Query 025529
Match_columns 251
No_of_seqs 123 out of 1453
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.7E-47 3.6E-52 313.9 29.6 243 3-250 2-244 (244)
2 PLN02459 probable adenylate ki 100.0 4.1E-40 8.9E-45 271.3 25.2 225 14-250 9-250 (261)
3 PRK14526 adenylate kinase; Pro 100.0 5.5E-40 1.2E-44 266.0 25.1 209 33-251 1-209 (211)
4 PRK00279 adk adenylate kinase; 100.0 1.8E-39 4E-44 265.2 26.5 214 33-251 1-214 (215)
5 PRK14529 adenylate kinase; Pro 100.0 1.2E-39 2.5E-44 264.7 24.5 212 33-250 1-223 (223)
6 TIGR01351 adk adenylate kinase 100.0 1.4E-38 3.1E-43 259.0 25.9 207 35-249 2-209 (210)
7 PTZ00088 adenylate kinase 1; P 100.0 1.9E-37 4E-42 253.9 25.5 210 30-249 4-229 (229)
8 PRK14530 adenylate kinase; Pro 100.0 1.3E-35 2.9E-40 242.4 25.2 206 32-251 3-213 (215)
9 KOG3079 Uridylate kinase/adeny 100.0 4.3E-34 9.4E-39 219.2 22.5 187 29-250 5-192 (195)
10 KOG3078 Adenylate kinase [Nucl 100.0 1.4E-34 3E-39 232.6 20.6 211 30-250 13-223 (235)
11 PRK13808 adenylate kinase; Pro 100.0 4.1E-34 8.9E-39 243.4 24.2 192 33-250 1-192 (333)
12 PRK14528 adenylate kinase; Pro 100.0 6.4E-33 1.4E-37 221.4 24.3 185 33-249 2-186 (186)
13 PRK14532 adenylate kinase; Pro 100.0 1E-32 2.2E-37 220.9 24.6 186 33-250 1-186 (188)
14 PRK14531 adenylate kinase; Pro 100.0 1.6E-32 3.4E-37 218.8 24.0 180 33-249 3-182 (183)
15 PLN02842 nucleotide kinase 100.0 7.5E-32 1.6E-36 239.8 22.5 199 42-250 2-201 (505)
16 PRK14527 adenylate kinase; Pro 100.0 4.4E-31 9.6E-36 211.9 24.7 187 30-249 4-190 (191)
17 cd01428 ADK Adenylate kinase ( 100.0 2.2E-31 4.8E-36 214.0 23.0 193 35-241 2-194 (194)
18 PRK02496 adk adenylate kinase; 100.0 5.2E-31 1.1E-35 210.3 24.7 182 33-250 2-183 (184)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 8.4E-31 1.8E-35 208.8 23.0 181 40-249 2-182 (183)
20 PLN02200 adenylate kinase fami 100.0 4.1E-30 8.9E-35 211.7 23.6 182 31-250 42-223 (234)
21 COG0563 Adk Adenylate kinase a 100.0 1.7E-29 3.8E-34 199.1 20.8 177 33-249 1-177 (178)
22 PF00406 ADK: Adenylate kinase 100.0 5.8E-29 1.2E-33 192.3 18.6 148 44-227 3-150 (151)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 1E-26 2.3E-31 185.8 24.3 183 32-250 3-186 (188)
24 PRK13974 thymidylate kinase; P 99.7 4.5E-17 9.9E-22 132.7 14.7 178 31-250 2-205 (212)
25 PRK01184 hypothetical protein; 99.7 4.2E-16 9.1E-21 124.2 19.9 169 39-250 3-177 (184)
26 PRK03839 putative kinase; Prov 99.7 1.6E-16 3.5E-21 126.2 16.1 151 33-250 1-152 (180)
27 PRK13973 thymidylate kinase; P 99.7 9.1E-16 2E-20 125.1 17.5 173 32-250 3-205 (213)
28 COG1102 Cmk Cytidylate kinase 99.7 4.5E-15 9.8E-20 112.3 16.4 111 39-165 2-112 (179)
29 COG0703 AroK Shikimate kinase 99.7 3.3E-15 7.2E-20 115.6 14.8 111 32-164 2-115 (172)
30 PRK06217 hypothetical protein; 99.7 4.1E-15 8.8E-20 118.5 15.7 171 33-251 2-179 (183)
31 PRK14730 coaE dephospho-CoA ki 99.7 3.4E-15 7.4E-20 119.9 14.3 162 40-250 4-193 (195)
32 PRK00081 coaE dephospho-CoA ki 99.7 1E-15 2.3E-20 122.9 11.2 161 40-250 5-192 (194)
33 COG0125 Tmk Thymidylate kinase 99.7 2E-14 4.4E-19 115.7 18.2 176 31-250 2-202 (208)
34 PRK13949 shikimate kinase; Pro 99.6 1.4E-14 2.9E-19 113.9 16.6 108 34-164 3-114 (169)
35 PRK13975 thymidylate kinase; P 99.6 2.6E-14 5.7E-19 114.9 16.9 171 33-250 3-189 (196)
36 PRK08356 hypothetical protein; 99.6 6.9E-15 1.5E-19 118.3 13.4 118 31-165 4-136 (195)
37 PLN02924 thymidylate kinase 99.6 2.3E-14 5E-19 117.0 14.7 175 29-250 13-202 (220)
38 PRK14734 coaE dephospho-CoA ki 99.6 1.2E-14 2.5E-19 117.3 12.1 163 39-250 3-193 (200)
39 KOG3220 Similar to bacterial d 99.6 2.1E-14 4.5E-19 112.3 11.9 161 39-249 3-192 (225)
40 PRK03731 aroL shikimate kinase 99.6 1.4E-13 3E-18 108.3 16.8 164 34-251 4-170 (171)
41 PRK13948 shikimate kinase; Pro 99.6 7.6E-14 1.6E-18 110.6 15.1 110 30-162 8-121 (182)
42 PRK08233 hypothetical protein; 99.6 1.5E-14 3.3E-19 114.7 11.2 164 41-250 7-176 (182)
43 TIGR02173 cyt_kin_arch cytidyl 99.6 1.9E-13 4E-18 107.4 16.7 111 39-165 2-113 (171)
44 COG0237 CoaE Dephospho-CoA kin 99.6 2.4E-14 5.2E-19 114.8 11.7 162 39-250 4-191 (201)
45 PRK00625 shikimate kinase; Pro 99.6 1.1E-13 2.3E-18 109.0 14.7 117 33-165 1-117 (173)
46 PLN02422 dephospho-CoA kinase 99.6 7.4E-14 1.6E-18 114.3 14.2 161 40-250 4-193 (232)
47 PRK13947 shikimate kinase; Pro 99.6 1.2E-13 2.6E-18 108.6 14.9 109 34-165 3-115 (171)
48 PHA02530 pseT polynucleotide k 99.6 3.5E-14 7.5E-19 121.7 12.7 168 33-240 3-171 (300)
49 PRK00698 tmk thymidylate kinas 99.6 2.6E-13 5.6E-18 109.8 17.0 175 31-250 2-201 (205)
50 TIGR00152 dephospho-CoA kinase 99.6 1.9E-14 4E-19 115.1 9.8 160 39-246 1-187 (188)
51 PRK05057 aroK shikimate kinase 99.6 1.5E-13 3.2E-18 108.3 14.5 163 32-251 4-171 (172)
52 PRK14731 coaE dephospho-CoA ki 99.6 6.9E-14 1.5E-18 113.6 12.8 162 40-250 8-201 (208)
53 PRK00131 aroK shikimate kinase 99.6 1.9E-13 4.1E-18 107.6 14.6 115 31-165 3-118 (175)
54 COG1936 Predicted nucleotide k 99.5 2E-13 4.3E-18 104.8 13.8 154 33-250 1-155 (180)
55 TIGR00041 DTMP_kinase thymidyl 99.5 4E-13 8.7E-18 107.9 16.4 123 32-165 3-149 (195)
56 cd01672 TMPK Thymidine monopho 99.5 7.9E-13 1.7E-17 106.1 18.0 174 33-251 1-200 (200)
57 PTZ00451 dephospho-CoA kinase; 99.5 1.9E-13 4E-18 112.9 13.4 163 39-249 3-205 (244)
58 KOG3347 Predicted nucleotide k 99.5 4.7E-13 1E-17 99.9 14.0 160 30-249 5-164 (176)
59 PRK04040 adenylate kinase; Pro 99.5 1.5E-12 3.3E-17 103.9 18.1 178 32-250 2-188 (188)
60 PRK07933 thymidylate kinase; V 99.5 7.9E-13 1.7E-17 107.7 16.3 180 33-249 1-211 (213)
61 PRK13946 shikimate kinase; Pro 99.5 6.1E-13 1.3E-17 106.0 15.3 116 29-165 7-124 (184)
62 cd02022 DPCK Dephospho-coenzym 99.5 2E-13 4.4E-18 108.3 11.9 115 39-165 1-143 (179)
63 PRK14732 coaE dephospho-CoA ki 99.5 2.9E-13 6.4E-18 108.7 12.5 162 39-250 1-189 (196)
64 PRK04182 cytidylate kinase; Pr 99.5 1.8E-12 3.9E-17 102.6 16.1 111 40-165 3-113 (180)
65 PLN02199 shikimate kinase 99.5 2.5E-12 5.5E-17 107.8 16.9 113 30-163 100-214 (303)
66 PRK14021 bifunctional shikimat 99.5 1.6E-12 3.6E-17 119.4 17.1 118 29-164 3-123 (542)
67 PF01121 CoaE: Dephospho-CoA k 99.5 1.7E-13 3.7E-18 108.4 9.2 116 39-165 2-144 (180)
68 PRK08118 topology modulation p 99.5 2.9E-13 6.2E-18 106.2 10.1 100 33-166 2-101 (167)
69 COG3265 GntK Gluconate kinase 99.5 7.5E-13 1.6E-17 98.8 11.5 153 44-250 2-158 (161)
70 KOG3354 Gluconate kinase [Carb 99.5 8.4E-13 1.8E-17 99.2 11.2 163 34-249 14-186 (191)
71 cd02030 NDUO42 NADH:Ubiquinone 99.5 2.9E-12 6.3E-17 104.9 14.6 176 41-247 3-217 (219)
72 PF02223 Thymidylate_kin: Thym 99.4 9E-13 2E-17 105.1 10.8 160 44-245 3-186 (186)
73 PRK14733 coaE dephospho-CoA ki 99.4 6.7E-12 1.5E-16 101.0 15.7 162 40-250 9-197 (204)
74 PRK13976 thymidylate kinase; P 99.4 1.4E-11 3.1E-16 99.9 17.5 119 33-164 1-145 (209)
75 PRK08154 anaerobic benzoate ca 99.4 6.4E-12 1.4E-16 108.0 16.0 130 17-165 115-248 (309)
76 PRK06762 hypothetical protein; 99.4 9.5E-12 2.1E-16 97.4 15.5 159 33-250 3-163 (166)
77 PF01202 SKI: Shikimate kinase 99.4 4.5E-12 9.8E-17 98.5 13.1 103 46-165 1-106 (158)
78 PF13671 AAA_33: AAA domain; P 99.4 1.7E-12 3.6E-17 98.9 9.7 115 40-165 2-119 (143)
79 TIGR01313 therm_gnt_kin carboh 99.4 1.2E-11 2.7E-16 96.4 14.3 155 42-249 3-161 (163)
80 PRK03333 coaE dephospho-CoA ki 99.4 5.6E-12 1.2E-16 111.6 13.7 161 40-250 4-191 (395)
81 COG1428 Deoxynucleoside kinase 99.4 1.2E-11 2.5E-16 98.2 12.4 30 32-66 4-33 (216)
82 TIGR03574 selen_PSTK L-seryl-t 99.4 2E-11 4.4E-16 101.9 14.1 110 40-164 2-116 (249)
83 cd01673 dNK Deoxyribonucleosid 99.3 8E-11 1.7E-15 94.4 16.3 119 41-165 3-146 (193)
84 cd00464 SK Shikimate kinase (S 99.3 4.2E-11 9E-16 92.3 12.9 112 35-165 2-113 (154)
85 cd02020 CMPK Cytidine monophos 99.3 4.8E-12 1E-16 96.7 7.3 103 39-164 1-103 (147)
86 PRK10078 ribose 1,5-bisphospho 99.3 5.5E-11 1.2E-15 94.9 12.6 159 34-250 4-175 (186)
87 cd02021 GntK Gluconate kinase 99.3 5.6E-11 1.2E-15 91.4 11.9 114 39-165 1-119 (150)
88 COG0283 Cmk Cytidylate kinase 99.3 4.4E-10 9.5E-15 89.6 15.5 38 33-75 5-42 (222)
89 PRK13951 bifunctional shikimat 99.3 1.3E-10 2.8E-15 105.5 14.2 108 33-164 1-112 (488)
90 PRK07261 topology modulation p 99.2 3.6E-11 7.9E-16 94.6 8.4 101 33-166 1-101 (171)
91 PRK12339 2-phosphoglycerate ki 99.2 6.2E-10 1.3E-14 89.4 15.2 176 32-250 3-196 (197)
92 smart00072 GuKc Guanylate kina 99.2 5.1E-11 1.1E-15 94.9 8.6 163 33-251 3-182 (184)
93 KOG3327 Thymidylate kinase/ade 99.2 4.3E-10 9.4E-15 87.1 13.0 176 30-250 3-194 (208)
94 PRK14738 gmk guanylate kinase; 99.2 2.1E-11 4.5E-16 98.9 5.7 166 29-250 10-193 (206)
95 cd00227 CPT Chloramphenicol (C 99.2 6.5E-10 1.4E-14 87.8 13.9 120 33-165 3-132 (175)
96 TIGR02322 phosphon_PhnN phosph 99.2 7.4E-09 1.6E-13 82.0 18.4 66 145-250 112-177 (179)
97 PRK09825 idnK D-gluconate kina 99.2 9.7E-10 2.1E-14 86.9 13.0 157 33-250 4-167 (176)
98 PF13207 AAA_17: AAA domain; P 99.1 2.1E-11 4.6E-16 90.2 2.9 34 39-72 1-34 (121)
99 PRK05480 uridine/cytidine kina 99.1 1.2E-09 2.7E-14 88.7 13.5 38 30-72 4-44 (209)
100 PRK00023 cmk cytidylate kinase 99.1 1.6E-10 3.6E-15 94.8 7.3 38 33-75 5-42 (225)
101 PRK06547 hypothetical protein; 99.1 4.5E-10 9.8E-15 88.3 9.4 124 29-164 12-138 (172)
102 COG0194 Gmk Guanylate kinase [ 99.1 7.9E-10 1.7E-14 86.3 10.2 162 31-250 3-181 (191)
103 PRK05416 glmZ(sRNA)-inactivati 99.1 9.8E-09 2.1E-13 87.0 16.2 94 42-164 11-106 (288)
104 PRK11545 gntK gluconate kinase 99.1 3.1E-09 6.8E-14 83.0 12.3 151 44-250 2-159 (163)
105 TIGR00017 cmk cytidylate kinas 99.1 7.8E-09 1.7E-13 84.4 14.9 38 33-75 3-40 (217)
106 COG2019 AdkA Archaeal adenylat 99.1 5.8E-09 1.2E-13 79.8 12.8 176 32-250 4-187 (189)
107 COG4088 Predicted nucleotide k 99.1 9.8E-09 2.1E-13 81.2 14.5 110 42-164 6-122 (261)
108 PRK05537 bifunctional sulfate 99.0 6.3E-09 1.4E-13 96.1 14.8 129 16-162 376-510 (568)
109 PRK13477 bifunctional pantoate 99.0 1.3E-08 2.7E-13 92.4 16.4 40 31-75 283-322 (512)
110 PRK11860 bifunctional 3-phosph 99.0 1.3E-08 2.8E-13 96.1 16.7 41 30-75 440-480 (661)
111 PRK06696 uridine kinase; Valid 99.0 2.2E-09 4.8E-14 88.1 10.1 54 15-73 4-63 (223)
112 PRK05541 adenylylsulfate kinas 99.0 1E-08 2.2E-13 81.0 13.5 111 30-162 5-120 (176)
113 PF07931 CPT: Chloramphenicol 99.0 8E-10 1.7E-14 86.7 7.0 112 39-165 3-131 (174)
114 PRK00300 gmk guanylate kinase; 99.0 2.2E-08 4.8E-13 80.9 15.2 164 31-250 4-183 (205)
115 PRK14737 gmk guanylate kinase; 99.0 1.6E-08 3.4E-13 80.7 13.6 164 31-250 3-183 (186)
116 cd02024 NRK1 Nicotinamide ribo 99.0 9.4E-10 2E-14 87.5 6.3 35 39-73 1-36 (187)
117 PF13238 AAA_18: AAA domain; P 99.0 2.7E-09 6E-14 79.3 8.4 109 40-165 1-113 (129)
118 PRK12338 hypothetical protein; 99.0 2E-08 4.3E-13 85.8 14.3 43 31-78 3-45 (319)
119 PHA03132 thymidine kinase; Pro 99.0 5.9E-09 1.3E-13 95.2 11.8 129 32-165 257-423 (580)
120 PRK09518 bifunctional cytidyla 99.0 1.3E-09 2.8E-14 103.7 7.2 36 40-75 4-39 (712)
121 PRK07667 uridine kinase; Provi 98.9 7.9E-09 1.7E-13 82.9 9.0 35 40-74 20-59 (193)
122 PRK00889 adenylylsulfate kinas 98.9 2.5E-08 5.4E-13 78.7 11.6 36 31-71 3-43 (175)
123 cd02023 UMPK Uridine monophosp 98.9 1.7E-08 3.8E-13 81.2 10.7 34 39-72 1-37 (198)
124 TIGR03263 guanyl_kin guanylate 98.9 8.7E-09 1.9E-13 81.6 8.8 162 33-250 2-179 (180)
125 PTZ00301 uridine kinase; Provi 98.9 1.2E-08 2.5E-13 82.9 9.2 34 39-72 5-45 (210)
126 TIGR00235 udk uridine kinase. 98.9 1.6E-08 3.5E-13 82.0 10.1 39 28-71 2-43 (207)
127 TIGR01663 PNK-3'Pase polynucle 98.9 2.9E-08 6.3E-13 90.5 12.4 103 30-165 367-469 (526)
128 TIGR03575 selen_PSTK_euk L-ser 98.8 4.1E-08 8.9E-13 84.9 11.7 48 117-165 129-176 (340)
129 COG0572 Udk Uridine kinase [Nu 98.8 9E-09 1.9E-13 82.8 6.8 117 39-165 10-149 (218)
130 cd02027 APSK Adenosine 5'-phos 98.8 5E-08 1.1E-12 75.0 10.2 109 40-162 2-115 (149)
131 KOG3877 NADH:ubiquinone oxidor 98.8 4.1E-07 8.8E-12 75.1 15.5 129 31-165 70-239 (393)
132 PF01583 APS_kinase: Adenylyls 98.8 2.4E-08 5.1E-13 76.8 7.9 109 39-161 4-117 (156)
133 TIGR00455 apsK adenylylsulfate 98.8 1.9E-07 4.2E-12 74.2 13.2 112 30-160 16-132 (184)
134 PRK12269 bifunctional cytidyla 98.8 3.3E-07 7.1E-12 88.1 16.6 39 33-76 35-73 (863)
135 KOG3308 Uncharacterized protei 98.8 4.5E-08 9.7E-13 77.1 8.5 117 39-165 6-149 (225)
136 PF03668 ATP_bind_2: P-loop AT 98.8 5.9E-07 1.3E-11 75.2 15.5 146 39-250 3-155 (284)
137 PRK03846 adenylylsulfate kinas 98.7 1.8E-07 4E-12 75.3 11.7 112 29-160 21-138 (198)
138 cd02025 PanK Pantothenate kina 98.7 9.2E-08 2E-12 78.3 9.9 33 39-71 1-40 (220)
139 PRK09270 nucleoside triphospha 98.7 3.8E-07 8.2E-12 75.2 13.0 50 8-62 6-58 (229)
140 COG0645 Predicted kinase [Gene 98.7 3.3E-07 7.1E-12 70.6 11.4 115 42-165 6-125 (170)
141 PF08433 KTI12: Chromatin asso 98.7 3.5E-07 7.5E-12 77.0 11.7 107 41-165 5-120 (270)
142 PRK04220 2-phosphoglycerate ki 98.7 1.7E-06 3.7E-11 73.4 15.8 41 30-76 90-131 (301)
143 cd02019 NK Nucleoside/nucleoti 98.7 4.9E-08 1.1E-12 64.9 5.2 22 40-61 2-23 (69)
144 PF00485 PRK: Phosphoribulokin 98.7 1.7E-08 3.6E-13 81.1 3.5 24 39-62 1-24 (194)
145 PLN02348 phosphoribulokinase 98.6 8.4E-08 1.8E-12 83.9 7.7 23 40-62 52-74 (395)
146 PF06414 Zeta_toxin: Zeta toxi 98.6 1.5E-07 3.3E-12 75.8 8.6 120 30-165 13-142 (199)
147 PRK07429 phosphoribulokinase; 98.6 6E-07 1.3E-11 77.6 12.4 38 29-71 5-45 (327)
148 cd02026 PRK Phosphoribulokinas 98.6 4.5E-07 9.7E-12 76.6 11.0 33 39-71 1-36 (273)
149 COG0529 CysC Adenylylsulfate k 98.6 5.4E-07 1.2E-11 69.8 9.7 105 41-160 27-137 (197)
150 COG4639 Predicted kinase [Gene 98.6 1.5E-06 3.3E-11 65.9 11.6 113 34-164 4-117 (168)
151 PRK05506 bifunctional sulfate 98.5 7.9E-07 1.7E-11 83.8 11.8 112 31-161 459-575 (632)
152 COG1660 Predicted P-loop-conta 98.5 4.3E-06 9.2E-11 68.6 14.3 146 39-250 3-156 (286)
153 PRK12337 2-phosphoglycerate ki 98.5 8.6E-06 1.9E-10 72.8 17.2 40 30-75 253-293 (475)
154 cd02028 UMPK_like Uridine mono 98.5 2.2E-07 4.8E-12 73.7 5.7 35 39-73 1-40 (179)
155 PRK05439 pantothenate kinase; 98.5 9.4E-08 2E-12 81.7 3.0 33 40-72 89-128 (311)
156 PHA00729 NTP-binding motif con 98.4 5E-06 1.1E-10 67.8 12.4 113 31-165 16-140 (226)
157 PF00625 Guanylate_kin: Guanyl 98.4 1.3E-06 2.8E-11 69.5 8.0 26 32-62 2-27 (183)
158 TIGR00554 panK_bact pantothena 98.4 3.3E-07 7.1E-12 77.8 4.7 24 142-165 195-218 (290)
159 PF13189 Cytidylate_kin2: Cyti 98.3 1.9E-06 4E-11 68.3 7.4 116 39-165 1-135 (179)
160 PF01591 6PF2K: 6-phosphofruct 98.3 2.6E-05 5.6E-10 63.7 14.0 155 30-220 10-179 (222)
161 PLN02772 guanylate kinase 98.3 1.9E-05 4.1E-10 69.3 13.4 166 31-250 134-317 (398)
162 COG2074 2-phosphoglycerate kin 98.2 5.8E-05 1.3E-09 61.9 13.4 45 28-77 85-129 (299)
163 PLN02318 phosphoribulokinase/u 98.1 5.6E-06 1.2E-10 75.9 7.1 32 40-71 68-100 (656)
164 COG3709 Uncharacterized compon 98.1 9E-05 2E-09 56.8 10.9 66 145-250 116-181 (192)
165 PHA03136 thymidine kinase; Pro 98.0 0.00044 9.4E-09 60.3 16.3 24 142-165 190-213 (378)
166 KOG4235 Mitochondrial thymidin 98.0 0.00059 1.3E-08 53.9 14.2 29 137-165 147-175 (244)
167 PRK15453 phosphoribulokinase; 97.9 3.3E-05 7.2E-10 64.9 7.5 38 30-72 3-45 (290)
168 PF00004 AAA: ATPase family as 97.9 1.2E-05 2.5E-10 59.8 3.5 28 42-69 3-30 (132)
169 PF05191 ADK_lid: Adenylate ki 97.9 4.1E-06 8.9E-11 47.7 0.5 36 164-199 1-36 (36)
170 COG1072 CoaA Panthothenate kin 97.8 1.4E-05 3.1E-10 66.3 3.5 25 142-166 209-233 (283)
171 PF08303 tRNA_lig_kinase: tRNA 97.8 0.00029 6.4E-09 54.3 10.0 28 44-71 6-34 (168)
172 COG4185 Uncharacterized protei 97.8 0.001 2.2E-08 51.0 12.4 108 44-165 9-118 (187)
173 TIGR03707 PPK2_P_aer polyphosp 97.8 0.0027 5.9E-08 52.1 16.0 185 29-250 28-222 (230)
174 KOG0730 AAA+-type ATPase [Post 97.8 0.00016 3.4E-09 66.6 9.4 125 30-164 466-613 (693)
175 PTZ00322 6-phosphofructo-2-kin 97.8 0.0002 4.4E-09 68.0 10.6 118 32-165 215-347 (664)
176 PLN02165 adenylate isopentenyl 97.8 2.8E-05 6E-10 67.0 4.3 39 28-71 39-77 (334)
177 PRK12724 flagellar biosynthesi 97.8 0.00036 7.7E-09 62.1 11.2 109 32-154 223-344 (432)
178 PF01745 IPT: Isopentenyl tran 97.8 0.00011 2.4E-09 59.0 7.3 120 35-164 4-138 (233)
179 PHA02575 1 deoxynucleoside mon 97.7 3E-05 6.5E-10 62.9 3.8 38 39-77 2-40 (227)
180 PF13173 AAA_14: AAA domain 97.7 0.00035 7.7E-09 52.0 9.1 97 34-160 4-104 (128)
181 PRK05800 cobU adenosylcobinami 97.7 4.3E-05 9.3E-10 60.0 4.2 32 33-69 2-35 (170)
182 PRK09169 hypothetical protein; 97.7 0.00061 1.3E-08 70.3 12.9 110 31-164 2109-2220(2316)
183 TIGR03709 PPK2_rel_1 polyphosp 97.7 0.0057 1.2E-07 51.2 16.7 183 30-249 54-246 (264)
184 TIGR00174 miaA tRNA isopenteny 97.7 2.7E-05 5.8E-10 66.0 2.7 32 40-71 2-33 (287)
185 TIGR03708 poly_P_AMP_trns poly 97.7 0.0055 1.2E-07 55.8 17.4 172 29-237 37-215 (493)
186 TIGR02881 spore_V_K stage V sp 97.6 0.00043 9.3E-09 58.2 9.7 27 30-61 40-66 (261)
187 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00014 2.9E-09 54.6 5.9 41 19-64 9-49 (133)
188 PRK00091 miaA tRNA delta(2)-is 97.6 5.7E-05 1.2E-09 64.8 4.3 35 32-71 4-38 (307)
189 PF05496 RuvB_N: Holliday junc 97.6 0.00011 2.3E-09 59.7 4.9 32 32-68 50-81 (233)
190 PF13521 AAA_28: AAA domain; P 97.6 5E-05 1.1E-09 59.0 2.8 36 34-77 1-36 (163)
191 KOG0744 AAA+-type ATPase [Post 97.6 0.00018 4E-09 61.1 6.2 28 31-63 176-203 (423)
192 PRK06761 hypothetical protein; 97.6 4.5E-05 9.8E-10 64.5 2.6 26 33-63 4-29 (282)
193 cd02029 PRK_like Phosphoribulo 97.6 2.9E-05 6.3E-10 64.8 1.3 35 39-73 1-40 (277)
194 TIGR00390 hslU ATP-dependent p 97.5 7.7E-05 1.7E-09 66.1 3.9 35 31-70 46-80 (441)
195 KOG0739 AAA+-type ATPase [Post 97.5 0.00083 1.8E-08 56.7 9.5 44 33-81 167-212 (439)
196 TIGR02640 gas_vesic_GvpN gas v 97.5 0.00013 2.8E-09 61.4 5.0 47 17-68 6-52 (262)
197 CHL00181 cbbX CbbX; Provisiona 97.5 0.00051 1.1E-08 58.6 8.5 26 31-61 58-83 (287)
198 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00087 1.9E-08 61.5 10.1 35 30-69 221-255 (802)
199 PHA03134 thymidine kinase; Pro 97.5 0.0084 1.8E-07 51.7 15.4 21 145-165 165-185 (340)
200 COG1618 Predicted nucleotide k 97.5 0.00012 2.5E-09 56.2 3.6 39 31-74 4-42 (179)
201 PRK05201 hslU ATP-dependent pr 97.5 0.00011 2.4E-09 65.1 4.0 34 32-70 50-83 (443)
202 PLN02840 tRNA dimethylallyltra 97.5 0.00012 2.6E-09 65.1 4.1 36 30-70 19-54 (421)
203 smart00382 AAA ATPases associa 97.5 0.00012 2.6E-09 54.2 3.5 28 32-64 2-29 (148)
204 PRK12377 putative replication 97.4 0.006 1.3E-07 50.8 13.8 105 32-162 101-215 (248)
205 COG2256 MGS1 ATPase related to 97.4 0.00049 1.1E-08 60.1 7.4 35 30-69 46-80 (436)
206 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00018 4E-09 62.6 4.8 42 17-63 59-104 (361)
207 COG3896 Chloramphenicol 3-O-ph 97.4 0.0041 9E-08 47.6 11.4 126 31-164 22-160 (205)
208 COG1222 RPT1 ATP-dependent 26S 97.4 0.001 2.3E-08 57.3 8.8 121 30-162 183-331 (406)
209 PF00910 RNA_helicase: RNA hel 97.4 0.00011 2.5E-09 53.0 2.3 22 40-61 1-22 (107)
210 cd00071 GMPK Guanosine monopho 97.4 0.00011 2.3E-09 55.6 2.2 23 40-62 2-24 (137)
211 KOG0635 Adenosine 5'-phosphosu 97.3 0.00054 1.2E-08 52.0 5.5 21 41-61 35-55 (207)
212 PRK06526 transposase; Provisio 97.3 0.0035 7.6E-08 52.5 11.0 39 31-74 97-140 (254)
213 PHA03135 thymidine kinase; Pro 97.3 0.017 3.7E-07 49.8 15.2 23 33-60 11-33 (343)
214 PF03266 NTPase_1: NTPase; In 97.3 0.00016 3.5E-09 56.7 2.7 21 41-61 3-23 (168)
215 PRK12723 flagellar biosynthesi 97.3 0.0038 8.3E-08 55.3 11.6 26 31-61 173-198 (388)
216 PLN02748 tRNA dimethylallyltra 97.3 0.00026 5.6E-09 63.9 4.2 36 30-70 20-55 (468)
217 PF05729 NACHT: NACHT domain 97.3 0.00018 4E-09 55.4 2.6 22 40-61 3-24 (166)
218 KOG3062 RNA polymerase II elon 97.3 0.0016 3.5E-08 52.7 7.8 22 40-61 4-25 (281)
219 TIGR01650 PD_CobS cobaltochela 97.2 0.00033 7.2E-09 60.3 4.1 32 32-68 64-95 (327)
220 PF13401 AAA_22: AAA domain; P 97.2 0.00073 1.6E-08 50.1 5.5 25 32-61 4-28 (131)
221 PLN02796 D-glycerate 3-kinase 97.2 0.00017 3.7E-09 62.4 2.3 36 31-71 99-139 (347)
222 PF07728 AAA_5: AAA domain (dy 97.2 0.00032 6.9E-09 52.9 3.4 24 44-67 6-29 (139)
223 PF03029 ATP_bind_1: Conserved 97.2 0.00017 3.6E-09 59.8 2.0 20 43-62 2-21 (238)
224 PF06309 Torsin: Torsin; Inte 97.2 0.00099 2.1E-08 49.2 5.6 37 20-61 39-77 (127)
225 CHL00195 ycf46 Ycf46; Provisio 97.1 0.00045 9.8E-09 63.0 4.1 34 31-69 258-291 (489)
226 PRK08099 bifunctional DNA-bind 97.1 0.00046 1E-08 61.5 4.1 31 31-66 218-248 (399)
227 cd00009 AAA The AAA+ (ATPases 97.1 0.00073 1.6E-08 50.4 4.6 32 32-68 19-53 (151)
228 PRK05342 clpX ATP-dependent pr 97.1 0.0005 1.1E-08 61.4 4.2 33 32-69 108-140 (412)
229 TIGR01223 Pmev_kin_anim phosph 97.1 0.0069 1.5E-07 47.4 9.9 114 39-161 1-132 (182)
230 PF02367 UPF0079: Uncharacteri 97.1 0.0007 1.5E-08 50.0 4.2 30 30-64 13-42 (123)
231 PRK03992 proteasome-activating 97.1 0.0005 1.1E-08 61.2 3.9 34 30-68 163-196 (389)
232 PLN00020 ribulose bisphosphate 97.1 0.00057 1.2E-08 59.6 4.0 38 30-72 146-185 (413)
233 COG1855 ATPase (PilT family) [ 97.1 0.00031 6.8E-09 62.2 2.4 23 34-61 265-287 (604)
234 PRK10646 ADP-binding protein; 97.1 0.0016 3.4E-08 50.0 5.9 45 15-64 11-55 (153)
235 PF03976 PPK2: Polyphosphate k 97.1 0.0056 1.2E-07 50.3 9.5 169 30-237 29-206 (228)
236 PLN03046 D-glycerate 3-kinase; 97.1 0.0003 6.6E-09 62.3 2.1 36 31-71 211-251 (460)
237 PF13245 AAA_19: Part of AAA d 97.0 0.00081 1.7E-08 45.4 3.7 25 32-61 10-35 (76)
238 PF01712 dNK: Deoxynucleoside 97.0 0.00048 1E-08 52.7 2.8 25 141-165 64-89 (146)
239 COG0802 Predicted ATPase or ki 97.0 0.0017 3.7E-08 49.3 5.7 45 14-63 7-51 (149)
240 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0018 3.8E-08 52.9 6.4 42 13-61 21-62 (226)
241 PRK09435 membrane ATPase/prote 97.0 0.0012 2.6E-08 57.2 5.6 40 17-61 41-80 (332)
242 PRK04195 replication factor C 97.0 0.0012 2.6E-08 60.5 5.8 34 30-68 37-70 (482)
243 PHA02244 ATPase-like protein 97.0 0.001 2.2E-08 58.2 5.0 35 32-71 119-153 (383)
244 cd01131 PilT Pilus retraction 97.0 0.00046 9.9E-09 55.6 2.7 23 40-62 4-26 (198)
245 PTZ00454 26S protease regulato 97.0 0.00077 1.7E-08 60.1 4.2 34 30-68 177-210 (398)
246 PF03215 Rad17: Rad17 cell cyc 97.0 0.0014 3E-08 60.3 5.8 25 43-67 51-75 (519)
247 PRK08116 hypothetical protein; 97.0 0.014 3E-07 49.3 11.4 38 32-74 114-156 (268)
248 PRK09087 hypothetical protein; 97.0 0.0011 2.4E-08 54.5 4.7 36 32-72 44-79 (226)
249 COG0324 MiaA tRNA delta(2)-iso 97.0 0.00096 2.1E-08 56.9 4.4 35 32-71 3-37 (308)
250 TIGR01242 26Sp45 26S proteasom 97.0 0.00086 1.9E-08 59.1 4.3 33 31-68 155-187 (364)
251 KOG0733 Nuclear AAA ATPase (VC 97.0 0.006 1.3E-07 56.2 9.6 41 32-77 545-587 (802)
252 TIGR00635 ruvB Holliday juncti 97.0 0.0015 3.2E-08 56.0 5.6 31 30-65 28-58 (305)
253 TIGR01526 nadR_NMN_Atrans nico 97.0 0.00088 1.9E-08 58.1 4.2 31 32-67 162-192 (325)
254 KOG0743 AAA+-type ATPase [Post 97.0 0.0011 2.4E-08 58.7 4.8 34 30-68 233-266 (457)
255 TIGR00382 clpX endopeptidase C 97.0 0.00087 1.9E-08 59.8 4.1 32 33-69 117-148 (413)
256 cd03115 SRP The signal recogni 97.0 0.00058 1.3E-08 53.5 2.7 22 40-61 3-24 (173)
257 cd00544 CobU Adenosylcobinamid 97.0 0.00062 1.3E-08 53.4 2.8 23 40-62 2-24 (169)
258 COG4240 Predicted kinase [Gene 96.9 0.00071 1.5E-08 54.9 3.0 33 40-72 53-91 (300)
259 TIGR03708 poly_P_AMP_trns poly 96.9 0.13 2.9E-06 47.0 17.9 179 29-250 296-490 (493)
260 TIGR01241 FtsH_fam ATP-depende 96.9 0.0009 1.9E-08 61.5 4.1 35 30-69 86-120 (495)
261 PRK11784 tRNA 2-selenouridine 96.9 0.0017 3.7E-08 56.7 5.6 115 31-165 140-257 (345)
262 COG3911 Predicted ATPase [Gene 96.9 0.0068 1.5E-07 46.0 7.9 29 32-66 9-37 (183)
263 COG0466 Lon ATP-dependent Lon 96.9 0.0017 3.7E-08 60.7 5.7 35 29-68 347-381 (782)
264 KOG4622 Predicted nucleotide k 96.9 0.021 4.5E-07 45.4 10.9 33 131-164 110-142 (291)
265 PF07724 AAA_2: AAA domain (Cd 96.9 0.0011 2.4E-08 52.0 3.9 28 31-63 2-29 (171)
266 PRK14962 DNA polymerase III su 96.9 0.0017 3.6E-08 59.2 5.4 38 21-63 25-62 (472)
267 COG1419 FlhF Flagellar GTP-bin 96.9 0.0034 7.3E-08 55.3 7.0 36 30-70 201-243 (407)
268 PF07726 AAA_3: ATPase family 96.9 0.00063 1.4E-08 50.4 2.0 29 35-68 2-30 (131)
269 PRK08903 DnaA regulatory inact 96.8 0.0041 8.9E-08 51.0 7.1 35 31-70 41-80 (227)
270 COG2812 DnaX DNA polymerase II 96.8 0.0055 1.2E-07 56.0 8.4 116 28-154 34-157 (515)
271 cd01120 RecA-like_NTPases RecA 96.8 0.00073 1.6E-08 51.7 2.4 22 40-61 2-23 (165)
272 KOG0735 AAA+-type ATPase [Post 96.8 0.022 4.9E-07 53.5 12.2 42 32-78 701-744 (952)
273 cd01124 KaiC KaiC is a circadi 96.8 0.00057 1.2E-08 54.0 1.8 30 40-69 2-36 (187)
274 PRK06620 hypothetical protein; 96.8 0.0022 4.7E-08 52.3 5.2 30 33-67 45-74 (214)
275 PTZ00361 26 proteosome regulat 96.8 0.0013 2.8E-08 59.2 4.2 34 30-68 215-248 (438)
276 TIGR02880 cbbX_cfxQ probable R 96.8 0.0016 3.4E-08 55.5 4.5 26 31-61 57-82 (284)
277 PF01695 IstB_IS21: IstB-like 96.8 0.0022 4.8E-08 50.7 5.0 40 30-74 45-89 (178)
278 COG2255 RuvB Holliday junction 96.8 0.0012 2.6E-08 55.3 3.6 29 35-68 55-83 (332)
279 PRK14242 phosphate transporter 96.8 0.00037 8E-09 58.2 0.5 55 1-60 1-55 (253)
280 PF00448 SRP54: SRP54-type pro 96.8 0.0013 2.7E-08 52.9 3.5 25 32-61 1-25 (196)
281 KOG1969 DNA replication checkp 96.8 0.00084 1.8E-08 62.7 2.8 26 43-68 332-357 (877)
282 COG1219 ClpX ATP-dependent pro 96.8 0.0013 2.8E-08 55.9 3.7 35 31-70 96-130 (408)
283 TIGR00176 mobB molybdopterin-g 96.8 0.00087 1.9E-08 51.8 2.4 23 39-61 1-23 (155)
284 PRK00080 ruvB Holliday junctio 96.8 0.0025 5.5E-08 55.3 5.6 31 31-66 50-80 (328)
285 PF10662 PduV-EutP: Ethanolami 96.8 0.0012 2.5E-08 50.1 3.0 22 34-60 3-24 (143)
286 COG1223 Predicted ATPase (AAA+ 96.8 0.0034 7.5E-08 52.1 5.9 53 18-75 132-191 (368)
287 KOG0734 AAA+-type ATPase conta 96.7 0.0062 1.4E-07 55.3 7.7 35 29-68 334-368 (752)
288 PF13555 AAA_29: P-loop contai 96.7 0.0012 2.5E-08 42.6 2.3 23 34-61 25-47 (62)
289 PF03308 ArgK: ArgK protein; 96.7 0.0029 6.3E-08 52.5 5.3 39 18-61 15-53 (266)
290 PRK08181 transposase; Validate 96.7 0.014 3E-07 49.3 9.4 39 31-74 105-148 (269)
291 KOG0707 Guanylate kinase [Nucl 96.7 0.0087 1.9E-07 48.6 7.8 25 33-62 38-62 (231)
292 TIGR01618 phage_P_loop phage n 96.7 0.0016 3.5E-08 53.2 3.6 35 29-70 9-43 (220)
293 PRK00771 signal recognition pa 96.7 0.005 1.1E-07 55.5 7.1 26 31-61 94-119 (437)
294 COG1703 ArgK Putative periplas 96.7 0.0036 7.7E-08 52.9 5.5 42 15-61 34-75 (323)
295 KOG0736 Peroxisome assembly fa 96.7 0.022 4.8E-07 53.9 11.1 55 15-74 678-744 (953)
296 CHL00176 ftsH cell division pr 96.7 0.0019 4.2E-08 60.8 4.4 35 30-69 214-248 (638)
297 KOG2004 Mitochondrial ATP-depe 96.7 0.0032 6.9E-08 58.9 5.5 52 15-71 417-474 (906)
298 PHA03138 thymidine kinase; Pro 96.7 0.046 9.9E-07 47.3 12.1 25 32-61 12-36 (340)
299 PRK13342 recombination factor 96.7 0.002 4.3E-08 57.9 4.1 33 31-68 35-67 (413)
300 COG1126 GlnQ ABC-type polar am 96.7 0.0018 3.9E-08 52.2 3.4 28 27-59 23-50 (240)
301 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.0017 3.7E-08 66.7 3.9 46 21-73 1621-1668(2281)
302 PRK10751 molybdopterin-guanine 96.6 0.0025 5.5E-08 50.0 4.0 27 31-62 5-31 (173)
303 KOG1384 tRNA delta(2)-isopente 96.6 0.0059 1.3E-07 52.1 6.4 35 31-70 6-40 (348)
304 COG0396 sufC Cysteine desulfur 96.6 0.0017 3.8E-08 52.7 3.0 40 19-63 17-56 (251)
305 PRK13695 putative NTPase; Prov 96.6 0.0022 4.8E-08 50.3 3.6 24 33-61 1-24 (174)
306 COG4619 ABC-type uncharacteriz 96.6 0.0014 2.9E-08 51.0 2.2 29 28-61 25-53 (223)
307 PF13191 AAA_16: AAA ATPase do 96.6 0.0032 7E-08 49.4 4.5 38 19-61 10-48 (185)
308 PHA03133 thymidine kinase; Pro 96.6 0.27 5.9E-06 42.9 16.4 23 143-165 193-215 (368)
309 PRK14729 miaA tRNA delta(2)-is 96.6 0.003 6.5E-08 54.0 4.5 34 32-71 4-37 (300)
310 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0025 5.3E-08 45.9 3.4 23 31-58 14-36 (107)
311 PRK10787 DNA-binding ATP-depen 96.6 0.0039 8.4E-08 60.3 5.8 34 30-68 347-380 (784)
312 KOG1970 Checkpoint RAD17-RFC c 96.6 0.0038 8.3E-08 56.7 5.3 33 30-67 108-140 (634)
313 TIGR03689 pup_AAA proteasome A 96.6 0.0021 4.7E-08 58.8 3.6 29 31-64 215-243 (512)
314 PF08477 Miro: Miro-like prote 96.6 0.0025 5.5E-08 46.3 3.4 23 34-61 1-23 (119)
315 PRK12323 DNA polymerase III su 96.5 0.051 1.1E-06 51.1 12.5 42 16-63 23-64 (700)
316 PRK14961 DNA polymerase III su 96.5 0.0044 9.6E-08 54.6 5.5 30 29-63 35-64 (363)
317 PRK14956 DNA polymerase III su 96.5 0.0047 1E-07 56.0 5.7 31 29-64 37-67 (484)
318 PRK06893 DNA replication initi 96.5 0.0087 1.9E-07 49.3 6.9 34 31-69 38-76 (229)
319 KOG0731 AAA+-type ATPase conta 96.5 0.002 4.3E-08 61.0 3.4 36 29-69 341-376 (774)
320 TIGR01243 CDC48 AAA family ATP 96.5 0.0025 5.4E-08 61.4 4.0 35 30-69 485-519 (733)
321 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0021 4.5E-08 44.6 2.6 30 40-69 2-34 (99)
322 PLN03025 replication factor C 96.5 0.005 1.1E-07 53.3 5.5 24 33-61 35-58 (319)
323 TIGR03015 pepcterm_ATPase puta 96.5 0.0028 6.1E-08 53.2 3.9 26 32-62 43-68 (269)
324 cd01918 HprK_C HprK/P, the bif 96.5 0.0033 7.2E-08 48.1 3.8 32 32-69 14-45 (149)
325 PRK08084 DNA replication initi 96.5 0.0061 1.3E-07 50.4 5.7 35 31-70 44-83 (235)
326 TIGR00750 lao LAO/AO transport 96.5 0.0044 9.5E-08 53.2 5.0 39 18-61 20-58 (300)
327 cd03116 MobB Molybdenum is an 96.5 0.0021 4.5E-08 49.9 2.7 21 41-61 5-25 (159)
328 PHA02544 44 clamp loader, smal 96.5 0.0051 1.1E-07 53.0 5.4 31 30-65 41-71 (316)
329 PHA02624 large T antigen; Prov 96.5 0.0062 1.3E-07 56.5 6.0 43 22-69 421-463 (647)
330 COG0464 SpoVK ATPases of the A 96.5 0.0028 6.1E-08 58.2 3.8 35 30-69 274-308 (494)
331 TIGR00101 ureG urease accessor 96.5 0.0034 7.4E-08 50.5 3.9 25 32-61 1-25 (199)
332 PRK04296 thymidine kinase; Pro 96.5 0.0019 4.2E-08 51.6 2.4 21 41-61 6-26 (190)
333 PRK06645 DNA polymerase III su 96.4 0.0057 1.2E-07 56.1 5.7 32 28-64 39-70 (507)
334 PF06745 KaiC: KaiC; InterPro 96.4 0.0062 1.3E-07 49.9 5.5 25 30-59 17-41 (226)
335 PRK12402 replication factor C 96.4 0.0057 1.2E-07 53.0 5.5 23 34-61 38-60 (337)
336 TIGR00763 lon ATP-dependent pr 96.4 0.0058 1.3E-07 59.2 6.1 33 31-68 346-378 (775)
337 PRK06921 hypothetical protein; 96.4 0.05 1.1E-06 45.9 11.0 38 31-73 116-159 (266)
338 KOG1534 Putative transcription 96.4 0.017 3.6E-07 46.5 7.5 40 211-250 208-247 (273)
339 PRK14960 DNA polymerase III su 96.4 0.0061 1.3E-07 57.2 5.8 42 17-64 23-64 (702)
340 KOG0729 26S proteasome regulat 96.4 0.012 2.6E-07 49.1 6.7 45 31-80 210-256 (435)
341 PRK10416 signal recognition pa 96.4 0.004 8.6E-08 53.9 4.2 26 31-61 113-138 (318)
342 COG1136 SalX ABC-type antimicr 96.4 0.0034 7.4E-08 51.3 3.5 31 24-59 23-53 (226)
343 PRK11034 clpA ATP-dependent Cl 96.4 0.0055 1.2E-07 58.9 5.5 30 34-68 490-519 (758)
344 TIGR02237 recomb_radB DNA repa 96.4 0.0024 5.2E-08 51.6 2.7 34 31-69 11-49 (209)
345 PRK14964 DNA polymerase III su 96.4 0.0065 1.4E-07 55.4 5.6 32 27-63 30-61 (491)
346 cd01394 radB RadB. The archaea 96.4 0.0025 5.5E-08 51.8 2.7 27 30-61 17-43 (218)
347 PRK07764 DNA polymerase III su 96.4 0.047 1E-06 53.1 11.7 42 17-64 23-64 (824)
348 KOG0737 AAA+-type ATPase [Post 96.4 0.0028 6E-08 54.9 3.0 42 30-76 125-168 (386)
349 cd01130 VirB11-like_ATPase Typ 96.4 0.0046 9.9E-08 49.2 4.1 26 31-61 24-49 (186)
350 COG3839 MalK ABC-type sugar tr 96.4 0.0033 7.2E-08 54.4 3.5 29 28-61 25-53 (338)
351 PRK07952 DNA replication prote 96.4 0.015 3.3E-07 48.3 7.3 37 33-74 100-141 (244)
352 PF03205 MobB: Molybdopterin g 96.4 0.0035 7.6E-08 47.5 3.2 23 34-61 2-24 (140)
353 PRK00149 dnaA chromosomal repl 96.4 0.07 1.5E-06 48.5 12.3 55 15-74 130-192 (450)
354 TIGR00064 ftsY signal recognit 96.4 0.0044 9.6E-08 52.4 4.1 26 31-61 71-96 (272)
355 PRK10463 hydrogenase nickel in 96.3 0.0026 5.7E-08 54.0 2.7 27 30-61 102-128 (290)
356 COG4525 TauB ABC-type taurine 96.3 0.0049 1.1E-07 49.1 4.0 48 2-59 6-53 (259)
357 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0026 5.6E-08 55.9 2.7 26 31-61 133-158 (358)
358 PRK14088 dnaA chromosomal repl 96.3 0.014 3E-07 52.9 7.4 51 20-75 118-175 (440)
359 PRK14955 DNA polymerase III su 96.3 0.0074 1.6E-07 53.9 5.6 33 27-64 33-65 (397)
360 KOG4238 Bifunctional ATP sulfu 96.3 0.028 6E-07 48.7 8.7 30 40-69 53-85 (627)
361 PF13086 AAA_11: AAA domain; P 96.3 0.0061 1.3E-07 49.5 4.7 23 34-61 19-41 (236)
362 COG1220 HslU ATP-dependent pro 96.3 0.0044 9.5E-08 53.3 3.8 33 31-68 49-81 (444)
363 COG1124 DppF ABC-type dipeptid 96.3 0.0032 6.9E-08 51.6 2.9 36 21-61 22-57 (252)
364 PRK05703 flhF flagellar biosyn 96.3 0.043 9.3E-07 49.4 10.4 34 32-70 221-261 (424)
365 PRK14963 DNA polymerase III su 96.3 0.0069 1.5E-07 55.7 5.4 32 27-63 31-62 (504)
366 COG0378 HypB Ni2+-binding GTPa 96.3 0.0052 1.1E-07 48.8 3.9 24 33-61 14-37 (202)
367 COG0714 MoxR-like ATPases [Gen 96.3 0.0046 1E-07 53.7 4.1 33 31-68 42-74 (329)
368 TIGR01243 CDC48 AAA family ATP 96.3 0.004 8.6E-08 60.0 3.9 34 30-68 210-243 (733)
369 COG1116 TauB ABC-type nitrate/ 96.3 0.0043 9.2E-08 51.1 3.5 32 25-61 22-53 (248)
370 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.011 2.3E-07 49.0 6.0 26 30-60 19-44 (237)
371 PRK14490 putative bifunctional 96.3 0.0027 5.9E-08 56.1 2.6 27 31-62 4-30 (369)
372 PRK11331 5-methylcytosine-spec 96.3 0.0048 1E-07 55.5 4.1 27 31-62 193-219 (459)
373 TIGR00362 DnaA chromosomal rep 96.3 0.12 2.5E-06 46.4 13.0 57 13-74 116-180 (405)
374 PRK15455 PrkA family serine pr 96.3 0.0072 1.6E-07 55.9 5.2 26 31-61 102-127 (644)
375 PF00693 Herpes_TK: Thymidine 96.3 0.17 3.6E-06 42.7 12.9 122 44-165 1-167 (281)
376 PRK14974 cell division protein 96.2 0.005 1.1E-07 53.6 4.0 26 31-61 139-164 (336)
377 COG3842 PotA ABC-type spermidi 96.2 0.0042 9.1E-08 54.1 3.5 26 30-60 29-54 (352)
378 KOG1532 GTPase XAB1, interacts 96.2 0.0061 1.3E-07 50.9 4.2 42 29-75 16-62 (366)
379 PRK04328 hypothetical protein; 96.2 0.011 2.4E-07 49.3 5.9 26 30-60 21-46 (249)
380 KOG0738 AAA+-type ATPase [Post 96.2 0.0041 9E-08 54.3 3.3 31 34-69 247-277 (491)
381 PRK09183 transposase/IS protei 96.2 0.007 1.5E-07 50.8 4.6 38 30-72 100-142 (259)
382 cd03283 ABC_MutS-like MutS-lik 96.2 0.0029 6.4E-08 50.9 2.3 22 33-59 26-47 (199)
383 PRK14957 DNA polymerase III su 96.2 0.0091 2E-07 55.3 5.7 41 17-63 24-64 (546)
384 PF01078 Mg_chelatase: Magnesi 96.2 0.0039 8.6E-08 50.2 2.9 25 32-61 22-46 (206)
385 cd03297 ABC_ModC_molybdenum_tr 96.2 0.003 6.4E-08 51.3 2.2 24 33-61 24-47 (214)
386 PRK08533 flagellar accessory p 96.2 0.014 3E-07 48.1 6.2 24 31-59 23-46 (230)
387 PF04665 Pox_A32: Poxvirus A32 96.2 0.0057 1.2E-07 50.5 3.9 26 31-61 12-37 (241)
388 PRK14086 dnaA chromosomal repl 96.2 0.092 2E-06 49.2 12.1 38 34-76 316-360 (617)
389 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0043 9.3E-08 45.1 2.9 21 34-59 1-21 (116)
390 cd04163 Era Era subfamily. Er 96.2 0.0049 1.1E-07 46.9 3.3 24 32-60 3-26 (168)
391 PRK14949 DNA polymerase III su 96.2 0.0084 1.8E-07 58.0 5.4 32 28-64 34-65 (944)
392 PRK08939 primosomal protein Dn 96.2 0.051 1.1E-06 46.8 9.8 105 31-162 155-270 (306)
393 COG0542 clpA ATP-binding subun 96.2 0.015 3.1E-07 55.6 6.9 44 29-77 517-566 (786)
394 PRK13341 recombination factor 96.2 0.006 1.3E-07 58.4 4.4 35 31-70 51-85 (725)
395 PRK14958 DNA polymerase III su 96.2 0.0097 2.1E-07 54.8 5.7 43 16-64 23-65 (509)
396 TIGR01420 pilT_fam pilus retra 96.2 0.0036 7.8E-08 54.8 2.7 27 31-62 121-147 (343)
397 COG1117 PstB ABC-type phosphat 96.2 0.0048 1E-07 49.8 3.2 32 25-61 26-57 (253)
398 KOG0989 Replication factor C, 96.2 0.01 2.3E-07 50.3 5.3 31 30-65 55-85 (346)
399 PRK06835 DNA replication prote 96.2 0.012 2.6E-07 51.1 5.9 38 32-74 183-225 (329)
400 PF00005 ABC_tran: ABC transpo 96.2 0.004 8.6E-08 46.6 2.6 26 31-61 10-35 (137)
401 cd03114 ArgK-like The function 96.1 0.0036 7.7E-08 47.9 2.3 22 40-61 2-23 (148)
402 PRK14493 putative bifunctional 96.1 0.0039 8.5E-08 52.7 2.7 22 40-61 4-25 (274)
403 COG5192 BMS1 GTP-binding prote 96.1 0.0045 9.7E-08 56.4 3.2 27 30-61 66-93 (1077)
404 PF06068 TIP49: TIP49 C-termin 96.1 0.0078 1.7E-07 52.5 4.5 33 31-68 49-83 (398)
405 KOG2028 ATPase related to the 96.1 0.0069 1.5E-07 52.6 4.1 25 33-62 163-187 (554)
406 TIGR02639 ClpA ATP-dependent C 96.1 0.0094 2E-07 57.4 5.6 33 34-71 486-520 (731)
407 cd03292 ABC_FtsE_transporter F 96.1 0.0056 1.2E-07 49.6 3.5 27 30-61 25-51 (214)
408 KOG0651 26S proteasome regulat 96.1 0.014 3.1E-07 49.6 5.9 40 30-74 164-205 (388)
409 TIGR00960 3a0501s02 Type II (G 96.1 0.0058 1.3E-07 49.6 3.5 27 30-61 27-53 (216)
410 TIGR03499 FlhF flagellar biosy 96.1 0.0067 1.4E-07 51.6 4.0 26 31-61 193-218 (282)
411 TIGR01166 cbiO cobalt transpor 96.1 0.006 1.3E-07 48.5 3.5 28 29-61 15-42 (190)
412 cd03301 ABC_MalK_N The N-termi 96.1 0.0062 1.4E-07 49.3 3.6 28 29-61 23-50 (213)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0061 1.3E-07 49.5 3.5 27 30-61 28-54 (218)
414 KOG0727 26S proteasome regulat 96.1 0.082 1.8E-06 43.9 9.9 43 32-79 189-233 (408)
415 TIGR00073 hypB hydrogenase acc 96.0 0.013 2.8E-07 47.4 5.3 30 28-62 18-47 (207)
416 PRK14969 DNA polymerase III su 96.0 0.012 2.6E-07 54.5 5.6 43 16-64 23-65 (527)
417 cd04155 Arl3 Arl3 subfamily. 96.0 0.0067 1.5E-07 47.1 3.5 26 30-60 12-37 (173)
418 KOG1533 Predicted GTPase [Gene 96.0 0.0041 8.8E-08 50.7 2.2 40 207-246 206-249 (290)
419 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0068 1.5E-07 49.0 3.6 28 29-61 24-51 (211)
420 cd03264 ABC_drug_resistance_li 96.0 0.0061 1.3E-07 49.3 3.3 25 31-61 25-49 (211)
421 TIGR02525 plasmid_TraJ plasmid 96.0 0.0046 9.9E-08 54.6 2.7 23 34-61 151-173 (372)
422 COG1484 DnaC DNA replication p 96.0 0.018 4E-07 48.1 6.1 39 31-74 104-147 (254)
423 cd03224 ABC_TM1139_LivF_branch 96.0 0.0068 1.5E-07 49.4 3.5 27 30-61 24-50 (222)
424 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0067 1.5E-07 47.9 3.3 27 30-61 23-49 (177)
425 cd03219 ABC_Mj1267_LivG_branch 96.0 0.0062 1.3E-07 50.1 3.3 28 29-61 23-50 (236)
426 cd03269 ABC_putative_ATPase Th 96.0 0.0072 1.6E-07 48.9 3.6 27 30-61 24-50 (210)
427 PRK13541 cytochrome c biogenes 96.0 0.0073 1.6E-07 48.3 3.5 27 30-61 24-50 (195)
428 cd03263 ABC_subfamily_A The AB 96.0 0.0072 1.6E-07 49.2 3.5 29 28-61 24-52 (220)
429 TIGR02673 FtsE cell division A 96.0 0.0072 1.6E-07 49.0 3.5 28 29-61 25-52 (214)
430 cd03261 ABC_Org_Solvent_Resist 96.0 0.0072 1.6E-07 49.8 3.5 27 30-61 24-50 (235)
431 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0073 1.6E-07 49.2 3.5 28 29-61 28-55 (221)
432 PRK11432 fbpC ferric transport 96.0 0.0014 3.1E-08 57.5 -0.7 30 27-61 27-56 (351)
433 PRK06067 flagellar accessory p 96.0 0.018 3.9E-07 47.4 5.9 26 30-60 23-48 (234)
434 PRK13768 GTPase; Provisional 96.0 0.0076 1.6E-07 50.4 3.7 20 42-61 7-26 (253)
435 cd01129 PulE-GspE PulE/GspE Th 96.0 0.0051 1.1E-07 51.8 2.6 23 34-61 82-104 (264)
436 PRK05896 DNA polymerase III su 96.0 0.015 3.2E-07 54.3 5.8 30 29-63 35-64 (605)
437 PRK06851 hypothetical protein; 95.9 0.0052 1.1E-07 54.0 2.7 25 32-61 30-54 (367)
438 cd03229 ABC_Class3 This class 95.9 0.0081 1.7E-07 47.3 3.6 27 30-61 24-50 (178)
439 cd03259 ABC_Carb_Solutes_like 95.9 0.0077 1.7E-07 48.8 3.6 28 29-61 23-50 (213)
440 cd03262 ABC_HisP_GlnQ_permease 95.9 0.0077 1.7E-07 48.7 3.6 27 30-61 24-50 (213)
441 cd03265 ABC_DrrA DrrA is the A 95.9 0.0078 1.7E-07 49.1 3.6 27 30-61 24-50 (220)
442 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0082 1.8E-07 46.8 3.6 29 28-61 23-51 (166)
443 PRK14722 flhF flagellar biosyn 95.9 0.0081 1.8E-07 52.9 3.8 26 31-61 136-161 (374)
444 PRK14494 putative molybdopteri 95.9 0.0053 1.2E-07 50.4 2.5 22 40-61 4-25 (229)
445 PRK10867 signal recognition pa 95.9 0.009 2E-07 53.7 4.2 26 31-61 99-124 (433)
446 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0077 1.7E-07 48.5 3.4 27 30-61 24-50 (205)
447 TIGR03608 L_ocin_972_ABC putat 95.9 0.0077 1.7E-07 48.5 3.5 27 30-61 22-48 (206)
448 PRK13531 regulatory ATPase Rav 95.9 0.0084 1.8E-07 54.4 4.0 28 30-62 37-64 (498)
449 cd03247 ABCC_cytochrome_bd The 95.9 0.0084 1.8E-07 47.2 3.5 28 29-61 25-52 (178)
450 KOG0991 Replication factor C, 95.9 0.0067 1.5E-07 49.6 2.9 27 30-61 46-72 (333)
451 PF02492 cobW: CobW/HypB/UreG, 95.9 0.0048 1E-07 48.7 2.1 19 41-59 4-22 (178)
452 TIGR03410 urea_trans_UrtE urea 95.9 0.0079 1.7E-07 49.3 3.5 28 29-61 23-50 (230)
