Query 025529
Match_columns 251
No_of_seqs 123 out of 1453
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 100.0 1.1E-43 3.7E-48 289.0 22.4 211 31-250 7-228 (230)
2 3sr0_A Adenylate kinase; phosp 100.0 5E-43 1.7E-47 282.7 25.8 204 33-251 1-204 (206)
3 3tlx_A Adenylate kinase 2; str 100.0 1.2E-41 4.2E-46 281.9 26.8 239 7-250 4-242 (243)
4 3dl0_A Adenylate kinase; phosp 100.0 6.8E-38 2.3E-42 254.6 25.3 213 33-250 1-213 (216)
5 3fb4_A Adenylate kinase; psych 100.0 3.1E-37 1.1E-41 250.6 25.9 214 33-251 1-214 (216)
6 3be4_A Adenylate kinase; malar 100.0 7.9E-37 2.7E-41 248.8 25.1 216 29-249 2-217 (217)
7 3umf_A Adenylate kinase; rossm 100.0 5.2E-37 1.8E-41 248.8 22.1 186 30-251 27-213 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 4.1E-35 1.4E-39 241.2 27.5 217 29-250 13-229 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 1.9E-34 6.6E-39 235.0 26.8 216 30-250 2-218 (220)
10 1e4v_A Adenylate kinase; trans 100.0 1.6E-34 5.4E-39 234.6 23.1 209 33-250 1-214 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 2.1E-34 7.3E-39 235.4 21.4 212 33-250 1-223 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 5.5E-32 1.9E-36 221.6 23.9 209 30-250 5-213 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 5.4E-30 1.8E-34 208.9 20.0 205 31-250 4-209 (222)
14 2cdn_A Adenylate kinase; phosp 100.0 7.9E-27 2.7E-31 187.3 23.4 184 29-250 17-200 (201)
15 3cm0_A Adenylate kinase; ATP-b 99.9 1E-25 3.6E-30 178.2 22.7 183 31-250 3-185 (186)
16 1qf9_A UMP/CMP kinase, protein 99.9 5.9E-25 2E-29 174.5 23.9 186 31-250 5-190 (194)
17 2c95_A Adenylate kinase 1; tra 99.9 5.8E-25 2E-29 175.2 21.4 184 31-250 8-192 (196)
18 1tev_A UMP-CMP kinase; ploop, 99.9 2.1E-24 7.3E-29 171.5 22.5 187 31-250 2-193 (196)
19 1ukz_A Uridylate kinase; trans 99.9 2E-24 6.7E-29 173.4 20.3 186 29-250 12-200 (203)
20 2bwj_A Adenylate kinase 5; pho 99.9 2.7E-24 9.1E-29 171.7 20.2 184 31-250 11-195 (199)
21 2bbw_A Adenylate kinase 4, AK4 99.9 3.6E-23 1.2E-27 171.1 24.9 208 31-250 26-233 (246)
22 3lw7_A Adenylate kinase relate 99.8 1.6E-17 5.5E-22 129.1 20.6 169 33-250 2-175 (179)
23 4eaq_A DTMP kinase, thymidylat 99.7 1.9E-16 6.5E-21 129.4 17.4 179 28-250 22-223 (229)
24 4hlc_A DTMP kinase, thymidylat 99.7 3.6E-16 1.2E-20 125.5 18.0 172 33-250 3-199 (205)
25 3vaa_A Shikimate kinase, SK; s 99.7 1.9E-16 6.4E-21 126.5 14.4 166 30-250 23-194 (199)
26 2pbr_A DTMP kinase, thymidylat 99.7 1.8E-15 6.3E-20 119.6 19.0 162 34-250 2-190 (195)
27 2z0h_A DTMP kinase, thymidylat 99.7 3E-15 1E-19 118.7 18.8 165 34-250 2-190 (197)
28 4edh_A DTMP kinase, thymidylat 99.7 2.6E-15 8.8E-20 121.2 17.2 174 31-250 5-205 (213)
29 2wwf_A Thymidilate kinase, put 99.7 2.8E-17 9.5E-22 132.1 5.5 175 30-250 8-198 (212)
30 3hjn_A DTMP kinase, thymidylat 99.7 2.5E-15 8.4E-20 120.0 16.7 168 33-251 1-191 (197)
31 1ly1_A Polynucleotide kinase; 99.7 4.2E-15 1.4E-19 116.1 17.0 162 33-249 3-170 (181)
32 3v9p_A DTMP kinase, thymidylat 99.7 7.6E-16 2.6E-20 125.3 13.1 175 30-250 23-225 (227)
33 3t61_A Gluconokinase; PSI-biol 99.7 2.2E-15 7.7E-20 120.4 14.9 158 32-250 18-178 (202)
34 3trf_A Shikimate kinase, SK; a 99.7 2.5E-15 8.7E-20 118.2 14.6 163 32-250 5-173 (185)
35 1kht_A Adenylate kinase; phosp 99.7 1.9E-15 6.4E-20 119.3 13.6 175 32-250 3-192 (192)
36 1nks_A Adenylate kinase; therm 99.6 5.2E-15 1.8E-19 116.8 15.0 167 34-250 3-194 (194)
37 4tmk_A Protein (thymidylate ki 99.6 1.8E-14 6.2E-19 116.2 18.1 173 31-250 2-205 (213)
38 2pt5_A Shikimate kinase, SK; a 99.6 4.6E-15 1.6E-19 114.9 13.9 158 33-250 1-162 (168)
39 1zuh_A Shikimate kinase; alpha 99.6 1.1E-15 3.8E-20 118.5 9.5 102 41-164 11-117 (168)
40 3lv8_A DTMP kinase, thymidylat 99.6 4E-15 1.4E-19 121.7 13.1 178 30-250 25-227 (236)
41 1jjv_A Dephospho-COA kinase; P 99.6 9.1E-15 3.1E-19 117.1 15.0 160 40-250 5-195 (206)
42 2v54_A DTMP kinase, thymidylat 99.6 9.1E-15 3.1E-19 116.6 14.3 166 31-250 3-189 (204)
43 1e6c_A Shikimate kinase; phosp 99.6 1.9E-14 6.4E-19 111.8 15.5 160 34-250 4-169 (173)
44 2iyv_A Shikimate kinase, SK; t 99.6 4.8E-15 1.7E-19 116.6 12.1 162 33-250 3-167 (184)
