Query 025527
Match_columns 251
No_of_seqs 284 out of 1444
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3140 Predicted membrane pro 100.0 4.1E-29 9E-34 223.7 13.7 217 32-248 20-237 (275)
2 COG0398 Uncharacterized conser 100.0 3.3E-27 7E-32 206.9 21.0 150 87-244 33-185 (223)
3 PF09335 SNARE_assoc: SNARE as 99.9 5.1E-21 1.1E-25 150.9 14.5 117 123-243 1-122 (123)
4 PRK10847 hypothetical protein; 99.8 1.6E-18 3.4E-23 151.6 15.5 134 109-247 32-180 (219)
5 COG0586 DedA Uncharacterized m 99.8 2E-18 4.3E-23 150.0 16.0 138 108-250 18-169 (208)
6 COG1238 Predicted membrane pro 99.4 8.8E-12 1.9E-16 104.2 14.4 134 108-248 20-159 (161)
7 PF06695 Sm_multidrug_ex: Puta 96.1 0.1 2.2E-06 41.6 10.7 96 137-236 14-120 (121)
8 PLN02953 phosphatidate cytidyl 91.0 15 0.00033 35.2 15.6 26 145-170 273-298 (403)
9 PRK11677 hypothetical protein; 84.4 2.8 6E-05 34.2 5.6 25 143-167 3-27 (134)
10 TIGR02359 thiW thiW protein. L 83.5 19 0.0004 30.2 10.3 34 124-157 32-65 (160)
11 PRK01844 hypothetical protein; 82.3 3.5 7.7E-05 30.0 4.8 34 139-172 3-36 (72)
12 PF06695 Sm_multidrug_ex: Puta 80.9 15 0.00032 29.2 8.5 36 120-155 82-120 (121)
13 COG0398 Uncharacterized conser 77.8 48 0.0011 29.1 13.8 80 87-169 36-115 (223)
14 PRK00523 hypothetical protein; 76.0 13 0.00028 27.1 6.1 31 141-171 6-36 (72)
15 COG0575 CdsA CDP-diglyceride s 72.9 21 0.00046 31.9 8.2 29 143-171 136-164 (265)
16 PF06295 DUF1043: Protein of u 71.2 8.4 0.00018 30.9 4.7 23 145-167 1-23 (128)
17 PF07155 ECF-ribofla_trS: ECF- 69.2 62 0.0013 26.4 12.6 31 126-157 39-69 (169)
18 COG3763 Uncharacterized protei 67.5 26 0.00056 25.4 6.0 32 140-171 4-35 (71)
19 PF03672 UPF0154: Uncharacteri 66.6 8.4 0.00018 27.4 3.3 28 145-172 2-29 (64)
20 PF09512 ThiW: Thiamine-precur 61.6 21 0.00045 29.7 5.2 27 122-148 27-53 (150)
21 COG4956 Integral membrane prot 60.6 1.1E+02 0.0024 28.6 10.2 36 147-187 41-76 (356)
22 PRK09609 hypothetical protein; 58.9 53 0.0011 30.5 7.9 12 223-234 210-221 (312)
23 PRK11624 cdsA CDP-diglyceride 57.6 39 0.00085 30.8 6.9 31 143-173 154-184 (285)
24 PF01148 CTP_transf_1: Cytidyl 57.5 91 0.002 26.8 9.1 26 142-167 131-156 (259)
25 PF04246 RseC_MucC: Positive r 57.4 43 0.00093 26.6 6.4 39 131-169 82-122 (135)
26 COG3105 Uncharacterized protei 57.3 40 0.00087 27.4 6.0 26 142-167 7-32 (138)
27 PF06624 RAMP4: Ribosome assoc 56.6 6.8 0.00015 27.8 1.4 36 33-70 24-59 (63)
28 PF11990 DUF3487: Protein of u 55.6 1E+02 0.0023 24.5 8.6 10 178-187 87-96 (121)
29 PF09335 SNARE_assoc: SNARE as 53.9 93 0.002 23.4 10.3 39 135-173 8-46 (123)
30 PRK00159 putative septation in 52.3 61 0.0013 24.5 6.0 30 42-71 25-54 (87)
31 PF06781 UPF0233: Uncharacteri 52.1 52 0.0011 24.8 5.6 18 43-60 26-43 (87)
32 PRK13661 hypothetical protein; 49.8 30 0.00064 29.6 4.5 31 125-156 40-70 (182)
33 COG3086 RseC Positive regulato 49.6 58 0.0013 27.0 6.0 24 144-167 104-127 (150)
34 PF06305 DUF1049: Protein of u 43.3 1.1E+02 0.0023 21.0 6.2 12 175-186 55-66 (68)
35 PF04123 DUF373: Domain of unk 43.1 2.9E+02 0.0063 26.0 11.1 43 121-167 163-205 (344)
36 KOG3491 Predicted membrane pro 39.4 51 0.0011 23.1 3.5 35 35-71 26-60 (65)
37 TIGR03750 conj_TIGR03750 conju 38.0 2E+02 0.0043 22.7 8.5 11 177-187 83-93 (111)
38 PRK14472 F0F1 ATP synthase sub 35.9 61 0.0013 27.0 4.3 47 130-179 7-53 (175)
39 PF12822 DUF3816: Protein of u 35.7 33 0.00071 27.9 2.6 28 129-156 34-61 (172)
40 PLN02594 phosphatidate cytidyl 34.8 2.5E+02 0.0055 26.5 8.5 31 145-175 129-159 (342)
41 COG4732 Predicted membrane pro 34.6 58 0.0013 27.3 3.8 29 122-150 36-64 (177)
42 PRK12821 aspartyl/glutamyl-tRN 33.8 58 0.0013 31.9 4.2 25 129-153 101-125 (477)
43 PF01788 PsbJ: PsbJ; InterPro 33.5 83 0.0018 20.3 3.5 22 42-65 6-27 (40)
44 PF07332 DUF1469: Protein of u 32.6 2.3E+02 0.0049 21.7 10.9 27 138-164 70-96 (121)
45 COG1238 Predicted membrane pro 32.3 92 0.002 26.1 4.7 51 199-250 31-81 (161)
46 PF09512 ThiW: Thiamine-precur 32.0 2.6E+02 0.0057 23.2 7.2 75 89-164 30-115 (150)
47 PF13829 DUF4191: Domain of un 31.8 3.3E+02 0.0072 24.1 8.3 70 87-167 8-78 (224)
48 PHA02819 hypothetical protein; 31.7 96 0.0021 22.5 4.0 7 30-36 32-38 (71)
49 PRK10862 SoxR reducing system 30.8 1.2E+02 0.0025 25.1 5.1 24 144-167 104-127 (154)
50 cd02433 Nodulin-21_like_2 Nodu 30.3 3.4E+02 0.0075 23.9 8.3 16 154-169 194-209 (234)
51 COG4615 PvdE ABC-type sideroph 30.1 3.7E+02 0.008 26.5 8.8 22 198-219 105-126 (546)
52 COG1300 SpoIIM Uncharacterized 30.1 3.7E+02 0.008 23.3 9.8 29 131-159 88-116 (207)
53 KOG1109 Vacuole membrane prote 29.9 36 0.00078 32.6 2.1 86 148-233 217-320 (440)
54 COG0586 DedA Uncharacterized m 28.6 3.8E+02 0.0082 23.0 8.6 69 87-168 98-168 (208)
55 PF01102 Glycophorin_A: Glycop 28.5 1.1E+02 0.0025 24.4 4.5 24 134-163 68-91 (122)
56 COG3694 ABC-type uncharacteriz 28.2 4.5E+02 0.0098 23.8 10.1 120 42-172 135-255 (260)
57 PRK12287 tqsA pheromone autoin 27.8 4.8E+02 0.011 24.0 9.9 56 89-144 186-246 (344)
58 COG5522 Predicted integral mem 27.6 4.3E+02 0.0094 23.4 10.5 113 57-169 47-182 (236)
59 PRK10847 hypothetical protein; 27.3 2.4E+02 0.0051 24.4 6.7 47 201-247 46-98 (219)
60 cd02434 Nodulin-21_like_3 Nodu 27.2 4.2E+02 0.0092 23.1 9.1 16 154-169 185-200 (225)
61 PF03773 DUF318: Predicted per 27.0 4.8E+02 0.01 23.7 10.9 26 48-73 184-210 (307)
62 COG4064 MtrG Tetrahydromethano 26.7 1.1E+02 0.0024 22.1 3.7 23 134-156 51-73 (75)
63 PF13858 DUF4199: Protein of u 26.5 2.3E+02 0.005 22.7 6.2 38 138-175 66-103 (163)
64 PF12575 DUF3753: Protein of u 25.9 1.5E+02 0.0033 21.6 4.3 19 47-65 46-64 (72)
65 PF14163 SieB: Superinfection 25.8 3.2E+02 0.007 22.0 6.9 33 119-152 11-47 (151)
66 PRK02251 putative septation in 25.5 3E+02 0.0065 20.8 6.1 28 43-70 27-54 (87)
67 KOG4753 Predicted membrane pro 24.3 1.9E+02 0.0042 23.1 4.9 33 32-67 37-69 (124)
68 COG1178 ThiP ABC-type Fe3+ tra 23.8 4.8E+02 0.01 26.0 8.8 99 139-237 62-185 (540)
69 PF12072 DUF3552: Domain of un 23.3 1.3E+02 0.0028 25.8 4.2 28 143-170 3-30 (201)
70 PLN03100 Permease subunit of E 22.0 6.3E+02 0.014 23.2 10.3 16 150-165 118-133 (292)
71 PF12273 RCR: Chitin synthesis 21.4 83 0.0018 24.9 2.5 8 48-55 1-8 (130)