453 cd03258 ABC_MetN_methionine_tr 95.9 0.0082 1.8E-07 49.3 3.6 27 30-61 29-55 (233)
454 COG1224 TIP49 DNA helicase TIP 95.9 0.01 2.2E-07 51.5 4.1 34 30-68 63-98 (450)
455 cd03256 ABC_PhnC_transporter A 95.9 0.0081 1.8E-07 49.6 3.5 28 29-61 24-51 (241)
456 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0087 1.9E-07 46.9 3.5 28 29-61 23-50 (173)
457 cd03235 ABC_Metallic_Cations A 95.9 0.0075 1.6E-07 48.9 3.2 27 30-61 23-49 (213)
458 cd03246 ABCC_Protease_Secretio 95.9 0.009 2E-07 46.8 3.6 28 29-61 25-52 (173)
459 TIGR02315 ABC_phnC phosphonate 95.9 0.0082 1.8E-07 49.6 3.5 30 27-61 23-52 (243)
460 cd03218 ABC_YhbG The ABC trans 95.9 0.0083 1.8E-07 49.2 3.5 27 30-61 24-50 (232)
461 cd03215 ABC_Carb_Monos_II This 95.9 0.0083 1.8E-07 47.4 3.4 28 29-61 23-50 (182)
462 cd03216 ABC_Carb_Monos_I This 95.9 0.0088 1.9E-07 46.5 3.5 28 29-61 23-50 (163)
463 cd03296 ABC_CysA_sulfate_impor 95.9 0.0084 1.8E-07 49.5 3.5 27 30-61 26-52 (239)
464 TIGR01425 SRP54_euk signal rec 95.9 0.01 2.2E-07 53.3 4.2 26 31-61 99-124 (429)
465 COG1125 OpuBA ABC-type proline 95.9 0.0033 7.3E-08 52.0 1.1 33 24-61 19-51 (309)
466 cd03260 ABC_PstB_phosphate_tra 95.9 0.0087 1.9E-07 49.0 3.6 27 30-61 24-50 (227)
467 PRK11629 lolD lipoprotein tran 95.9 0.0085 1.9E-07 49.3 3.5 27 30-61 33-59 (233)
468 COG1120 FepC ABC-type cobalami 95.9 0.0087 1.9E-07 49.9 3.5 28 29-61 25-52 (258)
469 cd03257 ABC_NikE_OppD_transpor 95.9 0.0083 1.8E-07 49.0 3.4 29 28-61 27-55 (228)
470 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0082 1.8E-07 48.9 3.4 27 30-61 28-54 (220)
471 PRK14951 DNA polymerase III su 95.9 0.017 3.6E-07 54.3 5.8 42 16-63 23-64 (618)
472 PF05673 DUF815: Protein of un 95.9 0.78 1.7E-05 38.1 14.8 103 27-162 47-158 (249)
473 TIGR03864 PQQ_ABC_ATP ABC tran 95.9 0.0088 1.9E-07 49.3 3.6 27 30-61 25-51 (236)
474 TIGR02323 CP_lyasePhnK phospho 95.9 0.0082 1.8E-07 50.0 3.4 28 29-61 26-53 (253)
475 cd03232 ABC_PDR_domain2 The pl 95.8 0.0086 1.9E-07 47.8 3.4 25 30-59 31-55 (192)
476 PRK08691 DNA polymerase III su 95.8 0.017 3.7E-07 54.6 5.8 43 16-64 23-65 (709)
477 COG2884 FtsE Predicted ATPase 95.8 0.01 2.2E-07 47.0 3.6 27 30-61 26-52 (223)
478 PRK10733 hflB ATP-dependent me 95.8 0.0078 1.7E-07 57.1 3.6 33 32-69 185-217 (644)
479 PRK10247 putative ABC transpor 95.8 0.0091 2E-07 48.9 3.6 28 29-61 30-57 (225)
480 PRK13851 type IV secretion sys 95.8 0.0082 1.8E-07 52.4 3.5 29 29-62 159-187 (344)
481 cd03228 ABCC_MRP_Like The MRP 95.8 0.0097 2.1E-07 46.5 3.6 30 27-61 23-52 (171)
482 PRK07940 DNA polymerase III su 95.8 0.019 4.1E-07 51.2 5.8 29 31-64 35-63 (394)
483 PF00931 NB-ARC: NB-ARC domain 95.8 0.015 3.3E-07 49.1 5.0 38 18-60 5-42 (287)
484 TIGR03771 anch_rpt_ABC anchore 95.8 0.0092 2E-07 48.8 3.5 26 31-61 5-30 (223)
485 cd03238 ABC_UvrA The excision 95.8 0.0096 2.1E-07 47.0 3.4 25 29-58 18-42 (176)
486 TIGR01978 sufC FeS assembly AT 95.8 0.0091 2E-07 49.3 3.5 26 30-60 24-49 (243)
487 PRK14250 phosphate ABC transpo 95.8 0.0093 2E-07 49.4 3.5 27 30-61 27-53 (241)
488 cd02034 CooC The accessory pro 95.8 0.0071 1.5E-07 44.3 2.5 21 41-61 3-23 (116)
489 TIGR00959 ffh signal recogniti 95.8 0.011 2.4E-07 53.1 4.2 26 31-61 98-123 (428)
490 PRK11264 putative amino-acid A 95.8 0.0095 2.1E-07 49.5 3.6 27 30-61 27-53 (250)
491 PRK11124 artP arginine transpo 95.8 0.0095 2.1E-07 49.3 3.6 27 30-61 26-52 (242)
492 PRK13540 cytochrome c biogenes 95.8 0.01 2.2E-07 47.7 3.6 27 30-61 25-51 (200)
493 PF01443 Viral_helicase1: Vira 95.8 0.0067 1.5E-07 49.7 2.6 20 42-61 3-22 (234)
494 PRK00440 rfc replication facto 95.8 0.019 4.2E-07 49.3 5.6 23 34-61 40-62 (319)
495 PF13479 AAA_24: AAA domain 95.8 0.0075 1.6E-07 49.1 2.8 30 31-68 2-31 (213)
496 TIGR03167 tRNA_sel_U_synt tRNA 95.8 0.077 1.7E-06 45.8 9.1 116 31-165 126-244 (311)
497 PRK15177 Vi polysaccharide exp 95.8 0.0098 2.1E-07 48.4 3.5 27 30-61 11-37 (213)
498 PRK13538 cytochrome c biogenes 95.8 0.01 2.2E-07 47.8 3.5 28 29-61 24-51 (204)
499 cd01128 rho_factor Transcripti 95.8 0.01 2.3E-07 49.4 3.7 28 30-62 14-41 (249)
500 PRK07994 DNA polymerase III su 95.8 0.017 3.7E-07 54.4 5.5 32 28-64 34-65 (647)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=1.7e-47 Score=313.94 Aligned_cols=243 Identities=95% Similarity=1.397 Sum_probs=231.0
Q ss_pred cccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCch
Q 025529 3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL 82 (251)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~ 82 (251)
|..+.|+++.|..|++.++.+.+.+..+++++|+++ |||||||+|+|+.|+++||++|+++++++|.++..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-----G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~ 76 (244)
T PLN02674 2 SAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILI-----GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL 76 (244)
T ss_pred cccccccccCchHHHHHHHHHHHhhccccCceEEEE-----CCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChh
Confidence 456778999999999999999887666667899999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 83 GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 83 ~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
|..+++++..|..+|++++..++.+++...++.+|||+||||++..|+..|...+...+..++.+|+|++|++++.+|+.
T Consensus 77 g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~ 156 (244)
T PLN02674 77 GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERIT 156 (244)
T ss_pred hHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHh
Confidence 99999999999999999999999999988877789999999999999999998887778889999999999999999999
Q ss_pred cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHH
Q 025529 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT 242 (251)
Q Consensus 163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~ 242 (251)
.|+.|+.||+.||..+.||..++.|+.|++++.+|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+
T Consensus 157 gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~ 236 (244)
T PLN02674 157 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVT 236 (244)
T ss_pred ccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 025529 243 SEVQKALS 250 (251)
Q Consensus 243 ~~i~~~l~ 250 (251)
+.|.+.|+
T Consensus 237 ~~i~~~l~ 244 (244)
T PLN02674 237 AEVQKALS 244 (244)
T ss_pred HHHHHHhC
Confidence 99998874
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=4.1e-40 Score=271.29 Aligned_cols=225 Identities=31% Similarity=0.563 Sum_probs=199.3
Q ss_pred chhHHHHHHHHhhccC--CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH
Q 025529 14 SVDLMTELLRRMKCAS--KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 91 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~ 91 (251)
+.++.+.+...-...+ .++|+|+|+ |||||||||+|+.|++.||+.|+++++++|+++...+++|..+++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ii~~-----G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~ 83 (261)
T PLN02459 9 TSALADDLASACDRSLAKGRNVNWVFL-----GCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN 83 (261)
T ss_pred cccchhhccccccCCccccCccEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH
Confidence 3444444444443333 356889999 999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCHHHHHHHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529 92 KGELVSDDLVVGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 169 (251)
Q Consensus 92 ~~~~~~~~~~~~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 169 (251)
+|..+|++++..++..++... ...+|||+||||++..|+..|... ..++.+|+|++|++++++|+.+|+.|+.
T Consensus 84 ~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~ 158 (261)
T PLN02459 84 QGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSE 158 (261)
T ss_pred cCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccc
Confidence 999999999999999999765 345799999999999999988764 3579999999999999999999999999
Q ss_pred CCceecccC-------------CCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC
Q 025529 170 SGRTYHTKF-------------APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK 236 (251)
Q Consensus 170 ~~~~~~~~~-------------~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~ 236 (251)
||+.||..+ +||..+. +.|++++..|.+|+++.+++|+..|++...++.+||.+.+.++.||+++
T Consensus 159 ~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~ 236 (261)
T PLN02459 159 CGKNFNVADIDLKGEDGRPGIVMPPLLPP--PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPG 236 (261)
T ss_pred cCccccccccccccccccccccCCCCCCC--cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCC
Confidence 999999863 6665543 5688999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhc
Q 025529 237 PPQEVTSEVQKALS 250 (251)
Q Consensus 237 ~~eev~~~i~~~l~ 250 (251)
++++|++.|.++|+
T Consensus 237 ~~~eV~~~i~~~l~ 250 (261)
T PLN02459 237 GIPETWPRLLQALN 250 (261)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999874
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=5.5e-40 Score=265.96 Aligned_cols=209 Identities=37% Similarity=0.655 Sum_probs=195.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+++.|++.+++.++++++++++.+...++.|..+++++.+|..+|++++..++.+.+...
T Consensus 1 m~i~l~-----G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~ 75 (211)
T PRK14526 1 MKLVFL-----GPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTI 75 (211)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcc
Confidence 467888 999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.+.++||+||||++..|+..|...+ ....+|+|++|++++.+|+.+|+.|+.||+.||..++||..++.|+.|++
T Consensus 76 ~~~~g~ilDGfPR~~~Qa~~l~~~~-----~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 150 (211)
T PRK14526 76 KNNDNFILDGFPRNINQAKALDKFL-----PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKG 150 (211)
T ss_pred cccCcEEEECCCCCHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCC
Confidence 7778999999999999999887642 12467889999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
++..|.+|+++.+++|+..|++...++.+||...+.++.|||+.++++|+++|.+.|++
T Consensus 151 ~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 151 DLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred eeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999989999999999999999999998863
No 4
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.8e-39 Score=265.19 Aligned_cols=214 Identities=53% Similarity=0.898 Sum_probs=202.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+++ |+|||||||+|+.|+++||+.++++++++++.+...++.|..+++++.+|..+|++++..++.+.+...
T Consensus 1 ~~I~v~-----G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~ 75 (215)
T PRK00279 1 MRLILL-----GPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQP 75 (215)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 467888 999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
++..+||+||||++..|+..|.+.+...+..++.+|+|++|.+++.+|+..|..|+.||+.|+..++||..++.++.|++
T Consensus 76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 155 (215)
T PRK00279 76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGE 155 (215)
T ss_pred CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCC
Confidence 66679999999999999999988877777788999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
++..|.+|+++.+++|+..|+..+.++.+||...+.++.|||+.++++|++.|...|.+
T Consensus 156 ~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 156 ELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988999999999999999999998863
No 5
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.2e-39 Score=264.72 Aligned_cols=212 Identities=34% Similarity=0.571 Sum_probs=192.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |||||||||+|+.|+++|+++++++++++++.+..++++|..+++++.+|..+|++++..++.+++...
T Consensus 1 m~I~l~-----G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 1 MNILIF-----GPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc
Confidence 578888 999999999999999999999999999999999889999999999999999999999999999999877
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC-CCCCC-CCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA-PPKVP-GVDDVT 190 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~-~p~~~-~~~~~~ 190 (251)
+ .+|||+||||++..|+..|...+...+..|+++|+|++|++++.+|+..|+.|+.||..|+..+. ||..+ +.|+.|
T Consensus 76 ~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~ 154 (223)
T PRK14529 76 G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVC 154 (223)
T ss_pred C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCc
Confidence 6 78999999999999999999888777788999999999999999999999999988877666554 45444 488999
Q ss_pred CCCcccCCCCc-HHHHHHHHHHHHhc---cHHHHHHHhh-----CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDT-AAVLKSRLEAFHKQ---TEPVIDYYSK-----KGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~-~~~~~~r~~~y~~~---~~~~~~~~~~-----~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
++++.+|.+|+ ++.+++|+..|++. ..++.+||.+ .+.++.|||++++++|++.|.+.|+
T Consensus 155 ~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l~ 223 (223)
T PRK14529 155 GGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223 (223)
T ss_pred CCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 99999999996 78999999999997 4578899996 6889999999999999999998874
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.4e-38 Score=259.02 Aligned_cols=207 Identities=55% Similarity=0.917 Sum_probs=193.3
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS- 113 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~- 113 (251)
|+++ |||||||||+|+.|+++||++++++++++++.+...++.|..+++++.+|..+|++++..++..++....
T Consensus 2 I~i~-----G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~ 76 (210)
T TIGR01351 2 LVLL-----GPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD 76 (210)
T ss_pred EEEE-----CCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence 6677 9999999999999999999999999999999999899999999999999999999999999999998743
Q ss_pred CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCC
Q 025529 114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 193 (251)
Q Consensus 114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 193 (251)
...+||+||||++..|+..|.+.+. ..++.+|+|++|++++.+|+..|+.|+.||+.|+..+.||..++.|+.|+++
T Consensus 77 ~~~~~ilDGfPrt~~Qa~~l~~~~~---~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~ 153 (210)
T TIGR01351 77 NENGFILDGFPRTLSQAEALDALLK---EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGEL 153 (210)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHhc---cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCc
Confidence 4579999999999999998887642 1589999999999999999999999999999999999999888888889999
Q ss_pred cccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 194 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 194 ~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
+..|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|++.|.+.|
T Consensus 154 l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 154 LIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999899999999999999999999876
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.9e-37 Score=253.85 Aligned_cols=210 Identities=29% Similarity=0.576 Sum_probs=190.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
..+|+|+++ |||||||||+|+.|+++||++++++++++++++...+++|..+++++.+|..+|++++..++.+.+
T Consensus 4 ~~~mrIvl~-----G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l 78 (229)
T PTZ00088 4 KGPLKIVLF-----GAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEI 78 (229)
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 467889999 999999999999999999999999999999999988999999999999999999999999999998
Q ss_pred cC--CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC-------CC
Q 025529 110 KK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF-------AP 180 (251)
Q Consensus 110 ~~--~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~-------~~ 180 (251)
.. .....+||+||||++..|+..|.+. ..++++|+|++|.+++++|+..|+.|+.||+.||..+ .|
T Consensus 79 ~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~p 153 (229)
T PTZ00088 79 AKVTDDCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMP 153 (229)
T ss_pred HhhccccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCC
Confidence 77 4456799999999999999987653 4689999999999999999999999999999999974 34
Q ss_pred CCC-CCCCCCCC--CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCc-EEEE---cCCCChhHHHHHHHHHh
Q 025529 181 PKV-PGVDDVTG--EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI-VAQL---HAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 181 p~~-~~~~~~~~--~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~-~~~i---d~~~~~eev~~~i~~~l 249 (251)
|.. ++.|+.|+ +++..|.+|+++.+++|+..|++...++.+||.+.|. ++.| |+++++++|++.|.+.+
T Consensus 154 p~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 154 PILPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CCCCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 433 46778888 4788999999999999999999999999999999999 9888 79999999999998754
No 8
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=242.41 Aligned_cols=206 Identities=40% Similarity=0.728 Sum_probs=185.5
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHH-----HcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIID 106 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~ 106 (251)
+++|+|+ |+|||||||+|+.|+++||++|++++++++... ...+..+. .++.+..|..+|+.....++.
T Consensus 3 ~~~I~i~-----G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~ 76 (215)
T PRK14530 3 QPRILLL-----GAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVE 76 (215)
T ss_pred CCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence 3478889 999999999999999999999999999999876 23344554 677888999999999999888
Q ss_pred HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCC
Q 025529 107 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 186 (251)
Q Consensus 107 ~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~ 186 (251)
..+.. ..+||+||||++..|+..|... ..++.+|+|++|.+++.+|+..|+.++.+|+.|+..+.||..++.
T Consensus 77 ~~l~~---~~~~IldG~pr~~~q~~~l~~~-----~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 148 (215)
T PRK14530 77 EALSD---ADGFVLDGYPRNLEQAEYLESI-----TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGV 148 (215)
T ss_pred HHHhc---CCCEEEcCCCCCHHHHHHHHHh-----cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCccccc
Confidence 77644 3589999999999998877654 357999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
++.|++++..|.+|.++.+++|+..|++.+.++.+||.+.+.++.|||+.++++|++.|...|.+
T Consensus 149 ~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 149 CDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988999999999999999999998863
No 9
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.3e-34 Score=219.24 Aligned_cols=187 Identities=34% Similarity=0.597 Sum_probs=171.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDE 107 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~~ 107 (251)
+..++.|.++ |+|||||-|+|..++++|++.|+|+++|+|++... +++.|..+++++.+|..+|.++...+++.
T Consensus 5 ~~~~~IifVl-----GGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~ 79 (195)
T KOG3079|consen 5 LDKPPIIFVL-----GGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEE 79 (195)
T ss_pred ccCCCEEEEE-----cCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHH
Confidence 3456777788 99999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529 108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 187 (251)
Q Consensus 108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~ 187 (251)
.+......++|+|||||+...|...|+..+. ..+++++|++|+.|++.+|+..|...
T Consensus 80 am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~---~~~~fvl~fdc~ee~~l~Rll~R~q~-------------------- 136 (195)
T KOG3079|consen 80 AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ---GDPDFVLFFDCPEETMLKRLLHRGQS-------------------- 136 (195)
T ss_pred HHHhcCCCCeEEecCCCCChHHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHhhccc--------------------
Confidence 9988776677999999999999999998753 26899999999999999999998521
Q ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|.+|+.+.+++|+.-|++...++++||++.|+++.||++.++++|+++|.+.|.
T Consensus 137 -------~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 137 -------NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred -------CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 12679999999999999999999999999999999999999999999999998874
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=232.59 Aligned_cols=211 Identities=53% Similarity=0.927 Sum_probs=198.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
.++.+++++ |+||+||+|+|..+++.|++.|+++++++|..+...++.|..+++++..|+.+|++++..++...+
T Consensus 13 ~~~~~~v~~-----G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l 87 (235)
T KOG3078|consen 13 KKGVRAVLL-----GAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRL 87 (235)
T ss_pred ccceEEEEE-----eCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhc
Confidence 368899999 999999999999999999999999999999999999999999999999999999999999777777
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
....+.++|++||||++..|...+. .++..+|.+|.|.+|.+.+.+|+..|+.|+.+|+.||..|+||..++.++.
T Consensus 88 ~~~~~~~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDi 163 (235)
T KOG3078|consen 88 ENPRCQKGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDI 163 (235)
T ss_pred cccccccccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCcccccccc
Confidence 7776889999999999999888633 345789999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+++.|++|.+|.++.+..|+..|+++..++.+||...+.+..+++.. .++||..|...++
T Consensus 164 tgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~ 223 (235)
T KOG3078|consen 164 TGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLS 223 (235)
T ss_pred ccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 8999999988774
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=4.1e-34 Score=243.40 Aligned_cols=192 Identities=45% Similarity=0.756 Sum_probs=174.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |||||||||+|+.|++.||++|++++++++.++...++.|..+.+++.+|..+|++++..++.+.+...
T Consensus 1 mrIiv~-----GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~ 75 (333)
T PRK13808 1 MRLILL-----GPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQP 75 (333)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 578888 999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
++..||||||||++..|...|+.++...+..||++|+|++|++++++|+..|+.+... ++.
T Consensus 76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------rg~ 136 (333)
T PRK13808 76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------RGE 136 (333)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------cCC
Confidence 7778999999999999999999888878889999999999999999999988632100 111
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.++++|++.|...|.
T Consensus 137 --~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 137 --EVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLA 192 (333)
T ss_pred --ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 13678899999999999999999999999988899999999999999999998874
No 12
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=6.4e-33 Score=221.44 Aligned_cols=185 Identities=43% Similarity=0.771 Sum_probs=169.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
++|+++ |||||||||+|+.|+++||+++++++++++..+..++++|..++.++..|..+|+.++..++...+...
T Consensus 2 ~~i~i~-----G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~ 76 (186)
T PRK14528 2 KNIIFM-----GPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREA 76 (186)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCc
Confidence 357777 999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.+..+||+||||++..|+..|.+++...+..++.+|+|+||++++.+|+..|..+
T Consensus 77 ~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~------------------------- 131 (186)
T PRK14528 77 DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI------------------------- 131 (186)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-------------------------
Confidence 7778999999999999999999888777778999999999999999999998632
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
..|.+|+++.+++|+..|+....++.++|...+.++.|||++++++|++.|.+.+
T Consensus 132 --~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 132 --EGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred --cCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 1256889999999999999999999999999999999999999999999998753
No 13
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1e-32 Score=220.94 Aligned_cols=186 Identities=41% Similarity=0.719 Sum_probs=170.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+++ |+|||||||+|+.|++++|+.++++++++++.+..+++.+..+++++..|..+|++++..++...+...
T Consensus 1 ~~i~~~-----G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (188)
T PRK14532 1 MNLILF-----GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEA 75 (188)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence 468888 999999999999999999999999999999999989999999999999999999999999999998877
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
....|+|+||||++..|...+.+.+...+..|+.+|+|++|++++.+|+..|..+
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~------------------------- 130 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE------------------------- 130 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-------------------------
Confidence 7778999999999999999998888878888999999999999999999988421
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|++++.+.+.+|+..|+....++.++|.+.+.++.||++.+++++++.|.+.|+
T Consensus 131 --~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 131 --QGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 12567888899999999999999999999988889999999999999999998875
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=218.82 Aligned_cols=180 Identities=42% Similarity=0.742 Sum_probs=165.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
++|+++ |+|||||||+|+.|+++||++++++++++++++...++++..++.++..|..+|+.++..++...+...
T Consensus 3 ~~i~i~-----G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~ 77 (183)
T PRK14531 3 QRLLFL-----GPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL 77 (183)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc
Confidence 468888 999999999999999999999999999999999999999999999999999999999999988887654
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
...+||+||||++..|+..|..++...+..++.+|+|+||++++.+|+..|.
T Consensus 78 -~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~--------------------------- 129 (183)
T PRK14531 78 -NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG--------------------------- 129 (183)
T ss_pred -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------
Confidence 3568999999999999999998887777788999999999999999999884
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
|.+|+++.+++|++.|++...++.++|...+.++.||++.+++++++.|.+.|
T Consensus 130 ----r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 130 ----RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 35778899999999999999999999998889999999999999999998876
No 15
>PLN02842 nucleotide kinase
Probab=100.00 E-value=7.5e-32 Score=239.79 Aligned_cols=199 Identities=37% Similarity=0.670 Sum_probs=180.9
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCCceEE
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFIL 120 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~-~~~~~Ii 120 (251)
|.|+|||||||+|+.|+++|++.|++++++++.++..+++.|..+++++.+|..+|+..+..++..++.... ..++||+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 349999999999999999999999999999999999999999999999999999999999999999887654 3478999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCC
Q 025529 121 DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD 200 (251)
Q Consensus 121 dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~ 200 (251)
||||++..|+..|.. .+..||++|+|++|++++++|+.+|+.|+.||..||..+.||..+. +++++..|.+|
T Consensus 82 DGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD 153 (505)
T PLN02842 82 DGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDD 153 (505)
T ss_pred eCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCC
Confidence 999999999887664 3467999999999999999999999999999999999999986544 34678899999
Q ss_pred cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 201 TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 201 ~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+++.+++|+..|++...++.++|.. .++.||++.++++|++.|.+.|.
T Consensus 154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~ 201 (505)
T PLN02842 154 TEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLS 201 (505)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999964 78999999999999999998874
No 16
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=4.4e-31 Score=211.91 Aligned_cols=187 Identities=37% Similarity=0.628 Sum_probs=169.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
.+++.|+++ |||||||||+|+.|+++|++.+++.+++++.....+++++..++.++.++..+|++++..++.+.+
T Consensus 4 ~~~~~i~i~-----G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l 78 (191)
T PRK14527 4 TKNKVVIFL-----GPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDEL 78 (191)
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 467789999 999999999999999999999999999999999888999999999999999999999999999888
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
...++ .+||+||||++..|...+..++...+..++.+|+|++|++++.+|+.+|...
T Consensus 79 ~~~~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~---------------------- 135 (191)
T PRK14527 79 AGMEP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ---------------------- 135 (191)
T ss_pred hcCCC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc----------------------
Confidence 76554 5799999999999999898888777788899999999999999999998521
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
..|.+++.+.+++|++.|++...++.+||.+.+.++.|||+.++++|++.|...|
T Consensus 136 -----~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 136 -----EGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 1356788999999999999999999999999899999999999999999998876
No 17
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=2.2e-31 Score=213.96 Aligned_cols=193 Identities=54% Similarity=0.914 Sum_probs=173.7
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 114 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~ 114 (251)
|+++ |+|||||||+|+.|+++||+.++++++++++.+...++.+..+++++.++..+++.++..++...+.....
T Consensus 2 I~i~-----G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~ 76 (194)
T cd01428 2 ILLL-----GPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDC 76 (194)
T ss_pred EEEE-----CCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 5666 99999999999999999999999999999999988889999999999999999999999999998877655
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCc
Q 025529 115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 194 (251)
Q Consensus 115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 194 (251)
..+||+||||++..|...|...+.. ...++++|+|++|++++.+|+..|..++.+|..|+. +.++.|+.++
T Consensus 77 ~~~~vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l 147 (194)
T cd01428 77 KKGFILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPL 147 (194)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCcc
Confidence 6799999999999999988876532 236899999999999999999999999999999998 2334567888
Q ss_pred ccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529 195 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241 (251)
Q Consensus 195 ~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev 241 (251)
..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++
T Consensus 148 ~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 148 SQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred ccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 88999999999999999999999999999998999999999998764
No 18
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=5.2e-31 Score=210.32 Aligned_cols=182 Identities=45% Similarity=0.807 Sum_probs=167.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
++++|+ |+|||||||+|+.|+++||+++++++++++..+..+++.|..++.++.+|..+|++++..++..++...
T Consensus 2 ~~i~i~-----G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~ 76 (184)
T PRK02496 2 TRLIFL-----GPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQP 76 (184)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence 578888 999999999999999999999999999999999989999999999999999999999999999998877
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
++..+||+||||++..|...+...+...+..++.+|+|++|.+++.+|+..|.
T Consensus 77 ~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~--------------------------- 129 (184)
T PRK02496 77 DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG--------------------------- 129 (184)
T ss_pred CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------
Confidence 66789999999999999988888776666788999999999999999999884
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.++..+.+++|+..|+....++.++|...+.++.|||+.++++|++.|.+.|.
T Consensus 130 ----~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 130 ----RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 246678899999999999999999999888889999999999999999998874
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=8.4e-31 Score=208.84 Aligned_cols=181 Identities=31% Similarity=0.568 Sum_probs=160.3
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceE
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI 119 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~I 119 (251)
|+|.|+|||||||+|+.|++++|+.++++++++++.+...++.+..+++++.+|..+|++++..++...+.... .++||
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~v 80 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKFL 80 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcEE
Confidence 44459999999999999999999999999999999998888899999999999999999999999998887655 67899
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529 120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 199 (251)
Q Consensus 120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~ 199 (251)
+||||++..+...|..++. .+..|+.+|+|++|++++.+|+..|... ..|.+
T Consensus 81 lDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~~---------------------------~~r~d 132 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQS---------------------------SGRVD 132 (183)
T ss_pred EeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCcc---------------------------CCCCC
Confidence 9999999999998887764 3357899999999999999999988521 11356
Q ss_pred CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 200 ~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
++.+.+++|+..|.+...++.++|...+.++.||++.+++++++.|.+.|
T Consensus 133 d~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 133 DNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 67899999999999999999999998888999999999999999999876
No 20
>PLN02200 adenylate kinase family protein
Probab=99.98 E-value=4.1e-30 Score=211.72 Aligned_cols=182 Identities=31% Similarity=0.559 Sum_probs=162.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
.++.|++. |+|||||||+|+.|+++||++|+++++++++.+...++.+..+.+.+..|..+|++.+..++...+.
T Consensus 42 ~~~ii~I~-----G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~ 116 (234)
T PLN02200 42 TPFITFVL-----GGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEME 116 (234)
T ss_pred CCEEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 45667777 9999999999999999999999999999999999889999999999999999999999999888886
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
... ..+||+||||++..|+..|.+.+ +..||++|+|++|++++.+|+..|+.
T Consensus 117 ~~~-~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~------------------------ 168 (234)
T PLN02200 117 SSD-NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ------------------------ 168 (234)
T ss_pred cCC-CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC------------------------
Confidence 543 46899999999999998887654 35789999999999999999998851
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.|.+++.+.+++|++.|+....++.++|+..+.++.|||+.++++|++.|.+.|.
T Consensus 169 -----~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~ 223 (234)
T PLN02200 169 -----GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA 223 (234)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 1456778999999999999999999999988899999999999999999998764
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=199.14 Aligned_cols=177 Identities=42% Similarity=0.786 Sum_probs=166.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+|+.|+++++++|++++++++......+++|..++.++.+|..+|+.+...++..++...
T Consensus 1 ~riiil-----G~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 1 MRILIL-----GPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEA 75 (178)
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhh
Confidence 578999 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
++..+||+||||++..|++.+...+...+...+.++.++++.+.+..|+..|..
T Consensus 76 d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~-------------------------- 129 (178)
T COG0563 76 DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV-------------------------- 129 (178)
T ss_pred cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------
Confidence 766699999999999999999999888888999999999999999999999851
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
|.+|.++.+++|+..|+....++..+|. +.||+..+++++++.+.+.+
T Consensus 130 ----r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 130 ----REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ----cccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999999996 78999999999999998876
No 22
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=5.8e-29 Score=192.35 Aligned_cols=148 Identities=45% Similarity=0.863 Sum_probs=134.1
Q ss_pred CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCC
Q 025529 44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGF 123 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~ 123 (251)
|||||||||+|+.|+++||+.||++++++++.+...++.|..+++++.+|..+|++++.+++...+....+.+|||+|||
T Consensus 3 G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGf 82 (151)
T PF00406_consen 3 GPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGF 82 (151)
T ss_dssp ESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB
T ss_pred CCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766789999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHH
Q 025529 124 PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAA 203 (251)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~ 203 (251)
|++..|+..|...+...+..|+.+|+|+||++++.+|+.. ++.+
T Consensus 83 Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~~~ 126 (151)
T PF00406_consen 83 PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DNEE 126 (151)
T ss_dssp -SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GSHH
T ss_pred cccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CCHH
Confidence 9999999999987777778999999999999999999874 4568
Q ss_pred HHHHHHHHHHhccHHHHHHHhhCC
Q 025529 204 VLKSRLEAFHKQTEPVIDYYSKKG 227 (251)
Q Consensus 204 ~~~~r~~~y~~~~~~~~~~~~~~~ 227 (251)
.+++|+..|+++..++.++|.+.|
T Consensus 127 ~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 127 VIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999765
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=1e-26 Score=185.78 Aligned_cols=183 Identities=36% Similarity=0.578 Sum_probs=156.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
.+.++++ |+|||||||+|+.|++++|+.++++++++++.+...++.+..++..+.++..+|...+...+...+..