45 3kb2_A SPBC2 prophage-derived 99.6 1.7E-14 5.9E-19 111.8 14.9 147 34-250 3-165 (173)
46 4i1u_A Dephospho-COA kinase; s 99.6 2.5E-14 8.7E-19 114.6 15.6 161 40-250 12-200 (210)
47 2plr_A DTMP kinase, probable t 99.6 3.9E-14 1.3E-18 113.4 14.4 176 31-250 3-206 (213)
48 1vht_A Dephospho-COA kinase; s 99.6 1.9E-14 6.4E-19 116.3 12.3 164 31-250 3-193 (218)
49 1y63_A LMAJ004144AAA protein; 99.6 1.1E-13 3.9E-18 108.9 16.4 114 27-165 5-122 (184)
50 2rhm_A Putative kinase; P-loop 99.6 2.4E-14 8.3E-19 113.1 12.2 124 30-165 3-126 (193)
51 3ld9_A DTMP kinase, thymidylat 99.6 5.3E-15 1.8E-19 119.9 8.2 173 27-250 16-214 (223)
52 2vli_A Antibiotic resistance p 99.6 2.6E-13 8.8E-18 106.3 17.4 160 30-250 3-170 (183)
53 1nn5_A Similar to deoxythymidy 99.6 6.3E-15 2.2E-19 118.5 7.8 172 30-250 7-199 (215)
54 2f6r_A COA synthase, bifunctio 99.6 4.7E-14 1.6E-18 118.6 13.3 165 31-250 74-267 (281)
55 3tmk_A Thymidylate kinase; pho 99.6 2.8E-14 9.4E-19 115.2 11.3 176 31-250 4-201 (216)
56 1via_A Shikimate kinase; struc 99.5 3E-14 1E-18 111.2 10.6 156 34-250 6-165 (175)
57 2if2_A Dephospho-COA kinase; a 99.5 4.8E-14 1.6E-18 112.6 11.7 159 41-250 5-190 (204)
58 2jaq_A Deoxyguanosine kinase; 99.5 5.7E-13 1.9E-17 106.0 17.9 170 33-250 1-199 (205)
59 1ltq_A Polynucleotide kinase; 99.5 2.7E-14 9.2E-19 120.9 9.7 124 33-165 3-127 (301)
60 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 9.8E-14 3.4E-18 115.3 12.8 163 31-250 3-172 (260)
61 3ake_A Cytidylate kinase; CMP 99.5 1E-13 3.6E-18 110.7 12.4 160 42-250 7-207 (208)
62 4eun_A Thermoresistant glucoki 99.5 3.9E-14 1.3E-18 113.0 9.6 162 27-250 24-192 (200)
63 3nwj_A ATSK2; P loop, shikimat 99.5 8.1E-14 2.8E-18 115.0 11.2 171 32-250 48-235 (250)
64 1knq_A Gluconate kinase; ALFA/ 99.5 2.1E-12 7E-17 100.6 18.7 159 30-250 6-172 (175)
65 1cke_A CK, MSSA, protein (cyti 99.5 1.7E-13 5.8E-18 111.1 12.3 115 32-162 5-159 (227)
66 1kag_A SKI, shikimate kinase I 99.5 2.7E-13 9.4E-18 105.2 11.7 163 32-250 4-171 (173)
67 1uf9_A TT1252 protein; P-loop, 99.5 5.6E-13 1.9E-17 106.0 13.7 163 30-250 6-192 (203)
68 3fdi_A Uncharacterized protein 99.5 3.4E-13 1.2E-17 107.8 11.4 168 33-250 7-197 (201)
69 1uj2_A Uridine-cytidine kinase 99.5 4.3E-14 1.5E-18 116.9 5.3 174 29-250 19-232 (252)
70 3iij_A Coilin-interacting nucl 99.4 1.2E-12 4.1E-17 102.4 12.6 109 31-165 10-118 (180)
71 3hdt_A Putative kinase; struct 99.4 1.2E-12 4.1E-17 106.2 12.2 172 32-250 14-217 (223)
72 2qt1_A Nicotinamide riboside k 99.4 8.7E-14 3E-18 111.5 4.5 168 30-250 19-204 (207)
73 2grj_A Dephospho-COA kinase; T 99.4 1.9E-12 6.6E-17 102.6 10.2 42 32-78 12-53 (192)
74 1q3t_A Cytidylate kinase; nucl 99.4 2.2E-12 7.5E-17 105.5 10.0 42 29-75 13-54 (236)
75 2yvu_A Probable adenylyl-sulfa 99.4 5.4E-12 1.9E-16 99.2 11.7 114 30-162 11-131 (186)
76 1p5z_B DCK, deoxycytidine kina 99.4 7.3E-13 2.5E-17 110.1 6.7 83 142-250 173-257 (263)
77 4e22_A Cytidylate kinase; P-lo 99.4 2E-11 6.9E-16 100.8 14.9 41 30-75 25-65 (252)
78 2h92_A Cytidylate kinase; ross 99.3 2.8E-12 9.6E-17 103.4 9.1 39 32-75 3-41 (219)
79 2qor_A Guanylate kinase; phosp 99.3 5.9E-11 2E-15 94.8 16.5 168 30-250 10-195 (204)
80 1m7g_A Adenylylsulfate kinase; 99.3 2.2E-12 7.5E-17 103.7 8.0 115 29-161 22-149 (211)
81 1gvn_B Zeta; postsegregational 99.3 4.3E-10 1.5E-14 94.6 20.7 143 9-165 7-163 (287)
82 2p5t_B PEZT; postsegregational 99.3 1.8E-11 6E-16 101.2 9.3 145 8-165 5-158 (253)
83 2vp4_A Deoxynucleoside kinase; 99.2 1.8E-11 6.3E-16 99.7 8.0 80 140-250 143-223 (230)
84 1qhx_A CPT, protein (chloramph 99.2 3.2E-10 1.1E-14 88.2 14.2 123 32-165 3-134 (178)
85 2pez_A Bifunctional 3'-phospho 99.2 1.1E-10 3.9E-15 91.0 10.5 116 30-164 3-125 (179)
86 3r20_A Cytidylate kinase; stru 99.2 2.1E-09 7.2E-14 87.5 17.4 40 31-75 8-47 (233)
87 3zvl_A Bifunctional polynucleo 99.1 7.5E-11 2.6E-15 104.3 8.1 103 30-165 256-358 (416)
88 2ocp_A DGK, deoxyguanosine kin 99.1 1E-09 3.4E-14 89.8 14.3 29 31-64 1-30 (241)
89 3uie_A Adenylyl-sulfate kinase 99.0 3.3E-09 1.1E-13 84.3 13.0 38 29-71 22-64 (200)
90 1x6v_B Bifunctional 3'-phospho 99.0 1.5E-09 5.2E-14 99.8 10.5 114 31-162 51-170 (630)