72 TIGR02762 TraL_TIGR type IV co 20.5 3.3E+02 0.0071 20.5 5.5 34 122-157 17-50 (95)
73 COG1177 PotC ABC-type spermidi 20.5 6.4E+02 0.014 22.8 10.1 94 138-231 70-174 (267)
74 KOG0474 Cl- channel CLC-7 and 20.4 1.3E+02 0.0029 30.8 4.1 54 91-144 435-493 (762)
75 PHA02947 S-S bond formation pa 20.3 1.8E+02 0.0039 25.6 4.4 32 43-74 174-205 (215)
No 1
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.96 E-value=4.1e-29 Score=223.75 Aligned_cols=217 Identities=46% Similarity=0.832 Sum_probs=202.8
Q ss_pred CChhhhcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHcCcc-cccccccCCcHHHHHHHHHHHHHhHHhCChhHHHH
Q 025527 32 ESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPAA-DYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIG 110 (251)
Q Consensus 32 ~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~l~~~~~~~P~~-~~~~~~lp~~l~dl~~l~~~l~~~~~~~~~~~~l~ 110 (251)
.++...+.++++.....|+....+++|.....++++.|..+|.. |.+.+++|++++|.+.+.+.+++|.+++.....++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~if~~~~~~l~~i~~s~~~~~~~~~l~lp~~i~~~~~L~~vl~~y~~~~~a~~~~~ 99 (275)
T KOG3140|consen 20 GQRAGQFLKKDELLLSLMSIAERLGIFLSFSLVLVYIYLSAPALSELGVLKLPRDILDLRGLGAVLRKYKATYFAAVLLG 99 (275)
T ss_pred chhhhhhcchhhhhhhhccHHHHHHHhhHHHHHHHHHHHcccCccccccccccchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44444445556777788888888889999999999999999988 58889999999999999999999999999999999
Q ss_pred HHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhhhHHHHHHHHHHhccc
Q 025527 111 YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKRREK 190 (251)
Q Consensus 111 fi~~~i~~~~~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~~~l~~~~~~l~~~~~~ 190 (251)
|++.|++.|++++||..++++.+|++||++.|+++++.++++|+++||++++.+||+.+.++++++...++..+++++++
T Consensus 100 ~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~~~ 179 (275)
T KOG3140|consen 100 FIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNRNS 179 (275)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025527 191 LLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRRCVILV 248 (251)
Q Consensus 191 ~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~~ 248 (251)
.+.++++.|++|+.|++++|+++++.+++++.|++++++|.+|.+++++..|+.+++.
T Consensus 180 ~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l 237 (275)
T KOG3140|consen 180 LLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASL 237 (275)
T ss_pred hhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhh
Confidence 8999999999999999999999999999999999999999999999999999988764
No 2
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=206.94 Aligned_cols=150 Identities=28% Similarity=0.473 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhHHhCChhHHHH-HHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 025527 87 ADLRLLKDNLATYAQDYPVPFIIG-YCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIG 165 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~~~~~~l~-fi~~~i~~~~~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lG 165 (251)
.+.+++++++++++.. ++++ |++.++.....++|+++ +++++|++||+++|++++++|+++|++++|+++|++|
T Consensus 33 ~~~~~l~~~i~~~g~~----~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 33 LDPETLREWIQAYGAL----GPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred cCHHHHHHHHHHcCch----HHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577778888776654 4555 77777778888899997 7999999999999999999999999999999999999
Q ss_pred HHHHhhhhh--hhHHHHHHHHHHhccchHHHHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHH
Q 025527 166 RPLVSWFWP--EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRR 243 (251)
Q Consensus 166 r~~~~~~~~--~~l~~~~~~l~~~~~~~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~ 243 (251)
|+..+++.+ ++.+++++.++++ ++..++++|++|++|++++||+||++++++++|.++|.+|++|++++|+++|+
T Consensus 108 r~~~~~~~~~~~~~~~~~~~~~~~---g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 108 RDWVLKFVGGKEKVQRIDAGLERN---GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhC---ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999988775 5788999999986 58999999999999999999999999999999999999999999999999996
Q ss_pred H
Q 025527 244 C 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 185 ~ 185 (223)
T COG0398 185 A 185 (223)
T ss_pred H
Confidence 3
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.87 E-value=5.1e-21 Score=150.91 Aligned_cols=117 Identities=29% Similarity=0.498 Sum_probs=103.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhh-h-hhHHH---HHHHHHHhccchHHHHHH
Q 025527 123 IPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW-P-EKLRF---FQAEIAKRREKLLNYMLF 197 (251)
Q Consensus 123 iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~-~-~~l~~---~~~~l~~~~~~~~~~vl~ 197 (251)
+|+++ +.+++|+++|++.+++++++|+++|+.++|+++|+++++..++.. + ++.++ .++.++|+ ++..+++
T Consensus 1 iP~~~-~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~~ 76 (123)
T PF09335_consen 1 IPGSI-LLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKY---GFWVLFL 76 (123)
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhh---hHHHHHH
Confidence 69988 479999999999999999999999999999999999965554433 2 33444 66666664 6889999
Q ss_pred hhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHH
Q 025527 198 LRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRR 243 (251)
Q Consensus 198 ~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~ 243 (251)
.|++|++|++++|+++|++++|+++|++++++|.+|++.+++++|+
T Consensus 77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999996
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.80 E-value=1.6e-18 Score=151.61 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=111.5
Q ss_pred HHHHHHHHhh---hccccChHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhh----h-
Q 025527 109 IGYCSTYIFM---QTFMIPGTIFMSLLAGALFG-------VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF----W- 173 (251)
Q Consensus 109 l~fi~~~i~~---~~~~iPg~~~L~l~aG~lfG-------~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~----~- 173 (251)
++|+.+++.. ...++|++++ .+++|++.+ ++..++.+++|+++|+.++|++||++|++.+++. .
