BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025529
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 159/244 (65%), Gaps = 5/244 (2%)
Query: 8 NLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67
NLE+ ++DL+ EL RR C SKPD R I + G PGSGKGTQS +K +C CHL+
Sbjct: 5 NLENFSTIDLLNELKRRYACLSKPDGRYIFL-----GAPGSGKGTQSLNLKKSHCYCHLS 59
Query: 68 TGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTE 127
TGD+LR A KT LG+K K +++G+LV D +V+ ++DE +K P C+KGFILDG+PR
Sbjct: 60 TGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNV 119
Query: 128 VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 187
QA+ L+++L+K K+D V F + D VL RI+GR IH SGR YH F PPKVP D
Sbjct: 120 KQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRD 179
Query: 188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 247
DVT EPLIQR+DD VLK RL F +T P+I YY K ++ L A +P ++ ++ +
Sbjct: 180 DVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239
Query: 248 ALSA 251
+
Sbjct: 240 HIDG 243
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 155/209 (74%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L GPPG+GKGTQ+P + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD++V
Sbjct: 21 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+ +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L RI
Sbjct: 81 LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR IHP SGR+YH +F PPK P DD+TGEPLI+R DD LK RLEA+H QT P+++
Sbjct: 141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
YYSK+GI + + A + P V + + A S
Sbjct: 201 YYSKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 156/213 (73%)
Query: 38 IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 97
I L GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K MD G+LVS
Sbjct: 17 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 98 DDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
D++VV +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 77 DEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL 136
Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
RITGR IHP SGR+YH +F PPK P DD+TGEPLI+R DD LK RL+A+H QT
Sbjct: 137 IRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTT 196
Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
P+I+YY K+GI + + A + P V + + A S
Sbjct: 197 PLIEYYRKRGIHSAIDASQTPDVVFASILAAFS 229
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 155/218 (71%), Gaps = 6/218 (2%)
Query: 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
R++LI GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G
Sbjct: 6 RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94 ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
LVSDD++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +
Sbjct: 61 GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
DD +L RITGR IHP+SGR+YH F PPK DDVTGE L+QR DD A LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
H QTEP++D+Y K GI A + A +PP V +++ L
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 154/218 (70%), Gaps = 6/218 (2%)
Query: 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
R++LI GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G
Sbjct: 6 RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94 ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
LVSDD++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +
Sbjct: 61 GLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
DD +L RITGR IHP+SGR+YH F PPK DDVTGE L+QR DD A LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
H QTEP++D+Y K GI A + A +PP V ++ L
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADFLNKLG 218
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 153/218 (70%), Gaps = 6/218 (2%)
Query: 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
R++LI GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G
Sbjct: 6 RMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQG 60
Query: 94 ELVSDDLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152
LVSDD++V +I DE P+C+ GFIL GFPRT QA+KLD+ML++QG ++K + +
Sbjct: 61 GLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 120
Query: 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 212
DD +L RITGR IHP+SGR+YH F PPK DDVTGE L+Q DD A LK RL A+
Sbjct: 121 DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAY 180
Query: 213 HKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
H QTEP++D+Y K GI A + A +PP V +++ L
Sbjct: 181 HAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 144/208 (69%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PGSGKGTQ IK EY L HL+TGDMLR A+ T +G++AK ++ G V D++V
Sbjct: 10 LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+G++ E C GF+LDGFPRT QA+ L ++L + G + V+ F IDD+ + ERI
Sbjct: 70 LGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERI 129
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
+GR HP+SGR YH K+ PPK PG+DDVTGEPL+ R DD A +K RL+ FHKQT P++
Sbjct: 130 SGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVK 189
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
+Y GI+ +++A+ PP+EVT +++K L
Sbjct: 190 FYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 139/212 (65%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G PG+GKGTQ+ I ++Y + H++TGDM RAA+ T LG+KAK MD+G LV D+
Sbjct: 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
+ +GI+ E + K CQKGF+LDGFPRT QA LD +L GKK+D VLN ++ L +