91 2axn_A 6-phosphofructo-2-kinas 98.9 1.2E-08 4E-13 92.6 13.7 124 31-165 34-169 (520)
92 1gtv_A TMK, thymidylate kinase 98.9 1.6E-10 5.3E-15 92.5 0.6 78 143-247 132-209 (214)
93 2gks_A Bifunctional SAT/APS ki 98.9 2.7E-09 9.4E-14 97.2 8.2 127 16-162 356-488 (546)
94 3tr0_A Guanylate kinase, GMP k 98.9 1.5E-08 5E-13 80.4 11.0 27 31-62 6-32 (205)
95 3tau_A Guanylate kinase, GMP k 98.9 9E-09 3.1E-13 82.3 9.6 28 30-62 6-33 (208)
96 1ex7_A Guanylate kinase; subst 98.8 4E-08 1.4E-12 77.2 12.1 163 35-250 4-183 (186)
97 2j41_A Guanylate kinase; GMP, 98.8 6E-08 2E-12 76.9 13.4 27 30-61 4-30 (207)
98 1m8p_A Sulfate adenylyltransfe 98.8 1.4E-08 4.8E-13 93.0 9.7 113 30-161 394-513 (573)
99 1p6x_A Thymidine kinase; P-loo 98.8 5.1E-08 1.8E-12 83.3 12.3 28 31-63 6-33 (334)
100 2bdt_A BH3686; alpha-beta prot 98.8 5.2E-08 1.8E-12 76.4 11.4 117 34-165 4-123 (189)
101 2ze6_A Isopentenyl transferase 98.7 2.1E-08 7.1E-13 82.7 8.0 121 34-165 3-139 (253)
102 3asz_A Uridine kinase; cytidin 98.7 8.4E-08 2.9E-12 76.4 10.0 38 29-71 3-42 (211)
103 1a7j_A Phosphoribulokinase; tr 98.7 7.2E-09 2.5E-13 87.2 3.1 38 31-73 4-46 (290)
104 3ch4_B Pmkase, phosphomevalona 98.7 4E-07 1.4E-11 72.1 12.7 113 31-161 10-144 (202)
105 3czq_A Putative polyphosphate 98.6 2.6E-07 9E-12 77.4 11.6 165 30-250 84-277 (304)
106 1rz3_A Hypothetical protein rb 98.6 8.1E-08 2.8E-12 76.2 6.1 42 15-61 4-46 (201)
107 3a00_A Guanylate kinase, GMP k 98.5 7.3E-07 2.5E-11 69.7 11.2 67 146-250 116-183 (186)
108 2jeo_A Uridine-cytidine kinase 98.5 3.8E-06 1.3E-10 68.6 13.7 35 25-64 18-52 (245)
109 3cr8_A Sulfate adenylyltranfer 98.4 7.9E-07 2.7E-11 81.0 9.3 128 16-162 353-487 (552)
110 1osn_A Thymidine kinase, VZV-T 98.4 1.8E-06 6.1E-11 73.8 10.8 28 31-63 11-39 (341)
111 3lnc_A Guanylate kinase, GMP k 98.4 5.6E-07 1.9E-11 72.8 7.1 27 30-61 25-52 (231)
112 1e2k_A Thymidine kinase; trans 98.4 2.1E-06 7.1E-11 73.2 10.7 27 31-62 3-29 (331)
113 1of1_A Thymidine kinase; trans 98.4 4.1E-06 1.4E-10 72.4 12.2 28 30-62 47-74 (376)
114 1bif_A 6-phosphofructo-2-kinas 98.4 4.4E-06 1.5E-10 74.8 12.5 118 30-164 37-172 (469)
115 1s96_A Guanylate kinase, GMP k 98.2 0.00014 4.8E-09 58.3 16.2 27 31-62 15-41 (219)
116 3tqc_A Pantothenate kinase; bi 98.1 1.8E-06 6.3E-11 73.3 5.1 37 30-71 90-133 (321)
117 3czp_A Putative polyphosphate 98.0 2E-05 7E-10 70.7 10.0 29 29-62 40-68 (500)
118 1dek_A Deoxynucleoside monopho 98.0 3.2E-06 1.1E-10 68.9 4.0 39 39-77 3-41 (241)
119 1sq5_A Pantothenate kinase; P- 98.0 1.6E-05 5.5E-10 67.2 8.2 36 30-70 78-120 (308)
120 3czp_A Putative polyphosphate 98.0 3.6E-05 1.2E-09 69.0 9.8 109 29-167 297-428 (500)
121 4gp7_A Metallophosphoesterase; 97.9 0.00022 7.4E-09 54.7 13.1 112 31-165 8-122 (171)
122 1zp6_A Hypothetical protein AT 97.9 7.9E-06 2.7E-10 63.7 4.4 119 29-165 6-127 (191)
123 3d3q_A TRNA delta(2)-isopenten 97.9 3.9E-06 1.3E-10 71.7 2.4 33 34-71 9-41 (340)
124 3crm_A TRNA delta(2)-isopenten 97.9 6.7E-06 2.3E-10 69.8 3.2 34 33-71 6-39 (323)
125 3a8t_A Adenylate isopentenyltr 97.8 9.5E-06 3.2E-10 69.2 3.2 37 30-71 38-74 (339)
126 3c8u_A Fructokinase; YP_612366 97.8 2E-05 6.8E-10 62.6 4.9 50 16-70 6-60 (208)
127 2ga8_A Hypothetical 39.9 kDa p 97.7 1.2E-05 4.2E-10 68.9 2.9 46 15-65 5-52 (359)
128 1g8f_A Sulfate adenylyltransfe 97.7 2.6E-05 9E-10 70.2 4.7 51 15-70 378-435 (511)
129 3foz_A TRNA delta(2)-isopenten 97.7 3E-05 1E-09 65.3 4.1 36 30-70 8-43 (316)
130 3rhf_A Putative polyphosphate 97.7 0.00057 1.9E-08 56.6 11.6 164 31-250 74-266 (289)
131 3exa_A TRNA delta(2)-isopenten 97.6 2.6E-05 8.9E-10 65.8 3.1 35 32-71 3-37 (322)
132 3t15_A Ribulose bisphosphate c 97.6 3.9E-05 1.3E-09 64.3 3.9 35 30-69 34-68 (293)
133 4b4t_J 26S protease regulatory 97.6 5.8E-05 2E-09 65.9 5.1 34 30-68 180-213 (405)
134 4b4t_M 26S protease regulatory 97.5 5.1E-05 1.7E-09 67.0 4.2 34 30-68 213-246 (434)
135 4b4t_K 26S protease regulatory 97.5 5.8E-05 2E-09 66.5 4.2 34 30-68 204-237 (428)
136 4b4t_L 26S protease subunit RP 97.5 5.9E-05 2E-09 66.6 4.2 34 30-68 213-246 (437)
137 3ec2_A DNA replication protein 97.5 9.8E-05 3.3E-09 56.9 4.9 39 31-74 37-81 (180)