T Consensus 3 ~~ii~i~-----G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 77 (188)
T TIGR01360 3 CKIIFIV-----GGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVA 77 (188)
T ss_pred CcEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 3467777 99999999999999999999999999999998777788888899999999899988888888776654
Q ss_pred -CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 112 -PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 112 -~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
.....+||+||||++..|...+... ...|+.+|+|++|++.+.+|+..|...
T Consensus 78 ~~~~~~~~i~dg~~~~~~q~~~~~~~----~~~~~~vi~l~~~~~~~~~Rl~~R~~~----------------------- 130 (188)
T TIGR01360 78 ALGTSKGFLIDGYPREVKQGEEFERR----IGPPTLVLYFDCSEDTMVKRLLKRAET----------------------- 130 (188)
T ss_pred ccCcCCeEEEeCCCCCHHHHHHHHHc----CCCCCEEEEEECCHHHHHHHHHccccc-----------------------
Confidence 3455789999999999888876542 246899999999999999999988410
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|.+++.+.+.+|+..|+....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus 131 ----~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 131 ----SGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 12467788899999999999999999999877889999999999999999998875
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.75 E-value=4.5e-17 Score=132.66 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=114.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec--hhHHHHHHHHcCCchHHHHHHHHHcC--CCcCHHHHHHHH-
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSDDLVVGII- 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~--~~~li~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~ll- 105 (251)
++..|+|+ |++||||||+++.|++.+.-.-.- ....+....+.++++|+.+++++... ...++.....++
T Consensus 2 ~g~~i~~e-----G~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf 76 (212)
T PRK13974 2 KGKFIVLE-----GIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLY 76 (212)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence 36788999 999999999999999988421100 00101111234678999999998632 223333322222
Q ss_pred -HHH-------HcC-CCCCCceEE----------eCCCCCHH--HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 106 -DEA-------MKK-PSCQKGFIL----------DGFPRTEV--QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 106 -~~~-------l~~-~~~~~~~Ii----------dg~~~~~~--~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..+ +.. ...+..+|. +|+|+... ....+.... ..+..|+++|+|+||++++.+|+..|
T Consensus 77 ~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~-~~~~~pd~~i~ld~~~~~~~~R~~~R 155 (212)
T PRK13974 77 AADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIA-TQGLSPDLTFFLEISVEESIRRRKNR 155 (212)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 111 111 111222333 45555432 234444332 23467999999999999999998876
Q ss_pred cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529 165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE 244 (251)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~ 244 (251)
. ++ .++++...|++...+.+.+|.+.+.++.||++.++++++++
T Consensus 156 ~---------------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~ 199 (212)
T PRK13974 156 K---------------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNE 199 (212)
T ss_pred c---------------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHH
Confidence 2 22 24456677888888888899988899999999999999999
Q ss_pred HHHHhc
Q 025529 245 VQKALS 250 (251)
Q Consensus 245 i~~~l~ 250 (251)
|.+.|.
T Consensus 200 I~~~l~ 205 (212)
T PRK13974 200 IKETLL 205 (212)
T ss_pred HHHHHH
Confidence 988874
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.75 E-value=4.2e-16 Score=124.22 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=107.7
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CC-----chHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~-----~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
+|+|+|+|||||||+++ +++++|++++++++++++.+.. +. .+|......... +....+..++...+..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~- 77 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE- 77 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh-
Confidence 34555999999999987 7788999999999999998743 22 244444443321 1223343444344433
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.....+|+||+ +...+...+.+.+ ..+..+|++++|.+++.+|+..|...
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~~~----~~~~~~i~v~~~~~~~~~Rl~~R~~~------------------------- 127 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRKEF----PEDFILIAIHAPPEVRFERLKKRGRS------------------------- 127 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHHhC----CcccEEEEEECCHHHHHHHHHHcCCC-------------------------
Confidence 23457999998 6777777666543 12458999999999999999987310
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
....+.+.+.+|...... .+..+.+... . +.|+.+.+.+++..+|.+.++
T Consensus 128 ----~d~~~~~~~~~r~~~q~~--~~~~~~~~~a-d-~vI~N~~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 128 ----DDPKSWEELEERDERELS--WGIGEVIALA-D-YMIVNDSTLEEFRARVRKLLE 177 (184)
T ss_pred ----CChhhHHHHHHHHHHHhc--cCHHHHHHhc-C-EEEeCCCCHHHHHHHHHHHHH
Confidence 001235667777654321 1122333222 2 345667899999999987764
No 26
>PRK03839 putative kinase; Provisional
Probab=99.74 E-value=1.6e-16 Score=126.21 Aligned_cols=151 Identities=18% Similarity=0.266 Sum_probs=94.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+++ |+|||||||+++.|+++++++++++|+++++. .++..... . .....+.+...+...
T Consensus 1 m~I~l~-----G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~----~----~~~~~~~l~~~~~~~ 62 (180)
T PRK03839 1 MIIAIT-----GTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD----E----MEIDFDKLAYFIEEE 62 (180)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh----h----hhcCHHHHHHHHHHh
Confidence 467777 99999999999999999999999999987652 11111100 0 011122222222221
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
....++|+||+.... ..++.+|+|+++++++.+|+..|...
T Consensus 63 ~~~~~vIidG~~~~l--------------~~~~~vi~L~~~~~~~~~Rl~~R~~~------------------------- 103 (180)
T PRK03839 63 FKEKNVVLDGHLSHL--------------LPVDYVIVLRAHPKIIKERLKERGYS------------------------- 103 (180)
T ss_pred ccCCCEEEEeccccc--------------cCCCEEEEEECCHHHHHHHHHHcCCC-------------------------
Confidence 224569999974311 35789999999999999999877310
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
++. ..+....++. . ..+.+.|...+.++.||++ .++++++++|.+.|.
T Consensus 104 ----~~~-~~~~~~~~~~---~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 104 ----KKK-ILENVEAELV---D--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred ----HHH-HHHHHHHHHH---H--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 001 0111111111 1 1123445555678899996 799999999998875
No 27
>PRK13973 thymidylate kinase; Provisional
Probab=99.71 E-value=9.1e-16 Score=125.08 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=104.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcC--CCcCH--------
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSD-------- 98 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~--~~~~~-------- 98 (251)
++.|+|+ |++||||||+++.|++++ |+.++.+.. +.+++.|+.+++.+..+ .....
T Consensus 3 g~~IviE-----G~dGsGKtTq~~~l~~~l~~~g~~~~~~~~------p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~ 71 (213)
T PRK13973 3 GRFITFE-----GGEGAGKSTQIRLLAERLRAAGYDVLVTRE------PGGSPGAEAIRHVLLSGAAELYGPRMEALLFA 71 (213)
T ss_pred ceEEEEE-----cCCCCCHHHHHHHHHHHHHHCCCeEEEEEC------CCCCchHHHHHHHHcCCCccCCCHHHHHHHHH
Confidence 6789999 999999999999999999 887776621 11233444444444321 11111
Q ss_pred ----HHHHHHHHHHHcCCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 99 ----DLVVGIIDEAMKKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 99 ----~~~~~ll~~~l~~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
..+...+...+.. +.-+|.|+|..+ ..+...+.... .....||++|+|++|++++.+|+.
T Consensus 72 a~r~~~~~~~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PD~vi~Ldv~~e~~~~Rl~ 147 (213)
T PRK13973 72 AARDDHVEEVIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVA-INGVMPDLTLILDIPAEVGLERAA 147 (213)
T ss_pred HHHHHHHHHHHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHH
Confidence 1222333333322 223455765422 11222332221 223679999999999999999999
Q ss_pred cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC-CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD-DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241 (251)
Q Consensus 163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~-~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev 241 (251)
.|..... . .+.+ +..+..+++...|.+.. +++ .+.++.||++.++++|
T Consensus 148 ~R~~~~~-~------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~~e~V 196 (213)
T PRK13973 148 KRRGSDT-P------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATASPEAV 196 (213)
T ss_pred hccCCCc-c------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCCHHHH
Confidence 8852110 0 0112 23455566666665532 222 2368899999999999
Q ss_pred HHHHHHHhc
Q 025529 242 TSEVQKALS 250 (251)
Q Consensus 242 ~~~i~~~l~ 250 (251)
+++|.+.|.
T Consensus 197 ~~~I~~~i~ 205 (213)
T PRK13973 197 AAEIWAAVD 205 (213)
T ss_pred HHHHHHHHH
Confidence 999988774
No 28
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.68 E-value=4.5e-15 Score=112.29 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=74.4
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCce
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 118 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~ 118 (251)
+|+|+|+|||||||+|+.||++||+++++.+.++|+......---..+.++-+.+..+ | ..+..+.........+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i-D----~~iD~rq~e~a~~~nv 76 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI-D----KEIDRRQKELAKEGNV 76 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh-h----HHHHHHHHHHHHcCCe
Confidence 3566699999999999999999999999999999987664322223333343333332 2 2222222222224568
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 119 Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
|++|.... ++.. ...++.|||.+|.++..+|+..|.
T Consensus 77 VlegrLA~---------Wi~k--~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 77 VLEGRLAG---------WIVR--EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred EEhhhhHH---------HHhc--cccceEEEEeCcHHHHHHHHHHhc
Confidence 88875321 2211 346899999999999999999884
No 29
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.67 E-value=3.3e-15 Score=115.59 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=73.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-cCHHHHHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDEAMK 110 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ll~~~l~ 110 (251)
.+.|+++ |++||||||+++.||+.++++++++|.++.+ ..|..+.+++...++ -....-.+++.+.+.
T Consensus 2 ~~~IvLi-----G~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~------~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~ 70 (172)
T COG0703 2 NMNIVLI-----GFMGAGKSTIGRALAKALNLPFIDTDQEIEK------RTGMSIAEIFEEEGEEGFRRLETEVLKELLE 70 (172)
T ss_pred CccEEEE-----cCCCCCHhHHHHHHHHHcCCCcccchHHHHH------HHCcCHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 4578999 9999999999999999999999999999987 445666666664332 212222333333332
Q ss_pred CCCCCCceEEeCCCC--CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 111 KPSCQKGFILDGFPR--TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~--~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
.. ..+|-.|... .......+ ..+ ..+|||++|.+++.+|+...
T Consensus 71 ~~---~~ViaTGGG~v~~~enr~~l----~~~----g~vv~L~~~~e~l~~Rl~~~ 115 (172)
T COG0703 71 ED---NAVIATGGGAVLSEENRNLL----KKR----GIVVYLDAPFETLYERLQRD 115 (172)
T ss_pred cC---CeEEECCCccccCHHHHHHH----HhC----CeEEEEeCCHHHHHHHhccc
Confidence 22 2455444322 22223322 222 37999999999999999944
No 30
>PRK06217 hypothetical protein; Validated
Probab=99.67 E-value=4.1e-15 Score=118.48 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=105.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
++|+|+ |++||||||+|+.|++++|++++++|++++. ..+.+++ ...+.+.....+...+.
T Consensus 2 ~~I~i~-----G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~-- 62 (183)
T PRK06217 2 MRIHIT-----GASGSGTTTLGAALAERLDIPHLDTDDYFWL--PTDPPFT----------TKRPPEERLRLLLEDLR-- 62 (183)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEEcCceeec--cCCCCcc----------ccCCHHHHHHHHHHHHh--
Confidence 568888 9999999999999999999999999987753 1111111 11233334444444432
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
...+||+||++.... .. ++ ..++.+|||++|.+++.+|+..|.... .|+. + -.+.+
T Consensus 63 -~~~~~vi~G~~~~~~--~~---~~----~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~~-------~-~~~~~----- 118 (183)
T PRK06217 63 -PREGWVLSGSALGWG--DP---LE----PLFDLVVFLTIPPELRLERLRLREFQR-YGNR-------I-LPGGD----- 118 (183)
T ss_pred -cCCCEEEEccHHHHH--HH---HH----hhCCEEEEEECCHHHHHHHHHcCcccc-cCcc-------c-CCCCC-----
Confidence 235799999875421 11 11 346889999999999999999985321 1110 0 00000
Q ss_pred CcccCCCCcHHHHHHHHHHHHh------ccHHHHHHHhhC-CcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHK------QTEPVIDYYSKK-GIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~------~~~~~~~~~~~~-~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
.+.....+.++...|.. .......++... ..++.+++..+++++++.|...|++
T Consensus 119 -----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 119 -----MHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred -----HHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 01122334444444442 222233344432 4678889999999999999998863
No 31
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=3.4e-15 Score=119.92 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=104.2
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC------CcCHHH-------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE------LVSDDL------------- 100 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~------~~~~~~------------- 100 (251)
|+|+|++||||||+++.|++.+|+++++.|.+.+..+.++++.+..+.+.+..+. .+....
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~ 83 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERR 83 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHH
Confidence 4555999999999999999999999999999999999888888888877765322 222111
Q ss_pred -----HHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529 101 -----VVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 171 (251)
Q Consensus 101 -----~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~ 171 (251)
++.++. ..+........+++| .|...+. .+. ..+|.+|+++||.+++++|+..|.
T Consensus 84 ~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~-------~~~D~ii~V~a~~e~r~~Rl~~R~------ 147 (195)
T PRK14730 84 WLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT-------DLCSEIWVVDCSPEQQLQRLIKRD------ 147 (195)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH-------hCCCEEEEEECCHHHHHHHHHHcC------
Confidence 111121 122222111223343 2322211 111 357999999999999999999883
Q ss_pred ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+|+... + +....... .. +.|+.+.+.+++.++|.+.+.
T Consensus 148 ---------------------------g~s~e~~~~ri~~Q---~-~~~~k~~~-aD-~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 148 ---------------------------GLTEEEAEARINAQ---W-PLEEKVKL-AD-VVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred ---------------------------CCCHHHHHHHHHhC---C-CHHHHHhh-CC-EEEECCCCHHHHHHHHHHHHh
Confidence 34556777777652 2 11211111 12 356888899999999987653
No 32
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.65 E-value=1e-15 Score=122.93 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=104.2
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------- 99 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------- 99 (251)
|+|+|++||||||+++.|++ +|+++++.|.+.++.+.++++....+.+.+..+ +.+...
T Consensus 5 i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~ 83 (194)
T PRK00081 5 IGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKK 83 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHH
Confidence 44559999999999999998 999999999999998888887777777666432 223221
Q ss_pred ---HHHHHHHHH----HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529 100 ---LVVGIIDEA----MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 172 (251)
Q Consensus 100 ---~~~~ll~~~----l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~ 172 (251)
+++..+... +.......-+|+|. |...+. . ....+|.+|++++|+++..+|+..|.
T Consensus 84 L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~-------~~~~~D~vi~V~a~~e~~~~Rl~~R~------- 146 (194)
T PRK00081 84 LEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN--G-------LEKLVDRVLVVDAPPETQLERLMARD------- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--C-------chhhCCeEEEEECCHHHHHHHHHHcC-------
Confidence 111111122 21111112344443 332221 1 11347999999999999999999873
Q ss_pred eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+..|+..+... .+..... -+.|+++++++++.+++.+.++
T Consensus 147 --------------------------~~s~e~~~~ri~~Q~~~----~~~~~~a--d~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 147 --------------------------GLSEEEAEAIIASQMPR----EEKLARA--DDVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred --------------------------CCCHHHHHHHHHHhCCH----HHHHHhC--CEEEECCCCHHHHHHHHHHHHH
Confidence 44567888888754321 2211111 2567888899999999988775
No 33
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.65 E-value=2e-14 Score=115.74 Aligned_cols=176 Identities=23% Similarity=0.294 Sum_probs=107.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcC-CCcCHHHHHHH--
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGI-- 104 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~l-- 104 (251)
.++.|+|+ |+.||||||+++.|++++ |+.++-+. .+.++++|..+++++.++ ..+......-+
T Consensus 2 ~g~fI~iE-----GiDGaGKTT~~~~L~~~l~~~g~~v~~tr------EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfa 70 (208)
T COG0125 2 KGMFIVIE-----GIDGAGKTTQAELLKERLEERGIKVVLTR------EPGGTPIGEKIRELLLNGEEKLSPKAEALLFA 70 (208)
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence 57899999 999999999999999998 44443332 144588999999998876 34444332222
Q ss_pred ------HHHHHcC-CCCCCceEEeCCCCCHHHHHH---------HHHH--HHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 105 ------IDEAMKK-PSCQKGFILDGFPRTEVQAQK---------LDEM--LEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 105 ------l~~~l~~-~~~~~~~Iidg~~~~~~~~~~---------l~~~--~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
+...+.. ......+|.|.|..+...+.. +.++ +...+..||+++||++|+++.++|+.+|..
T Consensus 71 adR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 71 ADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 2222221 122345677887655332221 1111 112245899999999999999999999852
Q ss_pred CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529 167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245 (251)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i 245 (251)
.. .|.+.....+.++. +.| ..+.+.+ .+.+++||++.++++|.+.|
T Consensus 151 ~~---------------------------~r~E~~~~~f~~kvr~~Y----~~la~~~--~~r~~vIda~~~~e~v~~~i 197 (208)
T COG0125 151 LR---------------------------DRFEKEDDEFLEKVREGY----LELAAKF--PERIIVIDASRPLEEVHEEI 197 (208)
T ss_pred cc---------------------------chhhhHHHHHHHHHHHHH----HHHHhhC--CCeEEEEECCCCHHHHHHHH
Confidence 10 01111111122222 222 2222222 22589999999999999999
Q ss_pred HHHhc
Q 025529 246 QKALS 250 (251)
Q Consensus 246 ~~~l~ 250 (251)
.++|.
T Consensus 198 ~~~l~ 202 (208)
T COG0125 198 LKILK 202 (208)
T ss_pred HHHHH
Confidence 88774
No 34
>PRK13949 shikimate kinase; Provisional
Probab=99.65 E-value=1.4e-14 Score=113.88 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=70.5
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~~ 112 (251)
+|+++ |+|||||||+++.|++.++++++++|.++.... +..+.+++. .|..........++.+ +..
T Consensus 3 ~I~li-----G~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~- 69 (169)
T PRK13949 3 RIFLV-----GYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAE- 69 (169)
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHh-
Confidence 58888 999999999999999999999999999886632 223333333 2222222233333333 221
Q ss_pred CCCCceEE-eC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 113 SCQKGFIL-DG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 113 ~~~~~~Ii-dg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..++|+ +| .+........+.+ .+++|||++|.+++.+|+..+
T Consensus 70 --~~~~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 70 --FEDVVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred --CCCEEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcC
Confidence 235565 44 3444444544432 368999999999999999854
No 35
>PRK13975 thymidylate kinase; Provisional
Probab=99.63 E-value=2.6e-14 Score=114.90 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=96.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH-H----
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-E---- 107 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~-~---- 107 (251)
+.|+|+ |++||||||+++.|+++++..+... +.++..|..+++++..+ ......+..+.. .
T Consensus 3 ~~I~ie-----G~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~ 68 (196)
T PRK13975 3 KFIVFE-----GIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEH 68 (196)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHH
Confidence 578888 9999999999999999998432110 11234556666665543 222221111110 0
Q ss_pred --HHcCCCCCCceEEeCCCCCHHHH-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC
Q 025529 108 --AMKKPSCQKGFILDGFPRTEVQA-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 178 (251)
Q Consensus 108 --~l~~~~~~~~~Iidg~~~~~~~~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~ 178 (251)
.+........+|.|++..+-.-. ..+...+......|+++|||++|++++.+|+..|..
T Consensus 69 ~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~------------ 136 (196)
T PRK13975 69 VKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK------------ 136 (196)
T ss_pred HHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc------------
Confidence 01110112467888775431100 001111112224689999999999999999997731
Q ss_pred CCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 179 APPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 179 ~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
+.. ..+..++....|.+... ..++.....++.||++ .+++++++.|.+.|.
T Consensus 137 -------------------~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 137 -------------------EIFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred -------------------cccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 111 22333333344444322 2222223357899996 899999999998775
No 36
>PRK08356 hypothetical protein; Provisional
Probab=99.63 E-value=6.9e-15 Score=118.32 Aligned_cols=118 Identities=18% Similarity=0.326 Sum_probs=79.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC----C---chHHH----HHHHHHcCCCcCH-
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----T---PLGIK----AKEAMDKGELVSD- 98 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~----~---~~~~~----i~~~l~~~~~~~~- 98 (251)
+.|.|++. |||||||||+|+.|+ ++|++++++++.++...... + ..+.. ...++..+..+++
T Consensus 4 ~~~~i~~~-----G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~ 77 (195)
T PRK08356 4 EKMIVGVV-----GKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEK 77 (195)
T ss_pred CcEEEEEE-----CCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHh
Confidence 34667777 999999999999996 48999999997543322211 1 11111 1234444444442
Q ss_pred ---HHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 99 ---DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 99 ---~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.++..+..+.+.. ...+++||+ ++..+...|... ...+|++++|.+++.+|+..|.
T Consensus 78 yG~~~~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 78 YGEDILIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred cCcHHHHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcC
Confidence 4455555555522 235999999 999998876542 2479999999999999999884
No 37
>PLN02924 thymidylate kinase
Probab=99.61 E-value=2.3e-14 Score=117.02 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=104.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH-HH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII-DE 107 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll-~~ 107 (251)
+++++.|+|+ |++||||||+++.|++.+....+.+ .+++ +....++.|+.+++++..+..+......-+. ..
T Consensus 13 ~~~g~~IviE-----GiDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~ad 85 (220)
T PLN02924 13 ESRGALIVLE-----GLDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSAN 85 (220)
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4578899999 9999999999999999996443333 1121 1223577888899888765544443222111 01
Q ss_pred H------Hc-CCCCCCceEEeCCCCCHHHHHH-----HH--HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529 108 A------MK-KPSCQKGFILDGFPRTEVQAQK-----LD--EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 108 ~------l~-~~~~~~~~Iidg~~~~~~~~~~-----l~--~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~ 173 (251)
+ +. .+..+..+|.|.|..+-.-... .. ..+......||++|+|++|++++.+|...+. +.
T Consensus 86 R~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~------~~ 159 (220)
T PLN02924 86 RWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG------ER 159 (220)
T ss_pred HHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc------cc
Confidence 1 11 1123345788988664221110 11 1122233579999999999999999954210 00
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.+ . ..+.+|+...+... .. ..++.||++.++++|+++|.+.|.
T Consensus 160 ------------------------~E-~-~~~~~rv~~~Y~~l-------a~-~~~~vIDa~~sieeV~~~I~~~I~ 202 (220)
T PLN02924 160 ------------------------YE-K-LEFQKKVAKRFQTL-------RD-SSWKIIDASQSIEEVEKKIREVVL 202 (220)
T ss_pred ------------------------cc-c-HHHHHHHHHHHHHH-------hh-cCEEEECCCCCHHHHHHHHHHHHH
Confidence 01 1 22233332222111 11 357889999999999999988774
No 38
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.60 E-value=1.2e-14 Score=117.28 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=104.7
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH---------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG--------------- 103 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--------------- 103 (251)
+|+|+|++||||||+++.|++ +|+++++.|.+.+..+.++++....+.+.+..+...+++.+.+
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~ 81 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTA 81 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHH
Confidence 456679999999999999998 7999999999999999988888888887776544333211111
Q ss_pred --------HH----HHHHcCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529 104 --------II----DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 170 (251)
Q Consensus 104 --------ll----~~~l~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 170 (251)
.+ ...+... ..+..+++-..|..... .....+|.+|++++|.++..+|+..|+
T Consensus 82 ~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~----- 147 (200)
T PRK14734 82 LLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR----- 147 (200)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC-----
Confidence 11 1111100 01112222222221110 011357999999999999999999873
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+|+..+..... .... --+.|+++.+++++.+++...++
T Consensus 148 ----------------------------g~s~e~~~~ri~~Q~~~~~----k~~~--ad~vI~N~g~~e~l~~~v~~~~~ 193 (200)
T PRK14734 148 ----------------------------GLDEDDARRRIAAQIPDDV----RLKA--ADIVVDNNGTREQLLAQVDGLIA 193 (200)
T ss_pred ----------------------------CCCHHHHHHHHHhcCCHHH----HHHh--CCEEEECcCCHHHHHHHHHHHHH
Confidence 3456788888876544321 1111 12468889999999988887653
No 39
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.59 E-value=2.1e-14 Score=112.29 Aligned_cols=161 Identities=23% Similarity=0.227 Sum_probs=111.6
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH--------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI-------------- 104 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l-------------- 104 (251)
||+++|+.||||||+++.|. .+|+++|++|.+.|+.+.++++.+..+.+.+......++..+++-
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~ 81 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ 81 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence 68899999999999999998 789999999999999999999999999988876655444333221
Q ss_pred --------------HHHHHcCCCCCCceE-EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529 105 --------------IDEAMKKPSCQKGFI-LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 169 (251)
Q Consensus 105 --------------l~~~l~~~~~~~~~I-idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 169 (251)
+.+.....-.+..+| +| .|...+- .+. .....+|.+.|+.++..+|+..|
T Consensus 82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~-------~~~~~tvvV~cd~~~Ql~Rl~~R----- 146 (225)
T KOG3220|consen 82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLL-------KICHKTVVVTCDEELQLERLVER----- 146 (225)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHH-------hheeeEEEEEECcHHHHHHHHHh-----
Confidence 111111111122232 33 3332221 111 23457888999999999999987
Q ss_pred CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
++.+.+..++|++.. .++.+..+.. =++||++++++++.++|..++
T Consensus 147 ----------------------------d~lse~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 147 ----------------------------DELSEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred ----------------------------ccccHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence 356778888888763 4444444432 246899999999999887654
No 40
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.59 E-value=1.4e-13 Score=108.33 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=90.3
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 113 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~ 113 (251)
+|+++ |++||||||+++.|++++|+++++.|.++.... +..+.+++.... ...+.+.-...+....
T Consensus 4 ~i~~~-----G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g---~~~~~~~e~~~~~~~~ 69 (171)
T PRK03731 4 PLFLV-----GARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREG---WAGFRARESAALEAVT 69 (171)
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHC---HHHHHHHHHHHHHHhc
Confidence 57777 999999999999999999999999998876532 222222222111 1111111111121111
Q ss_pred CCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 114 CQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 114 ~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
....|+. |. +....... ++. ..+++|||++|++.+.+|+..|..+. ++ |.. .
T Consensus 70 -~~~~vi~~ggg~vl~~~~~~----~l~----~~~~~v~l~~~~~~~~~Rl~~r~~~~--~r-------p~~-------~ 124 (171)
T PRK03731 70 -APSTVIATGGGIILTEENRH----FMR----NNGIVIYLCAPVSVLANRLEANPEED--QR-------PTL-------T 124 (171)
T ss_pred -CCCeEEECCCCccCCHHHHH----HHH----hCCEEEEEECCHHHHHHHHccccccc--cC-------CcC-------C
Confidence 2234443 32 22222222 221 23579999999999999998763110 00 000 0
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
+.. ..++..+.+++|...|... ..+.||++.++++++++|.+.|.+
T Consensus 125 ~~~---~~~~~~~~~~~r~~~y~~~------------a~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 125 GKP---ISEEVAEVLAEREALYREV------------AHHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred CCC---hHHHHHHHHHHHHHHHHHh------------CCEEEcCCCCHHHHHHHHHHHHhc
Confidence 000 0011123333333333221 126889999999999999988753
No 41
>PRK13948 shikimate kinase; Provisional
Probab=99.59 E-value=7.6e-14 Score=110.59 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDEA 108 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ll~~~ 108 (251)
+++..|+++ |++||||||+++.|++++|.+++++|.++++.. |..+.+++...+ ....+.-..++...
T Consensus 8 ~~~~~I~Li-----G~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l 76 (182)
T PRK13948 8 RPVTWVALA-----GFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRL 76 (182)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 466789999 999999999999999999999999998887743 344445444322 11122222333332
Q ss_pred HcCCCCCCceEEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 109 MKKPSCQKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 109 l~~~~~~~~~Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
+. ..+.|+. | .+........+. . ...+|||++|.+++.+|+.
T Consensus 77 ~~----~~~~VIa~GgG~v~~~~n~~~l~----~----~g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 77 TR----LDYAVISLGGGTFMHEENRRKLL----S----RGPVVVLWASPETIYERTR 121 (182)
T ss_pred Hh----cCCeEEECCCcEEcCHHHHHHHH----c----CCeEEEEECCHHHHHHHhc
Confidence 21 1234443 2 222232323222 1 2468899999999999995
No 42
>PRK08233 hypothetical protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=114.73 Aligned_cols=164 Identities=13% Similarity=0.160 Sum_probs=86.2
Q ss_pred cccCCCCCChhHHHHHHHHHhC-CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC--CCCc
Q 025529 41 WLAGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS--CQKG 117 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~~-~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~--~~~~ 117 (251)
+|+|+|||||||+|+.|++.++ ..++..|.. ... ............+... .......+...+.... ....
T Consensus 7 ~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 79 (182)
T PRK08233 7 TIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVD 79 (182)
T ss_pred EEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCce
Confidence 3449999999999999999996 333333322 110 0011122222222222 1111122222222111 1124
Q ss_pred eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529 118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197 (251)
Q Consensus 118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r 197 (251)
+|+..+|....... +. ..+|.+|+|++|.+++++|+..|...
T Consensus 80 ~vivd~~~~~~~~~-~~-------~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------------ 121 (182)
T PRK08233 80 YIIVDYPFAYLNSE-MR-------QFIDVTIFIDTPLDIAMARRILRDFK------------------------------ 121 (182)
T ss_pred EEEEeeehhhccHH-HH-------HHcCEEEEEcCCHHHHHHHHHHHHhh------------------------------
Confidence 55544554322111 11 23689999999999999997776310
Q ss_pred CCCcHHHHHHHHHHHHhccHHHH-HHHhh--CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 198 KDDTAAVLKSRLEAFHKQTEPVI-DYYSK--KGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 198 ~~~~~~~~~~r~~~y~~~~~~~~-~~~~~--~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+++..|.....+.+ +++.. ....+.||++.++++++++|.+.|+
T Consensus 122 -~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 122 -EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred -hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 1111234445555554433322 22221 1245679999999999999998875
No 43
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.58 E-value=1.9e-13 Score=107.38 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=68.7
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC-CCCc
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKG 117 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~-~~~~ 117 (251)
+|+|+|++||||||+|+.|++.+|+++++.+++++........-...+......... +...+...+.... ....
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~ 76 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPE-----IDKKIDRRIHEIALKEKN 76 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcH-----HHHHHHHHHHHHHhcCCC
Confidence 355569999999999999999999999999988776543221111111112111211 1222222222221 2357
Q ss_pred eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+|++|..... .+ ...++++|+|++|.+.+.+|+..|.
T Consensus 77 ~Vi~g~~~~~--------~~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 77 VVLESRLAGW--------IV---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred EEEEecccce--------ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 8888864321 01 1346789999999999999999874
No 44
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.58 E-value=2.4e-14 Score=114.81 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=102.8
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH-------------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD------------------- 99 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~------------------- 99 (251)
+|+|+|.|||||||+++.|++ +|++++++|++.|+.+.++++....+.+.+.....-++.
T Consensus 4 iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~ 82 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARL 82 (201)
T ss_pred EEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHH
Confidence 466779999999999999999 999999999999999998877776666665533321111
Q ss_pred ----HHHHHHHHHHc-CCC-CCCceEEeCCCCCHHHHHHHHHHHHhcC-CCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529 100 ----LVVGIIDEAMK-KPS-CQKGFILDGFPRTEVQAQKLDEMLEKQG-KKVDKVLNFAIDDAVLEERITGRWIHPSSGR 172 (251)
Q Consensus 100 ----~~~~ll~~~l~-~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~-~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~ 172 (251)
+++.++...+. ..+ ....+++-..|... ...+ ..+|.+|+++||++..++|+.+|.
T Consensus 83 ~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~----------e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~------- 145 (201)
T COG0237 83 KLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLF----------EAGGEKYFDKVIVVYAPPEIRLERLMKRD------- 145 (201)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHH----------hccccccCCEEEEEECCHHHHHHHHHhcC-------
Confidence 11111112110 000 01112222222211 1111 237899999999999999999883
Q ss_pred eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+....|+......... +...+ +.++++.+++.+.++|.+.+.
T Consensus 146 --------------------------~~~~e~~~~~~~~Q~~~~ek----~~~ad--~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 146 --------------------------GLDEEDAEARLASQRDLEEK----LALAD--VVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred --------------------------CCCHHHHHHHHHhcCCHHHH----HhhcC--ChhhcCCCHHHHHHHHHHHHH
Confidence 45666777777654333332 22211 357888999999998887653
No 45
>PRK00625 shikimate kinase; Provisional
Probab=99.57 E-value=1.1e-13 Score=108.97 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=68.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+++ |+|||||||+++.|+++++++++++|+++++..... ....+.+++...+ ...+...-...+...
T Consensus 1 ~~I~Li-----G~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l 70 (173)
T PRK00625 1 MQIFLC-----GLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSL 70 (173)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHh
Confidence 467777 999999999999999999999999999988754321 1113444443222 111111111122222
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.....+|..|...... .+.+. .+. ....+|||++|.+++.+|+..|.
T Consensus 71 ~~~~~VIs~GGg~~~~-~e~~~-~l~----~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 71 PVIPSIVALGGGTLMI-EPSYA-HIR----NRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred ccCCeEEECCCCccCC-HHHHH-HHh----cCCEEEEEECCHHHHHHHHhcCC
Confidence 2223344444322211 12222 121 12579999999999999999873
No 46
>PLN02422 dephospho-CoA kinase
Probab=99.57 E-value=7.4e-14 Score=114.26 Aligned_cols=161 Identities=20% Similarity=0.151 Sum_probs=101.9
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------- 99 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------- 99 (251)
|+|+|++||||||+++.|+ ++|++++++|++.++.+.++++....+.+.+... +.+...
T Consensus 4 igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~ 82 (232)
T PLN02422 4 VGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQL 82 (232)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHH
Confidence 5566999999999999999 5899999999999999998877666666555322 222221
Q ss_pred ---HHHHHHHHHHc----CC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529 100 ---LVVGIIDEAMK----KP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 170 (251)
Q Consensus 100 ---~~~~ll~~~l~----~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 170 (251)
+++..+...+. .. .....+++| .|...+. +....+|.+|++++|.++..+|+..|+
T Consensus 83 Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~---------~~~~~~D~vI~V~a~~e~ri~RL~~R~----- 147 (232)
T PLN02422 83 LNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET---------KMDKWTKPVVVVWVDPETQLERLMARD----- 147 (232)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc---------chhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 12222222111 11 111233344 3433221 111357999999999999999999884
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+|++.... ....... .. +.|+.+++.+++..++.+.++
T Consensus 148 ----------------------------g~s~eea~~Ri~~Q~~----~eek~~~-AD-~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 148 ----------------------------GLSEEQARNRINAQMP----LDWKRSK-AD-IVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred ----------------------------CCCHHHHHHHHHHcCC----hhHHHhh-CC-EEEECCCCHHHHHHHHHHHHH
Confidence 3455777888744221 1111111 12 467788899999988887654
No 47
>PRK13947 shikimate kinase; Provisional
Probab=99.57 E-value=1.2e-13 Score=108.62 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=65.1
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-cCHHHHHHHHHHHHcCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-VSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ll~~~l~~~ 112 (251)
+|+++ |+|||||||+++.|++.+|+++++.|.+++... |..+.+++..... ........++.. +.
T Consensus 3 ~I~l~-----G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~~-l~-- 68 (171)
T PRK13947 3 NIVLI-----GFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVKK-LA-- 68 (171)
T ss_pred eEEEE-----cCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHHH-Hh--
Confidence 47888 999999999999999999999999998876641 2233333332111 111111122222 21
Q ss_pred CCCCceEEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 113 SCQKGFILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 113 ~~~~~~Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.....|+. | ++........+ .. ...+|||+++++.+.+|+..|.
T Consensus 69 -~~~~~vi~~g~g~vl~~~~~~~l----~~----~~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 69 -RLKNLVIATGGGVVLNPENVVQL----RK----NGVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred -hcCCeEEECCCCCcCCHHHHHHH----Hh----CCEEEEEECCHHHHHHHhcCCC
Confidence 12234432 2 22333222222 22 2479999999999999998663
No 48
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.57 E-value=3.5e-14 Score=121.65 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=107.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
+.|++. |+|||||||+|+.|++++ ++.+++.|++. ..+......+.. .+...+...-.......+...+
T Consensus 3 ~liil~-----G~pGSGKSTla~~L~~~~~~~~~l~~D~~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l-- 72 (300)
T PHA02530 3 KIILTV-----GVPGSGKSTWAREFAAKNPKAVNVNRDDLR-QSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAAL-- 72 (300)
T ss_pred EEEEEE-----cCCCCCHHHHHHHHHHHCCCCEEEeccHHH-HHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHH--
Confidence 356666 999999999999999999 89999997754 333221111110 0000000000111222222222
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCC
Q 025529 112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 191 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~ 191 (251)
..+..+|+|+++....+...+..+....+..+ .+|+|++|.+++.+|+..|..+.
T Consensus 73 -~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~~----------------------- 127 (300)
T PHA02530 73 -KSGKSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGERA----------------------- 127 (300)
T ss_pred -HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcCC-----------------------
Confidence 23457999999999888888877766665544 36889999999999999984221
Q ss_pred CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhH
Q 025529 192 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240 (251)
Q Consensus 192 ~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~ee 240 (251)
-+.+..+...+|++.|.....++...+.....++.+|.+.++.+
T Consensus 128 -----~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 128 -----VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 02333344458888888887788777765556777887777665
No 49
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.57 E-value=2.6e-13 Score=109.76 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=97.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC---ceechhHHHHHHHHcCCchHHHHHHHHHc--CCCcCHHHHHH--
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDK--GELVSDDLVVG-- 103 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~-- 103 (251)
+++.|+|+ |++||||||+++.|++.++. .++.. .+ +.++..|..+++.+.. ....+......
T Consensus 2 ~~~~I~ie-----G~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T PRK00698 2 RGMFITIE-----GIDGAGKSTQIELLKELLEQQGRDVVFT-----RE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFY 70 (205)
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCceeEe-----eC-CCCChHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 46788999 99999999999999998732 22211 11 1134566677776653 22221111111
Q ss_pred -----HHHHHHcC-CCCCCceEEeCCCCCHH------------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 104 -----IIDEAMKK-PSCQKGFILDGFPRTEV------------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 104 -----ll~~~l~~-~~~~~~~Iidg~~~~~~------------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+...+.. ...+..+|+|.++.+.. ....+...+. ....||++|+|++|++++.+|+..|.
T Consensus 71 ~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 71 AARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFAL-GGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11111111 12234678887654321 1112222221 22569999999999999999999884
Q ss_pred CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529 166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245 (251)
Q Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i 245 (251)
.. . +.+.....+.+++..++.. +.+. ....++.||++.++++++++|
T Consensus 150 ~~---~-------------------------~~~~~~~~~~~~~~~~y~~---~~~~--~~~~~~~Id~~~~~e~v~~~i 196 (205)
T PRK00698 150 EL---D-------------------------RIEQEGLDFFERVREGYLE---LAEK--EPERIVVIDASQSLEEVHEDI 196 (205)
T ss_pred Cc---c-------------------------hhhhhhHHHHHHHHHHHHH---HHHh--CCCeEEEEeCCCCHHHHHHHH
Confidence 10 0 0011112333444322221 1111 123678999999999999999
Q ss_pred HHHhc
Q 025529 246 QKALS 250 (251)
Q Consensus 246 ~~~l~ 250 (251)
.+.|.
T Consensus 197 ~~~i~ 201 (205)
T PRK00698 197 LAVIK 201 (205)
T ss_pred HHHHH
Confidence 88774
No 50
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.56 E-value=1.9e-14 Score=115.14 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=100.6
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHHH-----------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLVV----------- 102 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~----------- 102 (251)
+|+|+|++||||||+++.|++..|++++++|.+.++.+.++.+....+.+.+.. .+.+....+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 467779999999999999999877999999999999988887766666555431 2222211111
Q ss_pred -----------HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529 103 -----------GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 171 (251)
Q Consensus 103 -----------~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~ 171 (251)
..+...+........+|+-..|..... .+. ..+|.++++++|.+++.+|+..|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~--~~~-------~~~D~vv~V~~~~~~~~~Rl~~R~------ 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN--KLR-------SLCDRVIVVDVSPQLQLERLMQRD------ 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC--CcH-------HhCCEEEEEECCHHHHHHHHHHcC------
Confidence 111222222211112444333432221 111 346899999999999999999883
Q ss_pred ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529 172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246 (251)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~ 246 (251)
+.+.+.+.+|+...... ...... .. +.|+++.+++++..+|.
T Consensus 146 ---------------------------~~s~~~~~~r~~~q~~~----~~~~~~-ad-~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 ---------------------------NLTEEEVQKRLASQMDI----EERLAR-AD-DVIDNSATLADLVKQLE 187 (188)
T ss_pred ---------------------------CCCHHHHHHHHHhcCCH----HHHHHh-CC-EEEECCCCHHHHHHHHh
Confidence 44567788887764221 111111 12 45678899999988875
No 51
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.56 E-value=1.5e-13 Score=108.33 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=89.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~ 110 (251)
.++|+++ |++||||||+++.|++.+++++++.|..+.+... .. +...+.. |.......-.+++.. +.
T Consensus 4 ~~~I~li-----G~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~----i~~~~~~~g~~~fr~~e~~~l~~-l~ 71 (172)
T PRK05057 4 KRNIFLV-----GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--AD----IGWVFDVEGEEGFRDREEKVINE-LT 71 (172)
T ss_pred CCEEEEE-----CCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cC----HhHHHHHhCHHHHHHHHHHHHHH-HH
Confidence 4579999 9999999999999999999999999987655321 11 1122211 111001111222222 21
Q ss_pred CCCCCCceEEeC-C--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529 111 KPSCQKGFILDG-F--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 187 (251)
Q Consensus 111 ~~~~~~~~Iidg-~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~ 187 (251)
...++++.. + +........ +.. .+.+|||++|.+++.+|+..+...+
T Consensus 72 ---~~~~~vi~~ggg~v~~~~~~~~----l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP------------------- 121 (172)
T PRK05057 72 ---EKQGIVLATGGGSVKSRETRNR----LSA----RGVVVYLETTIEKQLARTQRDKKRP------------------- 121 (172)
T ss_pred ---hCCCEEEEcCCchhCCHHHHHH----HHh----CCEEEEEeCCHHHHHHHHhCCCCCC-------------------
Confidence 123455532 2 122222222 222 2579999999999999997553111
Q ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhcC
Q 025529 188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALSA 251 (251)
Q Consensus 188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~~ 251 (251)
........ ..+..++....++++.+++ +.||++ .+++++.+.|.+.+++
T Consensus 122 -------~~~~~~~~----~~~~~l~~~R~~~Y~~~Ad----~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 122 -------LLQVDDPR----EVLEALANERNPLYEEIAD----VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred -------CCCCCCHH----HHHHHHHHHHHHHHHhhCC----EEEECCCCCHHHHHHHHHHHHhh
Confidence 00111111 1123333333444333322 456764 8999999999888753
No 52
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.56 E-value=6.9e-14 Score=113.57 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=100.2
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc--------CC-CcCHHHH---------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK--------GE-LVSDDLV--------- 101 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~--------~~-~~~~~~~--------- 101 (251)
|+|+|++||||||+++.|.+ +|+++++.|.+.+....++......+...+.. +. .+....+
T Consensus 8 igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~~ 86 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDPE 86 (208)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCHH
Confidence 34459999999999999997 89999999998888766655444444433321 11 0111111
Q ss_pred ---------HHHH----HHHHcCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529 102 ---------VGII----DEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 167 (251)
Q Consensus 102 ---------~~ll----~~~l~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 167 (251)
+..+ ...+... .....+++-+.|...+.. ....+|.+|++++|.+++.+|+..|.
T Consensus 87 ~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~---------~~~~~d~ii~V~a~~e~~~~Rl~~R~-- 155 (208)
T PRK14731 87 KLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESG---------GDAGLDFIVVVAADTELRLERAVQRG-- 155 (208)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecC---------chhcCCeEEEEECCHHHHHHHHHHcC--
Confidence 1111 1111111 112234443344322211 11357999999999999999999884
Q ss_pred CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHH
Q 025529 168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQK 247 (251)
Q Consensus 168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~ 247 (251)
..+.+.+++|+..+......+ ++. . +.|+++.+++++.++|.+
T Consensus 156 -------------------------------~~s~e~~~~Ri~~q~~~~~~~-~~a----d-~vI~N~g~~e~l~~~i~~ 198 (208)
T PRK14731 156 -------------------------------MGSREEIRRRIAAQWPQEKLI-ERA----D-YVIYNNGTLDELKAQTEQ 198 (208)
T ss_pred -------------------------------CCCHHHHHHHHHHcCChHHHH-HhC----C-EEEECCCCHHHHHHHHHH
Confidence 335678899987765544433 221 2 457888999999999987
Q ss_pred Hhc
Q 025529 248 ALS 250 (251)
Q Consensus 248 ~l~ 250 (251)
.++
T Consensus 199 ~~~ 201 (208)
T PRK14731 199 LYQ 201 (208)
T ss_pred HHH
Confidence 764
No 53
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.55 E-value=1.9e-13 Score=107.60 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l 109 (251)
.++.|++. |+|||||||+|+.|++++|+++++.|.+++.... .+. .+.+. .+..........++....
T Consensus 3 ~~~~i~l~-----G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~l~ 71 (175)
T PRK00131 3 KGPNIVLI-----GFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSI----PEIFEEEGEAAFRELEEEVLAELL 71 (175)
T ss_pred CCCeEEEE-----cCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCH----HHHHHHHCHHHHHHHHHHHHHHHH
Confidence 56678888 9999999999999999999999999988765322 121 12111 111111111222232222
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.. ...+|..|..... ... ....+. ....+|||++|.+.+.+|+..+.
