane protein Rv1491c/MT1538
OS=Mycobacterium tuberculosis GN=Rv1491c PE=3 SV=1
Length = 252
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 92 LKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNAT 151
L+D + +P+ F++ T + + F P T F +L AG LFG + G+ + V +T
Sbjct: 57 LRDWAKSLGAWFPLAFLL--VHTVVTVPPF--PRTAF-TLAAGLLFGSVVGVFIAVVGST 111
Query: 152 AGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINL 211
A A L + G L S + R + RE+ +L LR+ P +P IN
Sbjct: 112 ASAVIAMLLVRATGWQLNSLV---RRRAINRLDERLRERGWLAILSLRLIPVVPFAAINY 168
Query: 212 ASPIVDIPFHIFFLATLIGLIPASYITV 239
A+ + F ATL GL+P + V
Sbjct: 169 AAGASGVRILSFAWATLAGLLPGTAAVV 196
>sp|P76219|YDJX_ECOLI TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli
(strain K12) GN=ydjX PE=3 SV=2
Length = 236
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 111 YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVS 170
Y +I ++PG+I + + G +FG + G +L + AT +S F L++ +GR L+
Sbjct: 51 YILLFIIATLLLLPGSILV-IAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLL 109
Query: 171 WFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPF 220
+ F E R +++++ R+ P P N A + I F
Sbjct: 110 KYVGHSNTFQAIEKGIARNG-IDFLILTRLIPLFPYNIQNYAYGLTTIAF 158
>sp|P34943|NDUA9_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1
Length = 380
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 138 GVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLF 197
GV + + + NA +SS + SK +G V +PE AEI R ++ LNY
Sbjct: 160 GVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRETFPEATIIKPAEIFGREDRFLNYFAN 219
Query: 198 LRITPSLPNLFINLASPIVDIPFHI 222
+R +P I+L V P +I
Sbjct: 220 IRWFGGVP--LISLGKKTVKQPVYI 242
>sp|B2WM34|SLX1_PYRTR Structure-specific endonuclease subunit slx1 OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=slx1 PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 173 WPEKLRFFQAEIAKRREKLLNYM-------LFLRITPS-LPNLFINLASPIVDIPFHIFF 224
WP +RFF ++ + EK ++ M + +R+TP+ LP L +P V F
Sbjct: 144 WPLHVRFFAPDVFSQWEKHISKMNTSLRKSITIRLTPAELPKL-----APDVSSEMRTHF 198
Query: 225 LATLIGLIPASYITVRP 241
+ +I IP +Y ++P
Sbjct: 199 IPEVIRAIPVAYEDIKP 215
>sp|Q6BQJ1|TVP38_DEBHA Golgi apparatus membrane protein TVP38 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=TVP38 PE=3 SV=1
Length = 383
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 103 YPVPFIIGYCSTYIFMQTFM-IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLS 161
+ + F G T +FM F + G +S+LAG ++G + G IL+ + +G+ F +
Sbjct: 93 HGLKFGQGLLFTLVFMVGFPPLLGFSALSMLAGMVYGFVHGWILLACASISGSFCSFLVF 152
Query: 162 KLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLA-SPIVDIPF 220
+ + +F R + L ++ LR+ P LP N A + I ++P
Sbjct: 153 RYLLHSRAERLMNSNKKFRAFSEILREDSSLFILVLLRLCP-LPYSLSNGALAAIPELPA 211
Query: 221 HIFFLATLI 229
+FLA+LI
Sbjct: 212 TTYFLASLI 220
>sp|P70172|NTCP2_MOUSE Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2
PE=2 SV=2
Length = 348
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 152 AGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINL 211
AG S FFL++L G+P W+ + R E + +L + ++ L +P NL
Sbjct: 236 AGYSLGFFLARLAGQP---WY---RCRTVALETGMQNTQLCSTIVQLSFSPEDLNLVFTF 289
Query: 212 ASPIVDIPFHIFFLATLIGLIPASYITVR 240
P++ F + F A ++G+ Y+T R
Sbjct: 290 --PLIYTVFQLVFAAVILGI----YVTYR 312
>sp|Q4L9Y1|PTMCB_STAHJ PTS system mannitol-specific EIICB component OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=mtlA PE=3 SV=1
Length = 519
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 118 MQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGA-----SSCFFLSKLIGRPLVSWF 172
M T++IP + ++ G L +RG I V AT G + L +I PLV W
Sbjct: 62 MITYLIP--LLIAFSGGRLIHDLRGGI-VAATATMGVIVALPDTPMLLGAMIMGPLVGWL 118
Query: 173 WPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLA----TL 228
+ +F Q + E L N + + L L +PI+ HI +A
Sbjct: 119 MKKVDQFLQPRTPQGFEMLFNNFSAGILAFIMTILGFKLLAPIMQFIMHILSVAVEFLVH 178
Query: 229 IGLIPASYITVRPRRCVIL 247
+ L+P I V P + + L
Sbjct: 179 LHLLPIVSIIVEPAKILFL 197
>sp|Q62633|NTCP2_RAT Ileal sodium/bile acid cotransporter OS=Rattus norvegicus
GN=Slc10a2 PE=2 SV=1
Length = 348
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 152 AGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINL 211
AG S FFL++L G+P W+ + R E + +L + ++ L +P NL
Sbjct: 236 AGYSLGFFLARLAGQP---WY---RCRTVALETGMQNTQLCSTIVQLSFSPEDLNLVFTF 289
Query: 212 ASPIVDIPFHIFFLATLIGLIPASYITVR 240
P++ F + F A ++G+ Y+T +
Sbjct: 290 --PLIYTVFQLVFAAIILGM----YVTYK 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.145 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,018,764
Number of Sequences: 539616
Number of extensions: 3600517
Number of successful extensions: 9883
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 9855
Number of HSP's gapped (non-prelim): 89
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)