138 3hws_A ATP-dependent CLP prote 97.5 0.00012 4.1E-09 63.1 5.7 34 31-69 50-83 (363)
139 1kgd_A CASK, peripheral plasma 97.5 7.9E-05 2.7E-09 57.7 4.0 29 29-62 2-30 (180)
140 2x8a_A Nuclear valosin-contain 97.4 0.00011 3.9E-09 60.9 4.8 30 34-68 46-75 (274)
141 4b4t_H 26S protease regulatory 97.4 9E-05 3.1E-09 65.7 3.7 34 30-68 241-274 (467)
142 1odf_A YGR205W, hypothetical 3 97.4 0.00023 7.8E-09 59.6 6.0 30 28-62 27-56 (290)
143 1lv7_A FTSH; alpha/beta domain 97.4 0.00013 4.4E-09 59.6 4.4 32 32-68 45-76 (257)
144 3n70_A Transport activator; si 97.4 0.00019 6.7E-09 53.4 4.9 41 16-61 8-48 (145)
145 4b4t_I 26S protease regulatory 97.4 0.00011 3.9E-09 64.4 4.1 34 30-68 214-247 (437)
146 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00013 4.5E-09 59.4 4.3 34 30-68 37-70 (262)
147 3eph_A TRNA isopentenyltransfe 97.4 9.1E-05 3.1E-09 64.6 3.4 33 33-70 3-35 (409)
148 2r62_A Cell division protease 97.4 7.7E-05 2.6E-09 61.3 2.7 32 32-68 44-75 (268)
149 1g41_A Heat shock protein HSLU 97.3 0.00012 4.3E-09 64.7 3.9 34 31-69 49-82 (444)
150 3h4m_A Proteasome-activating n 97.3 0.00025 8.5E-09 58.7 5.5 34 30-68 49-82 (285)
151 3cf0_A Transitional endoplasmi 97.3 0.00016 5.3E-09 60.8 4.0 40 30-74 47-88 (301)
152 3eie_A Vacuolar protein sortin 97.3 0.00032 1.1E-08 59.4 5.9 34 31-69 50-83 (322)
153 3b9p_A CG5977-PA, isoform A; A 97.3 0.00017 5.7E-09 60.2 4.1 33 31-68 53-85 (297)
154 1jbk_A CLPB protein; beta barr 97.3 0.0004 1.4E-08 53.2 5.8 40 15-61 28-67 (195)
155 2c9o_A RUVB-like 1; hexameric 97.3 0.00034 1.2E-08 62.2 5.9 35 30-69 61-97 (456)
156 1ye8_A Protein THEP1, hypothet 97.2 0.00018 6.3E-09 55.7 3.5 27 33-64 1-27 (178)
157 1ofh_A ATP-dependent HSL prote 97.2 0.00026 8.9E-09 59.0 4.7 33 31-68 49-81 (310)
158 1svm_A Large T antigen; AAA+ f 97.2 0.00047 1.6E-08 59.8 6.2 35 28-67 165-199 (377)
159 1d2n_A N-ethylmaleimide-sensit 97.2 0.00024 8.3E-09 58.5 4.1 35 29-68 61-95 (272)
160 3d8b_A Fidgetin-like protein 1 97.2 0.00037 1.3E-08 60.0 5.4 34 30-68 115-148 (357)
161 3ney_A 55 kDa erythrocyte memb 97.2 0.00029 9.8E-09 55.5 4.2 29 29-62 16-44 (197)
162 2p65_A Hypothetical protein PF 97.2 0.00039 1.3E-08 53.2 4.9 38 17-61 30-67 (187)
163 2qmh_A HPR kinase/phosphorylas 97.2 0.00023 7.8E-09 56.1 3.4 34 31-70 33-66 (205)
164 1ixz_A ATP-dependent metallopr 97.1 0.00039 1.3E-08 56.6 4.7 31 33-68 50-80 (254)
165 3pfi_A Holliday junction ATP-d 97.1 0.00047 1.6E-08 58.5 5.4 49 16-69 36-87 (338)
166 1um8_A ATP-dependent CLP prote 97.1 0.00028 9.7E-09 61.0 4.0 34 31-69 71-104 (376)
167 2kjq_A DNAA-related protein; s 97.1 0.00049 1.7E-08 51.6 4.8 26 31-61 35-60 (149)
168 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00032 1.1E-08 59.5 4.0 32 31-67 44-76 (322)
169 3syl_A Protein CBBX; photosynt 97.1 0.00047 1.6E-08 57.7 4.9 28 29-61 64-91 (309)
170 1lvg_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 55.3 3.4 26 31-61 3-28 (198)
171 2qp9_X Vacuolar protein sortin 97.1 0.00033 1.1E-08 60.3 3.8 34 31-69 83-116 (355)
172 3co5_A Putative two-component 97.1 0.00013 4.5E-09 54.2 1.0 48 15-68 10-57 (143)
173 1in4_A RUVB, holliday junction 97.0 0.00077 2.6E-08 57.4 5.6 30 31-65 50-79 (334)
174 1l8q_A Chromosomal replication 97.0 0.0012 4E-08 55.8 6.6 47 21-72 25-77 (324)
175 2w58_A DNAI, primosome compone 97.0 0.0019 6.4E-08 50.5 7.3 36 33-73 55-95 (202)
176 1tue_A Replication protein E1; 97.0 0.00073 2.5E-08 53.4 4.7 30 32-66 58-87 (212)
177 1iy2_A ATP-dependent metallopr 97.0 0.00074 2.5E-08 55.8 5.0 30 34-68 75-104 (278)
178 1c9k_A COBU, adenosylcobinamid 97.0 0.00023 7.8E-09 55.2 1.7 24 40-64 2-25 (180)
179 3vfd_A Spastin; ATPase, microt 97.0 0.00096 3.3E-08 58.0 5.7 33 31-68 147-179 (389)
180 3cf2_A TER ATPase, transitiona 96.9 0.00047 1.6E-08 65.3 3.5 35 30-69 236-270 (806)
181 1xjc_A MOBB protein homolog; s 96.9 0.00044 1.5E-08 53.1 2.7 24 33-61 5-28 (169)
182 2ce7_A Cell division protein F 96.9 0.0007 2.4E-08 60.5 4.2 33 31-68 48-80 (476)
183 3aez_A Pantothenate kinase; tr 96.9 0.0011 3.9E-08 55.9 5.3 28 29-61 87-114 (312)