T Consensus 72 ~~---~~~vi~~g~~~~~-~~~-~r~~l~----~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 72 AR---HNLVISTGGGAVL-REE-NRALLR----ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred hc---CCCEEEeCCCEee-cHH-HHHHHH----hCCEEEEEECCHHHHHHHhcCCC
Confidence 21 1234443321111 111 112221 12478999999999999998763
No 54
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.55 E-value=2e-13 Score=104.79 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=94.4
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|++. |.||+||||+|+.|+ ++|+.+++..+++.+. .+.....+ ......+..+.+...+...+
T Consensus 1 m~I~IT-----GTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-----~~~~~~de-~r~s~~vD~d~~~~~le~~~--- 65 (180)
T COG1936 1 MLIAIT-----GTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-----GLYTEYDE-LRKSVIVDVDKLRKRLEELL--- 65 (180)
T ss_pred CeEEEe-----CCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-----CCeeccCC-ccceEEeeHHHHHHHHHHHh---
Confidence 456666 999999999999999 8999999998876552 11111000 00011122223333333322
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
...+.|+|++.. .++ ..+|++|.|.++++.+.+||+.|+-.
T Consensus 66 -~~~~~Ivd~H~~---------hl~----~~~dlVvVLR~~p~~L~~RLk~RGy~------------------------- 106 (180)
T COG1936 66 -REGSGIVDSHLS---------HLL----PDCDLVVVLRADPEVLYERLKGRGYS------------------------- 106 (180)
T ss_pred -ccCCeEeechhh---------hcC----CCCCEEEEEcCCHHHHHHHHHHcCCC-------------------------
Confidence 234688887632 111 24899999999999999999998410
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcC-CCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHA-EKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~-~~~~eev~~~i~~~l~ 250 (251)
++.-.++++..+.. .......+++ ..+++||. +.+++++++.|..++.
T Consensus 107 -----~eKI~ENveAEi~~--vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~ 155 (180)
T COG1936 107 -----EEKILENVEAEILD--VILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIG 155 (180)
T ss_pred -----HHHHHHHHHHHHHH--HHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHc
Confidence 11122344433322 1222233344 35788888 5999999999999875
No 55
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.55 E-value=4e-13 Score=107.90 Aligned_cols=123 Identities=23% Similarity=0.228 Sum_probs=67.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCC---ceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHHH----
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLVV---- 102 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~---~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~---- 102 (251)
++.|+|+ |++||||||+++.|++.++. .++-+. .+..++.+..+++.+..+. ........
T Consensus 3 g~~Ivie-----G~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 71 (195)
T TIGR00041 3 GMFIVIE-----GIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFA 71 (195)
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHH
Confidence 6788999 99999999999999999842 232110 1123456666666644322 12211110
Q ss_pred ----HHHHHHHcC-CCCCCceEEeCCCCCHHH---------HHHHHHHHHhcCC-CcCEEEEEecCHHHHHHHHhcCc
Q 025529 103 ----GIIDEAMKK-PSCQKGFILDGFPRTEVQ---------AQKLDEMLEKQGK-KVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 103 ----~ll~~~l~~-~~~~~~~Iidg~~~~~~~---------~~~l~~~~~~~~~-~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+...+.. ...+..+|+|.+..+-.- ...+..+...... .|+++|+|++|++++.+|+..|.
T Consensus 72 ~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 72 ADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111111111 112234667865332210 1111111111112 48999999999999999999874
No 56
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.54 E-value=7.9e-13 Score=106.12 Aligned_cols=174 Identities=20% Similarity=0.237 Sum_probs=96.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHH------
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLV------ 101 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~------ 101 (251)
|.|+|+ |++||||||+++.|++.+ |+.++.+.. ...+..+..+++++.... .......
T Consensus 1 ~~I~ie-----G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (200)
T cd01672 1 MFIVFE-----GIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAA 69 (200)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHH
Confidence 356667 999999999999999998 555544321 112334555666555331 1111110
Q ss_pred --HHHHHHHHcC-CCCCCceEEeCCCCCHH------------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 102 --VGIIDEAMKK-PSCQKGFILDGFPRTEV------------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 102 --~~ll~~~l~~-~~~~~~~Iidg~~~~~~------------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
...+.+.+.. ...+..+|+|.++.+.. ....+.... .....|+.+|+|++|++++.+|+..|..
T Consensus 70 ~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 148 (200)
T cd01672 70 DRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGR 148 (200)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 0111111111 12334677887654321 112222221 2234789999999999999999998852
Q ss_pred CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529 167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246 (251)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~ 246 (251)
.. ........+.+++..++. ++...+ ...++.||++.++++++++|.
T Consensus 149 ~~----------------------------~~~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~ 195 (200)
T cd01672 149 DD----------------------------RDEQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEIL 195 (200)
T ss_pred cc----------------------------hhhhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHH
Confidence 10 000111223333322211 122211 135789999999999999999
Q ss_pred HHhcC
Q 025529 247 KALSA 251 (251)
Q Consensus 247 ~~l~~ 251 (251)
+.|.+
T Consensus 196 ~~i~~ 200 (200)
T cd01672 196 KAILE 200 (200)
T ss_pred HHHhC
Confidence 98753
No 57
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.53 E-value=1.9e-13 Score=112.92 Aligned_cols=163 Identities=13% Similarity=0.057 Sum_probs=103.2
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHH------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV------------ 101 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------------ 101 (251)
+|+|+|++||||||+++.|++++|++++++|.+.++...++++....+.+.+.. .+.+....+
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~~ 82 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARR 82 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 577889999999999999999999999999999999888887776666655532 122222111
Q ss_pred ------HHHH----HHHHcC---------CC-CCC-ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 102 ------VGII----DEAMKK---------PS-CQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 102 ------~~ll----~~~l~~---------~~-~~~-~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
+..+ ...+.. .. .+. .+|+| .|...+.. + ....+|.+|++.+|.++..+|
T Consensus 83 ~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E~~--~------~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 83 ALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFETK--T------FTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhccC--c------hhhcCCeEEEEECCHHHHHHH
Confidence 1111 111110 00 112 34455 34332210 0 012469999999999999999
Q ss_pred HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC--CCh
Q 025529 161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KPP 238 (251)
Q Consensus 161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~--~~~ 238 (251)
+..|. +.+.+.+++|+..... ..+... ...+ .|+.+ +++
T Consensus 154 L~~R~---------------------------------g~s~eea~~Ri~~Q~~----~~ek~~-~aD~-VI~N~~~g~~ 194 (244)
T PTZ00451 154 LRKRN---------------------------------GFSKEEALQRIGSQMP----LEEKRR-LADY-IIENDSADDL 194 (244)
T ss_pred HHHcC---------------------------------CCCHHHHHHHHHhCCC----HHHHHH-hCCE-EEECCCCCCH
Confidence 99873 4466788888865211 122211 1233 46667 899
Q ss_pred hHHHHHHHHHh
Q 025529 239 QEVTSEVQKAL 249 (251)
Q Consensus 239 eev~~~i~~~l 249 (251)
+++..+|.+.+
T Consensus 195 ~~L~~~v~~~~ 205 (244)
T PTZ00451 195 DELRGSVCDCV 205 (244)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 58
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.53 E-value=4.7e-13 Score=99.94 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=104.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
+..|+|++. |.||+||||+|+.||+.+|+.+|.++++++.. .+.....+-. .-..+..+.+.+.+...+
T Consensus 5 r~~PNILvt-----GTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~y-~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 5 RERPNILVT-----GTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEEY-KCHILDEDKVLDELEPLM 73 (176)
T ss_pred hcCCCEEEe-----CCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhcccccc-cCccccHHHHHHHHHHHH
Confidence 456789999 99999999999999999999999999988762 1111111110 113345566667776666
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
.. .|.|+|-+....... ..+|++|.|.+|.+.+..||..|.-+
T Consensus 74 ~~----Gg~IVDyHgCd~Fpe-----------rwfdlVvVLr~~~s~LY~RL~sRgY~---------------------- 116 (176)
T KOG3347|consen 74 IE----GGNIVDYHGCDFFPE-----------RWFDLVVVLRTPNSVLYDRLKSRGYS---------------------- 116 (176)
T ss_pred hc----CCcEEeecccCccch-----------hheeEEEEEecCchHHHHHHHHcCCC----------------------
Confidence 44 578888654433222 24799999999999999999988411
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
...-.+.++..+ +........+.|+. +.++++.++.. |+....|..++
T Consensus 117 --------e~Ki~eNiecEI--fgv~~eea~eSy~~-~iV~eL~s~~~-Eem~~ni~ri~ 164 (176)
T KOG3347|consen 117 --------EKKIKENIECEI--FGVVLEEARESYSP-KIVVELQSETK-EEMESNISRIL 164 (176)
T ss_pred --------HHHHhhhcchHH--HHHHHHHHHHHcCC-cceeecCcCCH-HHHHHHHHHHH
Confidence 000112222222 33344555666654 47888888765 77777665544
No 59
>PRK04040 adenylate kinase; Provisional
Probab=99.53 E-value=1.5e-12 Score=103.90 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=101.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
++.|++. |+|||||||+++.|++++ ++.+++.+++++.......-.. -++.+..-.......+..+....+
T Consensus 2 ~~~i~v~-----G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~--~~d~~r~l~~~~~~~~~~~a~~~i 74 (188)
T PRK04040 2 MKVVVVT-----GVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVE--HRDEMRKLPPEEQKELQREAAERI 74 (188)
T ss_pred CeEEEEE-----eCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCC--CHHHHhhCChhhhHHHHHHHHHHH
Confidence 4566667 999999999999999999 8999999998877654322100 011111111111111222333333
Q ss_pred cCCCCCCceEEeCCCCCHHHHH---HHH-HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQ---KLD-EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~---~l~-~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
........+|+||+........ .+. +.+. ...|+.+|+|.+|++++++|......
T Consensus 75 ~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~d~~------------------- 133 (188)
T PRK04040 75 AEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLRDET------------------- 133 (188)
T ss_pred HHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhcccc-------------------
Confidence 3333334588998643221111 111 1221 25789999999999999888774200
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-C--CcEEEEcCCCChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-K--GIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~--~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
-.|+.++.+.++.+++..... ..+|.. . ..++.+|.+..+++.++++.++|.
T Consensus 134 ---------R~R~~es~e~I~~~~~~a~~~----a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 134 ---------RRRDVETEEDIEEHQEMNRAA----AMAYAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred ---------cCCCCCCHHHHHHHHHHHHHH----HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 013445566676666543332 122332 1 234455555459999999988763
No 60
>PRK07933 thymidylate kinase; Validated
Probab=99.52 E-value=7.9e-13 Score=107.69 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=95.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHH-cCCchHHHHHHHHHcCC--C-cCHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGE--L-VSDDLVVGII 105 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~--~-~~~~~~~~ll 105 (251)
|.|+|+ |+.||||||+++.|++++ |..++-+.. .. .+++.|..+++.+.... . .......-+.
T Consensus 1 ~~IviE-----G~dGsGKST~~~~L~~~L~~~g~~v~~~~~-----P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf 70 (213)
T PRK07933 1 MLIAIE-----GVDGAGKRTLTEALRAALEARGRSVATLAF-----PRYGRSVHADLAAEALHGRHGDLADSVYAMATLF 70 (213)
T ss_pred CEEEEE-----cCCCCCHHHHHHHHHHHHHHCCCeEEEEec-----CCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHH
Confidence 467888 999999999999999998 333332211 10 23456666776665321 1 1111111000
Q ss_pred -HHH------Hc-CCCCCCceEEeCCCCCHH--HH-----------HHHHHHHHh---cCCCcCEEEEEecCHHHHHHHH
Q 025529 106 -DEA------MK-KPSCQKGFILDGFPRTEV--QA-----------QKLDEMLEK---QGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 106 -~~~------l~-~~~~~~~~Iidg~~~~~~--~~-----------~~l~~~~~~---~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
..+ +. ....+..+|.|+|..+-. |. ..+...+.. ....||++|||++|+++..+|+
T Consensus 71 ~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri 150 (213)
T PRK07933 71 ALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERA 150 (213)
T ss_pred hhhhhhhHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHH
Confidence 011 11 112234577888765432 11 111111211 1237999999999999999999
Q ss_pred hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241 (251)
Q Consensus 162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev 241 (251)
..|.... .+.. ..+.+...+.+++-.+.|.+... .+ ....++.||++.++++|
T Consensus 151 ~~R~~~~-~~~~---------------------~d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~ida~~~~e~v 203 (213)
T PRK07933 151 RRRAAQD-ADRA---------------------RDAYERDDGLQQRTGAVYAELAA----QG-WGGPWLVVDPDVDPAAL 203 (213)
T ss_pred Hhhcccc-CCcc---------------------cccccccHHHHHHHHHHHHHHHH----hc-CCCCeEEeCCCCCHHHH
Confidence 9874210 0000 00011111222222233322221 10 12378899999999999
Q ss_pred HHHHHHHh
Q 025529 242 TSEVQKAL 249 (251)
Q Consensus 242 ~~~i~~~l 249 (251)
.++|.+.|
T Consensus 204 ~~~i~~~~ 211 (213)
T PRK07933 204 AARLAAAL 211 (213)
T ss_pred HHHHHHHh
Confidence 99999876
No 61
>PRK13946 shikimate kinase; Provisional
Probab=99.52 E-value=6.1e-13 Score=106.04 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
++.++.|+++ |++||||||+++.|++++|+++++.|.++.... +......+.. .|.......-.+++...
T Consensus 7 ~~~~~~I~l~-----G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l 76 (184)
T PRK13946 7 ALGKRTVVLV-----GLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARL 76 (184)
T ss_pred ccCCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHH
Confidence 3456789999 999999999999999999999999998766542 2222111111 11111111122333332
Q ss_pred HcCCCCCCceEEeCCC--CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 109 MKKPSCQKGFILDGFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~--~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+.. ...+|..|.. ........+. . ..++|||++|.+++.+|+..|.
T Consensus 77 ~~~---~~~Vi~~ggg~~~~~~~r~~l~----~----~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 77 LKG---GPLVLATGGGAFMNEETRAAIA----E----KGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred Hhc---CCeEEECCCCCcCCHHHHHHHH----c----CCEEEEEECCHHHHHHHhcCCC
Confidence 221 1234444432 2222222221 1 2578999999999999998774
No 62
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.51 E-value=2e-13 Score=108.29 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=77.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-----CcCH---------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-----LVSD--------------- 98 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-----~~~~--------------- 98 (251)
||+|+|++||||||+++.|++ +|++++++|.+.++...++...+..+.+.+..+. .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 467779999999999999999 8999999999999988888777777777764322 1211
Q ss_pred ---HHHHHHHHHHH----cCCCCCCceE-EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 99 ---DLVVGIIDEAM----KKPSCQKGFI-LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 99 ---~~~~~ll~~~l----~~~~~~~~~I-idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
++++..+...+ ..... ..++ ++ .|...... +. ..+|.+|++++|.++.++|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~-~~~vive-~plL~e~~--~~-------~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARK-EKVVVLD-IPLLFETG--LE-------KLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCEEEEE-ehHhhcCC--cH-------HhCCeEEEEECCHHHHHHHHHHcC
Confidence 22222222222 11111 2344 44 34332211 11 346899999999999999999873
No 63
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.51 E-value=2.9e-13 Score=108.69 Aligned_cols=162 Identities=10% Similarity=0.124 Sum_probs=102.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCH---------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSD--------------- 98 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~--------------- 98 (251)
+|+|+|++||||||+++.|++ +|+.+++.|.+.+..+.++.+....+.+.+... +.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 367779999999999999976 799999999999998888777666666554321 22221
Q ss_pred ---HHHHHHHHH----HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCC
Q 025529 99 ---DLVVGIIDE----AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 171 (251)
Q Consensus 99 ---~~~~~ll~~----~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~ 171 (251)
.+++..+.. .+..... ..+++-..|...+... ...+|.+|++++|.++..+|+..|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~-~~~vi~e~pLL~E~~~---------~~~~D~vi~V~a~~e~r~~RL~~R~------ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAE-GKLVIWEVPLLFETDA---------YTLCDATVTVDSDPEESILRTISRD------ 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc-CCcEEEEeeeeeEcCc---------hhhCCEEEEEECCHHHHHHHHHHcC------
Confidence 122222222 1111111 2344333444332110 1346999999999999999999883
Q ss_pred ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+|+.... +..+..... . +.|+++.+++++..+|.+.++
T Consensus 144 ---------------------------g~s~e~a~~ri~~Q~----~~~~k~~~a-D-~vI~N~~~~~~l~~~v~~l~~ 189 (196)
T PRK14732 144 ---------------------------GMKKEDVLARIASQL----PITEKLKRA-D-YIVRNDGNREGLKEECKILYS 189 (196)
T ss_pred ---------------------------CCCHHHHHHHHHHcC----CHHHHHHhC-C-EEEECCCCHHHHHHHHHHHHH
Confidence 345678888886521 222222222 2 356777899999999887653
No 64
>PRK04182 cytidylate kinase; Provisional
Probab=99.50 E-value=1.8e-12 Score=102.58 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=66.8
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceE
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI 119 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~I 119 (251)
|+|+|++||||||+++.|++++|+++++++++++............+.+.......+ ...+...+.. +. ....++|
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~V 78 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEI-DKEIDRRQLE-IA--EKEDNVV 78 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchH-HHHHHHHHHH-HH--hcCCCEE
Confidence 444499999999999999999999999999888775543221111222211111111 1122222211 11 0235688
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
++|..... .+. ..++++|+|++|.+++.+|+..|.
T Consensus 79 i~g~~~~~--------~~~---~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 79 LEGRLAGW--------MAK---DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred EEEeecce--------Eec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence 88742111 000 126789999999999999998873
No 65
>PLN02199 shikimate kinase
Probab=99.49 E-value=2.5e-12 Score=107.82 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEA 108 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~ 108 (251)
.++.+|+++ |++||||||+++.|++.+|++++++|.++++... |..+.+++.. |.....+.-.+++.+.
T Consensus 100 l~~~~I~LI-----G~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L 169 (303)
T PLN02199 100 LNGRSMYLV-----GMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKL 169 (303)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 457789999 9999999999999999999999999999988533 2334444442 3222222233333332
Q ss_pred HcCCCCCCceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529 109 MKKPSCQKGFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 163 (251)
Q Consensus 109 l~~~~~~~~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~ 163 (251)
. ...+.|| .|... ......+. .+. . ..+|||++|.+++.+|+..
T Consensus 170 ~----~~~~~VIStGGG~-V~~~~n~~-~L~-~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 170 S----SRYQVVVSTGGGA-VIRPINWK-YMH-K----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred H----hcCCEEEECCCcc-cCCHHHHH-HHh-C----CeEEEEECCHHHHHHHHhh
Confidence 2 1223444 33321 21222222 221 1 4699999999999999985
No 66
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.48 E-value=1.6e-12 Score=119.43 Aligned_cols=118 Identities=15% Similarity=0.239 Sum_probs=78.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDE 107 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~ 107 (251)
|.+..+|+++ |+|||||||+++.||+.+|++++++|.++.+. .|..+.+++.. |.....+.-.+.+.+
T Consensus 3 ~~~~~~i~Li-----G~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~ 71 (542)
T PRK14021 3 PTRRPQAVII-----GMMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVAD 71 (542)
T ss_pred CCCCccEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999 99999999999999999999999999988773 45566666643 333323333344433
Q ss_pred HHcCCCCCCceEEeC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 108 AMKKPSCQKGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 108 ~l~~~~~~~~~Iidg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
.+.. ...+|-.| .+........|.+++.+. ..+|||++|.+++.+|+..+
T Consensus 72 ~~~~---~~~VIs~GGG~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 72 MLED---FDGIFSLGGGAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred HHhc---CCeEEECCCchhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCC
Confidence 3221 12344233 233334444444444333 37999999999999998754
No 67
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.48 E-value=1.7e-13 Score=108.38 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=75.4
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH--------------
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD-------------- 99 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~-------------- 99 (251)
+|+|+|+.||||||+++.|++ +|++++++|.+.++.+.++++....+.+.+... +.+...
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~ 80 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK 80 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence 567779999999999999999 999999999999998888888777777766533 222221
Q ss_pred ----HHHHHH----HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 100 ----LVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 100 ----~~~~ll----~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+++.++ ...+........+++| .|...+. . ....+|.+|++.+|.++..+|+..|.
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~-------~~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--G-------LEKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T-------GGGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--h-------HhhhhceEEEEECCHHHHHHHHHhhC
Confidence 222222 2222222222334455 3432221 1 11457999999999999999999884
No 68
>PRK08118 topology modulation protein; Reviewed
Probab=99.48 E-value=2.9e-13 Score=106.16 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=71.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
++|+|+ |+|||||||+|+.|++.+++++++.|.++... ....++++.+..++.+.+.
T Consensus 2 ~rI~I~-----G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~-- 58 (167)
T PRK08118 2 KKIILI-----GSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK-- 58 (167)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc--
Confidence 468888 99999999999999999999999999876430 0112334444455544443
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
..+||+||.+..... . .+ ..+|.+|+|++|.+.+..|+..|..
T Consensus 59 --~~~wVidG~~~~~~~-~----~l----~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 59 --EDEWIIDGNYGGTMD-I----RL----NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred --CCCEEEeCCcchHHH-H----HH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 247999996443221 1 11 2479999999999999999988853
No 69
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=7.5e-13 Score=98.85 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=94.8
Q ss_pred CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHH---HHHHHHHHHcC-CCCCCceE
Q 025529 44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL---VVGIIDEAMKK-PSCQKGFI 119 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~ll~~~l~~-~~~~~~~I 119 (251)
|..||||||+++.|++++|..+++.|++... ..+ +.+..|.++.|+- +.+.+...+.. ...++..|
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~---------aNi-~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~v 71 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPP---------ANI-EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVV 71 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCH---------HHH-HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceE
Confidence 9999999999999999999999999987432 122 3456677766642 23333333333 33344445
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529 120 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 199 (251)
Q Consensus 120 idg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~ 199 (251)
+-+-. ...+++ ..+...... -.+|||+.+.+++.+|+..|..|.+ |+
T Consensus 72 i~CSA-LKr~YR---D~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM----------~~------------------ 118 (161)
T COG3265 72 IACSA-LKRSYR---DLLREANPG-LRFVYLDGDFDLILERMKARKGHFM----------PA------------------ 118 (161)
T ss_pred EecHH-HHHHHH---HHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCC----------CH------------------
Confidence 54322 222332 222222112 4689999999999999999975532 21
Q ss_pred CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 200 DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 200 ~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.-++. ++..++..-. ...++.||.+.+++++.+.+.+.|.
T Consensus 119 ---~ll~S-------Qfa~LE~P~~-de~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 119 ---SLLDS-------QFATLEEPGA-DEDVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred ---HHHHH-------HHHHhcCCCC-CCCEEEeeCCCCHHHHHHHHHHHHh
Confidence 11111 1222222221 2268899999999999999988775
No 70
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=8.4e-13 Score=99.16 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=103.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH----HHHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD----LVVGIIDEAM 109 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~~~ll~~~l 109 (251)
.|+++ |+.||||||+++.|++++++++++.|++... .-.+.+.+|.+++|+ |+..+-....
T Consensus 14 ~i~vm-----GvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~ 78 (191)
T KOG3354|consen 14 VIVVM-----GVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELR 78 (191)
T ss_pred eEEEE-----ecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHH
Confidence 58888 9999999999999999999999999987432 223456667776653 4444443333
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVP 184 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~-----~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~ 184 (251)
......+++|+-+-.......+.|.+-+.. ..-..-.+|+|.++.|++.+|+..|..|.+ |+
T Consensus 79 ~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM----------p~--- 145 (191)
T KOG3354|consen 79 KALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM----------PA--- 145 (191)
T ss_pred HHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC----------CH---
Confidence 344455788886543333444444442220 111123688999999999999999975532 21
Q ss_pred CCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHh
Q 025529 185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKAL 249 (251)
Q Consensus 185 ~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l 249 (251)
+-++..+.. ++.--.+...++.|+.. .++|++++.|.+.+
T Consensus 146 ------------------~lleSQf~~-------LE~p~~~e~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 146 ------------------DLLESQFAT-------LEAPDADEEDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred ------------------HHHHHHHHh-------ccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence 122222111 11001122367888887 99999999988765
No 71
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.45 E-value=2.9e-12 Score=104.92 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=88.4
Q ss_pred cccCCCCCChhHHHHHHHHHhCCceechhHH--HHHHHHcCCchHH------HHHHHHHcCC---CcCHHHHHHHHHHHH
Q 025529 41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDM--LRAAVAAKTPLGI------KAKEAMDKGE---LVSDDLVVGIIDEAM 109 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~l--i~~~~~~~~~~~~------~i~~~l~~~~---~~~~~~~~~ll~~~l 109 (251)
+|.|..||||||+++.|+++++..++..... .....+.++.++. .++....... .........++..+.
T Consensus 3 ~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~R~ 82 (219)
T cd02030 3 TVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSSRL 82 (219)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHHHH
Confidence 3349999999999999999998655433211 0000001111211 1333333221 111111111111111
Q ss_pred c--------CCCCCCceEEeCCCCCHH-H--------------HHHHHHH---HHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529 110 K--------KPSCQKGFILDGFPRTEV-Q--------------AQKLDEM---LEKQGKKVDKVLNFAIDDAVLEERITG 163 (251)
Q Consensus 110 ~--------~~~~~~~~Iidg~~~~~~-~--------------~~~l~~~---~~~~~~~~~~vI~L~~~~e~~~~Rl~~ 163 (251)
. ....+..+|+|+++.+-. . ...+.++ +......||++|||++|++.+.+|+..
T Consensus 83 ~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri~~ 162 (219)
T cd02030 83 LQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRIKK 162 (219)
T ss_pred HHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHH
Confidence 1 122345788998754321 1 1111111 111225799999999999999999998
Q ss_pred CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC--CChhHH
Q 025529 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE--KPPQEV 241 (251)
Q Consensus 164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~--~~~eev 241 (251)
|... ++ .... ..+.+++..++..+. ...|.....++.||++ .+.+++
T Consensus 163 R~~~------~e----------------------~~~~-~~yl~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e~i 211 (219)
T cd02030 163 RGDP------HE----------------------MKVT-SAYLQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTEKV 211 (219)
T ss_pred cCCc------hh----------------------hccc-HHHHHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHHHH
Confidence 7411 00 0111 222233333222221 1113333478899998 888888
Q ss_pred HHHHHH
Q 025529 242 TSEVQK 247 (251)
Q Consensus 242 ~~~i~~ 247 (251)
+++|..
T Consensus 212 ~~~I~~ 217 (219)
T cd02030 212 VEDIEY 217 (219)
T ss_pred HHHHHc
Confidence 887753
No 72
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.44 E-value=9e-13 Score=105.14 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH--------HHHHc-C
Q 025529 44 GPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII--------DEAMK-K 111 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll--------~~~l~-~ 111 (251)
|+.||||||+++.|++++. ..++-. ..+..++.|..+++++............-+. ...+. .
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~~~~~~~~------~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~ 76 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEKGYKVIIT------FPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPA 76 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTEEEEEE------ESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccc------CCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999983 221111 0123467788888888744444332222111 11111 1
Q ss_pred CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC
Q 025529 112 PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 179 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~ 179 (251)
...+..+|.|.|..+ ......+...+ ....||++|+|++++++..+|+..|...
T Consensus 77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~--~~~~PDl~~~Ldv~pe~~~~R~~~r~~~------------ 142 (186)
T PF02223_consen 77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDI--FLPKPDLTFFLDVDPEEALKRIAKRGEK------------ 142 (186)
T ss_dssp HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHH--HTTE-SEEEEEECCHHHHHHHHHHTSST------------
T ss_pred HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHh--cCCCCCEEEEEecCHHHHHHHHHcCCcc------------
Confidence 122345777875222 11111121111 1128999999999999999999998520
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529 180 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245 (251)
Q Consensus 180 ~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i 245 (251)
.+.........+++ ++.+..+.+ ..+.++.||++.+++++.++|
T Consensus 143 ----------------~~~~~~~~~~~~~~---~~~y~~l~~---~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 143 ----------------DDEEEEDLEYLRRV---REAYLELAK---DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ----------------TTTTTHHHHHHHHH---HHHHHHHHH---TTTTEEEEETTS-HHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHH---HHHHHHHHc---CCCCEEEEECCCCHHHHHhhC
Confidence 00111122222222 222222222 356899999999999999886
No 73
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=6.7e-12 Score=101.02 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=97.5
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC----CCcCH-----------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSD----------------- 98 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~----~~~~~----------------- 98 (251)
|+|+|++||||||+++.|++++|+++++.|.+.+..+.+ ......+.+.+..+ +.+..
T Consensus 9 IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~L 87 (204)
T PRK14733 9 IGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWL 87 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHH
Confidence 344499999999999999999999999999998887664 33333343333221 12221
Q ss_pred -HHHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529 99 -DLVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 99 -~~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~ 173 (251)
.+++..+. ..+... ....+++|. |...+....+ ...+|.+|++.||.++.++|+..|.
T Consensus 88 e~i~HP~V~~~~~~~~~~~-~~~~vv~ei-pLL~E~~~~~-------~~~~D~vi~V~a~~e~ri~Rl~~Rd-------- 150 (204)
T PRK14733 88 EDYLHPVINKEIKKQVKES-DTVMTIVDI-PLLGPYNFRH-------YDYLKKVIVIKADLETRIRRLMERD-------- 150 (204)
T ss_pred HhhhhHHHHHHHHHHHHhc-CCCeEEEEe-chhhhccCch-------hhhCCEEEEEECCHHHHHHHHHHcC--------
Confidence 11222222 222211 112234443 4322210000 1247899999999999999999873
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~ 250 (251)
+.+.+.+.+|++.... ..+..... . ++|+.+. +.+++.++|.+.++
T Consensus 151 -------------------------~~s~~~a~~ri~~Q~~----~eek~~~a-D-~VI~N~g~~~~~l~~~~~~~~~ 197 (204)
T PRK14733 151 -------------------------GKNRQQAVAFINLQIS----DKEREKIA-D-FVIDNTELTDQELESKLITTIN 197 (204)
T ss_pred -------------------------CCCHHHHHHHHHhCCC----HHHHHHhC-C-EEEECcCCCHHHHHHHHHHHHH
Confidence 4466788888865322 22222211 2 3577777 99999999988765
No 74
>PRK13976 thymidylate kinase; Provisional
Probab=99.44 E-value=1.4e-11 Score=99.86 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=69.5
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH-H---
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-G--- 103 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-----~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~--- 103 (251)
+.|+|+ |..||||||+++.|++.+.- .++-+ . .+.++.+|+.+++.+.....+...... -
T Consensus 1 ~fIv~E-----GiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-----~-eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a 69 (209)
T PRK13976 1 MFITFE-----GIDGSGKTTQSRLLAEYLSDIYGENNVVLT-----R-EPGGTSFNELVRGLLLSLKNLDKISELLLFIA 69 (209)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCcceEEe-----e-CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHH
Confidence 467888 99999999999999998842 22211 1 123567788888877642222222111 1
Q ss_pred ----HHHHHHc-CCCCCCceEEeCCCCCHHH------------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 104 ----IIDEAMK-KPSCQKGFILDGFPRTEVQ------------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 104 ----ll~~~l~-~~~~~~~~Iidg~~~~~~~------------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
.+...+. .+..+..+|.|.|..+... ...+...+ ....||++|+|++|++++.+|+..+
T Consensus 70 ~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 70 MRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhccc
Confidence 1111111 1122345677887554221 12222221 1347999999999999999998644
No 75
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.43 E-value=6.4e-12 Score=108.02 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHHHhh---ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-c
Q 025529 17 LMTELLRRMK---CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-K 92 (251)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~ 92 (251)
...+.+..+. ..+.+++.|+++ |+|||||||+++.|++++|++++++|..+.+.. |..+.+.+. .
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~-----G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~ 183 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALI-----GLRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALY 183 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHH
Confidence 3444444443 345678889999 999999999999999999999999987765532 222222222 1
Q ss_pred CCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 93 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 93 ~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
|.......-.+.+...+.. ....|+............+..+. ...++|||++|.+++.+|+..|.
T Consensus 184 G~~~fr~~e~~~l~~ll~~---~~~~VI~~Ggg~v~~~~~~~~l~-----~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 184 GQEGYRRLERRALERLIAE---HEEMVLATGGGIVSEPATFDLLL-----SHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred CHHHHHHHHHHHHHHHHhh---CCCEEEECCCchhCCHHHHHHHH-----hCCEEEEEECCHHHHHHHHhcCC
Confidence 2111112222233332221 12345533222222222222221 12479999999999999998763
No 76
>PRK06762 hypothetical protein; Provisional
Probab=99.43 E-value=9.5e-12 Score=97.39 Aligned_cols=159 Identities=12% Similarity=0.099 Sum_probs=91.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+.|+|. |+|||||||+|+.|++++ ++.+++.|.+.+. +..... .........+..+....+
T Consensus 3 ~li~i~-----G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~-l~~~~~----------~~~~~~~~~~~~~~~~~~- 65 (166)
T PRK06762 3 TLIIIR-----GNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-MLRVKD----------GPGNLSIDLIEQLVRYGL- 65 (166)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH-hccccC----------CCCCcCHHHHHHHHHHHH-
Confidence 445555 999999999999999999 5667777665432 211000 000111222222322222
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
.....+|+|+..........+..+....+ .+..+|+|++|.+++.+|...|...
T Consensus 66 --~~g~~vild~~~~~~~~~~~~~~l~~~~~-~~~~~v~Ldap~e~~~~R~~~R~~~----------------------- 119 (166)
T PRK06762 66 --GHCEFVILEGILNSDRYGPMLKELIHLFR-GNAYTYYFDLSFEETLRRHSTRPKS----------------------- 119 (166)
T ss_pred --hCCCEEEEchhhccHhHHHHHHHHHHhcC-CCeEEEEEeCCHHHHHHHHhccccc-----------------------
Confidence 22345788887544444444444443333 3568999999999999999888410
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.....+.++.+++. ...+. .+ ..+.++.+.++++++++|.+.+.
T Consensus 120 -------~~~~~~~l~~~~~~----~~~~~-~~----~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 120 -------HEFGEDDMRRWWNP----HDTLG-VI----GETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred -------ccCCHHHHHHHHhh----cCCcC-CC----CeEEecCCCCHHHHHHHHHHHhc
Confidence 01123444444433 12111 11 23555667899999999988763
No 77
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.42 E-value=4.5e-12 Score=98.53 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-CCcCHHHHHHHHHHHHcCCCCCCceEEeCC-
Q 025529 46 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLVVGIIDEAMKKPSCQKGFILDGF- 123 (251)
Q Consensus 46 ~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~- 123 (251)
|||||||+++.||+.++++++++|.++.+. .|..+.+++... .........+++.+.+... ..+|..|.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence 799999999999999999999999998763 344555554422 1111222334444433332 33443332
Q ss_pred -CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 124 -PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 124 -~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+........|. ....+|||+++.+.+.+|+..+.
T Consensus 72 ~~~~~~~~~~L~--------~~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 72 IVLKEENRELLK--------ENGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp GGGSHHHHHHHH--------HHSEEEEEE--HHHHHHHHHHHC
T ss_pred CcCcHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCC
Confidence 23333333333 12579999999999999998764
No 78
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.41 E-value=1.7e-12 Score=98.94 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=74.4
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc---hHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 116 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~ 116 (251)
|+++|+|||||||+++.|++.++..+++.|.+.........+ ......... ...+...+...+. .+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~---~g~ 71 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR---NGN 71 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH---TT-
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH---cCC
Confidence 445599999999999999999999999998876543321111 001111100 1122233333332 234
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+|+|...........+..++...+. +..+|+|+++.+++.+|+..|.
T Consensus 72 ~~vvd~~~~~~~~r~~~~~~~~~~~~-~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 72 SVVVDNTNLSREERARLRELARKHGY-PVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp EEEEESS--SHHHHHHHHHHHHHCTE-EEEEEEECHHHHHHHHHHHTTH
T ss_pred CceeccCcCCHHHHHHHHHHHHHcCC-eEEEEEEECCHHHHHHHHHhcC
Confidence 68899776677777777777766654 3578899999999999999986
No 79
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.40 E-value=1.2e-11 Score=96.42 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=85.0
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechhHHHHHH----HHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCc
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA----VAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 117 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~ 117 (251)
|.|++||||||+++.|+..++..+++.|++.... ...+...... -...+...+.............
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~ 72 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDD----------DRWPWLQNLNDASTAAAAKNKV 72 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChh----------hHHHHHHHHHHHHHHHHhcCCC
Confidence 4499999999999999999999999998863221 1111000000 0012222222111111111223
Q ss_pred eEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccC
Q 025529 118 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR 197 (251)
Q Consensus 118 ~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r 197 (251)
.|++...........+ ...+. ...+|+|++|.+++.+|+..|..+
T Consensus 73 ~Vi~~t~~~~~~r~~~----~~~~~-~~~~i~l~~~~e~~~~R~~~R~~~------------------------------ 117 (163)
T TIGR01313 73 GIITCSALKRHYRDIL----REAEP-NLHFIYLSGDKDVILERMKARKGH------------------------------ 117 (163)
T ss_pred EEEEecccHHHHHHHH----HhcCC-CEEEEEEeCCHHHHHHHHHhccCC------------------------------
Confidence 3554433222222222 22322 234689999999999999988411
Q ss_pred CCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 198 KDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 198 ~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
....+.++.++..+.. + ......++.||++.+++++.++|.+.|
T Consensus 118 -~~~~~~i~~~~~~~~~---~----~~~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 118 -FMKADMLESQFAALEE---P----LADETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred -CCCHHHHHHHHHHhCC---C----CCCCCceEEEECCCCHHHHHHHHHHHH
Confidence 0112334444333211 0 011125789999999999999998876
No 80
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.40 E-value=5.6e-12 Score=111.64 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=98.5
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------- 99 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------- 99 (251)
|+|+|++||||||+++.|++ +|++++++|.+.++.+.+++.....+.+.+..+ +.+...
T Consensus 4 IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~ 82 (395)
T PRK03333 4 IGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAV 82 (395)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHH
Confidence 55669999999999999988 899999999999998887765555555444322 222211
Q ss_pred ---HHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529 100 ---LVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 172 (251)
Q Consensus 100 ---~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~ 172 (251)
+++..+. +.+... ....+++.+.|...+.. + ...+|.+|++++|.+++.+|+..|+
T Consensus 83 le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~--~-------~~~~D~iI~V~ap~e~ri~Rl~~rR------- 145 (395)
T PRK03333 83 LNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG--M-------APLFHLVVVVDADVEVRVRRLVEQR------- 145 (395)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC--c-------hhhCCEEEEEECCHHHHHHHHHhcC-------
Confidence 1122222 122122 22346665555433211 1 1346899999999999999998753
Q ss_pred eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.+.+....++..... ..+... . . -+.|+++.+.+++...|.+.++
T Consensus 146 --------------------------g~s~~~a~~ri~~Q~~-~e~k~~-~---A-D~vIdN~~s~e~l~~~v~~~l~ 191 (395)
T PRK03333 146 --------------------------GMAEADARARIAAQAS-DEQRRA-V---A-DVWLDNSGTPDELVEAVRALWA 191 (395)
T ss_pred --------------------------CCCHHHHHHHHHhcCC-hHHHHH-h---C-CEEEECCCCHHHHHHHHHHHHH
Confidence 2233444555533211 111111 1 1 2457888899999988887654
No 81
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.37 E-value=1.2e-11 Score=98.25 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=26.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
.|.|++. |+.|+||||+++.|+++++..++
T Consensus 4 ~~~IvI~-----G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIE-----GMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEe-----cccccCHHHHHHHHHHHhCCcee
Confidence 5677888 99999999999999999997655
No 82
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.36 E-value=2e-11 Score=101.88 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=65.0
Q ss_pred ecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 114 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~ 114 (251)
|+|+|+|||||||+|+.|++.++ +.+++.|. ++........ .....+ .......+...+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~-lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~--- 67 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL-IRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN--- 67 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH-HHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC---
Confidence 45559999999999999999873 34555543 4443221111 111111 11222334333322
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
+..+|+|+..........+.......+ .+..+||+++|.+++.+|...|
T Consensus 68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~-~~~~~I~l~~p~e~~~~Rn~~R 116 (249)
T TIGR03574 68 KYSVIVDDTNYYNSMRRDLINIAKEYN-KNYIIIYLKAPLDTLLRRNIER 116 (249)
T ss_pred CCeEEEeccchHHHHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHHhC
Confidence 235888987544444444554444444 3567899999999999998876
No 83
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.34 E-value=8e-11 Score=94.41 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=62.4
Q ss_pred cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHH-------HHHHHHHHHcCCC
Q 025529 41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL-------VVGIIDEAMKKPS 113 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~-------~~~ll~~~l~~~~ 113 (251)
+|.|++||||||+++.|++++++.++.-..- ......+ .++..+.+........ ..+.+........
T Consensus 3 ~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~---~~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~ 76 (193)
T cd01673 3 VVEGNIGAGKSTLAKELAEHLGYEVVPEPVE---PDVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLS 76 (193)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcccccccc---ccCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3449999999999999999888755432210 0000011 1112221100000000 1111222222222
Q ss_pred CCCceEEeCCCCCHH---------------HHHHHHHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 114 CQKGFILDGFPRTEV---------------QAQKLDEML---EKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 114 ~~~~~Iidg~~~~~~---------------~~~~l~~~~---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
....+|+|+++.+-. ....+..++ ......|+++|||+++++++.+|+..|.
T Consensus 77 ~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 77 TGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred cCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 345788998876421 111111222 1223579999999999999999998874
No 84
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.32 E-value=4.2e-11 Score=92.33 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=63.8
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 114 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~ 114 (251)
|+++ |+|||||||+++.|++.+|+++++.+.++...... ........ .+ ...+...-...+.....
T Consensus 2 i~l~-----G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~ 67 (154)
T cd00464 2 IVLI-----GMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLT 67 (154)
T ss_pred EEEE-----cCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhc
Confidence 5556 99999999999999999999999999887664321 11111111 11 12222211111111112
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..++|+++.......... .+.+ .....+|||++|.+.+.+|+..|.
T Consensus 68 ~~~~vi~~g~~~i~~~~~-~~~~----~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 68 KENAVIATGGGAVLREEN-RRLL----LENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cCCcEEECCCCccCcHHH-HHHH----HcCCeEEEEeCCHHHHHHHhccCC
Confidence 234555432221111111 1122 123579999999999999998763
No 85
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.32 E-value=4.8e-12 Score=96.73 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=62.4
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCce
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 118 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~ 118 (251)
||+|+|+|||||||+|+.|++++|+++++.+.+...... ....... . ...+...+...+........|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~~~-~-----~~~i~~~l~~~~~~~~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASEVA-A-----IPEVRKALDERQRELAKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHHhc-c-----cHhHHHHHHHHHHHHhhCCCE
Confidence 456669999999999999999999999999843222111 1000000 0 001111222222222223469
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 119 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 119 Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
|+||....... ....+++|+|++|++...+|+..|
T Consensus 69 Vidg~~~~~~~-----------~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 69 VLEGRDIGTVV-----------FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEEeeeeeeEE-----------cCCCCEEEEEECCHHHHHHHHHHH
Confidence 99986431110 023689999999999999999885
No 86
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.30 E-value=5.5e-11 Score=94.89 Aligned_cols=159 Identities=13% Similarity=0.148 Sum_probs=87.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC-----CchHHHHHHHHHcCCCcCHHHHH------
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK-----TPLGIKAKEAMDKGELVSDDLVV------ 102 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~------ 102 (251)
.++|+ ||+||||||+++.|+..++..++..+..+....... .-.+.........+... ..+..
T Consensus 4 ~i~l~-----G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg 77 (186)
T PRK10078 4 LIWLM-----GPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYG 77 (186)
T ss_pred EEEEE-----CCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccC
Confidence 56667 999999999999999988765554443222110000 01112222222222211 01000
Q ss_pred --HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCC
Q 025529 103 --GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAP 180 (251)
Q Consensus 103 --~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~ 180 (251)
.-+...+. ....+|++|. ......+.. .. ..+..+|+|++|.+++.+|+..|.
T Consensus 78 ~~~~~~~~l~---~g~~VI~~G~---~~~~~~~~~---~~-~~~~~vi~l~~s~e~l~~RL~~R~--------------- 132 (186)
T PRK10078 78 VGIEIDLWLH---AGFDVLVNGS---RAHLPQARA---RY-QSALLPVCLQVSPEILRQRLENRG--------------- 132 (186)
T ss_pred CcHHHHHHHh---CCCEEEEeCh---HHHHHHHHH---Hc-CCCEEEEEEeCCHHHHHHHHHHhC---------------
Confidence 01222222 2345777765 111111222 22 234578899999999999998763
Q ss_pred CCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 181 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 181 p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.+.+.+|+..+. +|. ...++.||++.++++++++|.+.|.
T Consensus 133 ------------------~~~~~~i~~rl~r~~--------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 133 ------------------RENASEINARLARAA--------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLH 175 (186)
T ss_pred ------------------CCCHHHHHHHHHHhh--------hhc-cCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 223456777775421 122 2245678888899999999998874
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.29 E-value=5.6e-11 Score=91.40 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=68.0
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcC----HHHHHHHHHHHHcCC-C
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKP-S 113 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ll~~~l~~~-~ 113 (251)
||+|+|+|||||||+|+.|++.++..+++.|.+...... ..+..+...+ ..++..+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 456669999999999999999999999999877543110 0011111111 111222211111111 2
Q ss_pred CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
....+|+|...........+..+. .+ .+..+|+|++|.+++.+|+..|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~--~~-~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGA--AN-PRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcC--CC-CCEEEEEEECCHHHHHHHHHhcc
Confidence 344688886544444444444332 22 34568999999999999999884
No 88
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=4.4e-10 Score=89.56 Aligned_cols=38 Identities=37% Similarity=0.547 Sum_probs=33.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+.|+|- ||.||||||+|+.||++||+.+++++.+.|..
T Consensus 5 ~~IAID-----GPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAID-----GPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEe-----CCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 455555 99999999999999999999999999888764
No 89
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.25 E-value=1.3e-10 Score=105.48 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=65.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~ 111 (251)
|+|+++ |+|||||||+++.|++++|++++++|.++.+. .|..+.+++.. |.......-.+.+.+...
T Consensus 1 m~I~l~-----G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~- 68 (488)
T PRK13951 1 MRIFLV-----GMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE- 68 (488)
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh-
Confidence 467788 99999999999999999999999999988662 22233333332 211112222222322211
Q ss_pred CCCCCceEE-eCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 112 PSCQKGFIL-DGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 112 ~~~~~~~Ii-dg~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
....|+ .|. +........+ . ...+|||++|.+++.+|+..+
T Consensus 69 ---~~~~Vis~Gggvv~~~~~r~~l----~-----~~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 69 ---RDNVVVATGGGVVIDPENRELL----K-----KEKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred ---cCCEEEECCCccccChHHHHHH----h-----cCeEEEEECCHHHHHHHhccC
Confidence 123343 332 1222222222 1 135899999999999999754
No 90
>PRK07261 topology modulation protein; Provisional
Probab=99.23 E-value=3.6e-11 Score=94.63 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=70.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+++.|++.+++++++.|.+... ++ ....+.+.+...+...+..