T Consensus 32 ~lfl~~~le~~~~~~~~lPge~~-l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~~~~ 110 (219)
T PRK10847 32 ILFLILFCETGLVVTPFLPGDSL-LFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFR 110 (219)
T ss_pred HHHHHHHHHhccccCCCCCchHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccccCC
Confidence 3555655543 2356899984 677787754 5677899999999999999999999999987532 2
Q ss_pred hhhHHHHHHHHHHhccchHHHHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025527 174 PEKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRRCVIL 247 (251)
Q Consensus 174 ~~~l~~~~~~l~~~~~~~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~ 247 (251)
++++++.+++++|| +...+++.|++|+++ +++|++||+++||+++|++.+.+|.++|+.+++.+|+.+++
T Consensus 111 ~~~l~~~~~~~~r~---G~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~ 180 (219)
T PRK10847 111 RSYLDKTHQFYEKH---GGKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT 180 (219)
T ss_pred HHHHHHHHHHHHHc---CCEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34588999999987 457899999999997 58999999999999999999999999999999999998774
No 5
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.80 E-value=2e-18 Score=149.96 Aligned_cols=138 Identities=17% Similarity=0.322 Sum_probs=119.3
Q ss_pred HHHHHHHHHhh---hccccChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh-----
Q 025527 108 IIGYCSTYIFM---QTFMIPGTIFMSLLAGAL-----FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP----- 174 (251)
Q Consensus 108 ~l~fi~~~i~~---~~~~iPg~~~L~l~aG~l-----fG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~----- 174 (251)
..+|+.++.+. ...++|+++ +.+++|++ ++++...+.+.+|+.+|+.+.|++||++|++.+++..+
T Consensus 18 ~~~f~~~f~e~~l~~~~~lPge~-iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~ 96 (208)
T COG0586 18 LGVFLILFLESGLLVGPPLPGEV-LLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLK 96 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCCchH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCC
Confidence 45555656555 567899998 46888887 46788899999999999999999999999998876654
Q ss_pred -hhHHHHHHHHHHhccchHHHHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 025527 175 -EKLRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRRCVILVVK 250 (251)
Q Consensus 175 -~~l~~~~~~l~~~~~~~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~~~~ 250 (251)
++++|.+++++|| +...+++.|++|.++ ++++++||+++||+++|.+.+++|.+.|..++++.|+.+++.++
T Consensus 97 ~~~l~~a~~~f~r~---G~~~vf~~RFip~vR-t~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~ 169 (208)
T COG0586 97 RKKLDKAELLFERH---GLFAIFLGRFIPGVR-TLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVID 169 (208)
T ss_pred HHHHHHHHHHHHHc---CchhhhhhcccchhH-hhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 4678999999997 568999999999996 69999999999999999999999999999999999999986643
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.40 E-value=8.8e-12 Score=104.20 Aligned_cols=134 Identities=11% Similarity=0.138 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhhccccChHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhh---hhHHHHHH
Q 025527 108 IIGYCSTYIFMQTFMIPGTIFMSLLAGAL--FGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWP---EKLRFFQA 182 (251)
Q Consensus 108 ~l~fi~~~i~~~~~~iPg~~~L~l~aG~l--fG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~---~~l~~~~~ 182 (251)
..+|+..|+..+.+|+|.++++ ++..+ +.++.-.+++.+|+++|++++|++||+.++...++... ++.++.++
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l--~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~ 97 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLL--APMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQE 97 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHH--HHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHH
Confidence 5778889999999999999842 22222 67888899999999999999999999998887776442 34555554
Q ss_pred -HHHHhccchHHHHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025527 183 -EIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRRCVILV 248 (251)
Q Consensus 183 -~l~~~~~~~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~~ 248 (251)
+.+|+ +.+.+++.= +|.+| ++++++||..+++++.|++..++|.....++.+++....++.
T Consensus 98 ~~~~ry---g~~~ll~s~-lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~~ 159 (161)
T COG1238 98 KWYRRY---GVWTLLLSW-LPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGER 159 (161)
T ss_pred HHHHHH---HHHHHHHHh-ccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 45554 566666664 56689 999999999999999999999999999999999888766543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=96.11 E-value=0.1 Score=41.62 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHH-----Hhhhh---hhhHHHHHHHHHHhccchHHHHHHhhcccccc---
Q 025527 137 FGVIRGLILVVFNATAGASSCFFLSKLIGRPL-----VSWFW---PEKLRFFQAEIAKRREKLLNYMLFLRITPSLP--- 205 (251)
Q Consensus 137 fG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~-----~~~~~---~~~l~~~~~~l~~~~~~~~~~vl~~Rl~P~iP--- 205 (251)
++++..++++.+|+.+.....+++-+.+-+-. .++.. .+|.++-++.++|+ ++..+.+.=.+| +|
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~ky---g~~GL~lFVaIP-lP~TG 89 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKY---GFWGLALFVAIP-LPGTG 89 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHhCC-CCcch
Confidence 34678888999999888777776665543221 22221 23444556667765 455555554566 35
Q ss_pred hhhhhHhhhccCCChhHHHHHHHHhHHHHHH
Q 025527 206 NLFINLASPIVDIPFHIFFLATLIGLIPASY 236 (251)
Q Consensus 206 ~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~ 236 (251)
-+.-+++|-+.+++.++=+++..+|.+...+
T Consensus 90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 90 AWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999876653
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=90.96 E-value=15 Score=35.17 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHHHh
Q 025527 145 LVVFNATAGASSCFFLSKLIGRPLVS 170 (251)
Q Consensus 145 ~~~lgs~lGa~i~y~lgR~lGr~~~~ 170 (251)
+.++......+.+|+.||.+||..+.
T Consensus 273 ~~~~~vw~~Di~AY~~G~~fGk~kl~ 298 (403)
T PLN02953 273 ISFSGVIATDTFAFLGGKAFGRTPLT 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44555667899999999999987665
No 9
>PRK11677 hypothetical protein; Provisional
Probab=84.44 E-value=2.8 Score=34.20 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 143 LILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 143 ~l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
++++.+|-.+|.+++|+++|+..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 3567788889999999999986544
No 10
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=83.48 E-value=19 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025527 124 PGTIFMSLLAGALFGVIRGLILVVFNATAGASSC 157 (251)
Q Consensus 124 Pg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~ 157 (251)
|.+-+.++++|.+||||+|.+...+++.++.+..