184 3bos_A Putative DNA replicatio 96.9 0.0018 6.3E-08 51.5 6.3 27 31-62 51-77 (242)
185 1z6g_A Guanylate kinase; struc 96.8 0.00068 2.3E-08 54.1 3.5 27 30-61 21-47 (218)
186 2chg_A Replication factor C sm 96.8 0.0017 5.7E-08 50.8 5.6 39 16-61 24-62 (226)
187 1kjw_A Postsynaptic density pr 96.8 0.012 4E-07 49.2 11.0 24 31-62 104-127 (295)
188 2zan_A Vacuolar protein sortin 96.8 0.00083 2.8E-08 59.5 4.0 39 31-74 166-207 (444)
189 3u61_B DNA polymerase accessor 96.8 0.0016 5.6E-08 54.8 5.6 48 16-69 33-80 (324)
190 1njg_A DNA polymerase III subu 96.8 0.0014 4.7E-08 52.0 4.9 41 16-62 30-70 (250)
191 1htw_A HI0065; nucleotide-bind 96.8 0.0019 6.5E-08 48.9 5.3 29 28-61 29-57 (158)
192 1znw_A Guanylate kinase, GMP k 96.8 0.00098 3.3E-08 52.6 3.8 28 30-62 18-45 (207)
193 1sxj_A Activator 1 95 kDa subu 96.7 0.00095 3.2E-08 60.3 4.0 32 32-68 77-108 (516)
194 3uk6_A RUVB-like 2; hexameric 96.7 0.0018 6.1E-08 55.4 5.6 28 31-63 69-96 (368)
195 2v1u_A Cell division control p 96.7 0.0012 4.1E-08 56.6 4.5 41 16-61 26-68 (387)
196 1np6_A Molybdopterin-guanine d 96.7 0.00073 2.5E-08 52.1 2.8 24 33-61 7-30 (174)
197 2bjv_A PSP operon transcriptio 96.7 0.0015 5E-08 53.5 4.8 42 16-62 13-54 (265)
198 3te6_A Regulatory protein SIR3 96.7 0.00049 1.7E-08 58.3 1.9 28 29-61 42-69 (318)
199 2v9p_A Replication protein E1; 96.7 0.0017 6E-08 54.5 5.2 36 21-61 115-150 (305)
200 3hu3_A Transitional endoplasmi 96.7 0.0017 5.8E-08 58.3 5.4 35 30-69 236-270 (489)
201 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0015 5.2E-08 54.8 4.6 32 31-67 37-68 (324)
202 2z4s_A Chromosomal replication 96.6 0.0035 1.2E-07 55.5 6.8 37 20-61 118-154 (440)
203 3pxg_A Negative regulator of g 96.6 0.0029 9.8E-08 56.4 6.1 27 30-61 199-225 (468)
204 2qby_A CDC6 homolog 1, cell di 96.6 0.0019 6.6E-08 55.2 4.7 36 29-69 42-83 (386)
205 3pvs_A Replication-associated 96.5 0.0017 6E-08 57.5 4.3 31 33-68 51-81 (447)
206 2onk_A Molybdate/tungstate ABC 96.5 0.00096 3.3E-08 54.2 2.4 24 33-61 25-48 (240)
207 3b85_A Phosphate starvation-in 96.5 0.00086 3E-08 53.2 2.0 25 31-60 21-45 (208)
208 2qgz_A Helicase loader, putati 96.5 0.0041 1.4E-07 52.3 6.3 38 32-74 152-195 (308)
209 2qby_B CDC6 homolog 3, cell di 96.5 0.0029 9.8E-08 54.3 5.5 27 30-61 43-69 (384)
210 3e70_C DPA, signal recognition 96.5 0.0033 1.1E-07 53.4 5.6 27 30-61 127-153 (328)
211 4fcw_A Chaperone protein CLPB; 96.5 0.002 6.8E-08 53.7 4.3 24 33-61 48-71 (311)
212 1sxj_D Activator 1 41 kDa subu 96.5 0.0028 9.7E-08 53.7 5.1 24 34-62 60-83 (353)
213 1sxj_C Activator 1 40 kDa subu 96.5 0.0034 1.2E-07 53.3 5.6 22 35-61 49-70 (340)
214 2f1r_A Molybdopterin-guanine d 96.5 0.0005 1.7E-08 52.9 0.3 23 34-61 4-26 (171)
215 3m6a_A ATP-dependent protease 96.5 0.0019 6.5E-08 58.7 4.2 33 31-68 107-139 (543)
216 2dhr_A FTSH; AAA+ protein, hex 96.5 0.002 6.9E-08 57.9 4.1 32 32-68 64-95 (499)
217 2ehv_A Hypothetical protein PH 96.5 0.0018 6.3E-08 52.0 3.6 24 30-58 28-51 (251)
218 2r44_A Uncharacterized protein 96.4 0.0021 7.2E-08 54.3 4.1 29 33-66 47-75 (331)
219 3cf2_A TER ATPase, transitiona 96.4 0.0014 4.8E-08 62.1 2.9 35 30-69 509-543 (806)
220 1sxj_E Activator 1 40 kDa subu 96.4 0.0024 8.3E-08 54.3 4.2 22 35-61 39-60 (354)
221 1ypw_A Transitional endoplasmi 96.4 0.0022 7.4E-08 61.1 4.2 35 30-69 236-270 (806)
222 2i3b_A HCR-ntpase, human cance 96.4 0.0023 7.9E-08 49.9 3.5 23 34-61 3-25 (189)
223 3jvv_A Twitching mobility prot 96.3 0.0016 5.4E-08 56.0 2.7 26 31-61 122-147 (356)
224 2eyu_A Twitching motility prot 96.3 0.0029 9.9E-08 52.0 4.2 27 30-61 23-49 (261)
225 4a74_A DNA repair and recombin 96.3 0.0021 7.2E-08 51.0 3.3 27 30-61 23-49 (231)
226 2qm8_A GTPase/ATPase; G protei 96.3 0.0053 1.8E-07 52.3 5.8 37 20-61 43-79 (337)
227 3p32_A Probable GTPase RV1496/ 96.3 0.006 2E-07 52.3 6.2 28 29-61 76-103 (355)
228 1fnn_A CDC6P, cell division co 96.3 0.0052 1.8E-07 52.7 5.8 23 34-61 46-68 (389)
229 3pxi_A Negative regulator of g 96.3 0.0049 1.7E-07 58.2 6.1 35 30-69 199-243 (758)
230 1rj9_A FTSY, signal recognitio 96.3 0.003 1E-07 53.1 4.0 26 31-61 101-126 (304)