T Consensus 1 ~ri~i~-----G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~- 58 (171)
T PRK07261 1 MKIAII-----GYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---PN-------------WQERDDDDMIADISNFLLK- 58 (171)
T ss_pred CEEEEE-----cCCCCCHHHHHHHHHHHhCCCeEecCCEEec---cc-------------cccCCHHHHHHHHHHHHhC-
Confidence 468888 9999999999999999999999998875321 00 0112233344444444422
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
..||+||..........+. ..|.+|+|++|.+.+..|+..|..
T Consensus 59 ---~~wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 59 ---HDWIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred ---CCEEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3499999876533333222 358999999999999999988853
No 91
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.23 E-value=6.2e-10 Score=89.42 Aligned_cols=176 Identities=15% Similarity=0.188 Sum_probs=94.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchH-HHHHHHHHc----CCCcCHHHHH----
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMDK----GELVSDDLVV---- 102 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~----~~~~~~~~~~---- 102 (251)
++.|++. |+|||||||+|+.|++++|+.++..+|++++.+.+....+ ...++.... +....+..+.
T Consensus 3 ~~~i~i~-----G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 3 STIHFIG-----GIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 4556666 9999999999999999999999999999988877433322 111111111 1111111111
Q ss_pred ------HHHHHHHc-CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec-CHHHHHHHHhcCcCCCCCCcee
Q 025529 103 ------GIIDEAMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEERITGRWIHPSSGRTY 174 (251)
Q Consensus 103 ------~ll~~~l~-~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~-~~e~~~~Rl~~r~~~~~~~~~~ 174 (251)
.-+...+. ....+..+|+|+............ . .. ..++++.+ ++++..+|+..|..+.
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~----~--~~-v~~i~l~v~d~e~lr~Rl~~R~~~~------ 144 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR----T--NN-IRAFYLYIRDAELHRSRLADRINYT------ 144 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH----h--cC-eEEEEEEeCCHHHHHHHHHHHhhcc------
Confidence 11111111 112345789998655544432111 1 11 24566665 5677889999885221
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 175 HTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++ ..+.+.+.+..++....-+.+..++. .+-.|++ .+.++.++.+.+.+.
T Consensus 145 -----------------------~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~-~i~~i~~-~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 145 -----------------------HKNSPGKRLAEHLPEYRTIMDYSIADARGY-NIKVIDT-DNYREARNPLLDPIS 196 (197)
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecC-ccHHHHHHHHHHHhc
Confidence 111 12223333333333333344433332 2334454 688999988887664
No 92
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.22 E-value=5.1e-11 Score=94.94 Aligned_cols=163 Identities=21% Similarity=0.229 Sum_probs=96.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh--CCc--eechhHHHHHHHHcCCchH----HHHHHHHHcCCCcCHHHH---
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLC--HLATGDMLRAAVAAKTPLG----IKAKEAMDKGELVSDDLV--- 101 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~--~i~~~~li~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~--- 101 (251)
+.++++ ||+||||+|+++.|.+.+ ++. +..+....+.....+.++. ..+.+.+..|..++....
T Consensus 3 r~ivl~-----Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~ 77 (184)
T smart00072 3 RPIVLS-----GPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGN 77 (184)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCc
Confidence 457777 999999999999999986 222 2222111111111111221 556666666655443222
Q ss_pred -----HHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe-cCHHHHHHHHhcCcCCCCCCceec
Q 025529 102 -----VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA-IDDAVLEERITGRWIHPSSGRTYH 175 (251)
Q Consensus 102 -----~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~-~~~e~~~~Rl~~r~~~~~~~~~~~ 175 (251)
...+...+. .++.+|+|..|....+.... ...| ++||+. .+.+.+.+|+..|.
T Consensus 78 ~YGt~~~~i~~~~~---~~~~~ild~~~~~~~~l~~~-------~~~~-~vIfi~~~s~~~l~~rl~~R~---------- 136 (184)
T smart00072 78 YYGTSKETIRQVAE---QGKHCLLDIDPQGVKQLRKA-------QLYP-IVIFIAPPSSEELERRLRGRG---------- 136 (184)
T ss_pred CcccCHHHHHHHHH---cCCeEEEEECHHHHHHHHHh-------CCCc-EEEEEeCcCHHHHHHHHHhcC----------
Confidence 223333332 24678999887666555431 1233 688887 55677999998773
Q ss_pred ccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 176 TKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 176 ~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
+++.+.+.+|+......... ..+| .+ .|.++ +.++.++++.++|++
T Consensus 137 -----------------------~~~~~~i~~rl~~a~~~~~~-~~~f----d~-~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 137 -----------------------TETAERIQKRLAAAQKEAQE-YHLF----DY-VIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHhh-hccC----CE-EEECc-CHHHHHHHHHHHHHh
Confidence 55678888998875443321 1222 12 34443 799999999988863
No 93
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.21 E-value=4.3e-10 Score=87.08 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=111.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH--
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE-- 107 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~-- 107 (251)
.++..|++. |..+|||||++..|.+.+. +... ...+.++....+..|+.+..++.+...+++.+++-+...
T Consensus 3 ~rg~liV~e-----GlDrsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnR 75 (208)
T KOG3327|consen 3 IRGALIVLE-----GLDRSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANR 75 (208)
T ss_pred CCccEEeee-----ccccCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccch
Confidence 467789999 9999999999999999882 2222 233345566678899999999999988888776543311
Q ss_pred ------HHcCCCCCCceEEeCCCCCHHH---HHHHHHHH-H---hcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529 108 ------AMKKPSCQKGFILDGFPRTEVQ---AQKLDEML-E---KQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 174 (251)
Q Consensus 108 ------~l~~~~~~~~~Iidg~~~~~~~---~~~l~~~~-~---~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~ 174 (251)
.......+..+|+|.|-.+=.. +..+...+ . ....+||+++||++|++.+.+| .+.+.
T Consensus 76 we~~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~-------- 146 (208)
T KOG3327|consen 76 WEHVSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE-------- 146 (208)
T ss_pred hhHHHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch--------
Confidence 1111222345788987544221 12122111 1 1236899999999999995544 33320
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh-hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS-KKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~-~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.......++++...++.... + +...++.+|++.+.|+|.+.|..+++
T Consensus 147 -----------------------Erye~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e 194 (208)
T KOG3327|consen 147 -----------------------ERYETVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVE 194 (208)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHH
Confidence 01223445555544433222 2 23468999999999999999976553
No 94
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.20 E-value=2.1e-11 Score=98.91 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHH---HHHcCCch----HHHHHHHHHcCCCcCHH-
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRA---AVAAKTPL----GIKAKEAMDKGELVSDD- 99 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~---~~~~~~~~----~~~i~~~l~~~~~~~~~- 99 (251)
|..+..|+|+ ||+||||||+++.|.+.. ..+ +......+. .-..+..+ ...+...+.++..+...
T Consensus 10 ~~~~~~ivi~-----GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~ 83 (206)
T PRK14738 10 PAKPLLVVIS-----GPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAE 83 (206)
T ss_pred CCCCeEEEEE-----CcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEE
Confidence 5677888899 999999999999998652 211 111000000 00000000 01222333333322110
Q ss_pred -------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC--HHHHHHHHhcCcCCCCC
Q 025529 100 -------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID--DAVLEERITGRWIHPSS 170 (251)
Q Consensus 100 -------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~--~e~~~~Rl~~r~~~~~~ 170 (251)
+....+...+. .++.+|++.-+ .....+.+ ..|+.++++.+| .+++.+|+..|.
T Consensus 84 ~~g~~YGt~~~~i~~~~~---~g~~vi~~~~~---~g~~~l~~------~~pd~~~if~~pps~e~l~~Rl~~R~----- 146 (206)
T PRK14738 84 VYGNYYGVPKAPVRQALA---SGRDVIVKVDV---QGAASIKR------LVPEAVFIFLAPPSMDELTRRLELRR----- 146 (206)
T ss_pred EcCceecCCHHHHHHHHH---cCCcEEEEcCH---HHHHHHHH------hCCCeEEEEEeCCCHHHHHHHHHHcC-----
Confidence 00112222221 22346776533 22232322 346777767765 558899999874
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+++.+.+.+|+..++....... ...++.||++.++++++++|.+.|.
T Consensus 147 ----------------------------~~~~~~~~~Rl~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 147 ----------------------------TESPEELERRLATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3345688888877654433211 1257889999999999999998874
No 95
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.20 E-value=6.5e-10 Score=87.84 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHH-cC--CCcCHH---HHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMD-KG--ELVSDD---LVVGI 104 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~-~~--~~~~~~---~~~~l 104 (251)
..|++. |+|||||||+++.|++.++.. +++.|++.......... . ...+. ++ ...+.. .....
T Consensus 3 ~~i~l~-----G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~y~~ 73 (175)
T cd00227 3 RIIILN-----GGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-A---EGGIEFDGDGGVSPGPEFRLLEGA 73 (175)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-c---ccccccCccCCcccchHHHHHHHH
Confidence 356666 999999999999999998654 45777664331110000 0 00000 00 001111 11222
Q ss_pred HHHHHc-CCCCCCceEEeCCCCCHHHH-HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 105 IDEAMK-KPSCQKGFILDGFPRTEVQA-QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 105 l~~~l~-~~~~~~~~Iidg~~~~~~~~-~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+...+. ....+..+|+|.......+. ..+..+ . ..+-..|+++||.+++.+|+..|.
T Consensus 74 ~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~-~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 74 WYEAVAAMARAGANVIADDVFLGRAALQDCWRSF---V-GLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHh---c-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 222221 12334578888643322222 222222 1 233478999999999999999874
No 96
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.16 E-value=7.4e-09 Score=81.95 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred CEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh
Q 025529 145 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 224 (251)
Q Consensus 145 ~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~ 224 (251)
..+|+|++|.+++.+|+..|. ..+.+.+.+|+..+.....
T Consensus 112 ~~~i~l~~~~~~~~~Rl~~R~---------------------------------~~~~~~~~~rl~~~~~~~~------- 151 (179)
T TIGR02322 112 LLVVNITASPDVLAQRLAARG---------------------------------RESREEIEERLARSARFAA------- 151 (179)
T ss_pred cEEEEEECCHHHHHHHHHHcC---------------------------------CCCHHHHHHHHHHHhhccc-------
Confidence 478999999999999999773 1124567777654322110
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 225 KKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 225 ~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
....++.++++.+++++.++|.+.+.
T Consensus 152 ~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 152 APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 12346668888999999999998875
No 97
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.16 E-value=9.7e-10 Score=86.89 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=89.5
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGII 105 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~ll 105 (251)
..++++ |++||||||+++.|+..++..+++.+++... ...+... .+....+ ..+....
T Consensus 4 e~i~l~-----G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~~~-~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 4 ESYILM-----GVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDKMS-QGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHHHh-cCCCCCcccchHHHHHHHHHH
Confidence 456777 9999999999999999999888888765221 0111111 1111111 1112222
Q ss_pred HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
...+. ....|+|+..+.+ ......+ ...+ .+-.+|+|++|.+++.+|+..|..+
T Consensus 69 ~~~~~--~~~~g~iv~s~~~-~~~R~~~----r~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~------------------ 122 (176)
T PRK09825 69 YSLYK--KNETGFIVCSSLK-KQYRDIL----RKSS-PNVHFLWLDGDYETILARMQRRAGH------------------ 122 (176)
T ss_pred HHHHh--cCCCEEEEEEecC-HHHHHHH----HhhC-CCEEEEEEeCCHHHHHHHHhcccCC------------------
Confidence 22211 1245777755532 2222222 2222 3457899999999999999998521
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.-+.+.+......+. ..-.....++.||++.+++++.+.+.+.+.
T Consensus 123 -------------~~~~~vl~~Q~~~~e-------~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~ 167 (176)
T PRK09825 123 -------------FMPPDLLQSQFDALE-------RPCADEHDIARIDVNHDIENVTEQCRQAVQ 167 (176)
T ss_pred -------------CCCHHHHHHHHHHcC-------CCCCCcCCeEEEECCCCHHHHHHHHHHHHH
Confidence 113344444333221 111112358999999999888888877654
No 98
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.14 E-value=2.1e-11 Score=90.19 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=30.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDML 72 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li 72 (251)
+|+|+|+|||||||+|+.|+++||++++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 3556699999999999999999999999999954
No 99
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.14 E-value=1.2e-09 Score=88.70 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDML 72 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li 72 (251)
.++..|.|. |++||||||+++.|++.++ +.+++.|++.
T Consensus 4 ~~~~iI~I~-----G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIA-----GGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 467777777 9999999999999999983 4566777654
No 100
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.12 E-value=1.6e-10 Score=94.83 Aligned_cols=38 Identities=39% Similarity=0.586 Sum_probs=33.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+.|.|. |++||||||+++.|+++||+++++.+.++|..
T Consensus 5 ~~i~i~-----g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 5 IVIAID-----GPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 456666 99999999999999999999999999987763
No 101
>PRK06547 hypothetical protein; Provisional
Probab=99.12 E-value=4.5e-10 Score=88.35 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHH-HHHcCCCc--CHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE-AMDKGELV--SDDLVVGII 105 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~-~l~~~~~~--~~~~~~~ll 105 (251)
+.+++.|+|. |++||||||+++.|++.+++++++.|++...... .......+.. .+..|... +.+......
T Consensus 12 ~~~~~~i~i~-----G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~ 85 (172)
T PRK06547 12 GGGMITVLID-----GRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRP 85 (172)
T ss_pred cCCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCC
Confidence 4567788888 9999999999999999999999999987542100 0111111222 22222111 000000000
Q ss_pred HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
. ..........+|++|....... +...+... ...+.|||++|.+++.+|+..|
T Consensus 86 ~-~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~--g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 86 G-DWVSVEPGRRLIIEGVGSLTAA---NVALASLL--GEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred C-CcEEeCCCCeEEEEehhhccHH---HHHHhccC--CCEEEEEEECCHHHHHHHHHhc
Confidence 0 0001112345778886443222 22232211 1238999999999999999988
No 102
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.11 E-value=7.9e-10 Score=86.26 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=96.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc--------hHHHHHHHHHcCCCcCHHHH-
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDDLV- 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~~~~- 101 (251)
+++.|++. ||+|+||||+.+.|-+.. -..++++...|. ..++.. ....+.+.+.++..+....+
T Consensus 3 ~G~l~vls-----gPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~ 75 (191)
T COG0194 3 KGLLIVLS-----GPSGVGKSTLVKALLEDD-KLRFSVSATTRK-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYH 75 (191)
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHhhc-CeEEEEEeccCC-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEc
Confidence 56677777 999999999999999988 445566544433 111111 12466666666655432211
Q ss_pred -------HHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCce
Q 025529 102 -------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 102 -------~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~~~~ 173 (251)
..-+...+. .++.+|+|-- +..+..+.+. ......||+.+| .+++.+|+.+|.
T Consensus 76 gnyYGT~~~~ve~~~~---~G~~vildId---~qGa~qvk~~-----~p~~v~IFi~pPs~eeL~~RL~~Rg-------- 136 (191)
T COG0194 76 GNYYGTSREPVEQALA---EGKDVILDID---VQGALQVKKK-----MPNAVSIFILPPSLEELERRLKGRG-------- 136 (191)
T ss_pred CCcccCcHHHHHHHHh---cCCeEEEEEe---hHHHHHHHHh-----CCCeEEEEEcCCCHHHHHHHHHccC--------
Confidence 122222222 2345666532 2222322221 223345555544 478888888874
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++.+.+.+|+...+.......+ | .++.+| .+.+..++++..++.
T Consensus 137 -------------------------tds~e~I~~Rl~~a~~Ei~~~~~-f----dyvivN--dd~e~a~~~l~~ii~ 181 (191)
T COG0194 137 -------------------------TDSEEVIARRLENAKKEISHADE-F----DYVIVN--DDLEKALEELKSIIL 181 (191)
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHHHHHh-C----CEEEEC--ccHHHHHHHHHHHHH
Confidence 77889999999988877665444 3 455565 577888888877663
No 103
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.07 E-value=9.8e-09 Score=87.05 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=52.3
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-CCCCCceEE
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQKGFIL 120 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~-~~~~~~~Ii 120 (251)
|+|++||||||+++.|.. .|+..++--. ..++..++...... ....-.+++
T Consensus 11 i~G~~GsGKtt~~~~l~~-~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 11 VTGLSGAGKSVALRALED-LGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred EECCCCCcHHHHHHHHHH-cCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCCCeEEEE
Confidence 349999999999999964 5876654311 12222222221111 111224556
Q ss_pred eCCCCCH-HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 121 DGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 121 dg~~~~~-~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
|-..... .........+...+. ...+|||+++.+++.+|+..+
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~g~-~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRERGI-DVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHhhc
Confidence 6542221 122222233334433 236799999999999999754
No 104
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.07 E-value=3.1e-09 Score=82.96 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=82.9
Q ss_pred CCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHHHHHHHHHcCCCCCC
Q 025529 44 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGIIDEAMKKPSCQK 116 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~ll~~~l~~~~~~~ 116 (251)
|++||||||+++.|++.+|..+++.|.+..... +.. ...|....+ ..+......... ....
T Consensus 2 G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 69 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQR--TNKV 69 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHH--cCCc
Confidence 999999999999999999999998875421100 000 000111101 111111111111 1222
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCccc
Q 025529 117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 196 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 196 (251)
.+|+-.+. ..... ..+...+ .+-.+|+|++|.+++.+|+..|..+
T Consensus 70 ~viv~s~~--~~~~r---~~~~~~~-~~~~~v~l~a~~~~l~~Rl~~R~~~----------------------------- 114 (163)
T PRK11545 70 SLIVCSAL--KKHYR---DLLREGN-PNLSFIYLKGDFDVIESRLKARKGH----------------------------- 114 (163)
T ss_pred eEEEEecc--hHHHH---HHHHccC-CCEEEEEEECCHHHHHHHHHhccCC-----------------------------
Confidence 34553332 33222 2222232 3457899999999999999998521
Q ss_pred CCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 197 RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 197 r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
. .+.+.+...+..+. + .-.....++.||++.+++++.+.+...+.
T Consensus 115 -~-a~~~vl~~Q~~~~e----p---~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 115 -F-FKTQMLVTQFETLQ----E---PGADETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred -C-CCHHHHHHHHHHcC----C---CCCCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 13334443332221 1 10111257889999999999999888764
No 105
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.06 E-value=7.8e-09 Score=84.38 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=33.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+.|.|. ||+||||||+++.|++++++.+++.+++.+..
T Consensus 3 ~~i~i~-----G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAID-----GPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 345555 99999999999999999999999999887654
No 106
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=5.8e-09 Score=79.77 Aligned_cols=176 Identities=20% Similarity=0.212 Sum_probs=98.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
.+.+++. |.||+||||+++...+.+ +++.++.++++-+...... .-..++.+. .+|.+....+...+..
T Consensus 4 ~kvvvit-----GVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g--lve~rD~~R---klp~e~Q~~lq~~Aa~ 73 (189)
T COG2019 4 RKVVVIT-----GVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG--LVEHRDEMR---KLPLENQRELQAEAAK 73 (189)
T ss_pred ceEEEEE-----cCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC--CcccHHHHh---cCCHHHHHHHHHHHHH
Confidence 4566777 999999999999999999 8889999998766433211 011222222 3455555554444333
Q ss_pred CCCCCCc-eEEeCCCCCHHHHHH---HH-HHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 111 KPSCQKG-FILDGFPRTEVQAQK---LD-EMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 111 ~~~~~~~-~Iidg~~~~~~~~~~---l~-~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
....... .|+|++........+ |. |++.. .+||.++.|..+++.++.|-.....
T Consensus 74 rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D~~------------------- 132 (189)
T COG2019 74 RIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRDSR------------------- 132 (189)
T ss_pred HHHHhhhceEEeccceecCCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcccc-------------------
Confidence 2221112 778865332222211 12 12221 6899999999999988877543311
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCc-EEEE-cCCCChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGI-VAQL-HAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~-~~~i-d~~~~~eev~~~i~~~l~ 250 (251)
-.|.-++.+.++..++.-+-. ...+....|- +..+ +.+..+|+-.++|...|.
T Consensus 133 ---------r~Rd~es~e~i~eHqe~nR~a---A~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 133 ---------RDRDVESVEEIREHQEMNRAA---AMAYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred ---------cccccccHHHHHHHHHHHHHH---HHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 013344555665544322111 1122222333 3223 445789998888887764
No 107
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=9.8e-09 Score=81.24 Aligned_cols=110 Identities=22% Similarity=0.222 Sum_probs=57.3
Q ss_pred ccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHH-cCCchHHH-HHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529 42 LAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVA-AKTPLGIK-AKEAMDKGELVSDDLVVGIIDEAMKKPSC 114 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~-~~~~~~~~-i~~~l~~~~~~~~~~~~~ll~~~l~~~~~ 114 (251)
++|+|||||||+|+.|++.+ + ..++..|.+ +-... ..-+..+. .++.+ .+-..+++..++.
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~-~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk---- 73 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL-RGILWDESLPILKEVYRESF-------LKSVERLLDSALK---- 73 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccchhhh-hheecccccchHHHHHHHHH-------HHHHHHHHHHHhc----
Confidence 44999999999999999988 2 233333221 11111 11111111 11211 1223345555554
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
+.-+|+|..-.-......|....... ..+-.+||+.+|.+++++|=..|
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~-~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKER-KTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhc-CCceEEEEEccCHHHHHHhhccC
Confidence 33566775322222222222222222 34568999999999999986554
No 108
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.04 E-value=6.3e-09 Score=96.11 Aligned_cols=129 Identities=17% Similarity=0.116 Sum_probs=72.0
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC------ceechhHHHHHHHHcCCchHHHHHHH
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL------CHLATGDMLRAAVAAKTPLGIKAKEA 89 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~------~~i~~~~li~~~~~~~~~~~~~i~~~ 89 (251)
++++.+.+.|.-..+.+..|++. |.|||||||+++.|++.++. .+++.|.+ ++.+.....+...-+.
T Consensus 376 eV~~iL~~~~~~r~~~g~~Ivl~-----Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er~- 448 (568)
T PRK05537 376 EVVAELRRTYPPRHKQGFTVFFT-----GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDRD- 448 (568)
T ss_pred HHHHHHHHHhccccCCCeEEEEE-----CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHHH-
Confidence 44555555555444567778888 99999999999999999985 77777654 5433321111111110
Q ss_pred HHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 90 MDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 90 l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
.+...+....-.....+.++|+|..............++...+ .-.+|+|++|.+++.+|..
T Consensus 449 ---------~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 449 ---------LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred ---------HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhcc
Confidence 1111111111111123446677753222333344444544432 1258999999999999963
No 109
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.03 E-value=1.3e-08 Score=92.42 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=35.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+++.|+|. ||+||||||+++.|+++||+.+++.+.+.|..
T Consensus 283 ~~~ii~i~-----G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAID-----GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 56777777 99999999999999999999999999888763
No 110
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.02 E-value=1.3e-08 Score=96.13 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
.+.+.|++. ||+||||||+++.|+++|++++++++.+.|..
T Consensus 440 ~~~~~i~i~-----g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 440 DRVPVICID-----GPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cCcceEEee-----CCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 346688888 99999999999999999999999999988775
No 111
>PRK06696 uridine kinase; Validated
Probab=99.02 E-value=2.2e-09 Score=88.10 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhhcc-CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCce--echhHHHH
Q 025529 15 VDLMTELLRRMKCA-SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCH--LATGDMLR 73 (251)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~--i~~~~li~ 73 (251)
.++..+++.++... +..+..|.|. |++||||||+|+.|++.+ |.++ +++|++..
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~-----G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAID-----GITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 35677888888653 4456666666 999999999999999999 5444 45777653
No 112
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.02 E-value=1e-08 Score=81.02 Aligned_cols=111 Identities=13% Similarity=0.031 Sum_probs=60.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI 104 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l 104 (251)
.+|..|+|. |++||||||+++.|++++. ..+++.+.+ ++...... ....-+.. .......
T Consensus 5 ~~~~~I~i~-----G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~~-~~~~~~~~--------~~~~~~~ 69 (176)
T PRK05541 5 PNGYVIWIT-----GLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHYG-YDKQSRIE--------MALKRAK 69 (176)
T ss_pred CCCCEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCCC-CCHHHHHH--------HHHHHHH
Confidence 356788888 9999999999999999985 556665543 33222110 00000000 0001111
Q ss_pred HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 105 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
+...+. ..+..+|+|+... ...... ..... ..+.++|||++|++++.+|+.
T Consensus 70 l~~~l~--~~g~~VI~~~~~~-~~~~~~---~~~~~-~~~~~~v~l~~~~e~~~~R~~ 120 (176)
T PRK05541 70 LAKFLA--DQGMIVIVTTISM-FDEIYA---YNRKH-LPNYFEVYLKCDMEELIRRDQ 120 (176)
T ss_pred HHHHHH--hCCCEEEEEeCCc-HHHHHH---HHHhh-cCCeEEEEEeCCHHHHHHhch
Confidence 212221 1234577786532 211111 11111 234578999999999999975
No 113
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.02 E-value=8e-10 Score=86.71 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=62.9
Q ss_pred eecccCCCCCChhHHHHHHHHHhCC--ceechhHHHHHHHHcCC----c---------hHHHHHHHHHcCCCcCHHHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKT----P---------LGIKAKEAMDKGELVSDDLVVG 103 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~--~~i~~~~li~~~~~~~~----~---------~~~~i~~~l~~~~~~~~~~~~~ 103 (251)
||+|.|++.|||||+++.|++.+.- .++++|.+......... . .+... ..+..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~ 70 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLF------------RRLYA 70 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHH------------HHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHH------------HHHHH
Confidence 4556699999999999999999964 57788777654222110 0 00111 11112
Q ss_pred HHHHHHcC-CCCCCceEEeCCCCCHHH-HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 104 IIDEAMKK-PSCQKGFILDGFPRTEVQ-AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 104 ll~~~l~~-~~~~~~~Iidg~~~~~~~-~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+...+.. ...+..+|+|........ .+.+..++. ..+.+.|-+.||.+++.+|-..|.
T Consensus 71 ~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~---~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 71 AMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA---GLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT---TS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC---CCceEEEEEECCHHHHHHHHHhcC
Confidence 22222222 224457899977655443 444445443 345688999999999999988874
No 114
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.00 E-value=2.2e-08 Score=80.95 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=87.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCH----
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSD---- 98 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~---- 98 (251)
++..|+|. ||+||||||+++.|+..++...+......++ ...+. + ....+......+..+..
T Consensus 4 ~g~~i~i~-----G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (205)
T PRK00300 4 RGLLIVLS-----GPSGAGKSTLVKALLERDPNLQLSVSATTRA-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVF 77 (205)
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHhhCccceeccCccccC-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEEC
Confidence 56678888 9999999999999999875322222221111 00000 0 01222233222222110
Q ss_pred -HH---HHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529 99 -DL---VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 174 (251)
Q Consensus 99 -~~---~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~ 174 (251)
.. ....+...+. .+..+|+|.-+.. ...+.. ..+ .+..++++.++.+++.+|+..|.
T Consensus 78 ~~~y~~~~~~i~~~l~---~g~~vi~dl~~~g---~~~l~~---~~~-~~~~I~i~~~s~~~l~~Rl~~R~--------- 138 (205)
T PRK00300 78 GNYYGTPRSPVEEALA---AGKDVLLEIDWQG---ARQVKK---KMP-DAVSIFILPPSLEELERRLRGRG--------- 138 (205)
T ss_pred CccccCcHHHHHHHHH---cCCeEEEeCCHHH---HHHHHH---hCC-CcEEEEEECcCHHHHHHHHHhcC---------
Confidence 00 0111222221 2234566754322 222222 221 23335545677889999999873
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++.+.+++|+..+...... +...+ ++.++ .+++++.+++.++++
T Consensus 139 ------------------------~~~~~~i~~rl~~~~~~~~~----~~~~d-~vi~n--~~~e~~~~~l~~il~ 183 (205)
T PRK00300 139 ------------------------TDSEEVIARRLAKAREEIAH----ASEYD-YVIVN--DDLDTALEELKAIIR 183 (205)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHHh----HHhCC-EEEEC--CCHHHHHHHHHHHHH
Confidence 45677899999887765432 22222 33343 489999999998875
No 115
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.99 E-value=1.6e-08 Score=80.68 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=90.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCc--------hHHHHHHHHHcCCCcCHH---
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD--- 99 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~--------~~~~i~~~l~~~~~~~~~--- 99 (251)
+++.|+|. ||+||||||+++.|.+.+.-.+++.....|. ..++.. --..+.+.+..|..+...
T Consensus 3 ~~~~ivl~-----GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~ 76 (186)
T PRK14737 3 SPKLFIIS-----SVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVH 76 (186)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEEC
Confidence 56778888 9999999999999998873223333332221 011100 013344444444433211
Q ss_pred -----HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCcCCCCCCce
Q 025529 100 -----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 100 -----~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~~~~~~~~~ 173 (251)
+-.+-+...+. .++.+|+|.-+... ..+... . ...-++|++.+| .+.+.+|+..|.
T Consensus 77 g~~YGt~~~~i~~~~~---~g~~~i~d~~~~g~---~~l~~~---~-~~~~~~Ifi~pps~e~l~~RL~~R~-------- 138 (186)
T PRK14737 77 DNYYGTPKAFIEDAFK---EGRSAIMDIDVQGA---KIIKEK---F-PERIVTIFIEPPSEEEWEERLIHRG-------- 138 (186)
T ss_pred CeeecCcHHHHHHHHH---cCCeEEEEcCHHHH---HHHHHh---C-CCCeEEEEEECCCHHHHHHHHHhcC--------
Confidence 11122222221 23457777543333 333221 1 111157888875 688999998773
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.+.+++|+........ ...++ .++ |+.+ ++++..+++.++|.
T Consensus 139 -------------------------~~s~e~i~~Rl~~~~~e~~-~~~~~----D~v-I~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 139 -------------------------TDSEESIEKRIENGIIELD-EANEF----DYK-IIND-DLEDAIADLEAIIC 183 (186)
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHh-hhccC----CEE-EECc-CHHHHHHHHHHHHh
Confidence 4466789999886443221 11112 233 4444 89999999998875
No 116
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.98 E-value=9.4e-10 Score=87.47 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=30.8
Q ss_pred eecccCCCCCChhHHHHHHHHHh-CCceechhHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR 73 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~ 73 (251)
||+|+|++||||||+|+.|++.+ +..+++.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 56778999999999999999999 688999987754
No 117
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.98 E-value=2.7e-09 Score=79.32 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=53.8
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC---CCCCC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK---PSCQK 116 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~---~~~~~ 116 (251)
|+|+|+|||||||+|+.|+++++..+.+ ............-.................++...... .....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRD------IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHH------HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHH------HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 4566999999999999999998221111 11111110000000011112222233322222222111 22345
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEE-EEEecCHHHHHHHHhcCc
Q 025529 117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKV-LNFAIDDAVLEERITGRW 165 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~v-I~L~~~~e~~~~Rl~~r~ 165 (251)
.+|+|+........ ...... |+|+||++++.+|+..|.
T Consensus 75 ~~iid~~~~~~~~~-----------~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 75 NIIIDGILSNLELE-----------RLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp CEEEEESSEEECET-----------TEEEESSEEEE--HHHHHHHHHCTT
T ss_pred cEEEecccchhccc-----------ccceeeEEEEECCHHHHHHHHHhCC
Confidence 68888875432111 112223 999999999999999985
No 118
>PRK12338 hypothetical protein; Provisional
Probab=98.97 E-value=2e-08 Score=85.77 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=35.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 78 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~ 78 (251)
+|..|++. |+|||||||+|+.|++++|+.++..++.+++.+..
T Consensus 3 ~p~ii~i~-----G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIG-----SASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEE-----CCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 45556666 99999999999999999999999777888886553
No 119
>PHA03132 thymidine kinase; Provisional
Probab=98.97 E-value=5.9e-09 Score=95.21 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=72.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcC-HHHHH------
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVS-DDLVV------ 102 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~-~~~~~------ 102 (251)
.+.|+|+ |+.||||||+++.|++.+|..++.+.+=+..+..-.+..+..+++.+.++. ... ...+.
T Consensus 257 ~~fIv~E-----GidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F 331 (580)
T PHA03132 257 ACFLFLE-----GVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF 331 (580)
T ss_pred eEEEEEE-----CCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 6788888 999999999999999998555444322111110001234566666665332 111 11111
Q ss_pred --------HHHHHH---Hc----CCCCCCceEEeCCCCCHHH-------------HHHHHHHHHhcC-CCcCEEEEEecC
Q 025529 103 --------GIIDEA---MK----KPSCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQG-KKVDKVLNFAID 153 (251)
Q Consensus 103 --------~ll~~~---l~----~~~~~~~~Iidg~~~~~~~-------------~~~l~~~~~~~~-~~~~~vI~L~~~ 153 (251)
..++.. .. ....+..+|.|.++..-.. ...+..++.... ..||++|||+++
T Consensus 332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~ 411 (580)
T PHA03132 332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN 411 (580)
T ss_pred hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence 111111 11 1122345678988754321 111222333222 358999999999
Q ss_pred HHHHHHHHhcCc
Q 025529 154 DAVLEERITGRW 165 (251)
Q Consensus 154 ~e~~~~Rl~~r~ 165 (251)
++++++|+.+|.
T Consensus 412 pe~alkRIkkRg 423 (580)
T PHA03132 412 SEENLRRVKKRG 423 (580)
T ss_pred HHHHHHHHHhcC
Confidence 999999999884
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.96 E-value=1.3e-09 Score=103.68 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=31.6
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
|+|.|||||||||+++.|++++|+.+++++.+.|..
T Consensus 4 i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 4 VAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 344499999999999999999999999999887763
No 121
>PRK07667 uridine kinase; Provisional
Probab=98.91 E-value=7.9e-09 Score=82.93 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=28.0
Q ss_pred ecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRA 74 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~ 74 (251)
|+|+|++||||||+++.|++.++ ...++.|++...
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 34559999999999999999873 458888886544
No 122
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.90 E-value=2.5e-08 Score=78.70 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 71 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l 71 (251)
++..|++. |+|||||||+++.|+..+. +.+++.|.+
T Consensus 3 ~g~~i~~~-----G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFT-----GLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 34566777 9999999999999999882 566777654
No 123
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.89 E-value=1.7e-08 Score=81.21 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.6
Q ss_pred eecccCCCCCChhHHHHHHHHHh---CCceechhHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDML 72 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li 72 (251)
||+|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 56778999999999999999987 36778887754
No 124
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.89 E-value=8.7e-09 Score=81.58 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=85.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCH------
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSD------ 98 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~------ 98 (251)
..|+++ ||+||||||+++.|+..++..+++.....++.. .+. . ....+...+..+..+..
T Consensus 2 ~ii~l~-----G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 2 LLIVIS-----GPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGN 75 (180)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCe
Confidence 356666 999999999999999987554444332222110 000 0 00122233333322211
Q ss_pred --HHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529 99 --DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 176 (251)
Q Consensus 99 --~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~ 176 (251)
......+...+. .+..+|+|.-+ .....+... . ..+..++++..+.+.+.+|+..|.
T Consensus 76 ~y~~~~~~i~~~~~---~g~~vi~d~~~---~~~~~~~~~---~-~~~~~i~~~~~~~e~~~~Rl~~r~----------- 134 (180)
T TIGR03263 76 YYGTPKSPVEEALA---AGKDVLLEIDV---QGARQVKKK---F-PDAVSIFILPPSLEELERRLRKRG----------- 134 (180)
T ss_pred eeCCcHHHHHHHHH---CCCeEEEECCH---HHHHHHHHh---C-CCcEEEEEECCCHHHHHHHHHHcC-----------
Confidence 011122223322 23457777542 222222222 1 233456656777899999998773
Q ss_pred cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.+..+.+++|+..+...... ..++ .++.++ + +++++.+++.+.+.
T Consensus 135 ----------------------~~~~~~i~~rl~~~~~~~~~-~~~~----d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 ----------------------TDSEEVIERRLAKAKKEIAH-ADEF----DYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHhc-cccC----cEEEEC-C-CHHHHHHHHHHHHh
Confidence 34567888888877543221 1122 243344 3 78999999998874
No 125
>PTZ00301 uridine kinase; Provisional
Probab=98.88 E-value=1.2e-08 Score=82.86 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.9
Q ss_pred eecccCCCCCChhHHHHHHHHHh----C---CceechhHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY----C---LCHLATGDML 72 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~----~---~~~i~~~~li 72 (251)
||+|+|+|||||||+|+.|++++ + +..+..|++.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 57788999999999999998776 2 2355666554
No 126
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.88 E-value=1.6e-08 Score=82.01 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDM 71 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~l 71 (251)
.++++..+.|. |++||||||+++.|+..++ ..+++.|+.
T Consensus 2 ~~~~g~vi~I~-----G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 2 DKPKGIIIGIG-----GGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCCeEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 45667777777 9999999999999999875 456666654
No 127
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.87 E-value=2.9e-08 Score=90.46 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
..+..+++. |+|||||||+|+.++...|+.+++.|.+-. .........+.+
T Consensus 367 ~~p~LVil~-----G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L 417 (526)
T TIGR01663 367 APCEMVIAV-----GFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERAL 417 (526)
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHH
Confidence 456678888 999999999999999999999999987511 011112222333
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..++.+|+|..-....+...+.++....+.. ..++++++|.+++.+|...|.
T Consensus 418 ---~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~-v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 418 ---DQGKRCAIDNTNPDAASRAKFLQCARAAGIP-CRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred ---hCCCcEEEECCCCCHHHHHHHHHHHHHcCCe-EEEEEeCCCHHHHHHHHHhhc
Confidence 3346799999877777778777777777664 478899999999999999885
No 128
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.84 E-value=4.1e-08 Score=84.88 Aligned_cols=48 Identities=13% Similarity=-0.083 Sum_probs=36.0
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
-+|+|...........+..+....+..+ .+||+++|.+++++|..+|.
T Consensus 129 lvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 129 CLVLDDNFYYQSMRYEVYQLARKYSLGF-CQLFLDCPVESCLLRNKQRP 176 (340)
T ss_pred CceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEEeCCHHHHHHHHhcCC
Confidence 3678876666666666666665555554 78999999999999999884
No 129
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.83 E-value=9e-09 Score=82.84 Aligned_cols=117 Identities=21% Similarity=0.172 Sum_probs=62.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCc---eechhHHHHHHHHc----------CCc-------hHHHHHHHHHcCCCcCH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAA----------KTP-------LGIKAKEAMDKGELVSD 98 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~---~i~~~~li~~~~~~----------~~~-------~~~~i~~~l~~~~~~~~ 98 (251)
||+|+|++||||||+|+.|++.++.. .|+.|++....-.. ..+ +.+.+. .+.+|+.+..
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~-~L~~g~~v~~ 88 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK-DLKQGKPVDL 88 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH-HHHcCCcccc
Confidence 34677999999999999999999854 66666654321000 000 112222 2223332211
Q ss_pred HHH--HHHHHH-HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 99 DLV--VGIIDE-AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 99 ~~~--~~ll~~-~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
-.. ...... ........+-+|++|+-.... +.+. ...|+-||++++.+.++.|-..|.
T Consensus 89 P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr-------~~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 89 PVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR-------DLMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred cccchhcccccCCccccCCCcEEEEeccccccc--HHHH-------hhcCEEEEEeCCccHHHHHHHHHH
Confidence 111 111100 000111234567888743332 2222 235899999999999888866663
No 130
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.81 E-value=5e-08 Score=75.01 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=57.5
Q ss_pred ecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 114 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~ 114 (251)
|+|+|.|||||||+++.|++.+ +. .+++.+. +++.+.....+...- ....+..+..........
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~-~r~~l~~~~~~~~~~----------~~~~~~~~~~~a~~l~~~ 70 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFSRED----------REENIRRIAEVAKLLADA 70 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH-HHHhhhhccCCCcch----------HHHHHHHHHHHHHHHHhC
Confidence 5566999999999999999998 54 3445444 333222111100000 011111111110001112
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 115 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 115 ~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
+..+|+|..-........+..++. ..+..+|+|++|.+++.+|-.
T Consensus 71 G~~VIid~~~~~~~~R~~~~~l~~---~~~~~~i~l~~~~e~~~~R~~ 115 (149)
T cd02027 71 GLIVIAAFISPYREDREAARKIIG---GGDFLEVFVDTPLEVCEQRDP 115 (149)
T ss_pred CCEEEEccCCCCHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhCc
Confidence 345677765333444444444432 234578999999999999954
No 131
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.80 E-value=4.1e-07 Score=75.08 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec---hhHHH--------HHHHHc---CCchHHHHHHHHHc-CCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA---TGDML--------RAAVAA---KTPLGIKAKEAMDK-GEL 95 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~---~~~li--------~~~~~~---~~~~~~~i~~~l~~-~~~ 95 (251)
....|++. |+.|||||++|+.||+++|+.|+. +|++. +..... .... -.++..... ...
T Consensus 70 nSkvI~Ve-----GnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~-~di~~Fy~dPS~d 143 (393)
T KOG3877|consen 70 NSKVIVVE-----GNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRL-PDISMFYKDPSGD 143 (393)
T ss_pred cceEEEEe-----CCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCc-hhHHHhccCCCcc
Confidence 35578899 999999999999999999987664 33321 111100 0000 001110000 000
Q ss_pred cCHHHHHHHHH-------HHHcC-CCCCCceEEeCCCCCH-HHHHHHHH-------------HHH----hcCCCcCEEEE
Q 025529 96 VSDDLVVGIID-------EAMKK-PSCQKGFILDGFPRTE-VQAQKLDE-------------MLE----KQGKKVDKVLN 149 (251)
Q Consensus 96 ~~~~~~~~ll~-------~~l~~-~~~~~~~Iidg~~~~~-~~~~~l~~-------------~~~----~~~~~~~~vI~ 149 (251)
+......++.. .++.. +..+.|+|++..|.+- ...+.+.. .+. ..-..|.++||
T Consensus 144 lsa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViY 223 (393)
T KOG3877|consen 144 LSAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIY 223 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEE
Confidence 11111111111 11221 2345799999877652 22222210 000 11268999999
Q ss_pred EecCHHHHHHHHhcCc
Q 025529 150 FAIDDAVLEERITGRW 165 (251)
Q Consensus 150 L~~~~e~~~~Rl~~r~ 165 (251)
|++|...+.+|++.|.
T Consensus 224 ld~Pv~~v~~~Ik~rg 239 (393)
T KOG3877|consen 224 LDTPVNKVLENIKRRG 239 (393)
T ss_pred EcCCcHHHHHHHHhcC
Confidence 9999999999999885
No 132
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.80 E-value=2.4e-08 Score=76.82 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=54.6
Q ss_pred eecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 113 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~ 113 (251)
+|||+|.+||||||+|+.|.+++ | ..+++.|.+ +..+.++-.+...-+. +.+.++..-+-...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l-R~~l~~dl~fs~~dR~----------e~~rr~~~~A~ll~~ 72 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL-RHGLNADLGFSKEDRE----------ENIRRIAEVAKLLAD 72 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH-CTTTTTT--SSHHHHH----------HHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch-hhccCCCCCCCHHHHH----------HHHHHHHHHHHHHHh
Confidence 46677999999999999999998 3 455666543 3323222111111111 111111111100111
Q ss_pred CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 114 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 114 ~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
.+..+|+...-......+...+.+... .-+-||++||.+++.+|-
T Consensus 73 ~G~ivIva~isp~~~~R~~~R~~~~~~---~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 73 QGIIVIVAFISPYREDREWARELIPNE---RFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp TTSEEEEE----SHHHHHHHHHHHHTT---EEEEEEEES-HHHHHHHT
T ss_pred CCCeEEEeeccCchHHHHHHHHhCCcC---ceEEEEeCCCHHHHHHhC
Confidence 223455554333344444444443211 237899999999999994
No 133
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.79 E-value=1.9e-07 Score=74.23 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=61.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI 104 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l 104 (251)
.++..+++. |++||||||+++.|+..+ | ..+++.+. +++.+.....+...-+ ...+..+
T Consensus 16 ~~~~~i~i~-----G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~----------~~~~~~~ 79 (184)
T TIGR00455 16 HRGVVIWLT-----GLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDR----------KENIRRI 79 (184)
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHH----------HHHHHHH
Confidence 467788888 999999999999999987 2 34556554 3332222111110000 0111111
Q ss_pred HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 105 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
..........+..+|+|...........+...... .+-.+|||++|.+++.+|
T Consensus 80 ~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~---~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 80 GEVAKLFVRNGIIVITSFISPYRADRQMVRELIEK---GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcC---CCeEEEEEeCCHHHHHHh
Confidence 11111112234567777643334444444433221 234689999999999998
No 134
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.78 E-value=3.3e-07 Score=88.06 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=34.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 76 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~ 76 (251)
+.|+|- ||+||||||+|+.||++|++.+++++.+.|...
T Consensus 35 ~~i~id-----G~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALD-----GPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 456666 999999999999999999999999999988753
No 135
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.76 E-value=4.5e-08 Score=77.07 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=68.2
Q ss_pred eecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHH--c--CC-------------chHHHHHHHHHcCCCcCHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVA--A--KT-------------PLGIKAKEAMDKGELVSDDL 100 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~--~--~~-------------~~~~~i~~~l~~~~~~~~~~ 100 (251)
||+|+|...|||||+|+.|.+.| |...|+-|++....-+ . +. .....+...+.+....|+.
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a- 84 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA- 84 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH-
Confidence 57899999999999999999999 5677777776432211 0 00 1234455555554444331
Q ss_pred HHHHHHH--------HHcCCC-CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 101 VVGIIDE--------AMKKPS-CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 101 ~~~ll~~--------~l~~~~-~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
...++.. +.+... ...-+|+|||-... ...+. ..++..|.+..+.+++++|-..|.
T Consensus 85 r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~--y~p~~-------~~~d~~im~~~~y~~~krRr~~Rt 149 (225)
T KOG3308|consen 85 REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYN--YKPQV-------DLFDRIIMLTLDYETCKRRREART 149 (225)
T ss_pred hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEe--cchhh-------hhhhhheeeeccHHHHHHhhcccc
Confidence 1111111 111111 12347889974321 11111 235788999999999999988774
No 136
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.75 E-value=5.9e-07 Score=75.15 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=84.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC-C-
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ-K- 116 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~-~- 116 (251)
+|+|+|.+||||||..+.|.+ +|+..++= +|..++..++.......... +
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~ 54 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKV 54 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceE
Confidence 455679999999999999966 68776541 33444555544333222112 2
Q ss_pred ceEEeCCCCCHHHHHHHHHH---HHhcCCCcCEEEEEecCHHHHHHHHhcCc-CCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 117 GFILDGFPRTEVQAQKLDEM---LEKQGKKVDKVLNFAIDDAVLEERITGRW-IHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~---~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~-~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.+.+|-.. ......+.+. +...+.. -.++||+++++++++|.+.-+ .|+...