Sbjct: 63 VTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMK 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
R+TGRWI + G TYHT F PP V G+ D G L QR DD +K+RL+ KQT+P+
Sbjct: 123 RLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+D+YS+KG++ + ++ ++V ++ L
Sbjct: 183 LDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 199 bits (507), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 143/214 (66%), Gaps = 11/214 (5%)
Query: 37 LIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 96
+I+V+L GPPG+GKGTQ+ + E H++TGD+LR AV TPLG KAKE M++GELV
Sbjct: 1 MILVFL-GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELV 59
Query: 97 SDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV 156
DDL++ +I+E K I DGFPRT QA+ LDEMLEK+G KVD VL F + D V
Sbjct: 60 PDDLIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEV 116
Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
+ ER++GR I+P +G YH K+ PP PGV +IQR+DD V+K RLE + +QT
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPP-PGVK------VIQREDDKPEVIKKRLEVYREQT 169
Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
P+I+YY KKGI+ + A KP +EV +V + +
Sbjct: 170 APLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 197 bits (500), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLEG 214
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 197 bits (500), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 143/209 (68%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLG 213
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 143/210 (68%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQQDIQDVYADVKDLLGG 214
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG + ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLVNVNGQRDIQDVYADVKDLLGG 214
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 138/210 (65%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ+ I Y + H++TGDM RAA+ TPLG++AK+ MD+G+LV D++
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K CQ GF+LDGFPRT QA+ L+ ML G+K+D V++ + VL ER+
Sbjct: 65 IGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I + G TYH F PP PGV D G L QR DD A + +RLE KQ +P++D
Sbjct: 125 TGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+Y +KG + ++ E+ ++V +++++ L
Sbjct: 185 FYEQKGYLRNINGEQDMEKVFADIRELLGG 214
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQ +P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 142/210 (67%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGT I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT+P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+YS+KG +A ++ ++ Q+V ++V+ L
Sbjct: 185 FYSEKGYLANVNGQRDIQDVYADVKDLLGG 214
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 9/216 (4%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++ +
Sbjct: 63 LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
I YYSK+ A++ KP EV ++++K L
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 140/210 (66%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
L G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D++
Sbjct: 5 LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL ER+
Sbjct: 65 IGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT P++D
Sbjct: 125 TGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLD 184
Query: 222 YYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+Y +KG + ++ ++ Q+V ++++ L
Sbjct: 185 FYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++ +
Sbjct: 63 LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
RI GR +H SGR YH KF PPKV G DD TGE L RKDD ++ RL +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
I YYSK+ A++ KP EV ++++K L
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 126/191 (65%), Gaps = 9/191 (4%)
Query: 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 93
RLIL+ G PG+GKGTQ+ IK+++ + ++TGD LRAAV A TPLG++AK D+G
Sbjct: 10 RLILL-----GAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEG 64
Query: 94 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 153
+LV D L++G++ E +K+ C G++ DGFPRT QA E G +D VL +
Sbjct: 65 KLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVP 120
Query: 154 DAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFH 213
+ + ER +GR HP+SGRTYH KF PPKV G DDVTGEPL+QR DD +K RL+ +
Sbjct: 121 FSEIIERXSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYE 180
Query: 214 KQTEPVIDYYS 224
QT+P+I YY
Sbjct: 181 AQTKPLITYYG 191
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G P +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++ +
Sbjct: 63 LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
I YYSK+ A++ KP EV ++++K L
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D+
Sbjct: 3 IILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++ +
Sbjct: 63 LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVD 118
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
RI GR +H SGR YH KF PPKV G DDVTGE L RKDD ++ RL +H+ T P+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPL 178
Query: 220 IDYYSKKG-----IVAQLHAEKPPQEVTSEVQKALS 250
I YYSK+ A++ KP EV ++++K L
Sbjct: 179 IGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 139/212 (65%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G PG+GKGTQ+ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 IVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ G+ +D V+N +D L E