T Consensus 32 ~~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 32 PVQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred ChhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 4444468999999999999999888888776653
No 11
>PRK01844 hypothetical protein; Provisional
Probab=82.26 E-value=3.5 Score=29.99 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhh
Q 025527 139 VIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172 (251)
Q Consensus 139 ~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~ 172 (251)
.|...++..++..+|.+++|+++|+..++.+++-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455667788899999999999998877766543
No 12
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=80.86 E-value=15 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=23.2
Q ss_pred ccccChHH-HHHHHHHHHHH--HHHHHHHHHHHHHHhHH
Q 025527 120 TFMIPGTI-FMSLLAGALFG--VIRGLILVVFNATAGAS 155 (251)
Q Consensus 120 ~~~iPg~~-~L~l~aG~lfG--~~~G~l~~~lgs~lGa~ 155 (251)
..|+|++- ....+.+.++| ....+....+|..++++
T Consensus 82 aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 82 AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 35788763 23445567776 46777777777777654
No 13
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=77.76 E-value=48 Score=29.08 Aligned_cols=80 Identities=16% Similarity=-0.009 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcH
Q 025527 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGR 166 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr 166 (251)
+.+++..+....+...-.+ +++.+.-.+......+.+..-..+-|-..|.+...+-+++|+++.=.++=..+|..-+
T Consensus 36 ~~l~~~i~~~g~~~pl~~f---il~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~ 112 (223)
T COG0398 36 ETLREWIQAYGALGPLVFF---ILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVL 112 (223)
T ss_pred HHHHHHHHHcCchHHHHHH---HHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6677777766666666532 2223333344444444444334555888899888888999999998888888886665
Q ss_pred HHH
Q 025527 167 PLV 169 (251)
Q Consensus 167 ~~~ 169 (251)
+.+
T Consensus 113 ~~~ 115 (223)
T COG0398 113 KFV 115 (223)
T ss_pred HHh
Confidence 443
No 14
>PRK00523 hypothetical protein; Provisional
Probab=76.05 E-value=13 Score=27.13 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 025527 141 RGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (251)
Q Consensus 141 ~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~ 171 (251)
..+++..++..+|.+.+|+++|+..++.+++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778899999999999887776654
No 15
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=72.91 E-value=21 Score=31.95 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 025527 143 LILVVFNATAGASSCFFLSKLIGRPLVSW 171 (251)
Q Consensus 143 ~l~~~lgs~lGa~i~y~lgR~lGr~~~~~ 171 (251)
.++..++...+.+.+|+.||.+|++.+..
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p 164 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAP 164 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCC
Confidence 45567788899999999999999986444
No 16
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=71.20 E-value=8.4 Score=30.89 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHH
Q 025527 145 LVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 145 ~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
++++|..+|.+++|+++|...+.
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhccc
Confidence 35678888899999999887655
No 17
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=69.24 E-value=62 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025527 126 TIFMSLLAGALFGVIRGLILVVFNATAGASSC 157 (251)
Q Consensus 126 ~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~ 157 (251)
.. ..+.+|.+||+..|++...+|..+++.+.
T Consensus 39 ~~-~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 39 SI-PIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hH-HHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 44 47888999999999999999988888754
No 18
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.52 E-value=26 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhh
Q 025527 140 IRGLILVVFNATAGASSCFFLSKLIGRPLVSW 171 (251)
Q Consensus 140 ~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~ 171 (251)
|.+.++..++-.+|...+|+++|..-.+.+.+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666777777788888899999876665543
No 19
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.55 E-value=8.4 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHHHhhh
Q 025527 145 LVVFNATAGASSCFFLSKLIGRPLVSWF 172 (251)
Q Consensus 145 ~~~lgs~lGa~i~y~lgR~lGr~~~~~~ 172 (251)
+..++..+|.+++|+++|+..++.+++-
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~N 29 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKEN 29 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3556777899999999998877766543
No 20
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=61.57 E-value=21 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025527 122 MIPGTIFMSLLAGALFGVIRGLILVVF 148 (251)
Q Consensus 122 ~iPg~~~L~l~aG~lfG~~~G~l~~~l 148 (251)
+.|.+-++++.+|.+.|||++...+.+
T Consensus 27 ~~P~QH~iNviaaVlLGP~ya~~~Af~ 53 (150)
T PF09512_consen 27 CFPMQHMINVIAAVLLGPWYAVAMAFI 53 (150)
T ss_pred cChHHHHHHHHHHHHhchHHHHHHHHH
Confidence 347776679999999999887665544
No 21
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=60.60 E-value=1.1e+02 Score=28.63 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHhcHHHHhhhhhhhHHHHHHHHHHh
Q 025527 147 VFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEIAKR 187 (251)
Q Consensus 147 ~lgs~lGa~i~y~lgR~lGr~~~~~~~~~~l~~~~~~l~~~ 187 (251)
.+.+.+||.+.|+++-++++.... .++++++++.|.
T Consensus 41 ~v~~ligai~~~li~~~~~~~~~~-----~~~~le~~i~k~ 76 (356)
T COG4956 41 YVDALIGAIIFFLISFWFGKYVLN-----WLKRLEEQIRKL 76 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 344677888888887776654433 234555555543
No 22
>PRK09609 hypothetical protein; Provisional
Probab=58.85 E-value=53 Score=30.55 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=5.1
Q ss_pred HHHHHHHhHHHH
Q 025527 223 FFLATLIGLIPA 234 (251)
Q Consensus 223 F~l~t~iG~lP~ 234 (251)
|+..+..|..-.
T Consensus 210 ~~~l~~~G~~~m 221 (312)
T PRK09609 210 LMILIISGFILM 221 (312)
T ss_pred HHHHHHHHHHHH
Confidence 334444454433
No 23
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=57.56 E-value=39 Score=30.75 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHHHHhhhh
Q 025527 143 LILVVFNATAGASSCFFLSKLIGRPLVSWFW 173 (251)
Q Consensus 143 ~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~ 173 (251)
.++..+..-.+.+.+|+.||.+||+.+-...
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~I 184 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKV 184 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Confidence 3444455667899999999999987665444
No 24
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=57.49 E-value=91 Score=26.80 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 142 GLILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 142 G~l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
-.+...+....|...+|+.||++||.
T Consensus 131 ~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 131 LALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567777889999999999999988
No 25
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=57.44 E-value=43 Score=26.65 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHhcHHHH
Q 025527 131 LLAGALFGVIRG--LILVVFNATAGASSCFFLSKLIGRPLV 169 (251)
Q Consensus 131 l~aG~lfG~~~G--~l~~~lgs~lGa~i~y~lgR~lGr~~~ 169 (251)
++.|++.|...+ -..+.+++.+|-.++|++.|++.++.-
T Consensus 82 li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~ 122 (135)
T PF04246_consen 82 LIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLK 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444443333 567788888999999999998866543
No 26
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.32 E-value=40 Score=27.39 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 142 GLILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 142 G~l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
...++.+|-++|-+++|++.|..-+.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 34577788889999999999976544
No 27
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=56.60 E-value=6.8 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=23.0
Q ss_pred ChhhhcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 025527 33 SPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYL 70 (251)
Q Consensus 33 ~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~l~~~~~ 70 (251)
.|+..+.+..++|++-| ++.+.+|+++-.+++=+.+
T Consensus 24 v~~~~k~k~~k~pVgp~--~L~l~iFVV~Gs~ifqiir 59 (63)
T PF06624_consen 24 VPKSLKKKEKKYPVGPW--LLGLFIFVVCGSAIFQIIR 59 (63)
T ss_pred CccccccccccCCcCHH--HHhhhheeeEcHHHHHHHH
Confidence 34444445678999999 6666667766666555544
No 28
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=55.63 E-value=1e+02 Score=24.51 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=5.5
Q ss_pred HHHHHHHHHh
Q 025527 178 RFFQAEIAKR 187 (251)
Q Consensus 178 ~~~~~~l~~~ 187 (251)
++++.+++++
T Consensus 87 r~l~~~l~~~ 96 (121)
T PF11990_consen 87 RRLQWRLARR 96 (121)
T ss_pred HHHHHHHHHh
Confidence 4555555554
No 29
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=53.93 E-value=93 Score=23.44 Aligned_cols=39 Identities=28% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhh
Q 025527 135 ALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFW 173 (251)
Q Consensus 135 ~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~ 173 (251)
..-|...|.....+.+.+|++++-.+...+||...++..
T Consensus 8 ~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~ 46 (123)
T PF09335_consen 8 IAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRL 46 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345667778888888888888888888888877665433
No 30
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=52.31 E-value=61 Score=24.50 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=18.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 025527 42 ERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71 (251)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~l~~~~~~ 71 (251)
...|-++|-....++++++-++=++..|..