T Consensus 55 Ai~iD~R~--~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL~~--------------------- 110 (284)
T PF03668_consen 55 AIVIDIRS--REFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPLSS--------------------- 110 (284)
T ss_pred EEEEeCCC--hHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCCCC---------------------
Confidence 45677432 2222222222 2233444 368899999999999987543 444321
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
.+...+. +..-++...++.+..+ +.||++ .++.++-+.|.+.+.
T Consensus 111 -----~~~~le~----I~~Er~~L~~lr~~Ad-----~vIDTs~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 111 -----DGSLLEA----IEKERELLEPLRERAD-----LVIDTSNLSVHQLRERIRERFG 155 (284)
T ss_pred -----CCCcHHH----HHHHHHHHHHHHHhCC-----EEEECCCCCHHHHHHHHHHHhc
Confidence 1211222 3333444555555432 468885 889999998887653
No 137
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.73 E-value=1.8e-07 Score=75.30 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 103 (251)
+.+|..++|. |++||||||+++.|+..+ +..+++.|++- +.+.....+. ..-....+..
T Consensus 21 ~~~~~~i~i~-----G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~----------~~~~~~~~~~ 84 (198)
T PRK03846 21 GHKGVVLWFT-----GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS----------DADRKENIRR 84 (198)
T ss_pred CCCCEEEEEE-----CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC----------cccHHHHHHH
Confidence 4567788888 999999999999999987 34566655543 2211110000 0000122222
Q ss_pred HHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 104 IIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
+......... ....++..+... ......+.+++... .-++|||++|.+++.+|
T Consensus 85 l~~~a~~~~~-~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 85 VGEVAKLMVD-AGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHHHhh-CCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence 2111111111 123455556543 34555555554322 22479999999999999
No 138
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.73 E-value=9.2e-08 Score=78.30 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.1
Q ss_pred eecccCCCCCChhHHHHHHHHHhC-------CceechhHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 71 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~l 71 (251)
||+|+|++||||||+++.|+..+. +.+++.|++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 578889999999999999999883 345667765
No 139
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.71 E-value=3.8e-07 Score=75.19 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=38.7
Q ss_pred ccCCCCchhHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 8 NLEDVPSVDLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.|.+.+-+.+...+++.+.. .+.++..+.|. |++||||||+++.|+..+.
T Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~-----G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 6 QYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIA-----GPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred ccChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence 45666777888888888752 23566667777 9999999999999998873
No 140
>COG0645 Predicted kinase [General function prediction only]
Probab=98.70 E-value=3.3e-07 Score=70.61 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=73.8
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-----CCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCC
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-----KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 116 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~ 116 (251)
+.|.|||||||+++.|++.+|..+|..|.+. +.+.. ..+.|..-. .........+.......+..+.
T Consensus 6 ~~Gl~GsGKstlA~~l~~~lgA~~lrsD~ir-k~L~g~p~~~r~~~g~ys~-------~~~~~vy~~l~~~A~l~l~~G~ 77 (170)
T COG0645 6 VGGLPGSGKSTLARGLAELLGAIRLRSDVIR-KRLFGVPEETRGPAGLYSP-------AATAAVYDELLGRAELLLSSGH 77 (170)
T ss_pred EecCCCccHhHHHHHHHhhcCceEEehHHHH-HHhcCCcccccCCCCCCcH-------HHHHHHHHHHHHHHHHHHhCCC
Confidence 3399999999999999999999999997754 43443 111000000 0001223333333222333456
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 117 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+|+|+..-...+......+....+.. -..|.+.++.+++.+|+..|+
T Consensus 78 ~VVlDa~~~r~~~R~~~~~~A~~~gv~-~~li~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 78 SVVLDATFDRPQERALARALARDVGVA-FVLIRLEAPEEVLRGRLAARK 125 (170)
T ss_pred cEEEecccCCHHHHHHHHHHHhccCCc-eEEEEcCCcHHHHHHHHHHhC
Confidence 799998766666666655555544443 367899999999999999996
No 141
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.66 E-value=3.5e-07 Score=77.03 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=55.4
Q ss_pred cccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcC----CchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAK----TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
+|+|.|||||||+|+.|++.+ .+.+++.+.+. +... +...+.++.. +...+...+.
T Consensus 5 il~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~-----------l~s~v~r~ls- 69 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEARGS-----------LKSAVERALS- 69 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHHHH-----------HHHHHHHHHT-
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHHHH-----------HHHHHHHhhc-
Confidence 344999999999999999986 34456644443 1111 1111222221 2222223332
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
...-+|+|+.-......-.|..+....+.. ..+||+++|.+.+++|=..|.
T Consensus 70 --~~~iVI~Dd~nYiKg~RYelyclAr~~~~~-~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 70 --KDTIVILDDNNYIKGMRYELYCLARAYGTT-FCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp --T-SEEEE-S---SHHHHHHHHHHHHHTT-E-EEEEEEE--HHHHHHHHHHTT
T ss_pred --cCeEEEEeCCchHHHHHHHHHHHHHHcCCC-EEEEEECCCHHHHHHhhhccC
Confidence 234678888655555455555555555544 478999999999999977774
No 142
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.66 E-value=1.7e-06 Score=73.40 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc-eechhHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC-HLATGDMLRAAV 76 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~-~i~~~~li~~~~ 76 (251)
++|+.|++. |++||||||+|..|+++||.. +++. |.+++.+
T Consensus 90 ~~p~iIlI~-----G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~ 131 (301)
T PRK04220 90 KEPIIILIG-----GASGVGTSTIAFELASRLGIRSVIGT-DSIREVM 131 (301)
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHH
Confidence 467777777 999999999999999999987 5665 4455433
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.66 E-value=4.9e-08 Score=64.87 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
|+|+|+|||||||+++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5566999999999999999985
No 144
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.66 E-value=1.7e-08 Score=81.09 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=22.7
Q ss_pred eecccCCCCCChhHHHHHHHHHhC
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
||+|+|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999999999999996
No 145
>PLN02348 phosphoribulokinase
Probab=98.65 E-value=8.4e-08 Score=83.86 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred ecccCCCCCChhHHHHHHHHHhC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~ 62 (251)
|+|+|++||||||+++.|++.++
T Consensus 52 IGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 52 IGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 34559999999999999999986
No 146
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.64 E-value=1.5e-07 Score=75.84 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=68.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCc-------CHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV-------SDD 99 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~-------~~~ 99 (251)
..|..+++- |+|||||||++..+.+.+ ++.+|+.|++.... +....+... ..... ...
T Consensus 13 ~~P~~~i~a-----G~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~--~~~~~~~~~~~~a~~ 80 (199)
T PF06414_consen 13 EKPTLIIIA-----GQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKA--DPDEASELTQKEASR 80 (199)
T ss_dssp SS-EEEEEE-----S-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHH--HCCCTHHHHHHHHHH
T ss_pred cCCEEEEEe-----CCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhh--hhhhhHHHHHHHHHH
Confidence 467778888 999999999999999987 67889988753221 111111110 00000 012
Q ss_pred HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+...++...+.. +..+|+|+..........+...+...|... .++++.+|++..+.|...|.
T Consensus 81 ~~~~~~~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 81 LAEKLIEYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHHHHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHH
Confidence 233344444433 347999997776666665666666677764 56789999999999998885
No 147
>PRK07429 phosphoribulokinase; Provisional
Probab=98.63 E-value=6e-07 Score=77.59 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDM 71 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~l 71 (251)
+.++..|.|. |++||||||+++.|+..++ ..++..|++
T Consensus 5 ~~~~~IIgI~-----G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVA-----GDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEE-----CCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 3455566666 9999999999999999987 556777765
No 148
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.61 E-value=4.5e-07 Score=76.62 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.1
Q ss_pred eecccCCCCCChhHHHHHHHHHh---CCceechhHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDM 71 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~l 71 (251)
||+|+|++||||||+++.|+..+ +..++..|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 46777999999999999999887 4556777765
No 149
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.59 E-value=5.4e-07 Score=69.79 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=54.3
Q ss_pred cccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCC
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 115 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~ 115 (251)
|++|.+||||||+|..|.+++ |. .+++- |-+|..+..+-.+...-+..- -. --..+..++. . .
T Consensus 27 W~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dLgFs~edR~en--iR--RvaevAkll~----d---a 94 (197)
T COG0529 27 WFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDLGFSREDRIEN--IR--RVAEVAKLLA----D---A 94 (197)
T ss_pred EeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCCCCChHHHHHH--HH--HHHHHHHHHH----H---C
Confidence 455999999999999999998 43 33343 445554443221111111100 00 0011122221 1 1
Q ss_pred CceEEeCCCCCHHHHHHH-HHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 116 KGFILDGFPRTEVQAQKL-DEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 116 ~~~Iidg~~~~~~~~~~l-~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
..+++..|.........+ .+.+. ...-+=||++||.+++.+|
T Consensus 95 G~iviva~ISP~r~~R~~aR~~~~---~~~FiEVyV~~pl~vce~R 137 (197)
T COG0529 95 GLIVIVAFISPYREDRQMARELLG---EGEFIEVYVDTPLEVCERR 137 (197)
T ss_pred CeEEEEEeeCccHHHHHHHHHHhC---cCceEEEEeCCCHHHHHhc
Confidence 234466665554433332 23321 1123678999999999999
No 150
>COG4639 Predicted kinase [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=65.91 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=72.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC-C
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-P 112 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~-~ 112 (251)
.++++ |++||||||.++... .....++.+++-+.. |....+...++ .+..+.+++...+.. +
T Consensus 4 LvvL~-----G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~qrl 66 (168)
T COG4639 4 LVVLR-----GASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQK---NDELVWDILYKQLEQRL 66 (168)
T ss_pred EEEEe-----cCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhccc---cHHHHHHHHHHHHHHHH
Confidence 35566 999999999998643 256788888763321 11111111111 133344444443332 2
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..++..|+|..-....+...+..+...++..+ ++|+++.|.+.+.+|-+.|
T Consensus 67 ~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 67 RRGKFTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HcCCeEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhcc
Confidence 34567899988777777777777777777765 6689999999999997644
No 151
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.54 E-value=7.9e-07 Score=83.78 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
++..|++. |.|||||||+|+.|++++ +..+++.|++ |+.+..+..+....+ ..++..+.
T Consensus 459 ~~~~i~~~-----G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~-r~~l~~~~~~~~~~r----------~~~~~~l~ 522 (632)
T PRK05506 459 KPATVWFT-----GLSGSGKSTIANLVERRLHALGRHTYLLDGDNV-RHGLNRDLGFSDADR----------VENIRRVA 522 (632)
T ss_pred CcEEEEec-----CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh-hhccCCCCCCCHHHH----------HHHHHHHH
Confidence 56777777 999999999999999997 3466777654 443322111111111 11222222
Q ss_pred HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
.........+..+|+|...........+.+.+.. .+-.+|||++|.+++.+|.
T Consensus 523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~---~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 523 EVARLMADAGLIVLVSFISPFREERELARALHGE---GEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHhccc---CCeEEEEECCCHHHHHhhC
Confidence 1111111223456677532223343433333211 1347899999999999993
No 152
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.54 E-value=4.3e-06 Score=68.61 Aligned_cols=146 Identities=17% Similarity=0.262 Sum_probs=88.0
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH-cCC-CCCC
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM-KKP-SCQK 116 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l-~~~-~~~~ 116 (251)
||.|+|.+|||||+..+.|.+ +|+..++= +|..++-.+++... ... ...-
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~kv 54 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITKV 54 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCceE
Confidence 455679999999999999966 67765431 34444555544222 111 1223
Q ss_pred ceEEeCCCCCHHHHHHHHHHHH---hc-CCCcCEEEEEecCHHHHHHHHhcC-cCCCCCCceecccCCCCCCCCCCCCCC
Q 025529 117 GFILDGFPRTEVQAQKLDEMLE---KQ-GKKVDKVLNFAIDDAVLEERITGR-WIHPSSGRTYHTKFAPPKVPGVDDVTG 191 (251)
Q Consensus 117 ~~Iidg~~~~~~~~~~l~~~~~---~~-~~~~~~vI~L~~~~e~~~~Rl~~r-~~~~~~~~~~~~~~~~p~~~~~~~~~~ 191 (251)
.+++|- ++......+.+.+. .. +..+ -++||+++.+++.+|.+.- +.|+..+
T Consensus 55 Av~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~-------------------- 111 (286)
T COG1660 55 AVVIDV--RSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSE-------------------- 111 (286)
T ss_pred EEEEec--ccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCc--------------------
Confidence 566774 33344444444443 23 2233 5778999999999998754 4454322
Q ss_pred CCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 192 EPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 192 ~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
.+. +..-|..-++...++.+..+ ++||++ .++-++.+.|.+.+.
T Consensus 112 ------~~~----l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 112 ------DGL----LLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFL 156 (286)
T ss_pred ------cCc----HHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHc
Confidence 111 44444555555566665543 367874 899999999988764
No 153
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.53 E-value=8.6e-06 Score=72.79 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAA 75 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~ 75 (251)
++|..|++. |++||||||++..|+.++|+.+ +++| .+++.
T Consensus 253 k~p~vil~~-----G~~G~GKSt~a~~LA~~lg~~~ii~tD-~iR~~ 293 (475)
T PRK12337 253 PRPLHVLIG-----GVSGVGKSVLASALAYRLGITRIVSTD-AVREV 293 (475)
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEeehh-HHHHH
Confidence 467788888 9999999999999999999984 4664 44443
No 154
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.50 E-value=2.2e-07 Score=73.66 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=30.2
Q ss_pred eecccCCCCCChhHHHHHHHHHh-----CCceechhHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 73 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~ 73 (251)
||+|+|++||||||+|+.|++.+ +...++.|++.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 46788999999999999999997 457889998875
No 155
>PRK05439 pantothenate kinase; Provisional
Probab=98.46 E-value=9.4e-08 Score=81.68 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=25.9
Q ss_pred ecccCCCCCChhHHHHHHHHHhC-------CceechhHHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 72 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~li 72 (251)
|+|+|+|||||||+|+.|++.++ +.++++|+++
T Consensus 89 IgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34559999999999999998663 4567777764
No 156
>PHA00729 NTP-binding motif containing protein
Probab=98.44 E-value=5e-06 Score=67.76 Aligned_cols=113 Identities=15% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
.-.+|+|+ |+||+||||+|..|+++++.. .+..++... .+.. ....++...+.+.+...
T Consensus 16 ~f~nIlIt-----G~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d~~~-----------~~~fid~~~Ll~~L~~a 76 (226)
T PHA00729 16 GFVSAVIF-----GKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---QYVQ-----------NSYFFELPDALEKIQDA 76 (226)
T ss_pred CeEEEEEE-----CCCCCCHHHHHHHHHHHHHhhcccccchhhHH---hcCC-----------cEEEEEHHHHHHHHHHH
Confidence 34578888 999999999999999987521 222221100 0000 01112222233333333
Q ss_pred HcCCCCCCceEEeCCCCCHHH---H-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 109 MKKPSCQKGFILDGFPRTEVQ---A-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~---~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
........-+|+|++..-... . -.+..++. ..+++++++.++++.+.+++..|.
T Consensus 77 ~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 77 IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCC
Confidence 322111123588884322111 0 11233332 346889999999999999999875
No 157
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.40 E-value=1.3e-06 Score=69.47 Aligned_cols=26 Identities=35% Similarity=0.696 Sum_probs=22.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+..++|+ ||+||||+|+++.|.+.+.
T Consensus 2 ~r~ivl~-----Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLV-----GPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEE-----SSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-----CCCCCCHHHHHHHHHHhcc
Confidence 3457777 9999999999999999874
No 158
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.40 E-value=3.3e-07 Score=77.80 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=19.8
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCc
Q 025529 142 KKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 142 ~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+|+.||+++|.+.+.+|+..|.
T Consensus 195 d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 195 DFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred HhCCEEEEEECCHHHHHHHHHHHH
Confidence 347999999999999988876663
No 159
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.33 E-value=1.9e-06 Score=68.33 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=56.8
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC-------chHHHHH--HH---HHcC-------CCcCHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT-------PLGIKAK--EA---MDKG-------ELVSDD 99 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~-------~~~~~i~--~~---l~~~-------~~~~~~ 99 (251)
||+|+|..|||++++|+.||+++|+++++- +++........ ....... .. +..+ ......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 678889999999999999999999999998 66544332210 0001100 11 1100 111122
Q ss_pred HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+.......+........+|+.|..... ++. +....+-|+|.+|.+...+|++.+.
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~--------il~--~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCANY--------ILR--DIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHHH--------HTT--T-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHhh--------hhC--CCCCeEEEEEECCHHHHHHHHHHHc
Confidence 2223222233222222356665542111 111 1233588999999999999999873
No 160
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.33 E-value=2.6e-05 Score=63.67 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=84.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHc---------CCchHHHHHHHHHcCCC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAA---------KTPLGIKAKEAMDKGEL 95 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~---------~~~~~~~i~~~l~~~~~ 95 (251)
..+..|++. |-|+.|||++|+.|+..+ | ..+++++++-|+.... ..+.+..+++.+.
T Consensus 10 ~~kl~ivmV-----GLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a---- 80 (222)
T PF01591_consen 10 AGKLVIVMV-----GLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA---- 80 (222)
T ss_dssp ---EEEEEE-----SSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH----
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH----
Confidence 356678888 999999999999999877 3 3688999987776654 1233334443221
Q ss_pred cCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH-HhcCcCCCCCCcee
Q 025529 96 VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITGRWIHPSSGRTY 174 (251)
Q Consensus 96 ~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R-l~~r~~~~~~~~~~ 174 (251)
...+.+++ .-+.. ..+.--|+|+.-.+......+.+.+...+.. .++|..-|+++.++++ +...... ..+|
T Consensus 81 --~~~l~dl~-~~l~~-~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~-vlFIEsic~D~~ii~~NI~~~~~~---spDY 152 (222)
T PF01591_consen 81 --KEALEDLI-EWLQE-EGGQVAIFDATNSTRERRKMLVERFKEHGIK-VLFIESICDDPEIIERNIREKKQN---SPDY 152 (222)
T ss_dssp --HHHHHHHH-HHHHT-S--SEEEEES---SHHHHHHHHHHHHHTT-E-EEEEEEE---HHHHHHHHHHHHTT---SGGG
T ss_pred --HHHHHHHH-HHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCc-EEEEEEEeCCHHHHHHHHHHHHcC---Cccc
Confidence 12222222 22221 1234578999988999999888888777643 2555666777766655 4433211 0111
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHH
Q 025529 175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 220 (251)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~ 220 (251)
. ..-++...+.+.+|++.|....+++.
T Consensus 153 ~-------------------~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 153 K-------------------GMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp T-------------------TS-HHHHHHHHHHHHHHHHTT-----
T ss_pred c-------------------cCCHHHHHHHHHHHHHhhcccccccc
Confidence 1 00123345778899999999998876
No 161
>PLN02772 guanylate kinase
Probab=98.30 E-value=1.9e-05 Score=69.31 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=84.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHH---cCCch----HHHHHHHHHcCCCcCHH---
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVA---AKTPL----GIKAKEAMDKGELVSDD--- 99 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~---~~~~~----~~~i~~~l~~~~~~~~~--- 99 (251)
..+.++|. ||+||||+|+.+.|.+.+.. ..+......|..-. .+..+ -..+.+.+.++..+.-.
T Consensus 134 ~~k~iVls-----GPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~ 208 (398)
T PLN02772 134 AEKPIVIS-----GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVH 208 (398)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeec
Confidence 34467777 99999999999999887632 11222222111000 00000 02233344444332211
Q ss_pred -----HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCcee
Q 025529 100 -----LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTY 174 (251)
Q Consensus 100 -----~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~ 174 (251)
+-...+...+. ..+.+|+|--+....+.. .. ...+..++++..+.+++.+|+..|.
T Consensus 209 Gn~YGTsk~~V~~vl~---~Gk~vILdLD~qGar~Lr---~~----~l~~v~IFI~PPSlEeLe~RL~~RG--------- 269 (398)
T PLN02772 209 GNLYGTSIEAVEVVTD---SGKRCILDIDVQGARSVR---AS----SLEAIFIFICPPSMEELEKRLRARG--------- 269 (398)
T ss_pred CccccccHHHHHHHHH---hCCcEEEeCCHHHHHHHH---Hh----cCCeEEEEEeCCCHHHHHHHHHhcC---------
Confidence 11122222221 234566664443333332 21 1233334444455789999998874
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHH--HHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 175 HTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI--DYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~--~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.+.+++|+..+........ .+| .++.++ .++++.++++.++|.
T Consensus 270 ------------------------teseE~I~kRL~~A~~Ei~~~~~~~~f----D~vIvN--DdLe~A~~~L~~iL~ 317 (398)
T PLN02772 270 ------------------------TETEEQIQKRLRNAEAELEQGKSSGIF----DHILYN--DNLEECYKNLKKLLG 317 (398)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHhhccccCCC----CEEEEC--CCHHHHHHHHHHHHh
Confidence 3456789999988755332100 112 233344 389999999988773
No 162
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=5.8e-05 Score=61.87 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=32.8
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 77 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~ 77 (251)
.++.|..|+|= |++|.||||+|..+|.++|+.++-..|.+|+.+.
T Consensus 85 ~~~~p~IILIG-----GasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 85 KMKRPLIILIG-----GASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred ccCCCeEEEec-----CCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 34455555555 7899999999999999999976644455555554
No 163
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.15 E-value=5.6e-06 Score=75.93 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=25.6
Q ss_pred ecccCCCCCChhHHHHHHHHHh-CCceechhHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDM 71 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~-~~~~i~~~~l 71 (251)
|+|+||+||||||+++.|+..+ +...|+.|+.
T Consensus 68 IGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 68 VGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred EEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 3455999999999999999987 4457777764
No 164
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.05 E-value=9e-05 Score=56.76 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=49.6
Q ss_pred CEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh
Q 025529 145 DKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 224 (251)
Q Consensus 145 ~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~ 224 (251)
-.++.+.++++.+.+||..|. .++.+.+..|+..-.. +-.
T Consensus 116 Llvv~ita~p~VLaqRL~~RG---------------------------------REs~eeI~aRL~R~a~-------~~~ 155 (192)
T COG3709 116 LLVVCITASPEVLAQRLAERG---------------------------------RESREEILARLARAAR-------YTA 155 (192)
T ss_pred ceeEEEecCHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHhhcc-------ccc
Confidence 368899999999999999984 4466788888754221 111
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 225 KKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 225 ~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.++.||.++.++..-+...+.|.
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 24579999999999998888776653
No 165
>PHA03136 thymidine kinase; Provisional
Probab=98.04 E-value=0.00044 Score=60.34 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCc
Q 025529 142 KKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 142 ~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..||.+|||+++.+++.+|+.+|.
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRg 213 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARG 213 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 368899999999999999999985
No 166
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=0.00059 Score=53.91 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 137 LEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 137 ~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+.+....+|.+|||.++++++.+|+..|.
T Consensus 147 ~~~~~v~~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 147 LRSMDVSLDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred HhccccccceEEEeecChHHHHHHHHHHh
Confidence 33434689999999999999999999885
No 167
>PRK15453 phosphoribulokinase; Provisional
Probab=97.94 E-value=3.3e-05 Score=64.91 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 72 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li 72 (251)
++++.|.+. |++||||||+++.|++.++ ..+++.|++.
T Consensus 3 ~k~piI~It-----G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVT-----GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 355666666 9999999999999998874 3456666654
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.88 E-value=1.2e-05 Score=59.83 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.1
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
|.||||+||||+++.+++.++++++..+
T Consensus 3 l~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred EECcCCCCeeHHHHHHHhhccccccccc
Confidence 4499999999999999999998776553
No 169
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=97.86 E-value=4.1e-06 Score=47.72 Aligned_cols=36 Identities=58% Similarity=0.955 Sum_probs=30.2
Q ss_pred CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC
Q 025529 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD 199 (251)
Q Consensus 164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~ 199 (251)
|+.++.+|+.||..|+||..+++++.|+..|.+|.+
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 456788999999999999999999999999988753
No 170
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.84 E-value=1.4e-05 Score=66.29 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 142 KKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 142 ~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
.-+|+.||++++.+.+.+|+..|..
T Consensus 209 dffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 209 DFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred ccceEEEEecCCHHHHHHHHHHHHH
Confidence 4579999999999999999998863
No 171
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.81 E-value=0.00029 Score=54.28 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=26.3
Q ss_pred CCCCCChhHHHHHHHHHhC-CceechhHH
Q 025529 44 GPPGSGKGTQSPIIKDEYC-LCHLATGDM 71 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~-~~~i~~~~l 71 (251)
+.+||||||++..|++-|| +.|+.-|++
T Consensus 6 AtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 6 ATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred cCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 8999999999999999999 999988875
No 172
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.001 Score=50.99 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEe
Q 025529 44 GPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 121 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iid 121 (251)
||.||||||+...+-..+ ++.+++.|.+..+ +.+..+....++. .......+...+. ...+|..+
T Consensus 9 G~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A---------~r~ai~~i~~~I~---~~~~F~~E 75 (187)
T COG4185 9 GPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQA---------ARVAIDRIARLID---LGRPFIAE 75 (187)
T ss_pred cCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHH---------HHHHHHHHHHHHH---cCCCcceE
Confidence 999999999887665555 5788899876543 4444443222222 1112222222222 23456665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 122 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 122 g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.........+.+. -.++.|.-..+.+..--+.|...+|++.|-
T Consensus 76 TtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RV 118 (187)
T COG4185 76 TTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRV 118 (187)
T ss_pred EeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence 4433333333222 223445544444444456678899988874
No 173
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.78 E-value=0.0027 Score=52.11 Aligned_cols=185 Identities=10% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHH-cCC--CcCHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGE--LVSDDLVV 102 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~--~~~~~~~~ 102 (251)
.+.|..|+|. |..||||..+.+.|.+.++ +.+.+...--.. +...++-..+-..+- .|. .....+..
T Consensus 28 ~~~~vlIv~e-----G~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~i~IF~rSwY~ 100 (230)
T TIGR03707 28 TGARVVIVFE-----GRDAAGKGGTIKRITEHLNPRGARVVALPKPSDR--ERTQWYFQRYVQHLPAAGEIVLFDRSWYN 100 (230)
T ss_pred cCCCEEEEEe-----CCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcChHHHHHHHhCCCCCeEEEEeCchhh
Confidence 4568889999 9999999999999999984 333333211001 011122222212111 111 01122333
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 182 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~ 182 (251)
+.+..++..... -..+.....+...|+..+...|.. -+-++|.+|.++..+|+..|..++.+.
T Consensus 101 ~~lv~rv~~~~~-----~~~~~~~~~~I~~FEr~L~~~G~~-IlKfflhIsk~eQ~kRl~~r~~~p~k~----------- 163 (230)
T TIGR03707 101 RAGVERVMGFCT-----DEEYEEFLRQVPEFERMLVRDGIH-LFKYWLSVSREEQLRRFKARIDDPLKQ----------- 163 (230)
T ss_pred hHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCHHHHHHHHHHHhcCCccc-----------
Confidence 333333321100 000112234455666777766664 367899999999999999886433211
Q ss_pred CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHhc
Q 025529 183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKALS 250 (251)
Q Consensus 183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l~ 250 (251)
++-....-...+++..|...+..++..-+. ...|+.|+++..--. +.+.|.+.|+
T Consensus 164 -------------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~ 222 (230)
T TIGR03707 164 -------------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLD 222 (230)
T ss_pred -------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCC
Confidence 112222333445667777777666655442 346999999744332 3345555443
No 174
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00016 Score=66.64 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHHcCC--------------c---hHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAAKT--------------P---LGIKAKEAM 90 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~~~~--------------~---~~~~i~~~l 90 (251)
.+|..+++. ||||+|||++++.||..-+..++++. +++.++..... + +..++....
T Consensus 466 ~ppkGVLly-----GPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~ 540 (693)
T KOG0730|consen 466 SPPKGVLLY-----GPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALA 540 (693)
T ss_pred CCCceEEEE-----CCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh
Confidence 466679999 99999999999999999998888873 45444433211 1 111222221
Q ss_pred H----cCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 91 D----KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 91 ~----~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
. ++..+.+.++..++. .++.....+++++-+-.....+. +..+- ....+|-+||+..|+......+.+.
T Consensus 541 ~~R~g~~~~v~~RVlsqLLt-EmDG~e~~k~V~ViAATNRpd~I---D~ALl-RPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 541 GSRGGSSSGVTDRVLSQLLT-EMDGLEALKNVLVIAATNRPDMI---DPALL-RPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred hccCCCccchHHHHHHHHHH-HcccccccCcEEEEeccCChhhc---CHHHc-CCcccceeEeecCccHHHHHHHHHH
Confidence 1 111233444444442 22333333455443221111111 11111 2346899999999998777776544
No 175
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.77 E-value=0.0002 Score=67.99 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=60.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec-----hhHHHHHHHHcCC----chHHHHHHHHHcCCCcCHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA-----TGDMLRAAVAAKT----PLGIKAKEAMDKGELVSDDLVV 102 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~-----~~~li~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~ 102 (251)
...++++ |.||+||||+++.|++.+++..++ .+.+-++...... +.+..-.+ .....
T Consensus 215 ~~~~~~v-----glp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e---------~~~~~ 280 (664)
T PTZ00322 215 SLIVIMV-----GLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVE---------FRIAK 280 (664)
T ss_pred ceeEEec-----ccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHH---------HHHHH
Confidence 3455556 999999999999999998655443 4343322211110 00000000 11111
Q ss_pred HHHH---HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCC-C--cCEEEEEecCHHHHHHHHhcCc
Q 025529 103 GIID---EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGK-K--VDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 103 ~ll~---~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~-~--~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.++. ..+.. .+.+.|+|+.-.+......+.+.+...+. . ..+.|..-|++..++++-..|+
T Consensus 281 ~~~~d~~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~ 347 (664)
T PTZ00322 281 AIAHDMTTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRA 347 (664)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHH
Confidence 2221 11222 23478899877776666655555555443 1 2244444566666666655443
No 176
>PLN02165 adenylate isopentenyltransferase
Probab=97.77 E-value=2.8e-05 Score=67.00 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=34.7
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
.+.++..++|+ ||+||||||++..|++.++..+++.|.+
T Consensus 39 ~~~~g~iivIi-----GPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIM-----GATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEE-----CCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 35667788999 9999999999999999999999999875
No 177
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00036 Score=62.05 Aligned_cols=109 Identities=20% Similarity=0.301 Sum_probs=56.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh----C--CceechhHHHHHHHHcCCchHHHHHHHHHcCC-C-cCHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-L-VSDDLVVG 103 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~-~~~~~~~~ 103 (251)
+..++++ ||+||||||++..|+..+ | +.+++.| ..|... ...++.+..... . ........
T Consensus 223 ~~vi~lv-----GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~aA------~eQLk~yAe~lgvp~~~~~~~~~ 290 (432)
T PRK12724 223 RKVVFFV-----GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAA------IEQLKRYADTMGMPFYPVKDIKK 290 (432)
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhhH------HHHHHHHHHhcCCCeeehHHHHH
Confidence 4557777 999999999999999765 2 3344443 333211 123333322211 1 11111222
Q ss_pred HHHHHHcCCCCCCceEEe--CCC-CCHHHHHHHHHHHHhcCC--CcCEEEEEecCH
Q 025529 104 IIDEAMKKPSCQKGFILD--GFP-RTEVQAQKLDEMLEKQGK--KVDKVLNFAIDD 154 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iid--g~~-~~~~~~~~l~~~~~~~~~--~~~~vI~L~~~~ 154 (251)
+...+.. ...+.+++| |++ +...+...|.+++...+. ....++.|++..
T Consensus 291 -l~~~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 291 -FKETLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -HHHHHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 2233322 223568899 664 567788888777654322 223444455443
No 178
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.76 E-value=0.00011 Score=59.00 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=58.8
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH-HHcCC--c----hHHH-----HHHHHHcCCCcCHHHHH
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA-VAAKT--P----LGIK-----AKEAMDKGELVSDDLVV 102 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~-~~~~~--~----~~~~-----i~~~l~~~~~~~~~~~~ 102 (251)
++|+ ||+|+|||.+|-.||+++|.++|+.|.+.... +.-++ + +... ....+..|. ++.+..+
T Consensus 4 ~~i~-----GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~ 77 (233)
T PF01745_consen 4 YLIV-----GPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAH 77 (233)
T ss_dssp EEEE------STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHH
T ss_pred EEEE-----CCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHH
Confidence 5666 99999999999999999999999998643221 11111 1 0000 011222333 5566667
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcC--CCcCEEEEEecCHH-HHHHHHhcC
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQG--KKVDKVLNFAIDDA-VLEERITGR 164 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~--~~~~~vI~L~~~~e-~~~~Rl~~r 164 (251)
+.+...+......+++|++|.- +.-...+.+. ... .-.-.+.++.++++ .-+.|...|
T Consensus 78 ~~Li~~v~~~~~~~~~IlEGGS--ISLl~~m~~~--~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 78 ERLISEVNSYSAHGGLILEGGS--ISLLNCMAQD--PYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHHHTTTTSSEEEEEE----HHHHHHHHH---TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHHHhccccCceEEeCch--HHHHHHHHhc--ccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 7777777777667789999873 2222222211 111 11225667777775 555555554
No 179
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.74 E-value=3e-05 Score=62.91 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVA 77 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~~~ 77 (251)
||+|+|.|||||||+++.+.+. |.++ +++++.++..+.
T Consensus 2 iI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 5667799999999999999776 5555 899888777654
No 180
>PF13173 AAA_14: AAA domain
Probab=97.71 E-value=0.00035 Score=52.02 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=55.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhC----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
.+++. ||.|+||||+++.+++.+. +.+++.++.-..... . .+ +.+.+.+..
T Consensus 4 ~~~l~-----G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~----------~---------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 4 IIILT-----GPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA----------D---------PD-LLEYFLELI 58 (128)
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh----------h---------hh-hHHHHHHhh
Confidence 45666 9999999999999998875 667776653221000 0 00 122222221
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
.. ....+++|.+.........+..+.. . .++.-|++..|......+
T Consensus 59 ~~--~~~~i~iDEiq~~~~~~~~lk~l~d-~--~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 59 KP--GKKYIFIDEIQYLPDWEDALKFLVD-N--GPNIKIILTGSSSSLLSK 104 (128)
T ss_pred cc--CCcEEEEehhhhhccHHHHHHHHHH-h--ccCceEEEEccchHHHhh
Confidence 11 2345778987655444444444433 2 256778888888766644
No 181
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.70 E-value=4.3e-05 Score=59.99 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceechh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATG 69 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~ 69 (251)
|.+++. |+|||||||+|..|+..++ +.++.+.
T Consensus 2 ~~ili~-----G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 2 MLILVT-----GGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred CEEEEE-----CCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 456666 9999999999999999986 4555554
No 182
>PRK09169 hypothetical protein; Validated
Probab=97.69 E-value=0.00061 Score=70.27 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=76.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
....++++ |.+|+||||+++.|++.+++.++++|..+.+ ..|+.|.+++...+ ...+.-...+.+.+.
T Consensus 2109 ~~~aIvLI-----G~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr 2176 (2316)
T PRK09169 2109 GAQARRIE-----REVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR 2176 (2316)
T ss_pred hhccccee-----eCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc
Confidence 34468999 9999999999999999999999999988876 45677777776554 555555555655542
Q ss_pred CCCCCCceEE--eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 111 KPSCQKGFIL--DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 111 ~~~~~~~~Ii--dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
...|+ +|+......... .+... .++||+..+.+++.+|+...
T Consensus 2177 -----~~vVLSTGGGav~~~enr~---~L~~~----GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2177 -----WEVVLPAEGFGAAVEQARQ---ALGAK----GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred -----CCeEEeCCCCcccCHHHHH---HHHHC----CEEEEEECCHHHHHHHhccC
Confidence 13343 344333333322 22222 47999999999999998754
No 183
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.68 E-value=0.0057 Score=51.22 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=95.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHH-cCCC--cCHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGEL--VSDDLVVG 103 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~--~~~~~~~~ 103 (251)
..|..|+|. |..||||..+.+.|.+.++ +.+.+...--.. +...+.-...-..+- .|.. ....+..+
T Consensus 54 ~~~vlIv~e-----G~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~e--E~~~p~lWRfw~~lP~~G~i~IF~RSWY~~ 126 (264)
T TIGR03709 54 RRSLLLVLQ-----AMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAE--ELDHDFLWRIHKALPERGEIGIFNRSHYED 126 (264)
T ss_pred CCcEEEEEE-----CCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHH--HHcCchHHHHHHhCCCCCeEEEEcCccccc
Confidence 458888999 9999999999999999884 333333211000 001111111111111 1110 11122222
Q ss_pred HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCC
Q 025529 104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~ 183 (251)
.+.+++..... -..+.....+...|+..+...|... +-++|.+|.++..+|+..|..++.+.
T Consensus 127 vl~~rv~g~~~-----~~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k~------------ 188 (264)
T TIGR03709 127 VLVVRVHGLIP-----KAIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTKN------------ 188 (264)
T ss_pred hhhhhhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCccc------------
Confidence 22222211100 0001122334455666666666643 67889999999999999886433211
Q ss_pred CCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHh
Q 025529 184 PGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKAL 249 (251)
Q Consensus 184 ~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l 249 (251)
++-....-...+++..|...+..++..-.. ...|+.|+++..--. |.+.|.+.|
T Consensus 189 ------------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l 246 (264)
T TIGR03709 189 ------------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDAL 246 (264)
T ss_pred ------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHH
Confidence 112222334445677777777766665432 347999999744332 334444444
No 184
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.67 E-value=2.7e-05 Score=66.04 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=28.3
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
|+|+||+|||||+++..|++.++..+|++|.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 45559999999999999999999999999863
No 185
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.66 E-value=0.0055 Score=55.80 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=90.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCC---cCHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL---VSDDLVV 102 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~ 102 (251)
.+.+..|+|. |..||||+++.+.|.+.++ +.+.+...--.. +...++-..+-..+-..+. ....+..
T Consensus 37 ~~~~vlIv~e-----G~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e--E~~~~flwRfw~~lP~~G~I~IFdRSWY~ 109 (493)
T TIGR03708 37 AGFPVIILIE-----GWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE--ERERPPMWRFWRRLPPKGKIGIFFGSWYT 109 (493)
T ss_pred cCCeEEEEEe-----CCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH--HhcCcHHHHHHHhCCCCCeEEEEcCcccc
Confidence 5678889999 9999999999999999884 443333210000 0111222222222211111 1112223
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 182 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~ 182 (251)
+.+.+++..... -+.+.....+...|+..+...|... +-++|.+|.++..+|+..|..++...
T Consensus 110 ~vlverv~g~~~-----~~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k~----------- 172 (493)
T TIGR03708 110 RPLIERLEGRID-----EAKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPETR----------- 172 (493)
T ss_pred hhhHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCccc-----------
Confidence 333232211100 0001112334445666666666643 67899999999999999986443211
Q ss_pred CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCC
Q 025529 183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKP 237 (251)
Q Consensus 183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~ 237 (251)
+.-....-.-+++...|......++..-.. ...|+.|+++..
T Consensus 173 -------------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK 215 (493)
T TIGR03708 173 -------------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDD 215 (493)
T ss_pred -------------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 111212223334567777766666554432 346999999743
No 186
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00043 Score=58.17 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.....++|. ||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~-----GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFK-----GNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 345678899 999999999999999875
No 187
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.64 E-value=0.00014 Score=54.61 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 19 TELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.++.......-.++..+++. |+.||||||+++.+++.+|..
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~-----G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLK-----GDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEE-----cCCCCCHHHHHHHHHHHcCCC
Confidence 33444444333466788899 999999999999999999864
No 188
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.64 E-value=5.7e-05 Score=64.82 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
++.|++. ||+||||||+|..|+++++..+|+.|.+
T Consensus 4 ~~~i~i~-----GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIV-----GPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred ceEEEEE-----CCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 4567777 9999999999999999999999988873
No 189
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.58 E-value=0.00011 Score=59.75 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=24.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
-.-++|+ ||||+||||+|+.+|+.++..+..+
T Consensus 50 l~h~lf~-----GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 50 LDHMLFY-----GPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp --EEEEE-----SSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred cceEEEE-----CCCccchhHHHHHHHhccCCCeEec
Confidence 3468899 9999999999999999998766443
No 190
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.57 E-value=5e-05 Score=59.05 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=23.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 77 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~ 77 (251)
+|+|. |++|+||||+++.|++. |++++ .+..+..+.
T Consensus 1 rI~i~-----G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVIT-----GGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE 36 (163)
T ss_dssp -EEEE-------TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred CEEEE-----CCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence 46677 99999999999999998 88876 444444433
No 191
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00018 Score=61.08 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=23.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
....|++. ||||+|||++|+.||.++-+
T Consensus 176 ~NRliLlh-----GPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 176 WNRLILLH-----GPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeEEEEe-----CCCCCChhHHHHHHHHhhee
Confidence 34557777 99999999999999999843
No 192
>PRK06761 hypothetical protein; Provisional
Probab=97.56 E-value=4.5e-05 Score=64.46 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+.|++. |+|||||||+++.|++++..
T Consensus 4 ~lIvI~-----G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIE-----GLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHhcCc
Confidence 456677 99999999999999999864
No 193
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.55 E-value=2.9e-05 Score=64.78 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=28.3
Q ss_pred eecccCCCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 73 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~ 73 (251)
||+|+|++||||||+++.|++.++ ..+++.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 578889999999999999998873 45677776544
No 194
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.55 E-value=7.7e-05 Score=66.05 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
.|..|+++ ||||+|||++++.|++.++.+++.++.
T Consensus 46 ~p~~ILLi-----GppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45789999 999999999999999999998888863
No 195
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00083 Score=56.67 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=34.5
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCCc
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKTP 81 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~~ 81 (251)
.-|+++ ||||+|||.+|+..|-+-+-.++ +.++|+.+++.....
T Consensus 167 rgiLLy-----GPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLY-----GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEe-----CCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 348888 99999999999999998886555 456888887665433
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.53 E-value=0.00013 Score=61.35 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++++.+.....-..+..+++. |+||+|||++|+.|++.+|.+++..
T Consensus 6 ~~~~l~~~~l~~l~~g~~vLL~-----G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGYPVHLR-----GPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHHHHHHHHhcCCeEEEE-----cCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4444555554332334468889 9999999999999999998876633
No 197
>CHL00181 cbbX CbbX; Provisional
Probab=97.52 E-value=0.00051 Score=58.55 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|. ||||+||||+|+.+++.+
T Consensus 58 ~~~~ill~-----G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFT-----GSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 46668999 999999999999998876
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00087 Score=61.47 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=31.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+|.-+++. ||||+|||.+|+.+|.+++++++++.
T Consensus 221 ~PprGvLlH-----GPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 221 RPPRGVLLH-----GPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCCCceeee-----CCCCccHHHHHHHHhhhcCCceEeec
Confidence 455668889 99999999999999999999998874
No 199
>PHA03134 thymidine kinase; Provisional
Probab=97.49 E-value=0.0084 Score=51.67 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=19.6
Q ss_pred CEEEEEecCHHHHHHHHhcCc
Q 025529 145 DKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 145 ~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+.+|+++++.++..+|+.+|.
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R~ 185 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRARA 185 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHcC
Confidence 789999999999999999884
No 200
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00012 Score=56.21 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~ 74 (251)
-+|+|++. |+||+||||+++.+++.+.-.-+.++-++..
T Consensus 4 ~~mki~IT-----G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFIT-----GRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEe-----CCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 46788888 9999999999999999884433344433333
No 201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.48 E-value=0.00011 Score=65.07 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
+..|+|+ ||||+||||+|+.|++.++.+++.++.
T Consensus 50 ~~~ILli-----Gp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEE-----CCCCCCHHHHHHHHHHHhCChheeecc
Confidence 6789999 999999999999999999988887763
No 202
>PLN02840 tRNA dimethylallyltransferase
Probab=97.47 E-value=0.00012 Score=65.06 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
.+++.|+|. ||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~-----GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVIS-----GPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEE-----CCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345567777 999999999999999999988888865
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00012 Score=54.17 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.5
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+..+++. |||||||||+++.|+..+...
T Consensus 2 ~~~~~l~-----G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIV-----GPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEE-----CCCCCcHHHHHHHHHhccCCC
Confidence 3457777 999999999999999998653
No 204
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.006 Score=50.81 Aligned_cols=105 Identities=13% Similarity=0.269 Sum_probs=58.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID 106 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~ 106 (251)
...++|. |+||+|||+++..++..+ | +.++++.+++... +.....+. ....+
T Consensus 101 ~~~l~l~-----G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-----------~~~~~~~~-----~~~~~-- 157 (248)
T PRK12377 101 CTNFVFS-----GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-----------HESYDNGQ-----SGEKF-- 157 (248)
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-----------HHHHhccc-----hHHHH--
Confidence 3568889 999999999999999887 3 3456666665432 22221111 01111
Q ss_pred HHHcCCCCCCceEEeCC---CCCHHHHHHHHHHHHhc-C-CCcCEEEEEecCHHHHHHHHh
Q 025529 107 EAMKKPSCQKGFILDGF---PRTEVQAQKLDEMLEKQ-G-KKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 107 ~~l~~~~~~~~~Iidg~---~~~~~~~~~l~~~~~~~-~-~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
+.......-+|||.+ ..+..+...|..++... . ..| .+|--..+.+++.+++.
T Consensus 158 --l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 158 --LQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTNLNHEAMSTLLG 215 (248)
T ss_pred --HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHhh
Confidence 122223346788877 33444555666666432 1 223 45545566666555444
No 205
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00049 Score=60.11 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=29.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..-...+|+ ||||+||||+|+.|+...+..+...+
T Consensus 46 ~~l~SmIl~-----GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 46 GHLHSMILW-----GPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred CCCceeEEE-----CCCCCCHHHHHHHHHHhhCCceEEec
Confidence 345568899 99999999999999999987776554
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.43 E-value=0.00018 Score=62.56 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcc----CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 17 LMTELLRRMKCA----SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 17 ~~~~~~~~~~~~----~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
...+++.+.... ..+...+.|. |||||||||+++.|++.++.
T Consensus 59 ~i~~lv~~l~~~a~g~~~~r~il~L~-----GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 59 AIERFVNYFKSAAQGLEERKQILYLL-----GPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEE-----CCCCCCHHHHHHHHHHHHhh
Confidence 455566555432 1234556777 99999999999999999964
No 207
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.43 E-value=0.0041 Score=47.61 Aligned_cols=126 Identities=14% Similarity=0.074 Sum_probs=68.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcCCchHHH--HHH-HHHcCCC----cCHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIK--AKE-AMDKGEL----VSDDLV 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~--i~~-~l~~~~~----~~~~~~ 101 (251)
++..+++= |.+.||||++|..|++-+. +-++.+|.++....+..-..+.. ... ....+.. .+..+.
