Query 025527
Match_columns 251
No_of_seqs 284 out of 1444
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 12:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 26.2 41 0.003 18.4 3.4 19 49-67 5-23 (34)
2 d1q90m_ f.23.25.1 (M:) PetM su 14.3 95 0.0069 16.6 4.2 24 139-162 4-28 (34)
3 d1v54d_ f.23.1.1 (D:) Mitochon 12.1 1.2E+02 0.0091 21.9 4.4 27 43-69 69-95 (144)
4 d1bl0a1 a.4.1.8 (A:9-62) MarA 5.4 2.6E+02 0.019 15.5 3.1 48 177-224 5-52 (54)
5 d1v54m_ f.23.7.1 (M:) Mitochon 4.5 3.5E+02 0.025 15.3 3.5 25 39-63 3-27 (43)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 4.4 2.7E+02 0.02 18.1 3.1 17 87-103 38-54 (158)
7 d1t33a2 a.121.1.1 (A:89-220) P 4.4 4.7E+02 0.034 17.7 4.5 41 147-187 80-122 (132)
8 d1em9a_ a.73.1.1 (A:) RSV caps 3.9 2.6E+02 0.019 19.9 2.6 41 83-127 13-53 (147)
9 d1xmea1 f.24.1.1 (A:14-562) Ba 3.9 2.5E+02 0.018 24.3 3.0 23 46-68 511-533 (549)
10 d1iwga8 f.35.1.1 (A:513-566,A: 3.6 7.4E+02 0.054 17.8 7.4 20 57-76 32-51 (222)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.18 E-value=41 Score=18.44 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025527 49 WEFAAFVGVFLLFVTGLFC 67 (251)
Q Consensus 49 w~~~~~~~~~~~~~~~l~~ 67 (251)
|.+-.+.++.++.++|++.
T Consensus 5 Wlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 5 WIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEeeehhhhhhHhheeeee
Confidence 8666666666655555543
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.33 E-value=95 Score=16.57 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHH
Q 025527 139 VIRGLILVVFNA-TAGASSCFFLSK 162 (251)
Q Consensus 139 ~~~G~l~~~lgs-~lGa~i~y~lgR 162 (251)
+..|..+.++|. .+|-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 445556666663 345556665544
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.05 E-value=1.2e+02 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=17.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHH
Q 025527 43 RFPLTHWEFAAFVGVFLLFVTGLFCIY 69 (251)
Q Consensus 43 ~~~l~~w~~~~~~~~~~~~~~~l~~~~ 69 (251)
..|-..|+.++..+++.+.+.+++.+|
T Consensus 69 ~~p~gewK~v~g~~~~~i~~s~~i~~~ 95 (144)
T d1v54d_ 69 NRSTNEWKTVVGAAMFFIGFTALLLIW 95 (144)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 457789998877666655555555554
No 4
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=2.6e+02 Score=15.50 Aligned_cols=48 Identities=6% Similarity=-0.089 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhccchHHHHHHhhcccccchhhhhHhhhccCCChhHHH
Q 025527 177 LRFFQAEIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPFHIFF 224 (251)
Q Consensus 177 l~~~~~~l~~~~~~~~~~vl~~Rl~P~iP~~lvn~~aGi~~v~~~~F~ 224 (251)
++++.+++++|-+..+..==+++.+-+-|..+.-..--.+++++.+|+
T Consensus 5 i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 5 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 455555565543222333334455555555566666666666666664
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.47 E-value=3.5e+02 Score=15.30 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=17.2
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHHH
Q 025527 39 FKSERFPLTHWEFAAFVGVFLLFVT 63 (251)
Q Consensus 39 ~~~~~~~l~~w~~~~~~~~~~~~~~ 63 (251)
+|..+.|++--|..+.+.++.+.++
T Consensus 3 skP~~~~ls~~E~aigLt~~f~~~L 27 (43)
T d1v54m_ 3 AKPAKTPTSPKEQAIGLSVTFLSFL 27 (43)
T ss_dssp BCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456778888888877776655444
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.40 E-value=2.7e+02 Score=18.08 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhHHhC
Q 025527 87 ADLRLLKDNLATYAQDY 103 (251)
Q Consensus 87 ~dl~~l~~~l~~~~~~~ 103 (251)
.+++++....+.|...+
T Consensus 38 ~~l~~i~~~~~~~~~~~ 54 (158)
T d2pila_ 38 LLAEGQKSAVTEYYLNH 54 (158)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45566666666665554
No 7
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=4.40 E-value=4.7e+02 Score=17.73 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=25.9
Q ss_pred HHHHHHhHHHHHHHHHHhcHHHHhh--hhhhhHHHHHHHHHHh
Q 025527 147 VFNATAGASSCFFLSKLIGRPLVSW--FWPEKLRFFQAEIAKR 187 (251)
Q Consensus 147 ~lgs~lGa~i~y~lgR~lGr~~~~~--~~~~~l~~~~~~l~~~ 187 (251)
+.-+.+|.++.|.++|..-.....+ +-+++.+++++.+.++
T Consensus 80 ~~~sivGq~l~f~var~~~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 80 HTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 3345678888888887644333321 2256778888887765
No 8
>d1em9a_ a.73.1.1 (A:) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=3.94 E-value=2.6e+02 Score=19.93 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHHHhHHhCChhHHHHHHHHHHhhhccccChHH
Q 025527 83 PRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTI 127 (251)
Q Consensus 83 p~~l~dl~~l~~~l~~~~~~~~~~~~l~fi~~~i~~~~~~iPg~~ 127 (251)
|-++..+++|.+.+.+|+.+.++.. . ++=.+...-++|.+.
T Consensus 13 pl~~k~ikeL~~av~~yG~~spft~--~--lle~l~~~~l~P~Dw 53 (147)
T d1em9a_ 13 PLEPKLITRLADTVRTKGLRSPITM--A--EVEALMSSPLLPHDV 53 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHH--H--HHHHHTSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCcHHH--H--HHHHHhcCCcCHHHH
Confidence 4456899999999999999987521 1 122233334789886
No 9
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=3.94 E-value=2.5e+02 Score=24.32 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH
Q 025527 46 LTHWEFAAFVGVFLLFVTGLFCI 68 (251)
Q Consensus 46 l~~w~~~~~~~~~~~~~~~l~~~ 68 (251)
+.+|+.+..+++.++.+.-..-+
T Consensus 511 l~~~~~w~~~~~~l~~~~y~~~~ 533 (549)
T d1xmea1 511 MDRIGFWFAVAAILVVLAYGPTL 533 (549)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHH
Confidence 44566666666555444433333
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=7.4e+02 Score=17.80 Aligned_cols=20 Identities=20% Similarity=0.705 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHcCccc
Q 025527 57 VFLLFVTGLFCIYLTMPAAD 76 (251)
Q Consensus 57 ~~~~~~~~l~~~~~~~P~~~ 76 (251)
+......++...|...|...
T Consensus 32 ~y~~l~~g~~~~f~~lp~~f 51 (222)
T d1iwga8 32 LYLIIVVGMAYLFVRLPSSF 51 (222)
T ss_dssp HHHHHHHHHHHHHHSSCBCS
T ss_pred HHHHHhhhheeeeccCcHHH
Confidence 34445566777777777543
Done!