Sbjct: 63 VTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELME 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
R+TGR I G TYH F PPK PG+ D G L QR DD + RLE KQT P+
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+ +Y K ++ ++ ++ Q+V ++V+ L
Sbjct: 183 LAFYDSKEVLVNVNGQQDIQDVFADVKVILGG 214
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 128/212 (60%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ L G PG+GKGTQ+ I ++Y H++TGDM RAA+ T LG+KAK MD+G LV D+
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
+ +GI+ E + K C GF+LDGFPRT QA+ LD++L G+K++ VLN ++ L
Sbjct: 63 VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIA 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
R+TGR I G +YH F PP+V G D G L QR DD + +RLE QT P+
Sbjct: 123 RLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPL 182
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
+ +Y K ++ ++ +K ++V ++ L
Sbjct: 183 LAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 214
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 125/188 (66%), Gaps = 6/188 (3%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
+ G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ DD++
Sbjct: 11 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
++ +K Q ++LDGFPRT QA+ LD + ++D V+N + V+++R+
Sbjct: 71 TRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIKQRL 124
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
T RWIHP SGR Y+ +F PPK G+DD+TGEPL+QR+DD + RL+A+ QTEPV++
Sbjct: 125 TARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLE 184
Query: 222 YYSKKGIV 229
YY KKG++
Sbjct: 185 YYRKKGVL 192
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 125/188 (66%), Gaps = 6/188 (3%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
+ G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ DD++
Sbjct: 12 IMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM 71
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
+ +K Q ++LDGFPRT QA+ LD + ++D V+N + V+++R+
Sbjct: 72 TRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIKQRL 125
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
T RWIHP+SGR Y+ +F PPK G+DD+TGEPLIQR+DD + RL+A+ QT+PV++
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
Query: 222 YYSKKGIV 229
YY KKG++
Sbjct: 186 YYQKKGVL 193
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 74
VDL TE L ASK + +IL GPPGSGKGT I + L HL++G LR
Sbjct: 11 VDLGTENLYFQSMASKLLRAVIL------GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64
Query: 75 AVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLD 134
+ A T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA+ LD
Sbjct: 65 NIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALD 123
Query: 135 EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 194
++ E VD V++ I L++R++ RWIHP SGR Y+ F PP V G+DDVTGEPL
Sbjct: 124 KICE-----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL 178
Query: 195 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL 232
+Q++DD + +RL + +PVI+ Y +G++ Q
Sbjct: 179 VQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQF 216
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101
+ GPPGSGKGT I + L HL++G LR + A T +G AK+ ++K LV D ++
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 69
Query: 102 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161
++ ++ Q ++LDGFPRT QA+ LD++ E VD V++ I L++R+
Sbjct: 70 TRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLKDRL 123
Query: 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVID 221
+ RWIHP SGR Y+ F PP V G+DDVTGEPL+Q++DD + +R + +PVI+
Sbjct: 124 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIE 183
Query: 222 YYSKKGIVAQL 232
Y +G++ Q
Sbjct: 184 LYKSRGVLHQF 194
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 130/213 (61%), Gaps = 11/213 (5%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
V ++G P SGKGTQ +IK +Y L H++ GD+LRA +AA + G +AKE M+KG+LV D+
Sbjct: 8 VMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 67
Query: 100 LVVGIIDEAMKKPSCQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158
+VV ++ E +++P Q+ G++LDG+PR+ QA L E LE + D + + D +L
Sbjct: 68 IVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELLV 123
Query: 159 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 218
ER+ GR + P +G+ YH K++PP+ ++ L QR DDT +K RLE +++ E
Sbjct: 124 ERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179
Query: 219 VIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
++ Y + I+ ++ + V +++ + L +
Sbjct: 180 LLSTY--ENIIVKVQGDATVDAVFAKIDELLGS 210
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 31/184 (16%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
V L GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV D
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 82
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
L ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL E
Sbjct: 83 LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 142
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
R+ GR R DDT V+ +R++ + +T P+
Sbjct: 143 RLKGRG-------------------------------RADDTDDVILNRMKVYRDETAPL 171
Query: 220 IDYY 223
++YY
Sbjct: 172 LEYY 175
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 31/184 (16%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
V L GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV D
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
L ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL E
Sbjct: 63 LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
R+ GR R DDT V+ +R++ + +T P+
Sbjct: 123 RLKGRG-------------------------------RADDTDDVILNRMKVYRDETAPL 151
Query: 220 IDYY 223
++YY
Sbjct: 152 LEYY 155
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ + GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV DD
Sbjct: 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 63 ITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKN 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQT 216
RI GR I ++ + F P D V G L R DD + R + ++
Sbjct: 122 RIMGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTV 181
Query: 217 EPVI--DYYSKK 226
+ + YY K
Sbjct: 182 DGTLAAAYYYKN 193
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
+ + GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV DD
Sbjct: 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDD 62
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 63 ITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKN 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVD--DVTGEPLIQRKDDT-AAVLKSRLEAFHKQT 216
RI GR I ++ + F P D V G L R DD + R + ++
Sbjct: 122 RIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTV 181
Query: 217 EPVI--DYYSKK 226
+ + YY K
Sbjct: 182 DGTLAAAYYYKN 193
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 32/214 (14%)
Query: 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
I+++ G PGSGKGTQ I +Y HL+TGD+LR+ V++ + G K E M+KG+LV
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70
Query: 99 DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 157
+ V+ ++ +AM K + KGF++DG+PR EVQ E E++ + +L +
Sbjct: 71 ETVLDMLRDAMVAKVNTSKGFLIDGYPR-EVQQ---GEEFERRIGQPTLLLYVDAGPETM 126
Query: 158 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 217
+R+ R +SGR DD +K RLE ++K TE
Sbjct: 127 TQRLLKRG--ETSGRV-------------------------DDNEETIKKRLETYYKATE 159
Query: 218 PVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
PVI +Y K+GIV +++AE V S+V L A
Sbjct: 160 PVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 32/211 (15%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 99
V GPPG+GKGTQ+ + E L+TGD+LR VA TPLG + + M++G+LV DD
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 159
L++ +I E + + I DGFPRT QA+ LD +L + G ++ V+ + + L
Sbjct: 67 LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVR 121
Query: 160 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219
RI R L R DD ++ RLE + ++TEP+
Sbjct: 122 RILRRA---------------------------ELEGRSDDNEETVRRRLEVYREKTEPL 154
Query: 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250
+ YY +G++ ++ P EV + ++ AL
Sbjct: 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
I+++ G PGSGKGTQ I +Y HL+TGD+LRA V++ + G E M+KG+LV
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 70
Query: 99 DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK-VLNFAIDDAV 156
+ V+ ++ +AM K KGF++DG+PR Q ++ + +K+ + L +D
Sbjct: 71 ETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE-------RKIGQPTLLLYVDAG- 122
Query: 157 LEERITGRWIH--PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 214
E +T R + +SGR DD +K RLE ++K
Sbjct: 123 -PETMTKRLLKRGETSGRV-------------------------DDNEETIKKRLETYYK 156
Query: 215 QTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
TEPVI +Y K+GIV +++AE +V S+V
Sbjct: 157 ATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 36/214 (16%)
Query: 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
++++ G PGSGKGTQ + ++ HL++GD+LRA V + +P G + K M++GELV
Sbjct: 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPL 90
Query: 99 DLVVGIIDEAMKK---PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 155
++V+ ++ EAM K +C F++DG+PR Q K EK+ V+NF + +
Sbjct: 91 EVVLALLKEAMIKLVDKNCH--FLIDGYPRELDQGIK----FEKEVCPCLCVINFDVSEE 144
Query: 156 VLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ 215
V+ +R+ R +S R DD + R F++
Sbjct: 145 VMRKRLLKRA--ETSNRV-------------------------DDNEETIVKRFRTFNEL 177
Query: 216 TEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
T+PVI++Y ++ V + A + +V L
Sbjct: 178 TKPVIEHYKQQNKVITIDASGTVDAIFDKVNHEL 211
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 34/215 (15%)
Query: 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 98
I+++ G PGSGKGTQ + ++Y HL+TG++LR +A+++ ++ M++G+LV
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
Query: 99 DLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV-DKVLNFAIDDAV 156
+V+ ++ EAM +GF++DG+PR Q ++ G+++ D L +D +
Sbjct: 74 GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF-------GRRIGDPQLVICMDCSA 126
Query: 157 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQT 216
+ +T R + S +P DDT + RLEA+++ +
Sbjct: 127 --DTMTNRLLQMSR----------SSLP-------------VDDTTKTIAKRLEAYYRAS 161
Query: 217 EPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
PVI YY K + +++AE P++V ++ A+ +
Sbjct: 162 IPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 38 IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGE 94
++V++ G PG+GKGTQ I ++Y HL+ G++LR K P G ++ + +G+
Sbjct: 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE--RKNPDSQYGELIEKYIKEGK 61
Query: 95 LVSDDLVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNF 150
+V ++ + ++ D+ M + + F++DGFPR + Q ++ ++ + V VL F
Sbjct: 62 IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKAD-VSFVLFF 120