T Consensus 22 ~griVlLN-----G~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLN-----GGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEec-----CCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 45555556 9999999999999999885 45666665554433322111111 000 0000100 111111
Q ss_pred ---HHHHHHHHcC-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 102 ---VGIIDEAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 102 ---~~ll~~~l~~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..-....+.. .+++..+|.|.+.-+.........++. .-+..+|-+.||.|+..+|-..|
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~---g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLE---GCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHh---CCceEEEEeeccHHHHHHHHhhc
Confidence 1111222222 234456888888777555444444443 22347889999999999996655
No 208
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.001 Score=57.31 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCCchHHHHHHHHHcC--------------
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKG-------------- 93 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~-------------- 93 (251)
.+|.-+++. ||||+|||-+|++.|.+.+..|| ..++++++.+..+..+-+.+=.+-...
T Consensus 183 ~PPKGVLLY-----GPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg 257 (406)
T COG1222 183 DPPKGVLLY-----GPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG 257 (406)
T ss_pred CCCCceEee-----CCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence 455568888 99999999999999999987766 446888888776654433222111111
Q ss_pred ------CCcCHHHHHHHHHHHHcCCC---CCC--ceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 94 ------ELVSDDLVVGIIDEAMKKPS---CQK--GFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 94 ------~~~~~~~~~~ll~~~l~~~~---~~~--~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
..-.+..+.+.+.+.+++++ ... .+|. .+.|-....+. + ....+|..|.+-.|.+.....+
T Consensus 258 ~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPAL-----L--RPGR~DRkIEfplPd~~gR~~I 330 (406)
T COG1222 258 AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPAL-----L--RPGRFDRKIEFPLPDEEGRAEI 330 (406)
T ss_pred cccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhh-----c--CCCcccceeecCCCCHHHHHHH
Confidence 11224455555555555443 221 1222 23333222221 1 2356788888888887666655
Q ss_pred h
Q 025529 162 T 162 (251)
Q Consensus 162 ~ 162 (251)
.
T Consensus 331 l 331 (406)
T COG1222 331 L 331 (406)
T ss_pred H
Confidence 4
No 209
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.36 E-value=0.00011 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.894 Sum_probs=19.4
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4677999999999999998875
No 210
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=0.00011 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=19.5
Q ss_pred ecccCCCCCChhHHHHHHHHHhC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~ 62 (251)
|+|.||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 34449999999999999999864
No 211
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00054 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.5
Q ss_pred cccCCCCCChhHHHHHHHHHh
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~ 61 (251)
||+|-+||||||+|-.|.+.+
T Consensus 35 WiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 35 WITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred EEeccCCCCchhHHHHHHHHH
Confidence 444999999999999998887
No 212
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.0035 Score=52.46 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~ 74 (251)
.+..+++. ||||+|||+++..|+... |. .+++..+++..
T Consensus 97 ~~~nlll~-----Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFL-----GPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEE-----eCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 46679999 999999999999997765 33 33444455443
No 213
>PHA03135 thymidine kinase; Provisional
Probab=97.31 E-value=0.017 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+|-|. |+.|+||||+++.|++.
T Consensus 11 ~rIYlD-----G~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 11 IRVYLD-----GPFGIGKTSMLNEMPDH 33 (343)
T ss_pred EEEEEE-----CCCCCCHHHHHHHHHHh
Confidence 345555 99999999999999985
No 214
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.31 E-value=0.00016 Score=56.65 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=17.8
Q ss_pred cccCCCCCChhHHHHHHHHHh
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~ 61 (251)
+|+|+||+||||+.+.+.+.+
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHh
Confidence 445999999999999999988
No 215
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0038 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=22.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..++++ ||.|+||||++..||..|
T Consensus 173 ~~~vi~lv-----GptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILV-----GPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45678888 999999999999999876
No 216
>PLN02748 tRNA dimethylallyltransferase
Probab=97.29 E-value=0.00026 Score=63.95 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=32.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
.++..|+|+ ||+|||||+++..|++.++..+|+.|.
T Consensus 20 ~~~~~i~i~-----GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVM-----GPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 455678888 999999999999999999999999985
No 217
>PF05729 NACHT: NACHT domain
Probab=97.27 E-value=0.00018 Score=55.37 Aligned_cols=22 Identities=36% Similarity=0.809 Sum_probs=19.4
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++|+|+||+||||+++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 4556999999999999999887
No 218
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.25 E-value=0.0016 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.3
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
|+|+|-|.|||||.|..|.+.+
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHH
Confidence 4556999999999999999887
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.24 E-value=0.00033 Score=60.29 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+..+++. |+||+||||+++.|++.++.+++.+
T Consensus 64 ~~~ilL~-----G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 64 DRRVMVQ-----GYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CCcEEEE-----eCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3459999 9999999999999999999887644
No 220
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00073 Score=50.09 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=19.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
...+++. |++|+|||++++.+++.+
T Consensus 4 ~~~~~i~-----G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVIS-----GPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEE-----E-TTSSHHHHHHHHHHHH
T ss_pred CcccEEE-----cCCCCCHHHHHHHHHHHh
Confidence 3456666 999999999999999987
No 221
>PLN02796 D-glycerate 3-kinase
Probab=97.23 E-value=0.00017 Score=62.40 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 71 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l 71 (251)
+|..+.|. |++||||||+++.|+..+. ...++.|++
T Consensus 99 ~pliIGI~-----G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 99 PPLVIGIS-----APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCEEEEEE-----CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 45555666 9999999999999998884 344566544
No 222
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.22 E-value=0.00032 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCCCCChhHHHHHHHHHhCCceec
Q 025529 44 GPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
|+||+|||++++.+++.++.+++.
T Consensus 6 G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 6 GPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp ESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCHHHHHHHHHHHhhcceEE
Confidence 999999999999999999876543
No 223
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.22 E-value=0.00017 Score=59.81 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.4
Q ss_pred cCCCCCChhHHHHHHHHHhC
Q 025529 43 AGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 43 ~G~~gsGKST~a~~La~~~~ 62 (251)
.||+||||||+++.+++.+.
T Consensus 2 iGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 49999999999999999884
No 224
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.19 E-value=0.00099 Score=49.22 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHhhc--cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 20 ELLRRMKC--ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 20 ~~~~~~~~--~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+++..+.. .|.+|..+.|- |++|+|||.+++.||+.+
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfH-----G~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFH-----GWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEee-----cCCCCcHHHHHHHHHHHH
Confidence 34444433 46789899999 999999999999999984
No 225
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.14 E-value=0.00045 Score=63.01 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=29.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.|.-+++. ||||+|||.+|+.++..++.+++.++
T Consensus 258 ~pkGILL~-----GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 258 TPRGLLLV-----GIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 45668999 99999999999999999998877653
No 226
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.14 E-value=0.00046 Score=61.47 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
-..+|+|+ |++||||||+++.|++.||...+
T Consensus 218 ~~~~IvI~-----G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAIL-----GGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEE-----cCCCCCHHHHHHHHHHHhCCCee
Confidence 35568888 99999999999999999987754
No 227
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.13 E-value=0.00073 Score=50.37 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=25.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~ 68 (251)
+..+++. |+||+||||+++.+++.+ +..++..
T Consensus 19 ~~~v~i~-----G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLY-----GPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 4468888 999999999999999987 5554444
No 228
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.13 E-value=0.0005 Score=61.44 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
...++|. ||||+|||++|+.|++.++.+++.++
T Consensus 108 ~~~iLl~-----Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLI-----GPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEE-----cCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4568999 99999999999999999998887665
No 229
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.12 E-value=0.0069 Score=47.37 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=66.7
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCc---eechhHHHHHHHHcC-----------CchHH----HHHHHHHcCCCcCHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAAK-----------TPLGI----KAKEAMDKGELVSDDL 100 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~---~i~~~~li~~~~~~~-----------~~~~~----~i~~~l~~~~~~~~~~ 100 (251)
||+|+|..+|||-|++..|.++++.. ++..++-+....... .++.. .+.++.+......++.
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 46777999999999999999998742 466655554444321 11111 1111111111112234
Q ss_pred HHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 101 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 101 ~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
+.+.+...+. ..-|||++. +...+...|.+.+ + ..-..|.+.+++++..+|.
T Consensus 81 F~r~~~~~~~----~~v~iIsD~-Rr~~dv~~f~~~~---g-~~~~~VRV~AseetR~~Rg 132 (182)
T TIGR01223 81 FCRKIVEGIS----QPIWLVSDT-RRVSDIQWFREAY---G-AVTQTVRVVALEQSRQQRG 132 (182)
T ss_pred HHHHHHhccC----CCEEEEeCC-CcccHHHHHHHHc---C-CceEEEEEecCHHHHHHHH
Confidence 4444333221 235677764 6677777776653 2 2347889999999999996
No 230
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.12 E-value=0.0007 Score=50.03 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=24.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+++..|++. |+-||||||+++.+++.+|..
T Consensus 13 ~~g~vi~L~-----GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLS-----GDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEE-----ESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHHHcCCC
Confidence 466778888 999999999999999999764
No 231
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.09 E-value=0.0005 Score=61.17 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=28.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|..+++. ||||+|||++|+.++..++.+++.+
T Consensus 163 ~~p~gvLL~-----GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 163 EPPKGVLLY-----GPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCceEEE-----CCCCCChHHHHHHHHHHhCCCEEEe
Confidence 356678999 9999999999999999998766544
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.00057 Score=59.63 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDML 72 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li 72 (251)
+.|..+.|. ||||+|||.+|+.+++++|..++.+ .++.
T Consensus 146 k~PlgllL~-----GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIW-----GGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEee-----CCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 456666777 9999999999999999999876654 4444
No 233
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.08 E-value=0.00031 Score=62.16 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-|++- |+||+||||+|+.||+.|
T Consensus 265 GILIA-----G~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIA-----GAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEe-----cCCCCChhHHHHHHHHHH
Confidence 38888 999999999999999988
No 234
>PRK10646 ADP-binding protein; Provisional
Probab=97.07 E-value=0.0016 Score=50.01 Aligned_cols=45 Identities=22% Similarity=0.117 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.+-..++...+...-+++..+++. |.-||||||+++.|++.+|+.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~-----GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLY-----GDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEE-----CCCCCCHHHHHHHHHHHcCCC
Confidence 333444555554333456678888 999999999999999999864
No 235
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.07 E-value=0.0056 Score=50.28 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCch-HHHHHHHHHcCCC--cCHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPL-GIKAKEAMDKGEL--VSDDLVVG 103 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~-~~~i~~~l~~~~~--~~~~~~~~ 103 (251)
+.|..|+|. |..||||+.+.+.|.+.++ +.+.+...--.. +...++ ....+..-..|.. ....+...
T Consensus 29 ~~~vlIl~e-----G~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e--E~~~p~lwRfw~~lP~~G~I~if~rSWY~~ 101 (228)
T PF03976_consen 29 GIPVLILFE-----GWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE--ELRRPFLWRFWRALPARGQIGIFDRSWYED 101 (228)
T ss_dssp HHEEEEEEE-----ESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH--HHTS-TTHHHHTTS--TT-EEEEES-GGGG
T ss_pred CCcEEEEEe-----ccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh--HcCCCcHHHHHHhCCCCCEEEEEecchhhH
Confidence 345778888 9999999999999999884 333333211111 111111 1111111111100 00111122
Q ss_pred HHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCC
Q 025529 104 IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 183 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~ 183 (251)
.+..++...... ..+.....+...|+..+...|... +-|+|.+|.++..+|+..+..++.+
T Consensus 102 ~l~~rv~~~~~~-----~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~------------- 162 (228)
T PF03976_consen 102 VLVERVEGFIDE-----AEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLK------------- 162 (228)
T ss_dssp GTHHHHTTSSTH-----HHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCC-------------
T ss_pred HHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCccc-------------
Confidence 222222111000 001122344455666666666543 6789999999999999988643211
Q ss_pred CCCCCCCCCCcccCCCCcHHH--HHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCC
Q 025529 184 PGVDDVTGEPLIQRKDDTAAV--LKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKP 237 (251)
Q Consensus 184 ~~~~~~~~~~~~~r~~~~~~~--~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~ 237 (251)
+-..++.. -.+++..|...+..++..-+. ...|+.|+++..
T Consensus 163 -------------~wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk 206 (228)
T PF03976_consen 163 -------------RWKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDK 206 (228)
T ss_dssp -------------GGG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred -------------cccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence 11222232 234567777766666654332 346999999743
No 236
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.05 E-value=0.0003 Score=62.26 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 71 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~l 71 (251)
+|..|.|. |+.||||||+++.|...+. ...|+.|++
T Consensus 211 ~PlIIGIs-----G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGFS-----APQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 45555555 9999999999999987662 445666654
No 237
>PF13245 AAA_19: Part of AAA domain
Probab=97.04 E-value=0.00081 Score=45.38 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=17.0
Q ss_pred CeEEEEEeecccCCCCCChh-HHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKG-TQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKS-T~a~~La~~~ 61 (251)
+...++. |||||||| |+++.++..+
T Consensus 10 ~~~~vv~-----g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQ-----GPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHHHH
Confidence 4456668 99999999 4555544443
No 238
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=97.04 E-value=0.00048 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.7
Q ss_pred CCC-cCEEEEEecCHHHHHHHHhcCc
Q 025529 141 GKK-VDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 141 ~~~-~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
... ||++|||++|++++++|+.+|+
T Consensus 64 ~~~~pdl~IYL~~~~e~~~~RI~kRg 89 (146)
T PF01712_consen 64 IPKSPDLIIYLDASPETCLERIKKRG 89 (146)
T ss_dssp CCHH-SEEEEEE--HHHHHHHHHHCT
T ss_pred hhccCCeEEEEeCCHHHHHHHHHHhC
Confidence 355 9999999999999999999994
No 239
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.04 E-value=0.0017 Score=49.29 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=35.1
Q ss_pred chhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 14 SVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+++-..++.........++..+++. |.-||||||+++-+++.+|+
T Consensus 7 ~~~~t~~lg~~l~~~l~~g~Vv~L~-----GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 7 DEEATLALGERLAEALKAGDVVLLS-----GDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEE-----cCCcCChHHHHHHHHHHcCC
Confidence 4445555555555555677888898 99999999999999999985
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.03 E-value=0.0018 Score=52.91 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=29.8
Q ss_pred CchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 13 PSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
....++..+-+... ...+..+++. |++|+|||++++.+++..
T Consensus 21 ~~~~~~~~l~~~~~--~~~~~~lll~-----G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 21 GNAELLAALRQLAA--GKGDRFLYLW-----GESGSGKSHLLQAACAAA 62 (226)
T ss_pred CcHHHHHHHHHHHh--cCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 34445554444332 3456678899 999999999999998876
No 241
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.03 E-value=0.0012 Score=57.23 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=29.0
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..++.........++..|-|. |+|||||||++..|...+
T Consensus 41 ~~~~l~~~~~~~~~~~~~igi~-----G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 41 LAQELLDALLPHTGNALRIGIT-----GVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHHhhcCCCcEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 4445555544334567777777 999999999999987776
No 242
>PRK04195 replication factor C large subunit; Provisional
Probab=97.03 E-value=0.0012 Score=60.48 Aligned_cols=34 Identities=35% Similarity=0.668 Sum_probs=28.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++..++|. ||||+||||+++.|++.+++.++..
T Consensus 37 ~~~~~lLL~-----GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 37 KPKKALLLY-----GPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 336678888 9999999999999999999876654
No 243
>PHA02244 ATPase-like protein
Probab=97.02 E-value=0.001 Score=58.20 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=30.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
+..+.+. ||||+|||++++.|+..++.+++.+..+
T Consensus 119 ~~PVLL~-----GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 119 NIPVFLK-----GGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCCEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 3448888 9999999999999999999998877644
No 244
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.02 E-value=0.00046 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.0
Q ss_pred ecccCCCCCChhHHHHHHHHHhC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~ 62 (251)
|+|+||+||||||+...|...+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 44559999999999998887764
No 245
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.00 E-value=0.00077 Score=60.05 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=29.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|..+++. ||||+|||++++.++...+.+++..
T Consensus 177 ~~pkgvLL~-----GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 177 DPPRGVLLY-----GPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 356678899 9999999999999999998776654
No 246
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.99 E-value=0.0014 Score=60.32 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.1
Q ss_pred cCCCCCChhHHHHHHHHHhCCceec
Q 025529 43 AGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 43 ~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
+||+||||||..+.|++.+|+.+..
T Consensus 51 tGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 51 TGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4999999999999999999876543
No 247
>PRK08116 hypothetical protein; Validated
Probab=96.99 E-value=0.014 Score=49.33 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=28.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 74 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~ 74 (251)
+.-++|. |++|+|||.++..++..+ + +.++++.+++..
T Consensus 114 ~~gl~l~-----G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLW-----GSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3348888 999999999999999876 3 345666666544
No 248
>PRK09087 hypothetical protein; Validated
Probab=96.98 E-value=0.0011 Score=54.54 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDML 72 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li 72 (251)
.+.++|. |++|||||++++.+++..+..+++.+++.
T Consensus 44 ~~~l~l~-----G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 44 SPVVVLA-----GPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 4458888 99999999999999999988888886543
No 249
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00096 Score=56.91 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
+..++|+ ||.+||||.+|-.||+++|..+||+|.+
T Consensus 3 ~~~i~I~-----GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIA-----GPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEE-----CCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 4457777 9999999999999999999999999865
No 250
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.98 E-value=0.00086 Score=59.14 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=28.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+|..+++. ||||+|||++++.++..++.+++.+
T Consensus 155 ~p~gvLL~-----GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLY-----GPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHhCCCCEEec
Confidence 46668899 9999999999999999998776554
No 251
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.006 Score=56.20 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=34.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVA 77 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~ 77 (251)
|.-++++ ||||||||-+|++.|.+-|..||++. +|+.+++.
T Consensus 545 PsGvLL~-----GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 545 PSGVLLC-----GPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCceEEe-----CCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 5568899 99999999999999999999988884 66665544
No 252
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.97 E-value=0.0015 Score=56.05 Aligned_cols=31 Identities=39% Similarity=0.580 Sum_probs=25.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~ 65 (251)
..+..++|. ||||+|||++++.++..++..+
T Consensus 28 ~~~~~~ll~-----Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 28 EALDHLLLY-----GPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCeEEEE-----CCCCCCHHHHHHHHHHHhCCCE
Confidence 344568888 9999999999999999997653
No 253
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.97 E-value=0.00088 Score=58.12 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=27.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
..+++++ |++||||||+++.|+..++.+++.
T Consensus 162 ~~~~~~~-----G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAIL-----GGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEE-----CCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4578999 999999999999999999987743
No 254
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0011 Score=58.73 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++..-.++. ||||+||||+..++|..+++.+.+.
T Consensus 233 awKRGYLLY-----GPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 233 AWKRGYLLY-----GPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred chhccceee-----CCCCCCHHHHHHHHHhhcCCceEEe
Confidence 345568999 9999999999999999999877665
No 255
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.95 E-value=0.00087 Score=59.76 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..++|. ||||+|||++|+.|++.++.++...+
T Consensus 117 ~~iLL~-----GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 117 SNILLI-----GPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred ceEEEE-----CCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 468888 99999999999999999988876543
No 256
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.95 E-value=0.00058 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.6
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
+.++|+|||||||++..++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3444999999999999998876
No 257
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.95 E-value=0.00062 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.8
Q ss_pred ecccCCCCCChhHHHHHHHHHhC
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~ 62 (251)
++|+|++|||||++|..++...+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 45669999999999999988765
No 258
>COG4240 Predicted kinase [General function prediction only]
Probab=96.93 E-value=0.00071 Score=54.86 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=24.1
Q ss_pred ecccCCCCCChhHHHHHHHHHh---C---CceechhHHH
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY---C---LCHLATGDML 72 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~---~---~~~i~~~~li 72 (251)
++|+||-||||||++..|...+ | ...+|.||+.
T Consensus 53 ~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 53 VGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred EEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence 3456999999999998776555 2 3566778764
No 259
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.93 E-value=0.13 Score=46.95 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
.+.+..|+|. |..+|||....+.|.+.++ +.+.+...--.. +...++-..+-..+-..+.+
T Consensus 296 ~~~~vlivfe-----G~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~--E~~~~~lwRf~~~lP~~G~i--------- 359 (493)
T TIGR03708 296 RKRSLVLVFE-----GWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDE--EKAQHYLWRFWRHIPRRGRI--------- 359 (493)
T ss_pred CCCCEEEEEE-----cccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHH--HHcCcHHHHHHHhCCCCCeE---------
Confidence 5678899999 9999999999999999884 444333210000 00111111111111111100
Q ss_pred HHHHcCCCCCCceEE---eCCCCC------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529 106 DEAMKKPSCQKGFIL---DGFPRT------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 176 (251)
Q Consensus 106 ~~~l~~~~~~~~~Ii---dg~~~~------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~ 176 (251)
.+..-.-...+++ .|+... ..+...|+..+...|.. -+-++|.+|.++..+|+..|..++...
T Consensus 360 --~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~-ivKf~LhIsk~EQ~~R~~~r~~~p~k~----- 431 (493)
T TIGR03708 360 --TIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAI-VVKFWLHIDKEEQLRRFEERENTPFKR----- 431 (493)
T ss_pred --EEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEEcCHHHHHHHHHHHhcCCccC-----
Confidence 0000000011222 233221 23334456666666664 367899999999999999986433211
Q ss_pred cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---HHHHHHHHhc
Q 025529 177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---VTSEVQKALS 250 (251)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v~~~i~~~l~ 250 (251)
++-...+-.-+++...|...+..++..-.. ...|++|+++..--. |.+.|.+.|+
T Consensus 432 -------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~ 490 (493)
T TIGR03708 432 -------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE 490 (493)
T ss_pred -------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence 111222233345567777766666554442 347999999744322 3344444443
No 260
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.0009 Score=61.48 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=29.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..+..+++. ||||+|||++++.++...+.+++.++
T Consensus 86 ~~~~giLL~-----GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 86 KIPKGVLLV-----GPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCCcEEEE-----CCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 345668899 99999999999999999988877653
No 261
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.92 E-value=0.0017 Score=56.69 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=65.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+...+++- |++|||||++...|.+. +..++++..+.+.. ++.+|.... ..+ +-..+...+...+.
T Consensus 140 ~~~~ivl~-----G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~-----~qp-sQ~~Fe~~l~~~l~ 204 (345)
T PRK11784 140 QFPLVVLG-----GNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG-----PQP-SQKDFENLLAEALL 204 (345)
T ss_pred cCceEecC-----CCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC-----CCc-chHHHHHHHHHHHH
Confidence 34445555 99999999999999875 77788887654431 122211110 000 12234445555555
Q ss_pred CCCCCCceEEeCCCCCHHHH---HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 111 KPSCQKGFILDGFPRTEVQA---QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~---~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+..+.+++++-.+.+-.. ..|.+.|. . .-+|++++|.+...+|+....
T Consensus 205 ~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~---~--~~~v~i~~~~e~Rv~~l~~~Y 257 (345)
T PRK11784 205 KLDPARPIVVEDESRRIGRVHLPEALYEAMQ---Q--APIVVVEAPLEERVERLLEDY 257 (345)
T ss_pred cCCCCCeEEEEeccccccCccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence 55544566676532222111 12222222 2 236789999999999998764
No 262
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.92 E-value=0.0068 Score=46.01 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
..++++. |+||+||||+...|+.. |+..+
T Consensus 9 ~~~fIlt-----GgpGaGKTtLL~aLa~~-Gfatv 37 (183)
T COG3911 9 HKRFILT-----GGPGAGKTTLLAALARA-GFATV 37 (183)
T ss_pred ceEEEEe-----CCCCCcHHHHHHHHHHc-Cceee
Confidence 3467777 99999999999999886 65443
No 263
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0017 Score=60.66 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..+++.+++. ||||+|||++++.+|+.+|-.++-+
T Consensus 347 ~~kGpILcLV-----GPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 347 KLKGPILCLV-----GPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred cCCCcEEEEE-----CCCCCCchhHHHHHHHHhCCCEEEE
Confidence 4578889999 9999999999999999998665533
No 264
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.91 E-value=0.021 Score=45.36 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 131 QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 131 ~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..|.++...+|..+ .+||+..+-.+++++=.-|
T Consensus 110 ~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~R 142 (291)
T KOG4622|consen 110 HKFQKIAKDHGCIF-GIIFLASGIDEALQANSHR 142 (291)
T ss_pred hHHHHHHHHcCCee-eeeehhhhHHHHHHhcccc
Confidence 34556666677665 6788999999999886655
No 265
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.90 E-value=0.0011 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+-..++|. ||+|+|||.+++.|++.+..
T Consensus 2 p~~~~ll~-----GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 2 PKSNFLLA-----GPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp -SEEEEEE-----SSTTSSHHHHHHHHHHHHT-
T ss_pred CEEEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence 34567778 99999999999999999985
No 266
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0017 Score=59.16 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
.+......++.+..++|. ||||+||||+|+.+++.++.
T Consensus 25 ~L~~~i~~~~l~~~~Lf~-----GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 25 LIINALKKNSISHAYIFA-----GPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence 334444445556678999 99999999999999999864
No 267
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.88 E-value=0.0034 Score=55.30 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=29.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD 70 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~ 70 (251)
.++..|+++ ||.|+||||....||.+|. +-+|++|.
T Consensus 201 ~~~~vi~LV-----GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 201 EQKRVIALV-----GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred ccCcEEEEE-----CCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 357789999 9999999999889988884 45666664
No 268
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.85 E-value=0.00063 Score=50.45 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++++ |+||.||||+++.|++..|..+..+
T Consensus 2 vLle-----g~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLE-----GVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEE-----S---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeE-----CCCccHHHHHHHHHHHHcCCceeEE
Confidence 4566 9999999999999999998765533
No 269
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.85 E-value=0.0041 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~ 70 (251)
.+..++|. |++|+|||++++.++... .+.+++...
T Consensus 41 ~~~~~~l~-----G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 41 ADRFFYLW-----GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34468888 999999999999999876 445555544
No 270
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0055 Score=56.00 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=59.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh-----HHHHHHHHcCCchH-HHHHHHHHcCCCcCHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG-----DMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLV 101 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~-----~li~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~ 101 (251)
.++-..-++|. ||-|+||||+|+.||+.+++..-.++ +..++.+..++... .++...-.+| -+-+
T Consensus 34 ~~ri~hAYlfs-----G~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~g----Vddi 104 (515)
T COG2812 34 NGRIAHAYLFS-----GPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTG----VDDI 104 (515)
T ss_pred hCcchhhhhhc-----CCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccC----hHHH
Confidence 34445668888 99999999999999999987652221 12223333331111 1111111111 1223
Q ss_pred HHHHHHHHcCCCCC--CceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCH
Q 025529 102 VGIIDEAMKKPSCQ--KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDD 154 (251)
Q Consensus 102 ~~ll~~~l~~~~~~--~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~ 154 (251)
.++++......... +-||||-.= +--...|..++++.--.|.+++|+-+..
T Consensus 105 R~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 105 REIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred HHHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEecC
Confidence 34443333332222 568998642 2222334455555445666666665543
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.84 E-value=0.00073 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.9
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++|+|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 4455999999999999998876
No 272
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.022 Score=53.48 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=35.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAA 78 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~~~ 78 (251)
+.-|++. ||||+|||.++..++...++.+|++. +++.+.+.+
T Consensus 701 ~~giLLy-----GppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735|consen 701 RTGILLY-----GPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred ccceEEE-----CCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence 5569999 99999999999999999999999984 676666543
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.83 E-value=0.00057 Score=54.03 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=21.3
Q ss_pred ecccCCCCCChhHHHHHHHHHh---C--Cceechh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY---C--LCHLATG 69 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~---~--~~~i~~~ 69 (251)
++|.|+||+|||+++..++... | +.++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3455999999999999886654 2 3455553
No 274
>PRK06620 hypothetical protein; Validated
Probab=96.83 E-value=0.0022 Score=52.29 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=25.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
..++|. ||+|||||++++.+++..+..+++
T Consensus 45 ~~l~l~-----Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIK-----GPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEE-----CCCCCCHHHHHHHHHhccCCEEcc
Confidence 458888 999999999999999988765554
No 275
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.82 E-value=0.0013 Score=59.16 Aligned_cols=34 Identities=38% Similarity=0.639 Sum_probs=28.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++..++|. ||||+|||++++.++..++.+++.+
T Consensus 215 ~~p~gVLL~-----GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 215 KPPKGVILY-----GPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 356678888 9999999999999999998766644
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.82 E-value=0.0016 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|. ||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~-----G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFT-----GNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 34578999 999999999998888766
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.82 E-value=0.0022 Score=50.67 Aligned_cols=40 Identities=33% Similarity=0.596 Sum_probs=30.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 74 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~ 74 (251)
..+..++|. |++|+|||.+|..++.++ .+.++++.+++..
T Consensus 45 ~~~~~l~l~-----G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILY-----GPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp SC--EEEEE-----ESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred ccCeEEEEE-----hhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 356789999 999999999999998765 3567788887765
No 278
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0012 Score=55.30 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=25.3
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++++ ||||.||||+|..+|.++|...-.+
T Consensus 55 vLl~-----GPPGlGKTTLA~IIA~Emgvn~k~t 83 (332)
T COG2255 55 VLLF-----GPPGLGKTTLAHIIANELGVNLKIT 83 (332)
T ss_pred EEee-----CCCCCcHHHHHHHHHHHhcCCeEec
Confidence 7888 9999999999999999998765443
No 279
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.00037 Score=58.17 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=36.0
Q ss_pred CCcccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
|||+-+-.+.+....--.+.+.......-.++-.+.|+ |+.||||||+.+.|+-.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALI-----GPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEE-----CCCCCCHHHHHHHHHhh
Confidence 77777766665532110012333333344567788888 99999999999999864
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.0013 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
|..|+++ ||+|+||||.+-.||.++
T Consensus 1 p~vi~lv-----GptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALV-----GPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEE-----CCCCCchHhHHHHHHHHH
Confidence 4567888 999999999999999888
No 281
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.79 E-value=0.00084 Score=62.70 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=24.0
Q ss_pred cCCCCCChhHHHHHHHHHhCCceech
Q 025529 43 AGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 43 ~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+||||.||||+|+.+|+.-|+.++.+
T Consensus 332 ~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 332 CGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ecCCCCChhHHHHHHHHhcCceEEEe
Confidence 59999999999999999999988765
No 282
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0013 Score=55.93 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
...+|+++ ||.|||||-+|+-||+.+++|+--+|.
T Consensus 96 ~KSNILLi-----GPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 96 SKSNILLI-----GPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred eeccEEEE-----CCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 34579999 999999999999999999999865553
No 283
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.79 E-value=0.00087 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHHHHh
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~ 61 (251)
|++|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 35566999999999999998876
No 284
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.78 E-value=0.0025 Score=55.33 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
.+..++|. ||||+||||+++.+++.++..+.
T Consensus 50 ~~~~~ll~-----GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 50 ALDHVLLY-----GPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCcEEEE-----CCCCccHHHHHHHHHHHhCCCeE
Confidence 44568888 99999999999999999987543
No 285
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.78 E-value=0.0012 Score=50.08 Aligned_cols=22 Identities=50% Similarity=0.884 Sum_probs=19.7
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+|.++ |+.|||||||++.|...
T Consensus 3 rimli-----G~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLI-----GPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEE-----CCCCCCHHHHHHHHcCC
Confidence 68888 99999999999999664
No 286
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.78 E-value=0.0034 Score=52.07 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=39.2
Q ss_pred HHHHHHHhhccC----C-CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHH
Q 025529 18 MTELLRRMKCAS----K-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAA 75 (251)
Q Consensus 18 ~~~~~~~~~~~~----~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~ 75 (251)
.-.++-+|...| . -|.+++|. ||||+|||-+|+.|+.+.+++++.+. .++-++
T Consensus 132 kcrli~~yLenPe~Fg~WAPknVLFy-----GppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 132 KCRLIMEYLENPERFGDWAPKNVLFY-----GPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred HHHHHHHHhhChHHhcccCcceeEEE-----CCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 334555665444 2 37789999 99999999999999999998887663 344443
No 287
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0062 Score=55.29 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=31.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+-|.-+++. ||||+|||-+|+.+|-+-|++++..
T Consensus 334 GKLPKGVLLv-----GPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 334 GKLPKGVLLV-----GPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CcCCCceEEe-----CCCCCchhHHHHHhhcccCCCeEec
Confidence 3557779999 9999999999999999999998876
No 288
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.74 E-value=0.0012 Score=42.58 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+|. |+.||||||+..++.--+
T Consensus 25 ~tli~-----G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLIT-----GPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 56677 999999999998875543
No 289
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.74 E-value=0.0029 Score=52.50 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+++........+..+|=|. ||||+||||+...|...|
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiT-----G~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGIT-----GPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEE-----E-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEee-----CCCCCcHHHHHHHHHHHH
Confidence 344555554333455555555 999999999999999888
No 290
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.014 Score=49.28 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~ 74 (251)
.+..++|. ||+|+|||.++..++... | +.++++.+++..
T Consensus 105 ~~~nlll~-----Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLF-----GPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEE-----ecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 45579999 999999999999998654 4 556677777655
No 291
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0087 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.-+++. ||.|+||+|+.+.|-++++
T Consensus 38 ~~ivl~-----gpsg~gk~tll~~l~ee~~ 62 (231)
T KOG0707|consen 38 KPIVLS-----GPSGVGKSTLLKRLREELG 62 (231)
T ss_pred ceEEEe-----CCCCcchhHHHHHHHHHcC
Confidence 347777 9999999999999999997
No 292
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.72 E-value=0.0016 Score=53.18 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
++.+..++|. |+||+||||+|+.|+. ...+++.|.
T Consensus 9 ~~~~~~~liy-----G~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIY-----GKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCCCcEEEEE-----CCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 3446778888 9999999999999963 244555544
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.72 E-value=0.005 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..+++. |++|+||||++..|+..+
T Consensus 94 ~p~vI~lv-----G~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLV-----GLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 46678888 999999999999999877
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0036 Score=52.90 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+.+++++........+.+|=|. |+||+||||+...|..+|
T Consensus 34 ~~~a~~ll~~l~p~tG~a~viGIT-----G~PGaGKSTli~~L~~~l 75 (323)
T COG1703 34 RALARELLRALYPRTGNAHVIGIT-----GVPGAGKSTLIEALGREL 75 (323)
T ss_pred hhHHHHHHHHHhhcCCCCcEEEec-----CCCCCchHHHHHHHHHHH
Confidence 344567777766444455555555 999999999999999888
No 295
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.022 Score=53.93 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhhc---------cC-CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHH
Q 025529 15 VDLMTELLRRMKC---------AS-KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRA 74 (251)
Q Consensus 15 ~~~~~~~~~~~~~---------~~-~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~ 74 (251)
++++.++.+-+.+ .+ +++.-|++. ||||+|||-+|++.|-++.+.++++. +|+.-
T Consensus 678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLY-----GPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLY-----GPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhccccccceeEEE-----CCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 3456666665532 22 446679999 99999999999999999999999884 45443
No 296
>CHL00176 ftsH cell division protein; Validated
Probab=96.69 E-value=0.0019 Score=60.84 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..+..+++. ||||+|||++++.++...+.+++.++
T Consensus 214 ~~p~gVLL~-----GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 214 KIPKGVLLV-----GPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 346678999 99999999999999999998877653
No 297
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0032 Score=58.90 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhhc----cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC--ceechhHH
Q 025529 15 VDLMTELLRRMKC----ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL--CHLATGDM 71 (251)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~--~~i~~~~l 71 (251)
+|++++++..+.. ....++.+.|. ||||.|||++++.+|+.+|- ..++++-+
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~-----GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFV-----GPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEe-----CCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 4566655555542 23578889999 99999999999999999974 45566543
No 298
>PHA03138 thymidine kinase; Provisional
Probab=96.66 E-value=0.046 Score=47.29 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.+|-|. |+.|+||||+++.+.+.+
T Consensus 12 ~~riYle-----G~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLD-----GAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEE-----CCCCcCHHhHHHHHHHhh
Confidence 3456666 999999999998776654
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.65 E-value=0.002 Score=57.86 Aligned_cols=33 Identities=36% Similarity=0.407 Sum_probs=27.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
....++|. ||||+||||+++.+++..+..++..
T Consensus 35 ~~~~ilL~-----GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILW-----GPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 44568888 9999999999999999987666544
No 300
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0018 Score=52.23 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=23.1
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..-.++-.++|+ ||+||||||+.+.|.-
T Consensus 23 l~v~~Gevv~ii-----GpSGSGKSTlLRclN~ 50 (240)
T COG1126 23 LSVEKGEVVVII-----GPSGSGKSTLLRCLNG 50 (240)
T ss_pred eeEcCCCEEEEE-----CCCCCCHHHHHHHHHC
Confidence 334577788999 9999999999999854
No 301
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.65 E-value=0.0017 Score=66.72 Aligned_cols=46 Identities=15% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHH
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLR 73 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~ 73 (251)
.+...+.. +|.-|+++ ||||+|||.+|++||...+++++.+ .+++.
T Consensus 1621 ~slrLGl~--pPKGILLi-----GPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1621 FSLRLALS--PSRGILVI-----GSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred HHHHcCCC--CCCceEEE-----CCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 34444433 45569999 9999999999999999999887755 45553
No 302
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.63 E-value=0.0025 Score=50.02 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++.+.|. |++||||||+++.|...+.
T Consensus 5 ~~~ii~iv-----G~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIA-----AWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEE-----CCCCChHHHHHHHHHHHHh
Confidence 34456677 9999999999999987773
No 303
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0059 Score=52.10 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
+...++++ |+.|||||-|+-.||.+|+-..|+.|.
T Consensus 6 k~KVvvI~-----G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIM-----GATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEe-----cCCCCChhhhHHHHHHhCCceeecccc
Confidence 45678888 999999999999999999999998874
No 304
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0017 Score=52.74 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=32.9
Q ss_pred HHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 19 TELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+++++.+...-.++..-+++ ||.||||||++..|+-+-++
T Consensus 17 keILkgvnL~v~~GEvhaiM-----GPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIM-----GPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred hhhhcCcceeEcCCcEEEEE-----CCCCCCHHHHHHHHhCCCCc
Confidence 56777777777788899999 99999999999999755433
No 305
>PRK13695 putative NTPase; Provisional
Probab=96.60 E-value=0.0022 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
|++++. |++||||||+++.++..+
T Consensus 1 ~~i~lt-----G~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGIT-----GPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 456677 999999999999987665
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.60 E-value=0.0014 Score=50.97 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
...++-+|+|. ||+||||||+.+.++.-.
T Consensus 25 ~v~~Ge~iait-----GPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAIT-----GPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEe-----CCCCccHHHHHHHHHhcc
Confidence 34577789999 999999999999998854
No 307
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.59 E-value=0.0032 Score=49.42 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHhhc-cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 19 TELLRRMKC-ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 19 ~~~~~~~~~-~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+++.+...+ ....+..+++. |++|+|||++.+.+.+.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~-----G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLT-----GESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHTTGGTSS-----EEE------B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 334444432 34567788888 999999999999887776
No 308
>PHA03133 thymidine kinase; Provisional
Probab=96.59 E-value=0.27 Score=42.88 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.0
Q ss_pred CcCEEEEEecCHHHHHHHHhcCc
Q 025529 143 KVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 143 ~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.-+-+|.++++.++-.+|+.+|.
T Consensus 193 pG~NiVl~~L~~~E~~~RL~~R~ 215 (368)
T PHA03133 193 PGTNLVLGALPEAAHAERLAQRQ 215 (368)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcC
Confidence 34578899999999999999984
No 309
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.59 E-value=0.003 Score=54.00 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=28.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
++.|+|. ||.|||||.+|-.||++. ...||.|.+
T Consensus 4 ~~ii~I~-----GpTasGKS~LAl~LA~~~-~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIF-----GPTAVGKSNILFHFPKGK-AEIINVDSI 37 (300)
T ss_pred CcEEEEE-----CCCccCHHHHHHHHHHhC-CcEEeccHH
Confidence 3467777 999999999999999994 588999864
No 310
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.58 E-value=0.0025 Score=45.91 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
++..++|. ||+||||||+++.+.
T Consensus 14 ~ge~v~I~-----GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLIT-----GDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEE-----cCCCCCHHHHHHHhh
Confidence 45678888 999999999999987
No 311
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.58 E-value=0.0039 Score=60.26 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++..++|+ ||||+||||+++.+++.++.+++..
T Consensus 347 ~~g~~i~l~-----GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 347 IKGPILCLV-----GPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456678889 9999999999999999998776533
No 312
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.58 E-value=0.0038 Score=56.69 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=26.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
.+....++. ||+||||||..+.|++.+|+.++.
T Consensus 108 l~~~iLLlt-----GPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 108 LGSRILLLT-----GPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CCceEEEEe-----CCCCCCchhHHHHHHHhhCceeee
Confidence 344455556 999999999999999999987654
No 313
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.55 E-value=0.0021 Score=58.79 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=25.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+|..++|. ||||+|||++++.+++.++..
T Consensus 215 ~p~GILLy-----GPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLY-----GPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEE-----CCCCCcHHHHHHHHHHhhccc
Confidence 45678899 999999999999999998543
No 314
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.55 E-value=0.0025 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|+++ |++||||||+.+.|....
T Consensus 1 kI~V~-----G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVL-----GDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEE-----CSTTSSHHHHHHHHHHSS
T ss_pred CEEEE-----CcCCCCHHHHHHHHhcCC
Confidence 46777 999999999999998753
No 315
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.051 Score=51.14 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++.+.+.+.+ ...+.+..++|. |++|+||||+++.|++.++.
T Consensus 23 ~vv~~L~~al-~~gRLpHA~LFt-----GP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 23 HVVRALTHAL-EQQRLHHAYLFT-----GTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHH-HhCCCceEEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence 3444344333 345556778899 99999999999999999976
No 316
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0044 Score=54.65 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++-+..++|. ||+|+||||+++.+++.++.
T Consensus 35 ~~~~h~~L~~-----Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 35 GRIHHAWLLS-----GTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCCeEEEEe-----cCCCCCHHHHHHHHHHHhcC
Confidence 3445667899 99999999999999999864
No 317
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0047 Score=56.01 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.3
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
++-+..++|. ||+|+||||+|+.|++.++..
T Consensus 37 ~ri~ha~Lf~-----GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 37 GKIGHAYIFF-----GPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHHhcCcc
Confidence 3445668999 999999999999999998753
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=96.54 E-value=0.0087 Score=49.26 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~ 69 (251)
..+.+.+. ||||+|||++++.++..+ ...++++.
T Consensus 38 ~~~~l~l~-----G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIW-----GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34567888 999999999999999875 44555553
No 319
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.002 Score=60.97 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=31.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+.|.-+++. ||||+|||-+|+++|-+=|+|++++.
T Consensus 341 AKiPkGvLL~-----GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 341 AKIPKGVLLV-----GPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred CcCcCceEEE-----CCCCCcHHHHHHHHhcccCCceeeec
Confidence 3456668888 99999999999999999999999874
No 320
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.0025 Score=61.42 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=29.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..+..++|. ||||+|||++++.++..++.+++.+.
T Consensus 485 ~~~~giLL~-----GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 485 RPPKGVLLF-----GPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 345568889 99999999999999999988777653
No 321
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.51 E-value=0.0021 Score=44.56 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=23.2
Q ss_pred ecccCCCCCChhHHHHHHHHHh---CCceechh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY---CLCHLATG 69 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~---~~~~i~~~ 69 (251)
++++|..|+||||++..|+..+ |...+-.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4455999999999999999887 55554444
No 322
>PLN03025 replication factor C subunit; Provisional
Probab=96.51 E-value=0.005 Score=53.27 Aligned_cols=24 Identities=46% Similarity=0.732 Sum_probs=21.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.++|. ||||+||||+++.+++.+
T Consensus 35 ~~lll~-----Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILS-----GPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 357888 999999999999999987
No 323
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.51 E-value=0.0028 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+..+++. |++||||||+++.+++.+.
T Consensus 43 ~~~~~l~-----G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILIT-----GEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEE-----cCCCCCHHHHHHHHHHhcC
Confidence 4467888 9999999999999999875
No 324
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.50 E-value=0.0033 Score=48.06 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=26.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
+.-++|. |++|+||||++..|.++ |+.+++-|
T Consensus 14 g~gvLi~-----G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLIT-----GPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEE-----cCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 4567888 99999999999999886 77776654
No 325
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.49 E-value=0.0061 Score=50.39 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~ 70 (251)
.+..+++. ||+|+|||++++.++.... +.+++.+.
T Consensus 44 ~~~~l~l~-----Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLW-----SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34578888 9999999999999988763 45666654
No 326
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.49 E-value=0.0044 Score=53.18 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=29.8
Q ss_pred HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+++++.+.....++..+.|. |++||||||++..|+..+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~-----G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGIT-----GTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 344555555445567788888 999999999999988865
No 327
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.48 E-value=0.0021 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.5
Q ss_pred cccCCCCCChhHHHHHHHHHh
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~ 61 (251)
.|+|++||||||++..|...+
T Consensus 5 ~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 5 GFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 344999999999999999887
No 328
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.48 E-value=0.0051 Score=52.99 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~ 65 (251)
..+..+++. ||||+||||+++.+++.++..+
T Consensus 41 ~~~~~lll~-----G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 41 RIPNMLLHS-----PSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCCeEEEee-----CcCCCCHHHHHHHHHHHhCccc
Confidence 344556668 9999999999999999886543
No 329
>PHA02624 large T antigen; Provisional
Probab=96.46 E-value=0.0062 Score=56.46 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 22 LRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 22 ~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
...+.....+...++|. |||||||||++..|.+.+|-..+++.
T Consensus 421 lk~~l~giPKk~~il~~-----GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 421 LKLIVENVPKRRYWLFK-----GPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred HHHHHhcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 33333333456689999 99999999999999999955566653
No 330
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0028 Score=58.21 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=29.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.++..++|. ||||+|||.+|+.++..++.++++++
T Consensus 274 ~~~~giLl~-----GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 274 RPPKGVLLY-----GPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred CCCCeeEEE-----CCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 345578888 99999999999999998887777664
No 331
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.45 E-value=0.0034 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
|.++.+. |++||||||+.+.+...+
T Consensus 1 ~~~i~i~-----G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVA-----GPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence 3456667 999999999999998875
No 332
>PRK04296 thymidine kinase; Provisional
Probab=96.45 E-value=0.0019 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.0
Q ss_pred cccCCCCCChhHHHHHHHHHh
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~ 61 (251)
+++|+||+||||++..++.++
T Consensus 6 litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHH
Confidence 344999999999999988877
No 333
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.0057 Score=56.14 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.++-+..++|. ||+|+||||+|+.|++.++..
T Consensus 39 ~~ri~~a~Lf~-----Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 39 NDRLAGGYLLT-----GIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cCCCCceEEEE-----CCCCCCHHHHHHHHHHHhcCc
Confidence 34556789999 999999999999999999764
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.45 E-value=0.0062 Score=49.85 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.++..+++. |+||||||+++..++.
T Consensus 17 p~gs~~li~-----G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 17 PKGSVVLIS-----GPPGSGKTTLALQFLY 41 (226)
T ss_dssp ETTSEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEE-----eCCCCCcHHHHHHHHH
Confidence 456778888 9999999999987653
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.44 E-value=0.0057 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.1
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. ||||+||||+++.+++.+
T Consensus 38 ~lll~-----Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQ-----GPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 57788 999999999999999987
No 336
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.44 E-value=0.0058 Score=59.21 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+++.++|. ||||+|||++++.|++.++.+++..