231 2cvh_A DNA repair and recombin 96.3 0.0044 1.5E-07 48.7 4.8 28 30-62 18-45 (220)
232 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0032 1.1E-07 49.9 3.9 26 31-61 22-47 (235)
233 1ojl_A Transcriptional regulat 96.2 0.0037 1.3E-07 52.5 4.4 41 16-61 9-49 (304)
234 1vma_A Cell division protein F 96.2 0.0034 1.2E-07 52.8 4.1 26 31-61 103-128 (306)
235 1iqp_A RFCS; clamp loader, ext 96.2 0.0051 1.7E-07 51.4 5.2 39 16-61 32-70 (327)
236 3tif_A Uncharacterized ABC tra 96.2 0.0025 8.7E-08 51.4 3.2 27 30-61 29-55 (235)
237 3b9q_A Chloroplast SRP recepto 96.2 0.0037 1.3E-07 52.5 4.2 26 31-61 99-124 (302)
238 1u0j_A DNA replication protein 96.2 0.0086 2.9E-07 49.2 6.2 28 30-62 102-129 (267)
239 3clv_A RAB5 protein, putative; 96.2 0.0042 1.4E-07 47.8 4.2 29 27-60 2-30 (208)
240 1sxj_B Activator 1 37 kDa subu 96.1 0.007 2.4E-07 50.5 5.6 39 16-61 28-66 (323)
241 2qen_A Walker-type ATPase; unk 96.1 0.0028 9.6E-08 53.4 3.1 32 33-69 32-63 (350)
242 2chq_A Replication factor C sm 96.1 0.0053 1.8E-07 51.1 4.7 23 34-61 40-62 (319)
243 3tqf_A HPR(Ser) kinase; transf 96.1 0.0037 1.3E-07 48.0 3.3 34 31-70 15-48 (181)
244 1jr3_A DNA polymerase III subu 96.1 0.006 2.1E-07 52.1 5.0 42 16-63 23-64 (373)
245 2cbz_A Multidrug resistance-as 96.1 0.0034 1.1E-07 50.8 3.2 27 30-61 29-55 (237)
246 2pcj_A ABC transporter, lipopr 96.1 0.0029 9.9E-08 50.7 2.7 27 30-61 28-54 (224)
247 1p9r_A General secretion pathw 96.1 0.0028 9.6E-08 55.7 2.9 35 21-62 158-192 (418)
248 1lw7_A Transcriptional regulat 96.0 0.0036 1.2E-07 53.9 3.4 28 32-64 170-197 (365)
249 2pjz_A Hypothetical protein ST 96.0 0.0021 7.3E-08 52.8 1.8 24 32-60 30-53 (263)
250 2orw_A Thymidine kinase; TMTK, 96.0 0.0045 1.5E-07 48.0 3.5 25 32-61 3-27 (184)
251 1b0u_A Histidine permease; ABC 96.0 0.0038 1.3E-07 51.3 3.2 27 30-61 30-56 (262)
252 1n0w_A DNA repair protein RAD5 96.0 0.0044 1.5E-07 49.6 3.5 26 30-60 22-47 (243)
253 1mv5_A LMRA, multidrug resista 96.0 0.004 1.4E-07 50.5 3.3 27 30-61 26-52 (243)
254 4g1u_C Hemin import ATP-bindin 96.0 0.0038 1.3E-07 51.4 3.1 27 30-61 35-61 (266)
255 3kl4_A SRP54, signal recogniti 96.0 0.0082 2.8E-07 52.9 5.4 26 31-61 96-121 (433)
256 2px0_A Flagellar biosynthesis 96.0 0.0046 1.6E-07 51.7 3.7 26 31-61 104-129 (296)
257 3gfo_A Cobalt import ATP-bindi 96.0 0.0037 1.3E-07 51.8 3.0 27 30-61 32-58 (275)
258 2og2_A Putative signal recogni 95.9 0.0058 2E-07 52.5 4.2 26 31-61 156-181 (359)
259 2olj_A Amino acid ABC transpor 95.9 0.0043 1.5E-07 51.0 3.2 27 30-61 48-74 (263)
260 1g8p_A Magnesium-chelatase 38 95.9 0.0054 1.8E-07 51.9 4.0 24 34-62 47-70 (350)
261 2ff7_A Alpha-hemolysin translo 95.9 0.0041 1.4E-07 50.6 3.0 27 30-61 33-59 (247)
262 2zu0_C Probable ATP-dependent 95.9 0.0054 1.9E-07 50.5 3.7 26 30-60 44-69 (267)
263 1cr0_A DNA primase/helicase; R 95.9 0.007 2.4E-07 50.3 4.5 28 29-61 32-59 (296)
264 1ypw_A Transitional endoplasmi 95.9 0.0024 8.3E-08 60.8 1.8 33 31-68 510-542 (806)
265 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0051 1.8E-07 50.1 3.5 26 30-60 27-52 (250)
266 1sgw_A Putative ABC transporte 95.9 0.0039 1.3E-07 49.6 2.7 27 30-61 33-59 (214)
267 1g6h_A High-affinity branched- 95.9 0.0043 1.5E-07 50.8 3.0 27 30-61 31-57 (257)
268 2ixe_A Antigen peptide transpo 95.9 0.0045 1.6E-07 51.1 3.2 27 30-61 43-69 (271)
269 2pze_A Cystic fibrosis transme 95.9 0.0045 1.6E-07 49.7 3.1 27 30-61 32-58 (229)
270 1ji0_A ABC transporter; ATP bi 95.9 0.0044 1.5E-07 50.2 3.0 27 30-61 30-56 (240)
271 2ghi_A Transport protein; mult 95.9 0.0046 1.6E-07 50.7 3.2 27 30-61 44-70 (260)
272 1vpl_A ABC transporter, ATP-bi 95.9 0.0048 1.6E-07 50.5 3.2 27 30-61 39-65 (256)
273 2r2a_A Uncharacterized protein 95.9 0.0061 2.1E-07 47.9 3.7 23 32-59 5-27 (199)
274 1fzq_A ADP-ribosylation factor 95.8 0.0068 2.3E-07 46.3 3.9 31 25-60 9-39 (181)
275 2dyk_A GTP-binding protein; GT 95.8 0.0067 2.3E-07 44.9 3.6 23 33-60 2-24 (161)
276 2p67_A LAO/AO transport system 95.8 0.011 3.8E-07 50.3 5.4 33 24-61 48-80 (341)
277 2yhs_A FTSY, cell division pro 95.8 0.0071 2.4E-07 54.1 4.2 27 30-61 291-317 (503)
278 2qi9_C Vitamin B12 import ATP- 95.8 0.0051 1.8E-07 50.1 3.1 27 30-61 24-50 (249)