Query: 151 AIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE 210
++ + ER R SSGR+ DD L+ R++
Sbjct: 121 DCNNEICIERCLER--GKSSGRS-------------------------DDNRESLEKRIQ 153
Query: 211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245
+ + T+P+ID Y + G V ++ A K EV EV
Sbjct: 154 TYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 41/227 (18%)
Query: 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKA 86
A PD+ + ++++ G PG+GKGTQ + +Y HL+ GD+LRA A + G
Sbjct: 9 AFSPDQ---VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELI 65
Query: 87 KEAMDKGELVSDDLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV 144
K + +G++V ++ + ++ A+ + + F++DGFPR K+D+ + + V
Sbjct: 66 KNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPR------KMDQAISFERDIV 119
Query: 145 DK--VLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTA 202
+ +L F + ++ ER+ R +SGR+ DD
Sbjct: 120 ESKFILFFDCPEDIMLERLLERG--KTSGRS-------------------------DDNI 152
Query: 203 AVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249
+K R F + + PVI+Y+ K V ++ ++ ++V +VQ A+
Sbjct: 153 ESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 35/223 (15%)
Query: 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE 88
SKP+ +V++ G PGSGKGTQ I ++ HL+ GD+LR + + G
Sbjct: 4 SKPN------VVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIAT 57
Query: 89 AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 148
+ GE+V + V ++ A+ + K F++DGFPR E +E + K VL
Sbjct: 58 MIKNGEIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVL 115
Query: 149 NFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSR 208
F + V+ +R+ R SSGR+ DD +K R
Sbjct: 116 FFDCPEEVMTQRLLKR--GESSGRS-------------------------DDNIESIKKR 148
Query: 209 LEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251
F+ QT+ VID+Y+K V + A + EV ++V+ +
Sbjct: 149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 38 IIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA--VAAKTPLGIKAKEAM 90
I + + GP SGK T + II ++ +L TG M RAA +A K LG++ EA+
Sbjct: 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDML 72
V LAGPPG GK T + II E H+ +G +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDML 72
V LAGPPG GK T + II E H+ +G +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDML 72
V LAGPPG GK T + II E H+ +G +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDML 72
V LAGPPG GK T + II E H+ +G +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDML 72
V LAGPPG GK T + II E H+ +G +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 38 IIVWLAGPPGSGKGTQSP----IIKDEYCLCHLATGDMLRAAVA 77
I+VWL G PGSGK T + +++ E + GD R V+
Sbjct: 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS 57
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCH 65
VWL G G+GK T S + +EY +CH
Sbjct: 35 VWLTGLSGAGKTTVSMAL-EEYLVCH 59
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1 In Complex With
Cyclic Paps And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase
Domain Of Human Paps-Synthetase 1 In Complex With
Cyclic Paps And Dadp
Length = 179
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCH 65
VWL G G+GK T S + +EY +CH
Sbjct: 8 VWLTGLSGAGKTTVSMAL-EEYLVCH 32
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate
Synthetase From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate
Synthetase From Moorella Thermoacetica
Length = 557
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59
++ RR+K KPD +LIL+ P G GK T S + D
Sbjct: 46 DVYRRLK--DKPDGKLILVTAITPTPAGEGKTTTSVGLTD 83
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate
Synthetase With Atpgs
Length = 557
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59
++ RR+K KPD +LIL+ P G GK T S + D
Sbjct: 46 DVYRRLK--DKPDGKLILVTAITPTPAGEGKTTTSVGLTD 83
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCH 65
VWL G G+GK T S + +EY +CH
Sbjct: 55 VWLTGLSGAGKTTVSMAL-EEYLVCH 79
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 40 VWLAGPPGSGKGTQSPIIKDEYCLCH 65
+WL G G+GK T S + +EY +CH
Sbjct: 36 IWLTGLSGAGKTTVSMAL-EEYLVCH 60
>pdb|1OSB|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1OSB|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure
Length = 293
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 228
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|2CDM|A Chain A, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
pdb|2CDM|C Chain C, The Structure Of Trwc Complexed With A 27-Mer Dna
Comprising The Recognition Hairpin And The Cleavage Site
Length = 293
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 228
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
>pdb|1OMH|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Free Structure.
pdb|1QX0|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1S6M|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal-
Bound Structure
pdb|1ZM5|A Chain A, Conjugative Relaxase Trwc In Complex With Orit Dna,
Cooper- Bound Structure
Length = 293
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGI 228
D A + + ++E F K+TE + ++Y+ +G+
Sbjct: 220 DLAHIDRQQIEGFSKRTEQIAEWYAARGL 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,640,853
Number of Sequences: 62578
Number of extensions: 323650
Number of successful extensions: 1046
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 61
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)