T Consensus 346 ~~~~lll~-----GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLV-----GPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 45578888 9999999999999999998766533
No 337
>PRK06921 hypothetical protein; Provisional
Probab=96.44 E-value=0.05 Score=45.85 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh----CC--ceechhHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----CL--CHLATGDMLR 73 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~~--~~i~~~~li~ 73 (251)
....++|. |++|+|||+++..++..+ |. .+++..+++.
T Consensus 116 ~~~~l~l~-----G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALL-----GQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEE-----CCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 45678999 999999999999998865 33 3445545443
No 338
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.44 E-value=0.017 Score=46.50 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=26.7
Q ss_pred HHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 211 AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 211 ~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+|++....+....++.+.+--++-+.+-|+-++.|+..|.
T Consensus 208 Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID 247 (273)
T KOG1534|consen 208 KFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYID 247 (273)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHH
Confidence 4555555566666666666666777777888888776653
No 339
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0061 Score=57.20 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.+.+.+.+. .++.+..++|. ||+|+||||+|+.||+.++..
T Consensus 23 vv~~L~~aI~-~grl~HAyLF~-----GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 23 VSRALSSALE-RGRLHHAYLFT-----GTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCC
Confidence 3443444443 34456778999 999999999999999999753
No 340
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.012 Score=49.13 Aligned_cols=45 Identities=24% Similarity=0.548 Sum_probs=35.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHHHHHHcCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKT 80 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~~~~~~~~ 80 (251)
+|.-+++. ||||+|||-+|+..+.+.+..+|.+ ++|+.+.+..+.
T Consensus 210 ppkgvlly-----gppgtgktl~aravanrtdacfirvigselvqkyvgega 256 (435)
T KOG0729|consen 210 PPKGVLLY-----GPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA 256 (435)
T ss_pred CCCceEEe-----CCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH
Confidence 45568888 9999999999999999998777755 566666555443
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.40 E-value=0.004 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.++ ||+||||||++..|+..+
T Consensus 113 ~~~vi~lv-----GpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVV-----GVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 46677788 999999999999999887
No 342
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.39 E-value=0.0034 Score=51.28 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.4
Q ss_pred HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+...-.++-.++|+ ||+||||||+...+.-
T Consensus 23 ~v~l~i~~Ge~vaI~-----GpSGSGKSTLLniig~ 53 (226)
T COG1136 23 DVNLEIEAGEFVAIV-----GPSGSGKSTLLNLLGG 53 (226)
T ss_pred cceEEEcCCCEEEEE-----CCCCCCHHHHHHHHhc
Confidence 333344577788999 9999999999998864
No 343
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0055 Score=58.93 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=25.9
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++|. ||||+|||++|+.||+.++.+++..
T Consensus 490 ~~Lf~-----GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 490 SFLFA-----GPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 57888 9999999999999999998766543
No 344
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.39 E-value=0.0024 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--Cceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~ 69 (251)
++..+.+. |+||||||++|..++... | ..++++.
T Consensus 11 ~g~i~~i~-----G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIY-----GPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46667777 999999999999988654 3 4455553
No 345
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0065 Score=55.44 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=26.8
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
..++-+..++|. ||+|+||||+|+.||+.++.
T Consensus 30 ~~~ri~ha~Lf~-----Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 30 TLNKIPQSILLV-----GASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HcCCCCceEEEE-----CCCCccHHHHHHHHHHHHcC
Confidence 344556679999 99999999999999998754
No 346
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.37 E-value=0.0025 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.+. |+|||||||+|..++...
T Consensus 17 ~~g~i~~i~-----G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 17 ERGTVTQVY-----GPPGTGKTNIAIQLAVET 43 (218)
T ss_pred cCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 346667777 999999999999998765
No 347
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.047 Score=53.09 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.0
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.+.+.+.+ ..++.+.-++|. |++|+||||+++.|++.+++.
T Consensus 23 v~~~L~~~i-~~~ri~Ha~Lf~-----Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 23 VTEPLSTAL-DSGRINHAYLFS-----GPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HHHHHHHHH-HhCCCCceEEEE-----CCCCCCHHHHHHHHHHHhCcc
Confidence 344333333 344556678999 999999999999999999753
No 348
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0028 Score=54.89 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=33.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh--HHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAV 76 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~--~li~~~~ 76 (251)
+++..|+++ ||||+|||-+|++++++-|..+++++ .++.++.
T Consensus 125 ~p~kGiLL~-----GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 125 RPPKGILLY-----GPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred cCCccceec-----CCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 356679999 99999999999999999998877663 4544444
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.36 E-value=0.0046 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+..++|. |++||||||+.+.|...+
T Consensus 24 ~g~~i~I~-----G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILIS-----GGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence 45678999 999999999999998765
No 350
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.0033 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.-.++-.++|+ ||+||||||+.+.+|=-.
T Consensus 25 ~i~~Gef~vll-----GPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 25 DIEDGEFVVLL-----GPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 34577789999 999999999999998543
No 351
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.015 Score=48.28 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=28.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 74 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~ 74 (251)
..+++. |++|+|||+++..++..+ | +.++++.+++..
T Consensus 100 ~~~~l~-----G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFS-----GKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEE-----CCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 357888 999999999999999988 3 345566666543
No 352
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.36 E-value=0.0035 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.+. |+.+|||||+++.|.+.+
T Consensus 2 vv~Vv-----G~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVV-----GPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45556 999999999999998877
No 353
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.36 E-value=0.07 Score=48.47 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhccCC-CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----C--CceechhHHHHH
Q 025529 15 VDLMTELLRRMKCASK-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA 74 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~--~~~i~~~~li~~ 74 (251)
......++..+...+. ....++|. |++|+|||++++.++..+ + +.+++..+++..
T Consensus 130 n~~a~~~~~~~~~~~~~~~~~l~l~-----G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 130 NRLAHAAALAVAENPGKAYNPLFIY-----GGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred cHHHHHHHHHHHhCcCccCCeEEEE-----CCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 3333344444433332 22347788 999999999999999886 2 346677666544
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.35 E-value=0.0044 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++++ |++|+||||++..|+..+
T Consensus 71 ~~~vi~l~-----G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFV-----GVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 45667777 999999999999998877
No 355
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.34 E-value=0.0026 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.....+.|+ |+|||||||+...|...+
T Consensus 102 ~~~~~v~l~-----G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLV-----SSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 456667777 999999999998888775
No 356
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0049 Score=49.10 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=33.4
Q ss_pred CcccccccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 2 ASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+||-..+|+-.+ +.+...+...-.++-..++. ||+||||||+.+.+|-
T Consensus 6 ~~~~sl~y~g~~-----~~~le~vsL~ia~ge~vv~l-----GpSGcGKTTLLnl~AG 53 (259)
T COG4525 6 VSHLSLSYEGKP-----RSALEDVSLTIASGELVVVL-----GPSGCGKTTLLNLIAG 53 (259)
T ss_pred hhheEEecCCcc-----hhhhhccceeecCCCEEEEE-----cCCCccHHHHHHHHhc
Confidence 445455555544 44455555444567788899 9999999999998875
No 357
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.33 E-value=0.0026 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.-.+++. ||+||||||+.+.|...+
T Consensus 133 ~~glilI~-----GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFIT-----GATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 34567788 999999999999998876
No 358
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.33 E-value=0.014 Score=52.89 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh-------CCceechhHHHHHH
Q 025529 20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAA 75 (251)
Q Consensus 20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-------~~~~i~~~~li~~~ 75 (251)
.....+...+.+...++|. |++|+|||++++.++..+ .+.+++..+++...
T Consensus 118 ~~~~~~~~~~~~~n~l~ly-----G~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIY-----GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred HHHHHHHhCcCCCCeEEEE-----cCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 3444443334333348888 999999999999998875 24566777765554
No 359
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.0074 Score=53.91 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=27.4
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
..++-+.-++|. ||||+||||+|..+++.+...
T Consensus 33 ~~~~~~ha~lf~-----Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 33 RMGRVGHGYIFS-----GLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HhCCcceeEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence 344556678999 999999999999999999653
No 360
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.028 Score=48.71 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=24.6
Q ss_pred ecccCCCCCChhHHHHHHHHHh---CCceechh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY---CLCHLATG 69 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~---~~~~i~~~ 69 (251)
||++|-+|+||||++-.|.+.+ |++.++.|
T Consensus 53 vw~tglsgagkttis~ale~~l~~~gipcy~ld 85 (627)
T KOG4238|consen 53 VWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD 85 (627)
T ss_pred EEeeccCCCCcceeehHHHHHHHhcCCcccccC
Confidence 4666999999999999998876 77777664
No 361
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.31 E-value=0.0061 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=15.7
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++. ||||+||||+...+...+
T Consensus 19 ~~~i~-----GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQ-----GPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE------STTSSHHHHHHHHHHHH
T ss_pred CEEEE-----CCCCCChHHHHHHHHHHh
Confidence 46666 999999997666665554
No 362
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0044 Score=53.26 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
-|.+|+++ ||.|.|||-+|+.||+--|.||+-+
T Consensus 49 ~PKNILMI-----GpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMI-----GPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEE-----CCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 47789999 9999999999999999888888754
No 363
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0032 Score=51.62 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+++.+.-.-.++-.+-|+ |++||||||+++.|+-..
T Consensus 22 ~l~~VS~~i~~Ge~lgiv-----GeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 22 ALNNVSLEIERGETLGIV-----GESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhcceeEEecCCCEEEEE-----cCCCCCHHHHHHHHhccc
Confidence 344443344577788888 999999999999997643
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.30 E-value=0.043 Score=49.42 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=25.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD 70 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~ 70 (251)
+..++|. ||+|+||||++..|+..+- +.+++.|.
T Consensus 221 ~~~i~~v-----GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALV-----GPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4577888 9999999999888876542 34556654
No 365
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0069 Score=55.66 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=26.5
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
...+-+..++|. ||||+||||+++.|++.+..
T Consensus 31 ~~~~l~ha~Lf~-----GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 31 RQGRLGHAYLFS-----GPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhc
Confidence 344556678999 99999999999999999853
No 366
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.30 E-value=0.0052 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+|-+. ||||||||++...+.+.+
T Consensus 14 ~~i~v~-----Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 14 LRIGVG-----GPPGSGKTALIEKTLRAL 37 (202)
T ss_pred EEEEec-----CCCCcCHHHHHHHHHHHH
Confidence 456666 999999999877766555
No 367
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.29 E-value=0.0046 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=27.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+...++. |+||+|||++++.+++.++.+++.+
T Consensus 42 ~~~~vll~-----G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 42 AGGHVLLE-----GPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred cCCCEEEE-----CCCCccHHHHHHHHHHHhCCCeEEE
Confidence 34458899 9999999999999999998765544
No 368
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.004 Score=60.04 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=28.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++..++|. ||||+||||+++.++..++.+++.+
T Consensus 210 ~~~~giLL~-----GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 210 EPPKGVLLY-----GPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCCceEEEE-----CCCCCChHHHHHHHHHHhCCeEEEE
Confidence 345668889 9999999999999999998776644
No 369
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0043 Score=51.11 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=25.8
Q ss_pred hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+...-.++-++.++ ||+||||||+-+.++--.
T Consensus 22 i~L~v~~GEfvsil-----GpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 22 INLSVEKGEFVAIL-----GPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ceeEECCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 33444678889999 999999999999997644
No 370
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.28 E-value=0.011 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..+++. |+||||||++|..++-.
T Consensus 19 ~~gs~~lI~-----G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 19 PERNVVLLS-----GGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCeEEEEE-----cCCCCCHHHHHHHHHHH
Confidence 357778888 99999999999876543
No 371
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.28 E-value=0.0027 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+|..|.|. |.+||||||++..|.+++.
T Consensus 4 ~~~~i~i~-----G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFC-----GYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEE-----eCCCCCHHHHHHHHHHHHh
Confidence 34455555 9999999999999998875
No 372
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.27 E-value=0.0048 Score=55.45 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..+++. ||||+|||++|+.|+..++
T Consensus 193 ~~~~iil~-----GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQ-----GPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEE-----CCCCCCHHHHHHHHHHHhc
Confidence 45578889 9999999999999999874
No 373
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.27 E-value=0.12 Score=46.36 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHhhccCCC-CeEEEEEeecccCCCCCChhHHHHHHHHHh-----C--CceechhHHHHH
Q 025529 13 PSVDLMTELLRRMKCASKP-DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRA 74 (251)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~--~~~i~~~~li~~ 74 (251)
+...+...+...+...+.. ...++|. |++|+|||++++.++..+ + +.+++..+++..
T Consensus 116 ~~n~~a~~~~~~~~~~~~~~~n~l~l~-----G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 116 KSNRLAHAAALAVAENPGKAYNPLFIY-----GGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CcHHHHHHHHHHHHhCcCccCCeEEEE-----CCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 3344444455555433322 2347788 999999999999998765 2 446677666544
No 374
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.27 E-value=0.0072 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.+.+.+. ||||+||||+++.|++.+
T Consensus 102 ~~~IL~Lv-----GPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLL-----GPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEe-----cCCCCCchHHHHHHHHHH
Confidence 45567777 999999999999999877
No 375
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=96.26 E-value=0.17 Score=42.70 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcC-CchHHHHHHH---HHcCCCcCHH---HH----------HHH
Q 025529 44 GPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAK-TPLGIKAKEA---MDKGELVSDD---LV----------VGI 104 (251)
Q Consensus 44 G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~-~~~~~~i~~~---l~~~~~~~~~---~~----------~~l 104 (251)
|+.|.||||+++.|++... -.++...+-|..+-.-. +..-+.+.+. ..+|+....+ .+ ...
T Consensus 1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP~~~ 80 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEALPAGDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATPYLA 80 (281)
T ss_dssp SSTTSSHHHHHHHHHHCCTSSCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHccCCCCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcchHHH
Confidence 8999999999999999883 44566655554443332 3333444322 2233322111 00 112
Q ss_pred HHHHHcCC-----------CCCCceEEeCCCCCHHH-------------HHHHHHHHHhcC-C-CcCEEEEEecCHHHHH
Q 025529 105 IDEAMKKP-----------SCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQG-K-KVDKVLNFAIDDAVLE 158 (251)
Q Consensus 105 l~~~l~~~-----------~~~~~~Iidg~~~~~~~-------------~~~l~~~~~~~~-~-~~~~vI~L~~~~e~~~ 158 (251)
+...+... .....+|+|.+|....- ...|..++.... . .-+.+|.++++.++-.
T Consensus 81 ~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~ 160 (281)
T PF00693_consen 81 LHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHL 160 (281)
T ss_dssp HHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHH
T ss_pred HHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH
Confidence 23333321 11134678998754211 122223333332 1 2345778999999999
Q ss_pred HHHhcCc
Q 025529 159 ERITGRW 165 (251)
Q Consensus 159 ~Rl~~r~ 165 (251)
+|+..|.
T Consensus 161 rRl~~R~ 167 (281)
T PF00693_consen 161 RRLKARG 167 (281)
T ss_dssp HHHHHTS
T ss_pred HHHHHcC
Confidence 9999985
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=96.25 E-value=0.005 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..|+|. |++|+||||++..|+..+
T Consensus 139 ~~~vi~~~-----G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFV-----GVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 45677788 999999999888888766
No 377
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.24 E-value=0.0042 Score=54.13 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++-.+.+. ||+||||||+.+.+|--
T Consensus 29 ~~Gef~~lL-----GPSGcGKTTlLR~IAGf 54 (352)
T COG3842 29 KKGEFVTLL-----GPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 466788899 99999999999999853
No 378
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.24 E-value=0.0061 Score=50.91 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAA 75 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~ 75 (251)
..+|..|++. |..||||||++++|..++. -.+|+.|...++.
T Consensus 16 ~~~p~~ilVv-----GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 16 IQRPVIILVV-----GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred ccCCcEEEEE-----ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 4578889999 9999999999999988872 3567887666554
No 379
>PRK04328 hypothetical protein; Provisional
Probab=96.24 E-value=0.011 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..+++. |+||||||++|..+...
T Consensus 21 p~gs~ili~-----G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 21 PERNVVLLS-----GGPGTGKSIFSQQFLWN 46 (249)
T ss_pred cCCcEEEEE-----cCCCCCHHHHHHHHHHH
Confidence 356778888 99999999999887654
No 380
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0041 Score=54.30 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=27.9
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
-++++ ||||+|||-+|++++.+.+..|+++.
T Consensus 247 gvLm~-----GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 247 GVLMV-----GPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred eeeee-----CCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 47778 99999999999999999998888775
No 381
>PRK09183 transposase/IS protein; Provisional
Probab=96.22 E-value=0.007 Score=50.84 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=27.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDML 72 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li 72 (251)
..+..++|+ ||+|+|||+++..|+... | +.+++..+++
T Consensus 100 ~~~~~v~l~-----Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLL-----GPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEE-----eCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 356678899 999999999999996553 3 3345555554
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.22 E-value=0.0029 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+++. ||.||||||+.+.++-
T Consensus 26 ~~~~lt-----GpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILIT-----GSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEE-----CCCCCChHHHHHHHHH
Confidence 567777 9999999999999973
No 383
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.0091 Score=55.25 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+.+.+.+.+. ..+.+..++|. ||+|+||||+|+.|++.++.
T Consensus 24 ~v~~L~~~i~-~~rl~ha~Lf~-----Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 24 ALNSLVHALE-TQKVHHAYLFT-----GTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCC
Confidence 3343443332 33445568889 99999999999999998864
No 384
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.20 E-value=0.0039 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=20.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..++++ |+||+|||++++.|..-+
T Consensus 22 ~h~lLl~-----GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLI-----GPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEE-----S-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEE-----CCCCCCHHHHHHHHHHhC
Confidence 4579999 999999999999999876
No 385
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.003 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+.++ |+.||||||+.+.|+-.+
T Consensus 24 e~~~i~-----G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIF-----GASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 667777 999999999999997654
No 386
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.20 E-value=0.014 Score=48.09 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
++..+++. |++|+||||+|..++.
T Consensus 23 ~g~~~~i~-----G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 23 AGSLILIE-----GDESTGKSILSQRLAY 46 (230)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHH
Confidence 45578888 9999999999755443
No 387
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.19 E-value=0.0057 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.+++++ |++||||||++..|-..+
T Consensus 12 ~~fr~viI-----G~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVII-----GKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHhh
Confidence 56689999 999999999888887655
No 388
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.19 E-value=0.092 Score=49.19 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=29.3
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh-------CCceechhHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 76 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~-------~~~~i~~~~li~~~~ 76 (251)
.++|. |++|+|||.|++.++... .+.+++..+++....
T Consensus 316 pL~Ly-----G~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIY-----GESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEE-----CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 37888 999999999999998865 346777777665543
No 389
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.19 E-value=0.0043 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+++++ |++|+||||+...|..
T Consensus 1 ~V~ii-----G~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAII-----GRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEE-----ESTTSSHHHHHHHHHT
T ss_pred CEEEE-----CCCCCCHHHHHHHHhc
Confidence 46777 9999999999999975
No 390
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.18 E-value=0.0049 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+|+++ |++||||||+...|...
T Consensus 3 ~~~i~~~-----G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIV-----GRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 4578888 99999999999998643
No 391
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.0084 Score=58.04 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=26.9
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.++-+..++|. ||+|+||||+++.|++.++..
T Consensus 34 ~~rl~HAyLFt-----GPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 34 QQRLHHAYLFT-----GTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCeEEEEE-----CCCCCCHHHHHHHHHHhccCc
Confidence 34556667899 999999999999999999754
No 392
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.17 E-value=0.051 Score=46.78 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
.+..+.|. |++|+|||.++..++..+ |. .++.+.+++... +..+..+ .+...+
T Consensus 155 ~~~gl~L~-----G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l-----------k~~~~~~------~~~~~l 212 (306)
T PRK08939 155 KVKGLYLY-----GDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL-----------KNSISDG------SVKEKI 212 (306)
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH-----------HHHHhcC------cHHHHH
Confidence 45578899 999999999999999887 43 455776666542 2222211 111222
Q ss_pred HHHHcCCCCCCceEEeCCCCC---HHHH-HHHHHHHHhc--CCCcCEEEEEecCHHHHHHHHh
Q 025529 106 DEAMKKPSCQKGFILDGFPRT---EVQA-QKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~---~~~~-~~l~~~~~~~--~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
.......-+|||.+... .... ..|..++... ...| .+|-=..+.+++.+++.
T Consensus 213 ----~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 213 ----DAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA 270 (306)
T ss_pred ----HHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence 12223346788876432 1122 2333343221 2222 55556678888888775
No 393
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.015 Score=55.63 Aligned_cols=44 Identities=14% Similarity=0.359 Sum_probs=35.3
Q ss_pred CCCCe-EEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHH
Q 025529 29 SKPDK-RLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVA 77 (251)
Q Consensus 29 ~~~~~-~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~ 77 (251)
|.+|. .++|. ||.|+|||-+|+.||+.+. +..|++++++.++.-
T Consensus 517 p~rPigsFlF~-----GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 517 PNRPIGSFLFL-----GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred CCCCceEEEee-----CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 44443 67778 9999999999999999983 677889888877643
No 394
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.17 E-value=0.006 Score=58.37 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
+.+.++|. ||||+||||+++.+++..+..++.++.
T Consensus 51 ~~~slLL~-----GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 51 RVGSLILY-----GPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 34467888 999999999999999988766655543
No 395
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0097 Score=54.79 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
++.+.+.+.+. ..+-+..++|. ||+|+||||+|+.|++.++..
T Consensus 23 ~v~~~L~~~~~-~~~l~ha~Lf~-----Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 23 PVVRALSNALD-QQYLHHAYLFT-----GTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHHHHHHH-hCCCCeeEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence 44454444443 34456678999 999999999999999999753
No 396
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.17 E-value=0.0036 Score=54.76 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=22.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+.-.+++. ||+||||||+.+.|...+.
T Consensus 121 ~~g~ili~-----G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVT-----GPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEE-----CCCCCCHHHHHHHHHHhhC
Confidence 34467888 9999999999999887663
No 397
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.0048 Score=49.77 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=25.0
Q ss_pred hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.+.-.+...-+++ ||+||||||+.+.|....
T Consensus 26 i~l~i~~~~VTAlI-----GPSGcGKST~LR~lNRmn 57 (253)
T COG1117 26 INLDIPKNKVTALI-----GPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CceeccCCceEEEE-----CCCCcCHHHHHHHHHhhc
Confidence 33444566678899 999999999999997654
No 398
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.16 E-value=0.01 Score=50.28 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~ 65 (251)
+..+..+|. ||||+|||+.+.+++..+..+.
T Consensus 55 ~~lp~~LFy-----GPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 55 RILPHYLFY-----GPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred cCCceEEee-----CCCCCcHhHHHHHHHHHhcCcc
Confidence 567789999 9999999999999999986543
No 399
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.16 E-value=0.012 Score=51.15 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=30.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 74 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~~~li~~ 74 (251)
...++|. |++|+|||.++..++..+ .+.++++.+++..
T Consensus 183 ~~~Lll~-----G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFY-----GNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEE-----CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 4678999 999999999999999987 3456677776654
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.15 E-value=0.004 Score=46.57 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|+ |+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~-----G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIV-----GPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEE-----ESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEE-----ccCCCccccceeeecccc
Confidence 55677888 999999999999997765
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.14 E-value=0.0036 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.8
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++++|++||||||++..|+..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3444999999999999998886
No 402
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.14 E-value=0.0039 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.0
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
|.|+|.+||||||++..|...+
T Consensus 4 i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3444999999999999999988
No 403
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0045 Score=56.43 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=22.9
Q ss_pred CCCeEEE-EEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLI-LIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~-i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+|+.|+ ++ ||||+||||+.+.|..+|
T Consensus 66 ~PPPfIvavv-----GPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 66 LPPPFIVAVV-----GPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCCeEEEee-----cCCCCChhHHHHHHHHHH
Confidence 3555555 88 999999999999999988
No 404
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.13 E-value=0.0078 Score=52.54 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=25.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~ 68 (251)
.+..++|. ||||+|||.+|-.+++.+| +|+..+
T Consensus 49 aGr~iLia-----GppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 49 AGRAILIA-----GPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp TT-EEEEE-----E-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cCcEEEEe-----CCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 46778899 9999999999999999996 555544
No 405
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.13 E-value=0.0069 Score=52.63 Aligned_cols=25 Identities=40% Similarity=0.667 Sum_probs=21.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+.++++ ||||+||||+|+.|++--.
T Consensus 163 pSmIlW-----GppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 163 PSMILW-----GPPGTGKTTLARLIASTSK 187 (554)
T ss_pred CceEEe-----cCCCCchHHHHHHHHhhcC
Confidence 458899 9999999999999988654
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.12 E-value=0.0094 Score=57.43 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=26.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 71 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~l 71 (251)
.++|. ||+|+|||++|+.|++.++..++ +++++
T Consensus 486 ~~lf~-----Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 486 SFLFT-----GPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred eEEEE-----CCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 57888 99999999999999999976544 44444
No 407
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.12 E-value=0.0056 Score=49.57 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 25 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLV-----GPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999998754
No 408
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.014 Score=49.59 Aligned_cols=40 Identities=30% Similarity=0.560 Sum_probs=30.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 74 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~ 74 (251)
++|.-..++ ||||.|||-+|+.+++..|+.++ +.+.+..+
T Consensus 164 k~Pkg~ll~-----GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 164 KPPKGLLLY-----GPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred CCCceeEEe-----CCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 345556677 99999999999999999987655 44444433
No 409
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.10 E-value=0.0058 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLV-----GHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466778888 999999999999998754
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.10 E-value=0.0067 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..|+|. ||.|+||||++..|+..+
T Consensus 193 ~~~vi~~v-----GptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALV-----GPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 35578888 999999999999998766
No 411
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.10 E-value=0.006 Score=48.52 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 15 i~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALL-----GANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3466678888 999999999999997654
No 412
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.08 E-value=0.0062 Score=49.31 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++..+.++ |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLL-----GPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3567788899 999999999999998765
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.07 E-value=0.0061 Score=49.54 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 28 ~~G~~~~l~-----G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIV-----GPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEE-----cCCCCCHHHHHHHHhCCc
Confidence 466678888 999999999999998755
No 414
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.082 Score=43.93 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=31.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAK 79 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~ 79 (251)
|.-.++. ||||+|||-+++..+.+....+| ..++++.+.+..+
T Consensus 189 prgvlly-----gppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 189 PRGVLLY-----GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred CcceEEe-----CCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 4446677 99999999999999998855444 4456666655443
No 415
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.04 E-value=0.013 Score=47.37 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
....++.+.|. |++||||||+...+...++
T Consensus 18 ~~~~~~~i~~~-----G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFM-----SSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEE-----CCCCCCHHHHHHHHHHHHh
Confidence 34467788899 9999999999999988754
No 416
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.012 Score=54.52 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
++.+.+.+.+. .++.+..++|. ||+|+||||+|+.|++.++..
T Consensus 23 ~v~~~L~~~i~-~~~~~ha~Lf~-----Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 23 HVVRALTNALE-QQRLHHAYLFT-----GTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HHHHHHHHHHH-cCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhcCC
Confidence 34444444443 34456668899 999999999999999999653
No 417
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.03 E-value=0.0067 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |++||||||+.+.|...
T Consensus 12 ~~~~~v~i~-----G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILIL-----GLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEE-----ccCCCCHHHHHHHHhcC
Confidence 346789999 99999999999999753
No 418
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.03 E-value=0.0041 Score=50.73 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=24.3
Q ss_pred HHHHHHHhccHHHHHHHhhCCc----EEEEcCCCChhHHHHHHH
Q 025529 207 SRLEAFHKQTEPVIDYYSKKGI----VAQLHAEKPPQEVTSEVQ 246 (251)
Q Consensus 207 ~r~~~y~~~~~~~~~~~~~~~~----~~~id~~~~~eev~~~i~ 246 (251)
.++..|++..+.+....++.+. ++.++...+.-.+...|.
T Consensus 206 p~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~ID 249 (290)
T KOG1533|consen 206 PRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTID 249 (290)
T ss_pred hhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHH
Confidence 4677888888887777776553 234444444444555444
No 419
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.03 E-value=0.0068 Score=49.00 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 i~~G~~~~l~-----G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIV-----GPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 3466778888 999999999999998654
No 420
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0061 Score=49.31 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++ .++++ |+.||||||+.+.|+-.+
T Consensus 25 ~g-~~~i~-----G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLL-----GPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 46 78888 999999999999998654
No 421
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.02 E-value=0.0046 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+++. ||+||||||+.+.|...+
T Consensus 151 lilI~-----G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 151 LGLIC-----GETGSGKSTLAASIYQHC 173 (372)
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 46677 999999999999998776
No 422
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.018 Score=48.14 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=31.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~--~~~i~~~~li~~ 74 (251)
.+..++|. |+||+|||.++.+++.++ | +.++.+.+++.+
T Consensus 104 ~~~nl~l~-----G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLL-----GPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEE-----CCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 67789999 999999999999988776 3 346677777655
No 423
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.01 E-value=0.0068 Score=49.40 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALL-----GRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 567788888 999999999999997654
No 424
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.01 E-value=0.0067 Score=47.91 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.++ |+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIV-----GPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEE-----CCCCChHHHHHHHHHcCC
Confidence 456688888 999999999999998654
No 425
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.01 E-value=0.0062 Score=50.14 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=23.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.++++ |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLI-----GPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEE-----CCCCCCHHHHHHHHcCCC
Confidence 3467788888 999999999999997654
No 426
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0072 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLL-----GPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466678888 999999999999998654
No 427
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.0073 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIK-----GANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 456678888 999999999999998764
No 428
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.98 E-value=0.0072 Score=49.19 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.-.++-.++|+ |+.||||||+.+.|+-.+
T Consensus 24 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 24 NVYKGEIFGLL-----GHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 33566678888 999999999999998654
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.98 E-value=0.0072 Score=48.97 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 25 i~~G~~~~l~-----G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLT-----GPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3466788888 999999999999997654
No 430
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0072 Score=49.78 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAII-----GPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466678888 999999999999998654
No 431
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.97 E-value=0.0073 Score=49.19 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++..+.|+ |+.||||||+.+.|+-.+
T Consensus 28 i~~G~~~~i~-----G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIV-----GSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3567778888 999999999999998654
No 432
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0014 Score=57.47 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=24.6
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..-.++-.++|+ ||+||||||+.+.|+-.+
T Consensus 27 l~i~~Ge~~~ll-----GpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 27 LTIKQGTMVTLL-----GPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEcCCCEEEEE-----CCCCCcHHHHHHHHHCCC
Confidence 333567788999 999999999999998654
No 433
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.97 E-value=0.018 Score=47.43 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..+++. |+|||||||++..++..
T Consensus 23 ~~g~~~~i~-----G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 23 PFPSLILIE-----GDHGTGKSVLSQQFVYG 48 (234)
T ss_pred cCCcEEEEE-----CCCCCChHHHHHHHHHH
Confidence 356677888 99999999999998654
No 434
>PRK13768 GTPase; Provisional
Probab=95.97 E-value=0.0076 Score=50.42 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.5
Q ss_pred ccCCCCCChhHHHHHHHHHh
Q 025529 42 LAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~ 61 (251)
|+|++||||||++..++..+
T Consensus 7 v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 7 FLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EECCCCccHHHHHHHHHHHH
Confidence 33999999999999998777
No 435
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.96 E-value=0.0051 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. |++||||||+.+.+...+
T Consensus 82 lilis-----G~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVT-----GPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEE-----CCCCCcHHHHHHHHHhhh
Confidence 57788 999999999999887665
No 436
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.015 Score=54.27 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++.+..++|. ||+|+||||+|+.|++.+..
T Consensus 35 ~rl~hA~Lf~-----GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 35 NKLTHAYIFS-----GPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCceEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence 4445668899 99999999999999999854
No 437
>PRK06851 hypothetical protein; Provisional
Probab=95.95 E-value=0.0052 Score=53.97 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=20.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
...+++. |+||+||||+.+.+.+.+
T Consensus 30 ~~~~il~-----G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 30 NRIFILK-----GGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3456777 999999999999988777
No 438
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0081 Score=47.33 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~-----G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALL-----GPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466678888 999999999999997654
No 439
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0077 Score=48.78 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=23.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALL-----GPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3466778888 999999999999998654
No 440
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.95 E-value=0.0077 Score=48.72 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~-----G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVII-----GPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466778888 999999999999998654
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0078 Score=49.05 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLL-----GPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466778888 999999999999998654
No 442
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.0082 Score=46.78 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=24.2
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.-.++-.+++. |+.||||||+.+.|+-.+
T Consensus 23 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLIT-----GPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 33567788888 999999999999997654
No 443
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.0081 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|+ ||+|+||||++..|+..+
T Consensus 136 ~g~ii~lv-----GptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALM-----GPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 46678888 999999999999998764
No 444
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=95.93 E-value=0.0053 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.2
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++|+|++||||||++..|+.++
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L 25 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNL 25 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHH
Confidence 4455999999999999999888
No 445
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.009 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..|++. |++||||||++..||..+
T Consensus 99 ~p~vI~~v-----G~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMV-----GLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 35667777 999999999888887755
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.93 E-value=0.0077 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALT-----GKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999997654
No 447
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.93 E-value=0.0077 Score=48.47 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAII-----GESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 456678888 999999999999998654
No 448
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.93 E-value=0.0084 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
..+..++++ ||||+|||++|+.|++..+
T Consensus 37 lag~hVLL~-----GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 37 LSGESVFLL-----GPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCCCEEEE-----CCCChhHHHHHHHHHHHhc
Confidence 345568999 9999999999999999764
No 449
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.91 E-value=0.0084 Score=47.20 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALL-----GRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHhccC
Confidence 3466678888 999999999999998764
No 450
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.91 E-value=0.0067 Score=49.61 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=23.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..-+.++|. ||||+||||-+..||..+
T Consensus 46 gnmP~liis-----GpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIIS-----GPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEee-----CCCCCchhhHHHHHHHHH
Confidence 445678899 999999999999999887
No 451
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.91 E-value=0.0048 Score=48.72 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.5
Q ss_pred cccCCCCCChhHHHHHHHH
Q 025529 41 WLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~ 59 (251)
.|+|..||||||+.+.|.+
T Consensus 4 ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 4 IITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4459999999999999985
No 452
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.90 E-value=0.0079 Score=49.33 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVL-----GRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3567788899 999999999999998655
No 453
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0082 Score=49.35 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGII-----GRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 567788888 999999999999998765
No 454
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.90 E-value=0.01 Score=51.46 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=27.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~ 68 (251)
..+.-+++. ||||+|||.+|-.+++.+| .||.+.
T Consensus 63 ~aGrgiLi~-----GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 63 MAGRGILIV-----GPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred ccccEEEEE-----CCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 346678888 9999999999999999996 454433
No 455
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0081 Score=49.59 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALI-----GPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence 3567778888 999999999999998654
No 456
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0087 Score=46.91 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.++++ |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLL-----GPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3466788888 999999999999997654
No 457
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.89 E-value=0.0075 Score=48.86 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=23.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIV-----GPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHcCCC
Confidence 466678888 999999999999997654
No 458
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.89 E-value=0.009 Score=46.81 Aligned_cols=28 Identities=39% Similarity=0.653 Sum_probs=23.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++..+++. |+.||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~-----G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAII-----GPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEE-----CCCCCCHHHHHHHHHhcc
Confidence 3566788888 999999999999998754
No 459
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.89 E-value=0.0082 Score=49.64 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=24.4
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..-.++-.++|+ |+.||||||+.+.|+-.+
T Consensus 23 ~~i~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 23 LNINPGEFVAII-----GPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEcCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence 333567788888 999999999999998654
No 460
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.88 E-value=0.0083 Score=49.24 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLL-----GPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466788888 999999999999998654
No 461
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.88 E-value=0.0083 Score=47.42 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 23 i~~G~~~~i~-----G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIA-----GLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3566778888 999999999999998765
No 462
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.88 E-value=0.0088 Score=46.46 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 23 i~~Ge~~~l~-----G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALL-----GENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3567788888 999999999999997654
No 463
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0084 Score=49.54 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALL-----GPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466778888 999999999999998754
No 464
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.87 E-value=0.01 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..|.+. |++||||||++..||..+
T Consensus 99 ~~~vi~lv-----G~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFV-----GLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 35677788 999999999999999877
No 465
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0033 Score=52.00 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=25.5
Q ss_pred HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.....-..+..++++ ||+||||||+.+.+..-.
T Consensus 19 ~v~l~I~~gef~vli-----GpSGsGKTTtLkMINrLi 51 (309)
T COG1125 19 DVNLTIEEGEFLVLI-----GPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeEEecCCeEEEEE-----CCCCCcHHHHHHHHhccc
Confidence 333334578889999 999999999999886544
No 466
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.87 E-value=0.0087 Score=48.99 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~-----G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALI-----GPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence 466778888 999999999999998765
No 467
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0085 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIV-----GSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 456677888 999999999999998654
No 468
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.86 E-value=0.0087 Score=49.92 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++....|+ ||.||||||+.+.|+.-+
T Consensus 25 i~~G~i~~ii-----GpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGIL-----GPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEE-----CCCCCCHHHHHHHHhccC
Confidence 3467788888 999999999999998866
No 469
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.86 E-value=0.0083 Score=49.05 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.-.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 27 ~i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLV-----GESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 33567788888 999999999999998654
No 470
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0082 Score=48.93 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 28 ~~G~~~~i~-----G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALV-----GPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 456678888 999999999999997654
No 471
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.017 Score=54.29 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++.+.+.+.+ ...+-+..++|. |++|+||||+++.|++.++.
T Consensus 23 ~vv~~L~~~l-~~~rl~ha~Lf~-----Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 23 HVVQALTNAL-TQQRLHHAYLFT-----GTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHHHHHH-HcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhcC
Confidence 3444344433 344556678999 99999999999999999875
No 472
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.86 E-value=0.78 Score=38.06 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=60.5
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 103 (251)
....+...+++. |..|+|||++.+.+..+| |+-.|.+.. . .+. .+..
T Consensus 47 l~G~pannvLL~-----G~rGtGKSSlVkall~~y~~~GLRlIev~k---~----------~L~------------~l~~ 96 (249)
T PF05673_consen 47 LQGLPANNVLLW-----GARGTGKSSLVKALLNEYADQGLRLIEVSK---E----------DLG------------DLPE 96 (249)
T ss_pred HcCCCCcceEEe-----cCCCCCHHHHHHHHHHHHhhcCceEEEECH---H----------Hhc------------cHHH
Confidence 445678889999 999999999999999988 444444421 0 000 0112
Q ss_pred HHHHHHcCCCCCCceE--EeC--CCCCHHHHHHHHHHHHhc--CCCcCEEEEEecCHHHHHHHHh
Q 025529 104 IIDEAMKKPSCQKGFI--LDG--FPRTEVQAQKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 104 ll~~~l~~~~~~~~~I--idg--~~~~~~~~~~l~~~~~~~--~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
++ ..+...+ ..|| +|. |.........|..++.+. ..+-.++||.+.+---+++...
T Consensus 97 l~-~~l~~~~--~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 97 LL-DLLRDRP--YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred HH-HHHhcCC--CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence 22 2222222 2344 464 444456677787777542 1234577888877765555543
No 473
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.85 E-value=0.0088 Score=49.33 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=23.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALL-----GPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence 467788888 999999999999998654
No 474
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.85 E-value=0.0082 Score=50.02 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.++|+ |++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIV-----GESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3567788888 999999999999998765
No 475
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0086 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.++..+.++ |+.||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~-----G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALM-----GESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEE-----CCCCCCHHHHHHHHhC
Confidence 466778888 9999999999999985
No 476
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.017 Score=54.62 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
++.+.+.+.+. .++.+..++|. |++|+||||+++.|++.++..
T Consensus 23 ~vv~~L~~ai~-~~rl~Ha~Lf~-----GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 23 HVVKALQNALD-EGRLHHAYLLT-----GTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHH-cCCCCeEEEEE-----CCCCCcHHHHHHHHHHHhccc
Confidence 34444444443 34456678999 999999999999999998654
No 477
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.84 E-value=0.01 Score=47.04 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=21.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-...+. ||+||||||+.+.|....
T Consensus 26 ~~Gef~fl~-----GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLT-----GPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEE-----CCCCCCHHHHHHHHHhhh
Confidence 455556666 999999999999997665
No 478
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.84 E-value=0.0078 Score=57.09 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=28.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
+..+++. ||||+||||+++.++...+.+++..+
T Consensus 185 ~~gill~-----G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 185 PKGVLMV-----GPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCcEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4458888 99999999999999999998877553
No 479
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.84 E-value=0.0091 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.++|+ |+.||||||+.+.|+-.+
T Consensus 30 i~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLIT-----GPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHhccc
Confidence 3566778888 999999999999997643
No 480
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.84 E-value=0.0082 Score=52.43 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+.+.+|++. |++||||||+.+.|...+.
T Consensus 159 v~~~~nilI~-----G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 159 VVGRLTMLLC-----GPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHcCCeEEEE-----CCCCccHHHHHHHHHcccC
Confidence 3456689999 9999999999999988763
No 481
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0097 Score=46.54 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=24.8
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..-.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 23 ~~i~~G~~~~l~-----G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIV-----GPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEE-----CCCCCCHHHHHHHHHcCC
Confidence 334567788888 999999999999998765
No 482
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.019 Score=51.20 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.+.-++|. ||+|+||||+|..|++.+...
T Consensus 35 l~ha~Lf~-----Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFT-----GPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHHHHhCCC
Confidence 46678999 999999999999999988543
No 483
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.82 E-value=0.015 Score=49.13 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 18 MTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++++.............++|. |++|+||||+|..++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~-----G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIV-----GMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEE-----ESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHhhCCCCCeEEEEEE-----cCCcCCcceeeeecccc
Confidence 334444444333567778888 99999999999999877
No 484
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.82 E-value=0.0092 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.++ |++||||||+.+.|+-.+
T Consensus 5 ~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLL-----GPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 45677888 999999999999998765
No 485
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.81 E-value=0.0096 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
-.++.++++. ||.||||||+.+.+.
T Consensus 18 i~~G~~~~l~-----G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVT-----GVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEE-----CCCCCCHHHHHHHHh
Confidence 3566788888 999999999999885
No 486
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.80 E-value=0.0091 Score=49.34 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++-.+.|+ |+.||||||+.+.|+-.
T Consensus 24 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIM-----GPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 466788888 99999999999999865
No 487
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0093 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIV-----GPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466678888 999999999999998754
No 488
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.80 E-value=0.0071 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.0
Q ss_pred cccCCCCCChhHHHHHHHHHh
Q 025529 41 WLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~ 61 (251)
+++|.+|+||||++..|+..+
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 344999999999999998876
No 489
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.80 E-value=0.011 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..+++. |++||||||++..||..+
T Consensus 98 ~p~vi~~v-----G~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMV-----GLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 35567777 999999999988888764
No 490
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.80 E-value=0.0095 Score=49.53 Aligned_cols=27 Identities=41% Similarity=0.521 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAII-----GPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 467778888 999999999999998654
No 491
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.0095 Score=49.28 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLL-----GPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466778888 999999999999998654
No 492
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.79 E-value=0.01 Score=47.70 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~-----G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLK-----GSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 467788888 999999999999997654
No 493
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.79 E-value=0.0067 Score=49.65 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.7
Q ss_pred ccCCCCCChhHHHHHHHHHh
Q 025529 42 LAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~ 61 (251)
|.|+|||||||..+.+.+..
T Consensus 3 v~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 3 VHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred EEcCCCCCHHHHHHHHHHhc
Confidence 44999999999999998874
No 494
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.79 E-value=0.019 Score=49.25 Aligned_cols=23 Identities=39% Similarity=0.771 Sum_probs=21.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. |+||+||||+++.+++.+
T Consensus 40 ~~ll~-----G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFA-----GPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 47888 999999999999999986
No 495
>PF13479 AAA_24: AAA domain
Probab=95.79 E-value=0.0075 Score=49.08 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=22.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+.+++|. |+||+||||++..+ =+..+|++
T Consensus 2 ~~~~~lIy-----G~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 2 KPIKILIY-----GPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CceEEEEE-----CCCCCCHHHHHHhC---CCeEEEEe
Confidence 46678888 99999999999888 23345555
No 496
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.78 E-value=0.077 Score=45.76 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+...+++- |+.|+|||++++.|++. +..++++..+.+.. ++.+|..- ....+ +-..+...+...+.
T Consensus 126 ~~~~~vl~-----g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hr---Gs~fG~~~----~~~qp-sq~~fe~~L~~~l~ 191 (311)
T TIGR03167 126 PFPLIVLG-----GMTGSGKTELLHALANA-GAQVLDLEGLANHR---GSSFGALG----LGPQP-SQKRFENALAEALR 191 (311)
T ss_pred CCceeccC-----CCCCcCHHHHHHHHhcC-CCeEEECCchHHhc---CcccCCCC----CCCCC-chHHHHHHHHHHHH
Confidence 33445566 99999999999999876 78888887654331 11111100 00000 01223334444444
Q ss_pred CCCCCCceEEeCCCCCHHHH---HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 111 KPSCQKGFILDGFPRTEVQA---QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~---~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+..+.+++.+-...+-.. ..|.+.|. . ..+|.+++|.+.+.+|+....
T Consensus 192 ~~~~~~~i~~e~es~~ig~~~~p~~l~~~m~---~--~~~i~i~~~~e~Rv~~l~~~Y 244 (311)
T TIGR03167 192 RLDPGRPIFVEDESRRIGRVALPDALFEAMR---A--APLVELEASLEERVERLVEEY 244 (311)
T ss_pred hCCCCceEEEEeCchhhccccCCHHHHHHHh---h--CCEEEEECCHHHHHHHHHHHh
Confidence 44544566665433322211 22333332 2 247789999999999998764
No 497
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.78 E-value=0.0098 Score=48.36 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++++ |+.||||||+.+.|+-.+
T Consensus 11 ~~Ge~~~l~-----G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGIL-----AAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCc
Confidence 456678888 999999999999998654
No 498
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.77 E-value=0.01 Score=47.83 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.+.+. |+.||||||+.+.|+-.+
T Consensus 24 i~~Ge~~~l~-----G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIE-----GPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 3566788888 999999999999998754
No 499
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.77 E-value=0.01 Score=49.44 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++-+++|+ |++|+||||+++.+.+...
T Consensus 14 ~~Gqr~~I~-----G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIV-----APPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHhccc
Confidence 478899999 9999999999999998764
No 500
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.017 Score=54.43 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.++-+..++|. |++|+||||+++.|++.++..
T Consensus 34 ~~rl~hAyLf~-----Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 34 LGRLHHAYLFS-----GTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cCCCCeEEEEE-----CCCCCCHHHHHHHHHHhhhhc
Confidence 34456668899 999999999999999999753
Done!