279 2ewv_A Twitching motility prot 95.8 0.0069 2.4E-07 52.3 4.0 27 30-61 134-160 (372)
280 2wjg_A FEOB, ferrous iron tran 95.8 0.0069 2.4E-07 46.2 3.6 25 31-60 6-30 (188)
281 2yz2_A Putative ABC transporte 95.8 0.0054 1.8E-07 50.5 3.2 27 30-61 31-57 (266)
282 1kao_A RAP2A; GTP-binding prot 95.8 0.0068 2.3E-07 44.9 3.5 24 32-60 3-26 (167)
283 1z2a_A RAS-related protein RAB 95.7 0.0067 2.3E-07 45.1 3.4 25 31-60 4-28 (168)
284 2ihy_A ABC transporter, ATP-bi 95.7 0.0053 1.8E-07 50.9 3.1 27 30-61 45-71 (279)
285 1a5t_A Delta prime, HOLB; zinc 95.7 0.016 5.4E-07 49.2 6.1 43 16-64 9-51 (334)
286 1ky3_A GTP-binding protein YPT 95.7 0.007 2.4E-07 45.7 3.5 26 30-60 6-31 (182)
287 2wji_A Ferrous iron transport 95.7 0.0066 2.3E-07 45.6 3.3 22 33-59 4-25 (165)
288 1zu4_A FTSY; GTPase, signal re 95.7 0.015 5.2E-07 49.1 5.8 26 31-61 104-129 (320)
289 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0074 2.5E-07 57.0 4.3 31 33-68 489-519 (758)
290 1upt_A ARL1, ADP-ribosylation 95.7 0.0091 3.1E-07 44.6 4.1 25 30-59 5-29 (171)
291 2dr3_A UPF0273 protein PH0284; 95.7 0.007 2.4E-07 48.4 3.6 26 31-61 22-47 (247)
292 2nq2_C Hypothetical ABC transp 95.7 0.0058 2E-07 49.9 3.0 27 30-61 29-55 (253)
293 2f9l_A RAB11B, member RAS onco 95.7 0.0071 2.4E-07 46.9 3.4 23 33-60 6-28 (199)
294 2gj8_A MNME, tRNA modification 95.7 0.0066 2.3E-07 46.1 3.1 25 31-60 3-27 (172)
295 3dm5_A SRP54, signal recogniti 95.7 0.0081 2.8E-07 53.0 4.0 26 31-61 99-124 (443)
296 2atv_A RERG, RAS-like estrogen 95.6 0.0089 3E-07 46.1 3.9 28 28-60 24-51 (196)
297 1oix_A RAS-related protein RAB 95.6 0.0069 2.4E-07 46.8 3.2 24 32-60 29-52 (191)
298 3bwd_D RAC-like GTP-binding pr 95.6 0.0086 2.9E-07 45.3 3.7 27 29-60 5-31 (182)
299 3rlf_A Maltose/maltodextrin im 95.6 0.0076 2.6E-07 52.2 3.7 27 30-61 27-53 (381)
300 2wsm_A Hydrogenase expression/ 95.6 0.0087 3E-07 47.1 3.8 26 31-61 29-54 (221)
301 2ged_A SR-beta, signal recogni 95.6 0.0093 3.2E-07 45.7 3.9 26 30-60 46-71 (193)
302 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0066 2.3E-07 52.1 3.3 27 30-61 28-54 (359)
303 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0095 3.3E-07 51.3 4.3 29 29-62 30-58 (362)
304 2www_A Methylmalonic aciduria 95.6 0.0092 3.2E-07 51.1 4.2 26 31-61 73-98 (349)
305 1u8z_A RAS-related protein RAL 95.6 0.0082 2.8E-07 44.5 3.4 25 31-60 3-27 (168)
306 2yyz_A Sugar ABC transporter, 95.6 0.0079 2.7E-07 51.7 3.7 27 30-61 27-53 (359)
307 2ce2_X GTPase HRAS; signaling 95.6 0.0071 2.4E-07 44.7 3.1 24 32-60 3-26 (166)
308 3kta_A Chromosome segregation 95.6 0.0055 1.9E-07 46.9 2.5 24 34-62 28-51 (182)
309 2hxs_A RAB-26, RAS-related pro 95.6 0.0093 3.2E-07 44.9 3.7 26 30-60 4-29 (178)
310 2iwr_A Centaurin gamma 1; ANK 95.6 0.007 2.4E-07 45.7 3.0 27 29-60 4-30 (178)
311 2it1_A 362AA long hypothetical 95.6 0.0083 2.8E-07 51.6 3.7 27 30-61 27-53 (362)
312 2lkc_A Translation initiation 95.6 0.0099 3.4E-07 44.8 3.8 25 30-59 6-30 (178)
313 2fn4_A P23, RAS-related protei 95.6 0.0087 3E-07 45.1 3.5 26 30-60 7-32 (181)
314 1v43_A Sugar-binding transport 95.5 0.0087 3E-07 51.7 3.7 27 30-61 35-61 (372)
315 1z47_A CYSA, putative ABC-tran 95.5 0.0082 2.8E-07 51.5 3.5 27 30-61 39-65 (355)
316 2hf9_A Probable hydrogenase ni 95.5 0.0096 3.3E-07 47.0 3.7 27 30-61 36-62 (226)
317 1qvr_A CLPB protein; coiled co 95.5 0.01 3.5E-07 56.9 4.5 26 31-61 190-215 (854)
318 3tui_C Methionine import ATP-b 95.5 0.009 3.1E-07 51.4 3.7 27 30-61 52-78 (366)
319 2fna_A Conserved hypothetical 95.5 0.0066 2.3E-07 51.2 2.9 25 33-62 31-55 (357)
320 1c1y_A RAS-related protein RAP 95.5 0.0094 3.2E-07 44.3 3.4 23 32-59 3-25 (167)
321 2gza_A Type IV secretion syste 95.5 0.006 2.1E-07 52.5 2.6 28 30-62 173-200 (361)
322 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0081 2.8E-07 45.7 3.1 25 31-60 3-27 (189)
323 2nzj_A GTP-binding protein REM 95.5 0.0096 3.3E-07 44.7 3.5 24 31-59 3-26 (175)
324 1j8m_F SRP54, signal recogniti 95.5 0.019 6.4E-07 48.0 5.5 25 32-61 98-122 (297)
325 2b8t_A Thymidine kinase; deoxy 95.5 0.012 4E-07 47.1 4.1 27 30-61 10-36 (223)