T Consensus 25 ~~~~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 25 KAGPSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778897667776666444444444443
No 31
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=52.05 E-value=52 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=11.5
Q ss_pred CCCcccHHHHHHHHHHHH
Q 025527 43 RFPLTHWEFAAFVGVFLL 60 (251)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~ 60 (251)
..|-++|-.-..++++++
T Consensus 26 ~~~sp~W~~p~m~~lmll 43 (87)
T PF06781_consen 26 AKPSPRWYAPLMLGLMLL 43 (87)
T ss_pred CCCCCccHHHHHHHHHHH
Confidence 377888966556655553
No 32
>PRK13661 hypothetical protein; Provisional
Probab=49.77 E-value=30 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025527 125 GTIFMSLLAGALFGVIRGLILVVFNATAGASS 156 (251)
Q Consensus 125 g~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i 156 (251)
++. ..++.+.+||+..|++...+|..++..+
T Consensus 40 ~~~-~i~l~a~lfGp~~G~lvg~ig~~L~dll 70 (182)
T PRK13661 40 AYA-FLALFAVLFGPVVGFLVGFIGHALKDFI 70 (182)
T ss_pred HHH-HHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 445 3577789999999999888888887776
No 33
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=49.64 E-value=58 Score=26.99 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 144 ILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 144 l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
.++.+++.+|...+|++.|.+-|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999887544
No 34
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.28 E-value=1.1e+02 Score=21.03 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHH
Q 025527 175 EKLRFFQAEIAK 186 (251)
Q Consensus 175 ~~l~~~~~~l~~ 186 (251)
+++++.++.+++
T Consensus 55 k~l~~le~e~~~ 66 (68)
T PF06305_consen 55 KELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHh
Confidence 445555555543
No 35
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=43.06 E-value=2.9e+02 Score=26.02 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=25.4
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 121 ~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
+.+||.+++...-..++|. .-..++...+.+-.|++.|-+|=+
T Consensus 163 lGvPG~~lLiy~i~~l~~~----~~~a~~~i~~~iG~yll~kGfgld 205 (344)
T PF04123_consen 163 LGVPGLILLIYAILALLGY----PAYALGIILLLIGLYLLYKGFGLD 205 (344)
T ss_pred ecchHHHHHHHHHHHHHcc----hHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3489766443333455555 233345555666678888888744
No 36
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=39.40 E-value=51 Score=23.11 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=21.5
Q ss_pred hhhcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 025527 35 TAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFCIYLT 71 (251)
Q Consensus 35 ~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~l~~~~~~ 71 (251)
+..+.+.+++|..-| ++.+-+|+++-.+++-+.++
T Consensus 26 kt~~~~e~kypvgPw--LlglFvFVVcGSa~FqIIr~ 60 (65)
T KOG3491|consen 26 KTTTKKEKKYPVGPW--LLGLFVFVVCGSALFQIIRT 60 (65)
T ss_pred ccccCccccCCcchH--HHHHHHHHhhcHHHHHHHHH
Confidence 333445678999999 55555566655556555443
No 37
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.99 E-value=2e+02 Score=22.66 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 025527 177 LRFFQAEIAKR 187 (251)
Q Consensus 177 l~~~~~~l~~~ 187 (251)
.++++...+++
T Consensus 83 ~r~l~~~~~~~ 93 (111)
T TIGR03750 83 YRKLEWKLARL 93 (111)
T ss_pred HHHHHHHHHHc
Confidence 34555555543
No 38
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.90 E-value=61 Score=26.99 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhhhHHH
Q 025527 130 SLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRF 179 (251)
Q Consensus 130 ~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~~~l~~ 179 (251)
.++.|-+|++.++.++..+-+++ ++.+++.+++ .+.+.+.+.+|-++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~i~Fl--il~~lL~~~l-~kpi~~~l~~R~~~ 53 (175)
T PRK14472 7 ILLSGGLLSPNPGLIFWTAVTFV--IVLLILKKIA-WGPILSALEEREKG 53 (175)
T ss_pred hhhcCCccCCCHHHHHHHHHHHH--HHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 35555577776655433333222 3333344444 44444455444333
No 39
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=35.65 E-value=33 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025527 129 MSLLAGALFGVIRGLILVVFNATAGASS 156 (251)
Q Consensus 129 L~l~aG~lfG~~~G~l~~~lgs~lGa~i 156 (251)
..+++|+++||+.|.+...+...++..+
T Consensus 34 ~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 34 PIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888777766665554
No 40
>PLN02594 phosphatidate cytidylyltransferase
Probab=34.84 E-value=2.5e+02 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhcHHHHhhhhhh
Q 025527 145 LVVFNATAGASSCFFLSKLIGRPLVSWFWPE 175 (251)
Q Consensus 145 ~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~~ 175 (251)
+.........+.+|+.||.+||..+-+.-|+
T Consensus 129 l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPk 159 (342)
T PLN02594 129 LPASLIVINDIAAYLFGFFFGRTPLIKLSPK 159 (342)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCCccCCC
Confidence 3444566789999999999999865544343
No 41
>COG4732 Predicted membrane protein [Function unknown]
Probab=34.63 E-value=58 Score=27.32 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=23.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025527 122 MIPGTIFMSLLAGALFGVIRGLILVVFNA 150 (251)
Q Consensus 122 ~iPg~~~L~l~aG~lfG~~~G~l~~~lgs 150 (251)
+.|.+-+.+.++|...|||++...+.+-+
T Consensus 36 aaP~qh~VNvlAgV~~GPwyala~A~~~s 64 (177)
T COG4732 36 AAPMQHFVNVLAGVMMGPWYALAMALVTS 64 (177)
T ss_pred cCcHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 45777778999999999999987666543
No 42
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=33.80 E-value=58 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025527 129 MSLLAGALFGVIRGLILVVFNATAG 153 (251)
Q Consensus 129 L~l~aG~lfG~~~G~l~~~lgs~lG 153 (251)
...++|++|||++|.+...++-.+|
T Consensus 101 pi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 101 LVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4677899999999999999888888
No 43
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=33.46 E-value=83 Score=20.27 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHH
Q 025527 42 ERFPLTHWEFAAFVGVFLLFVTGL 65 (251)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~l 65 (251)
+|-|| |.+..+.++.++.++++
T Consensus 6 GRIPL--WlVgtv~G~~vi~lvgl 27 (40)
T PF01788_consen 6 GRIPL--WLVGTVAGIAVIGLVGL 27 (40)
T ss_dssp TSS-H--HHHHHHHHHHHHHHHHH
T ss_pred Ccccc--hHHHHHHHHHHHHHHHH
Confidence 57777 86555555554444443
No 44
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=32.59 E-value=2.3e+02 Score=21.71 Aligned_cols=27 Identities=7% Similarity=-0.130 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 025527 138 GVIRGLILVVFNATAGASSCFFLSKLI 164 (251)
Q Consensus 138 G~~~G~l~~~lgs~lGa~i~y~lgR~l 164 (251)
++|.+++++.....+.+.++++.++.-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777766653
No 45
>COG1238 Predicted membrane protein [Function unknown]
Probab=32.31 E-value=92 Score=26.10 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=40.7
Q ss_pred hcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 025527 199 RITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRPRRCVILVVK 250 (251)
Q Consensus 199 Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~~~~ 250 (251)
=++| +|.++.=...-..+.+.+.+...+.+|...+..+--++|+.+.+.+.
