Query 025527
Match_columns 251
No_of_seqs 284 out of 1444
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_J Photosystem II reaction 32.4 65 0.0022 19.8 3.8 23 42-66 6-28 (40)
2 4ezc_A UREA transporter 1; mem 24.4 2.6E+02 0.0088 25.4 8.1 72 87-167 35-108 (384)
3 3o7q_A L-fucose-proton symport 23.6 2E+02 0.0069 24.6 7.2 22 147-168 305-326 (438)
4 3p5n_A RIBU, riboflavin uptake 22.7 1E+02 0.0036 24.7 4.7 28 129-156 50-77 (189)
5 2hfr_A Fowlicidin-3, cathelici 20.2 38 0.0013 18.7 1.0 18 199-216 2-19 (27)
6 4dve_A Biotin transporter BIOY 17.8 4.1E+02 0.014 21.7 7.8 26 122-147 45-72 (198)
7 4gc0_A D-xylose-proton symport 16.8 1.1E+02 0.0037 27.0 3.9 27 61-93 452-478 (491)
8 2lbg_A Major prion protein; co 11.7 2.1E+02 0.0071 16.0 2.6 18 147-164 8-25 (27)
9 2v50_A Multidrug resistance pr 10.9 9.6E+02 0.033 24.2 9.4 16 219-234 466-481 (1052)
10 2ls4_A High affinity copper up 11.3 79 0.0027 17.6 0.0 16 146-161 5-20 (26)
No 1
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=32.41 E-value=65 Score=19.82 Aligned_cols=23 Identities=39% Similarity=0.865 Sum_probs=14.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHH
Q 025527 42 ERFPLTHWEFAAFVGVFLLFVTGLF 66 (251)
Q Consensus 42 ~~~~l~~w~~~~~~~~~~~~~~~l~ 66 (251)
+|-|| |.+-.+.++.++.+++++
T Consensus 6 GRiPL--Wlvgtv~G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPL--WIVATVAGMGVIVIVGLF 28 (40)
T ss_dssp TSSCH--HHHHHHHHHHHHHHHHHH
T ss_pred CcccE--EeeeeehhhhhhheeeEE
Confidence 57787 866666665554444443
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=24.35 E-value=2.6e+02 Score=25.45 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 025527 87 ADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIP--GTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLI 164 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iP--g~~~L~l~aG~lfG~~~G~l~~~lgs~lGa~i~y~lgR~l 164 (251)
.|.+++.+|+++ ++...-.+=.++--+.|.+..+ .+- +.++.|..++-++-.+.+.+|+.+ +...++.+
T Consensus 35 g~~~~~~~~~~~----~~~~~~~i~~~LrG~gQV~f~~n~lsG-lliLigl~i~sp~~al~allG~~v----stltA~ll 105 (384)
T 4ezc_A 35 GDMKEFANWLKD----KPQALQFVDWVLRGISQVVFVSNPISG-ILILVGLLVQNPWCALNGCVGTVV----STLTALLL 105 (384)
T ss_dssp TTCHHHHHHHHT----SCHHHHHHHHHHHHHHGGGTCCCHHHH-HHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHT
T ss_pred CchHHHHHHHhc----CCcHHHHHHHHhcCceEEEecCCcHHH-HHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHh
Confidence 577777777765 3321111111222346666664 333 345566666655544555555444 44455555
Q ss_pred cHH
Q 025527 165 GRP 167 (251)
Q Consensus 165 Gr~ 167 (251)
|.|
T Consensus 106 g~~ 108 (384)
T 4ezc_A 106 SQD 108 (384)
T ss_dssp TCC
T ss_pred CCC
Confidence 433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.64 E-value=2e+02 Score=24.57 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHHHHHhcHHH
Q 025527 147 VFNATAGASSCFFLSKLIGRPL 168 (251)
Q Consensus 147 ~lgs~lGa~i~y~lgR~lGr~~ 168 (251)
.++..+|..++=++.++++++.
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchH
Confidence 3445555555555555665543
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=22.66 E-value=1e+02 Score=24.74 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025527 129 MSLLAGALFGVIRGLILVVFNATAGASS 156 (251)
Q Consensus 129 L~l~aG~lfG~~~G~l~~~lgs~lGa~i 156 (251)
..+.+|+++|++.|.+...+...++..+
T Consensus 50 ~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 50 PSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998888877776655
No 5
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=20.19 E-value=38 Score=18.72 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=12.7
Q ss_pred hcccccchhhhhHhhhcc
Q 025527 199 RITPSLPNLFINLASPIV 216 (251)
Q Consensus 199 Rl~P~iP~~lvn~~aGi~ 216 (251)
|+.|.+|-.+...++|+-
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 778888876666666653
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=17.76 E-value=4.1e+02 Score=21.68 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=17.8
Q ss_pred ccChH--HHHHHHHHHHHHHHHHHHHHH
Q 025527 122 MIPGT--IFMSLLAGALFGVIRGLILVV 147 (251)
Q Consensus 122 ~iPg~--~~L~l~aG~lfG~~~G~l~~~ 147 (251)
++|.+ .+-.+++|.++|+..|++...
T Consensus 45 pVPiTlQtl~V~LaG~~LG~r~G~lsv~ 72 (198)
T 4dve_A 45 PVPIILQNMGIMMAGGLLGPKYGTISVG 72 (198)
T ss_dssp SCCBCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHChhHHHHHHH
Confidence 34543 345788899999998875443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=16.77 E-value=1.1e+02 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCcccccccccCCcHHHHHHHH
Q 025527 61 FVTGLFCIYLTMPAADYGKLKLPRTIADLRLLK 93 (251)
Q Consensus 61 ~~~~l~~~~~~~P~~~~~~~~lp~~l~dl~~l~ 93 (251)
.+++....|++.||... ++++|+|++-
T Consensus 452 ~~~~~i~~~~~~PETkg------~tLeei~~~f 478 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKG------KTLEELEALW 478 (491)
T ss_dssp HHHHHHHHHHHCCCCTT------CCHHHHGGGT
T ss_pred HHHHHHHHHheecCCCC------CCHHHHHHHh
Confidence 34556667889999866 5667766553
No 8
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=11.71 E-value=2.1e+02 Score=16.01 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 025527 147 VFNATAGASSCFFLSKLI 164 (251)
Q Consensus 147 ~lgs~lGa~i~y~lgR~l 164 (251)
..|+.+|+.-+|++++-.
T Consensus 8 AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 8 AAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHh
Confidence 346667777777776543
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=10.85 E-value=9.6e+02 Score=24.16 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=8.9
Q ss_pred ChhHHHHHHHHhHHHH
Q 025527 219 PFHIFFLATLIGLIPA 234 (251)
Q Consensus 219 ~~~~F~l~t~iG~lP~ 234 (251)
.++.|.+...+|.+-.
T Consensus 466 ~~~~~~~~~~~gl~~s 481 (1052)
T 2v50_A 466 IYRQFSITIVSAMALS 481 (1052)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666665433
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=11.25 E-value=79 Score=17.61 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHH
Q 025527 146 VVFNATAGASSCFFLS 161 (251)
Q Consensus 146 ~~lgs~lGa~i~y~lg 161 (251)
.+++..+|+.++|++-
T Consensus 5 l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLF 20 (26)
Confidence 4566677788777763
Done!