T Consensus 31 t~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~ 81 (161)
T COG1238 31 TLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIA 81 (161)
T ss_pred HhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHH
Confidence 3557 56666655566666899999999999999999999999998887654
No 46
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=31.96 E-value=2.6e+02 Score=23.24 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHhCChhHHHHHHHHHHhh------hccccChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHH
Q 025527 89 LRLLKDNLATYAQDYPVPFIIGYCSTYIFM------QTFMIPGTIFMSLLAGALFGVIRGLILVVFNA-----TAGASSC 157 (251)
Q Consensus 89 l~~l~~~l~~~~~~~~~~~~l~fi~~~i~~------~~~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs-----~lGa~i~ 157 (251)
.|+..+.+...--..+|.....|+ .-++. +.+.+||+.+=.+++|++|-...-...+++|. .+|+.++
T Consensus 30 ~QH~iNviaaVlLGP~ya~~~Af~-~sliR~~lg~Gt~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~s 108 (150)
T PF09512_consen 30 MQHMINVIAAVLLGPWYAVAMAFI-TSLIRNLLGTGTLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLS 108 (150)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHhCCCCHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHH
Confidence 566666666544333322223332 22232 23467888755667788876544434444443 3566777
Q ss_pred HHHHHHh
Q 025527 158 FFLSKLI 164 (251)
Q Consensus 158 y~lgR~l 164 (251)
|-+.+++
T Consensus 109 ypva~~~ 115 (150)
T PF09512_consen 109 YPVAKLF 115 (150)
T ss_pred HHHHHHH
Confidence 7666654
No 47
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=31.79 E-value=3.3e+02 Score=24.13 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhc
Q 025527 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCF-FLSKLIG 165 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y-~lgR~lG 165 (251)
+..+++.+..+--..+.+...+++. + .+..|.. +.++.|+++|.|+ ....+|..+|.+++. .++|+.-
T Consensus 8 ~~~~Qi~q~y~~trk~dp~l~~~ml-~------a~l~~~~--v~v~ig~l~~~~~--~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 8 GRRKQIWQAYKMTRKEDPKLPWLML-G------AFLGPIA--VFVLIGLLFGSWW--YWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred hHHHHHHHHHHHHHHHCcchHHHHH-H------HHHHHHH--HHHHHHHHHccHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665666665433221 1 2233433 2456678877543 334445555655554 3566654
Q ss_pred HH
Q 025527 166 RP 167 (251)
Q Consensus 166 r~ 167 (251)
+.
T Consensus 77 ra 78 (224)
T PF13829_consen 77 RA 78 (224)
T ss_pred HH
Confidence 33
No 48
>PHA02819 hypothetical protein; Provisional
Probab=31.74 E-value=96 Score=22.49 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=3.8
Q ss_pred CCCChhh
Q 025527 30 GDESPTA 36 (251)
Q Consensus 30 ~~~~~~~ 36 (251)
+|+||++
T Consensus 32 td~s~~~ 38 (71)
T PHA02819 32 NNENYNK 38 (71)
T ss_pred cCCCCcc
Confidence 4555555
No 49
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=30.79 E-value=1.2e+02 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcHH
Q 025527 144 ILVVFNATAGASSCFFLSKLIGRP 167 (251)
Q Consensus 144 l~~~lgs~lGa~i~y~lgR~lGr~ 167 (251)
..+.+++.+|-.++|++.|++.++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888888876544
No 50
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=30.34 E-value=3.4e+02 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.055 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhcHHHH
Q 025527 154 ASSCFFLSKLIGRPLV 169 (251)
Q Consensus 154 a~i~y~lgR~lGr~~~ 169 (251)
.+++|+.+|.-+++..
T Consensus 194 ~~lG~~~a~~s~~~~~ 209 (234)
T cd02433 194 LATGAVTGLLSGRSPG 209 (234)
T ss_pred HHHHHHHHhhCCCcHH
Confidence 3455556665555544
No 51
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=30.14 E-value=3.7e+02 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=16.6
Q ss_pred hhcccccchhhhhHhhhccCCC
Q 025527 198 LRITPSLPNLFINLASPIVDIP 219 (251)
Q Consensus 198 ~Rl~P~iP~~lvn~~aGi~~v~ 219 (251)
.|++|..-.++-|+-++.+++|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 4677777778888777777777
No 52
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=30.05 E-value=3.7e+02 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025527 131 LLAGALFGVIRGLILVVFNATAGASSCFF 159 (251)
Q Consensus 131 l~aG~lfG~~~G~l~~~lgs~lGa~i~y~ 159 (251)
.++|..+|.+.-.++..-|..+|+.+.+.
T Consensus 88 ~~g~~~lGl~~il~l~fNG~ivG~~~~~~ 116 (207)
T COG1300 88 IAGGLTLGLPTILVLLFNGFIVGFFVGLV 116 (207)
T ss_pred HHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 33344444333333333344444444443
No 53
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=29.85 E-value=36 Score=32.63 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred HHHHHhHHHHHHHHHHhc---H---H-HHh---h-------hhhhhHHHHHHHHHHhcc-chHHHHHHhhcccccchhhh
Q 025527 148 FNATAGASSCFFLSKLIG---R---P-LVS---W-------FWPEKLRFFQAEIAKRRE-KLLNYMLFLRITPSLPNLFI 209 (251)
Q Consensus 148 lgs~lGa~i~y~lgR~lG---r---~-~~~---~-------~~~~~l~~~~~~l~~~~~-~~~~~vl~~Rl~P~iP~~lv 209 (251)
.|.++|-+-.|+.+|--- . + ... . ...++.++.+-++.++-+ -+|..+++.--+|--=+++.
T Consensus 217 ~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdla 296 (440)
T KOG1109|consen 217 AGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDLA 296 (440)
T ss_pred cccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhhc
Confidence 588899999999988521 1 0 000 0 011234455555555422 24555665555663237888
Q ss_pred hHhhhccCCChhHHHHHHHHhHHH
Q 025527 210 NLASPIVDIPFHIFFLATLIGLIP 233 (251)
Q Consensus 210 n~~aGi~~v~~~~F~l~t~iG~lP 233 (251)
-.-+|...+|||.|+.+|++|...
T Consensus 297 Gitcghflvpfw~ffGaTLigKai 320 (440)
T KOG1109|consen 297 GITCGHFLVPFWTFFGATLIGKAI 320 (440)
T ss_pred ccccccccchHHHHhhHHHHHHHH
Confidence 888999999999999999999854
No 54
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=28.64 E-value=3.8e+02 Score=22.98 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccChH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 025527 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGT-IFMSLLAGAL-FGVIRGLILVVFNATAGASSCFFLSKLI 164 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iPg~-~~L~l~aG~l-fG~~~G~l~~~lgs~lGa~i~y~lgR~l 164 (251)
+++++-++++++|+.. .+|+ .=++|+. .+..+.+|.. ..+..=.+++.+|+.+=+.+..++|..+
T Consensus 98 ~~l~~a~~~f~r~G~~------~vf~-------~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~ 164 (208)
T COG0586 98 KKLDKAELLFERHGLF------AIFL-------GRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLL 164 (208)
T ss_pred HHHHHHHHHHHHcCch------hhhh-------hcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777765532 2222 2245553 2356777876 5566666788999999999999999998
Q ss_pred cHHH
Q 025527 165 GRPL 168 (251)
Q Consensus 165 Gr~~ 168 (251)
|+..
T Consensus 165 G~~~ 168 (208)
T COG0586 165 GEVI 168 (208)
T ss_pred ccch
Confidence 8654
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.49 E-value=1.1e+02 Score=24.41 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025527 134 GALFGVIRGLILVVFNATAGASSCFFLSKL 163 (251)
Q Consensus 134 G~lfG~~~G~l~~~lgs~lGa~i~y~lgR~ 163 (251)
|.+||...|++..+ .++.|++.|+
T Consensus 68 ~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 68 GIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred ehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 44555554443322 3667777655
No 56
>COG3694 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=28.15 E-value=4.5e+02 Score=23.76 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=61.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccccccCCcHHHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhc
Q 025527 42 ERFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPA-ADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQT 120 (251)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~l~~~~~~~P~-~~~~~~~lp~~l~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~ 120 (251)
.+-+++-|+++..++..+...+-+.++|..... +-| ....+...+....+.+-.-+. .-+|-..+=..-+
T Consensus 135 ~~i~~tp~~ill~i~~~l~g~li~ysl~~~l~s~afW--------fvk~~~~~~i~~g~~~~~~yP-msiYp~~lR~~~t 205 (260)
T COG3694 135 KSIVLTPTKILLFIGLLLFGTLILYSLWFALGSTAFW--------FVKIYAVTEIFYGFLEAGRYP-MSIYPAILRKFFT 205 (260)
T ss_pred cccccCHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhccCC-hhhhhHHHHHHHH
Confidence 347788888888777776666667777765543 223 122333333333333222221 2233333222233
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhh
Q 025527 121 FMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWF 172 (251)
Q Consensus 121 ~~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~ 172 (251)
+.||....-..-+-++.|- .-+.-.+++.+-+.++|.+++++-+.-++++
T Consensus 206 FIIP~af~t~~Pa~~vlgr--~~~~~~i~~~~~a~~~f~ls~~fW~~glr~Y 255 (260)
T COG3694 206 FIIPVAFLTYVPALYVLGR--LDPEWAIGSLLAALLLFTLSLKFWKKGLRRY 255 (260)
T ss_pred HHHHHHHHhhccHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455432111111122221 2233345577788999999999877777665
No 57
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=27.79 E-value=4.8e+02 Score=23.98 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccChHHHHHHHHHHH-----HHHHHHHH
Q 025527 89 LRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGAL-----FGVIRGLI 144 (251)
Q Consensus 89 l~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iPg~~~L~l~aG~l-----fG~~~G~l 144 (251)
+++..+.+.+|....-....+..+..++....+-+|....+.+.+|.+ +|+..|.+
T Consensus 186 l~~~~~~~~~Y~~g~~i~~~i~gv~~~i~l~ilgv~~alllgil~glln~IPyiG~~i~~i 246 (344)
T PRK12287 186 IQRALDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAI 246 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhcchhHHHHHH
Confidence 344444566665544333444455555556666788877666776665 45544443
No 58
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=27.62 E-value=4.3e+02 Score=23.38 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccCCcHHHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhh--------ccccChH--
Q 025527 57 VFLLFVTGLFCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQ--------TFMIPGT-- 126 (251)
Q Consensus 57 ~~~~~~~~l~~~~~~~P~~~~~~~~lp~~l~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~--------~~~iPg~-- 126 (251)
..++.+-....+|.++|+.+-..-.+|-.+.|...+...+.-...+.....++.|-.+-+-.+ ....|-.
T Consensus 47 ~~lLg~~lg~~lw~~~~dg~tvrqslPfhlsda~~ilsaimlitrsrilf~~lyfwgig~sf~AlltPDl~~~~~p~l~~ 126 (236)
T COG5522 47 WVLLGATLGSNLWNFMPDGYTVRQSLPFHLSDALRILSAIMLITRSRILFSVLYFWGIGISFMALLTPDLQYLQVPWLEF 126 (236)
T ss_pred HHHHHHHHHHHHHhhccCceeHhhcCCcccchHHHHHHHHHHHhcchHhhhhHHHhhhhHHHHHHHcCccccccchHHHH
Confidence 333334445568899998765456788888888877777765554432222221111110111 1122211
Q ss_pred ---------HHHHHH-HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHhcHHHH
Q 025527 127 ---------IFMSLL-AGALFG---VIRGLILVVFNATAGASSCFFLSKLIGRPLV 169 (251)
Q Consensus 127 ---------~~L~l~-aG~lfG---~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~ 169 (251)
++++.. .-..|+ ...|+.++.++..+=+.+||++-|++|....
T Consensus 127 ~lffitH~svfls~v~~~vhfreRpgksgl~~svl~~~~lg~~~lfinrrLGtNYl 182 (236)
T COG5522 127 LLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLVAISLGIMCLFINRRLGTNYL 182 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 110000 001121 2457778888888888999999999997653
No 59
>PRK10847 hypothetical protein; Provisional
Probab=27.31 E-value=2.4e+02 Score=24.38 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.2
Q ss_pred ccccchhhhhHhhhcc------CCChhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025527 201 TPSLPNLFINLASPIV------DIPFHIFFLATLIGLIPASYITVRPRRCVIL 247 (251)
Q Consensus 201 ~P~iP~~lvn~~aGi~------~v~~~~F~l~t~iG~lP~~~l~~~~G~~l~~ 247 (251)
.|++|.+.+-.++|.. .++++.-++.+.+|......+.-++|+..++
T Consensus 46 ~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~ 98 (219)
T PRK10847 46 TPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGE 98 (219)
T ss_pred CCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4778987777777743 2667776788889999999999999987653
No 60
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=27.20 E-value=4.2e+02 Score=23.11 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcHHHH
Q 025527 154 ASSCFFLSKLIGRPLV 169 (251)
Q Consensus 154 a~i~y~lgR~lGr~~~ 169 (251)
.+++|..++.-+++..
T Consensus 185 ~~~G~~~~~~~~~~~~ 200 (225)
T cd02434 185 FLLGSFKSKLYNGKWI 200 (225)
T ss_pred HHHHHHHHHhcCCchH
Confidence 3355555655555443
No 61
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=27.05 E-value=4.8e+02 Score=23.66 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHcC
Q 025527 48 HWEFAAFVGVFLLFVTGLFC-IYLTMP 73 (251)
Q Consensus 48 ~w~~~~~~~~~~~~~~~l~~-~~~~~P 73 (251)
.|+.+.-++..+++...+.. +.-+.|
T Consensus 184 ~~~~~~~v~~~lliG~~iaa~i~~~iP 210 (307)
T PF03773_consen 184 FWDEFKMVGPYLLIGVFIAALIQAFIP 210 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35554444443333333333 233445
No 62
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=26.75 E-value=1.1e+02 Score=22.15 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 025527 134 GALFGVIRGLILVVFNATAGASS 156 (251)
Q Consensus 134 G~lfG~~~G~l~~~lgs~lGa~i 156 (251)
|.+||...|.+++.+-..+++.+
T Consensus 51 GILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 51 GILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899989988888877776653
No 63
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=26.55 E-value=2.3e+02 Score=22.73 Aligned_cols=38 Identities=8% Similarity=0.136 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcHHHHhhhhhh
Q 025527 138 GVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPE 175 (251)
Q Consensus 138 G~~~G~l~~~lgs~lGa~i~y~lgR~lGr~~~~~~~~~ 175 (251)
|+..|+..+.+++.+.++..|..-++...+..++....
T Consensus 66 a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~ 103 (163)
T PF13858_consen 66 AFKVGFLISLIAGLISAVFQYIYFNYIDPDFFENYIEA 103 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45678888999999999999999999998888877643
No 64
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=25.93 E-value=1.5e+02 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 025527 47 THWEFAAFVGVFLLFVTGL 65 (251)
Q Consensus 47 ~~w~~~~~~~~~~~~~~~l 65 (251)
..|..++...+++++++-+
T Consensus 46 ~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLL 64 (72)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4554454444444444433
No 65
>PF14163 SieB: Superinfection exclusion protein B
Probab=25.82 E-value=3.2e+02 Score=21.96 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=19.2
Q ss_pred hccccChHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 025527 119 QTFMIPGTIFMSLLAG----ALFGVIRGLILVVFNATA 152 (251)
Q Consensus 119 ~~~~iPg~~~L~l~aG----~lfG~~~G~l~~~lgs~l 152 (251)
..+..|-+. +..+.- ..+++|.|.++....+.+
T Consensus 11 ~llf~P~~~-~~~l~l~~~~~~y~~~i~~~fl~s~s~l 47 (151)
T PF14163_consen 11 LLLFLPESL-LEWLNLDKFEIKYQPWIGLIFLFSVSYL 47 (151)
T ss_pred HHHHCCHHH-HHHhCcchHHHhcchHHHHHHHHHHHHH
Confidence 344778775 444432 357888887665544433
No 66
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=25.50 E-value=3e+02 Score=20.78 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 025527 43 RFPLTHWEFAAFVGVFLLFVTGLFCIYL 70 (251)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~l~~~~~ 70 (251)
..|-++|-....++++++-++=++..|.
T Consensus 27 ~~~sP~W~~~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 27 TKSNPRWFVPLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 4677889766677666644444444444
No 67
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=24.27 E-value=1.9e+02 Score=23.13 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=16.3
Q ss_pred CChhhhcccCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 025527 32 ESPTAKRFKSERFPLTHWEFAAFVGVFLLFVTGLFC 67 (251)
Q Consensus 32 ~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~l~~ 67 (251)
+++++..+ |-|..+--...++++|.++++++..
T Consensus 37 ~~~~~s~t---r~P~k~i~lavvL~~fg~Lli~lg~ 69 (124)
T KOG4753|consen 37 YSYKVSNT---RHPVKEIALAVVLLVFGLLLIGLGF 69 (124)
T ss_pred cccccCCC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45554433 6777554444445445444444333
No 68
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.84 E-value=4.8e+02 Score=25.99 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hcHHHHhhhh------hhhHH--HHHHHHHHhc---------------cchHH
Q 025527 139 VIRGLILVVFNATAGASSCFFLSKL--IGRPLVSWFW------PEKLR--FFQAEIAKRR---------------EKLLN 193 (251)
Q Consensus 139 ~~~G~l~~~lgs~lGa~i~y~lgR~--lGr~~~~~~~------~~~l~--~~~~~l~~~~---------------~~~~~ 193 (251)
.+.++..+.++..+|-.++|++.|+ -||+.+++.. |.-.. -+...+.+++ -+++.
T Consensus 62 l~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G~~~~l~~~~G~~~~~iyg~~ 141 (540)
T COG1178 62 LILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELLGFESPSIYGLG 141 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhHHHHHHHHHHHHCCCcHHHHHHHHhcCCCcccccHH
Confidence 4556666667777788888888887 6777776654 11111 0111111111 12334
Q ss_pred HHHHhhcccccchhhhhHhhhccCCChhHHHHHHHHhHHHHHHH
Q 025527 194 YMLFLRITPSLPNLFINLASPIVDIPFHIFFLATLIGLIPASYI 237 (251)
Q Consensus 194 ~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~l~t~iG~lP~~~l 237 (251)
.+++.-.+=..|+......++..+++....=.+-.+|.-|+...
T Consensus 142 Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F 185 (540)
T COG1178 142 GILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVF 185 (540)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhCChhHHHHHHHcCCChhhHH
Confidence 44444444456677777777777777666666666665555443
No 69
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.29 E-value=1.3e+02 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcHHHHh
Q 025527 143 LILVVFNATAGASSCFFLSKLIGRPLVS 170 (251)
Q Consensus 143 ~l~~~lgs~lGa~i~y~lgR~lGr~~~~ 170 (251)
+++++++..+|..++|++.+...+..+.
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~~ 30 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKLE 30 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888887777665443
No 70
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=21.97 E-value=6.3e+02 Score=23.25 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHhc
Q 025527 150 ATAGASSCFFLSKLIG 165 (251)
Q Consensus 150 s~lGa~i~y~lgR~lG 165 (251)
..+|..++..+-|-+|
T Consensus 118 ~~vG~~v~~~~vRELg 133 (292)
T PLN03100 118 RSIGGVLALAFSRELS 133 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555555
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.41 E-value=83 Score=24.94 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=3.9
Q ss_pred cHHHHHHH
Q 025527 48 HWEFAAFV 55 (251)
Q Consensus 48 ~w~~~~~~ 55 (251)
||-+++++
T Consensus 1 RW~l~~ii 8 (130)
T PF12273_consen 1 RWVLFAII 8 (130)
T ss_pred CeeeHHHH
Confidence 57444433
No 72
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=20.55 E-value=3.3e+02 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=18.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025527 122 MIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSC 157 (251)
Q Consensus 122 ~iPg~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~ 157 (251)
.+|.+-++.++.++..|.+.|.. ++|..+|..++
T Consensus 17 g~t~DE~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 17 GLPLDEFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred EeeHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 44555444455566666666643 35555555544
No 73
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=20.49 E-value=6.4e+02 Score=22.75 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH--hcHHHHhhhh------hhhHH--HHHHHHHHh-ccchHHHHHHhhcccccch
Q 025527 138 GVIRGLILVVFNATAGASSCFFLSKL--IGRPLVSWFW------PEKLR--FFQAEIAKR-REKLLNYMLFLRITPSLPN 206 (251)
Q Consensus 138 G~~~G~l~~~lgs~lGa~i~y~lgR~--lGr~~~~~~~------~~~l~--~~~~~l~~~-~~~~~~~vl~~Rl~P~iP~ 206 (251)
....|++.+.++..+|-..+|.+.|+ -||..++... |+-.- -+-..+..- -+++++.++++-.+-.+|+
T Consensus 70 Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~~~lP~ 149 (267)
T COG1177 70 SLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIVFALPF 149 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhH
Confidence 33456666777788888888888885 3344444332 22111 111112211 2357889999999988999
Q ss_pred hhhhHhhhccCCChhHHHHHHHHhH
Q 025527 207 LFINLASPIVDIPFHIFFLATLIGL 231 (251)
Q Consensus 207 ~lvn~~aGi~~v~~~~F~l~t~iG~ 231 (251)
.+++..+.+.+++..-==.+--+|.
T Consensus 150 v~~~v~a~l~~~d~~LeeAA~dLGA 174 (267)
T COG1177 150 VVVVVSARLQGFDRSLEEAARDLGA 174 (267)
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9998888888887733333333443
No 74
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=20.42 E-value=1.3e+02 Score=30.83 Aligned_cols=54 Identities=17% Similarity=0.526 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHhCChhHHHHHHHHHHhhhc----cccChHHHH-HHHHHHHHHHHHHHH
Q 025527 91 LLKDNLATYAQDYPVPFIIGYCSTYIFMQT----FMIPGTIFM-SLLAGALFGVIRGLI 144 (251)
Q Consensus 91 ~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~----~~iPg~~~L-~l~aG~lfG~~~G~l 144 (251)
.+++.+++=..++....+.+|.++|-++.. +.+|.-+|+ .++.|+.||-..|.+
T Consensus 435 aVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~ 493 (762)
T KOG0474|consen 435 AVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGML 493 (762)
T ss_pred HHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHH
Confidence 444444443334445567777777755543 356765432 566788887666654
No 75
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.33 E-value=1.8e+02 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=24.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 025527 43 RFPLTHWEFAAFVGVFLLFVTGLFCIYLTMPA 74 (251)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~l~~~~~~~P~ 74 (251)
++..+.|.++.++.+++++++++..+.|..-.
T Consensus 174 ~~~~~~W~i~~~~~i~~i~~i~i~~irR~i~l 205 (215)
T PHA02947 174 PYSNKPWFIVGVVIILIIFVIAICSIKRKINL 205 (215)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 34556899998888888888888888876643
Done!