326 1nrj_B SR-beta, signal recogni 95.5 0.011 3.7E-07 46.4 3.9 27 30-61 10-36 (218)
327 3tw8_B RAS-related protein RAB 95.5 0.008 2.7E-07 45.3 3.0 25 30-59 7-31 (181)
328 1nlf_A Regulatory protein REPA 95.5 0.0079 2.7E-07 49.6 3.1 26 31-61 29-54 (279)
329 3upu_A ATP-dependent DNA helic 95.5 0.0057 2E-07 54.3 2.4 23 34-61 47-69 (459)
330 1nij_A Hypothetical protein YJ 95.4 0.0047 1.6E-07 52.1 1.7 19 42-60 9-27 (318)
331 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0088 3E-07 45.7 3.1 27 29-60 4-30 (184)
332 3t5g_A GTP-binding protein RHE 95.4 0.0064 2.2E-07 46.1 2.2 25 30-59 4-28 (181)
333 3sop_A Neuronal-specific septi 95.4 0.008 2.7E-07 49.6 3.0 23 34-61 4-26 (270)
334 1vg8_A RAS-related protein RAB 95.4 0.01 3.5E-07 46.0 3.5 26 30-60 6-31 (207)
335 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0074 2.5E-07 53.7 2.9 28 29-61 135-162 (460)
336 1ek0_A Protein (GTP-binding pr 95.4 0.0087 3E-07 44.5 2.9 24 32-60 3-26 (170)
337 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0052 1.8E-07 55.2 1.9 25 33-62 42-66 (500)
338 1g29_1 MALK, maltose transport 95.4 0.0097 3.3E-07 51.4 3.5 27 30-61 27-53 (372)
339 1moz_A ARL1, ADP-ribosylation 95.4 0.0068 2.3E-07 46.0 2.3 24 30-58 16-39 (183)
340 2erx_A GTP-binding protein DI- 95.4 0.01 3.6E-07 44.2 3.3 23 32-59 3-25 (172)
341 2zej_A Dardarin, leucine-rich 95.4 0.0086 2.9E-07 45.8 2.8 22 33-59 3-24 (184)
342 2xkx_A Disks large homolog 4; 95.4 0.24 8.2E-06 46.5 13.2 24 31-62 530-553 (721)
343 3con_A GTPase NRAS; structural 95.3 0.0096 3.3E-07 45.5 3.1 25 31-60 20-44 (190)
344 1r6b_X CLPA protein; AAA+, N-t 95.3 0.021 7.1E-07 53.9 5.9 27 30-61 205-231 (758)
345 3oes_A GTPase rhebl1; small GT 95.3 0.0096 3.3E-07 46.2 3.1 27 29-60 21-47 (201)
346 2v3c_C SRP54, signal recogniti 95.3 0.0099 3.4E-07 52.4 3.4 25 32-61 99-123 (432)
347 2bbs_A Cystic fibrosis transme 95.3 0.0082 2.8E-07 50.0 2.8 27 30-61 62-88 (290)
348 3nh6_A ATP-binding cassette SU 95.3 0.0057 2E-07 51.4 1.8 27 30-61 78-104 (306)
349 1xx6_A Thymidine kinase; NESG, 95.3 0.016 5.6E-07 45.1 4.3 27 30-61 6-32 (191)
350 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.011 3.8E-07 50.0 3.5 32 32-68 123-156 (331)
351 3tvt_A Disks large 1 tumor sup 95.3 0.3 1E-05 40.6 12.2 24 31-62 99-122 (292)
352 3d31_A Sulfate/molybdate ABC t 95.3 0.0072 2.5E-07 51.7 2.4 27 30-61 24-50 (348)
353 1z08_A RAS-related protein RAB 95.3 0.011 3.7E-07 44.1 3.2 25 31-60 5-29 (170)
354 3ihw_A Centg3; RAS, centaurin, 95.3 0.014 4.9E-07 44.6 3.9 27 29-60 17-43 (184)
355 1gwn_A RHO-related GTP-binding 95.3 0.01 3.5E-07 46.5 3.1 27 29-60 25-51 (205)
356 1pui_A ENGB, probable GTP-bind 95.3 0.0061 2.1E-07 47.6 1.7 26 29-59 23-48 (210)
357 1z0j_A RAB-22, RAS-related pro 95.3 0.01 3.5E-07 44.2 3.0 25 31-60 5-29 (170)
358 3pxi_A Negative regulator of g 95.3 0.013 4.5E-07 55.3 4.3 23 34-61 523-545 (758)
359 1r2q_A RAS-related protein RAB 95.3 0.008 2.7E-07 44.7 2.3 24 31-59 5-28 (170)
360 1qhl_A Protein (cell division 95.2 0.0028 9.5E-08 51.0 -0.3 22 40-61 30-51 (227)
361 3q72_A GTP-binding protein RAD 95.2 0.011 3.7E-07 44.0 3.0 22 32-58 2-23 (166)
362 3q85_A GTP-binding protein REM 95.2 0.012 4.3E-07 43.8 3.4 22 33-59 3-24 (169)
363 3kkq_A RAS-related protein M-R 95.2 0.014 4.7E-07 44.3 3.6 27 29-60 15-41 (183)
364 2y8e_A RAB-protein 6, GH09086P 95.2 0.009 3.1E-07 44.9 2.5 25 30-59 12-36 (179)
365 2r8r_A Sensor protein; KDPD, P 95.2 0.018 6.1E-07 46.2 4.3 27 30-61 4-30 (228)
366 1pzn_A RAD51, DNA repair and r 95.2 0.011 3.7E-07 50.7 3.3 27 30-61 129-155 (349)
367 1yrb_A ATP(GTP)binding protein 95.2 0.017 5.7E-07 46.8 4.3 27 30-61 12-38 (262)
368 2o52_A RAS-related protein RAB 95.2 0.0094 3.2E-07 46.3 2.7 25 30-59 23-47 (200)
369 1svi_A GTP-binding protein YSX 95.2 0.012 4.3E-07 45.0 3.3 26 30-60 21-46 (195)
370 2a9k_A RAS-related protein RAL 95.2 0.013 4.6E-07 44.3 3.4 26 30-60 16-41 (187)
371 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.0054 1.8E-07 52.1 1.2 26 31-61 170-195 (330)
372 2bov_A RAla, RAS-related prote 95.2 0.015 5E-07 45.0 3.7 26 30-60 12-37 (206)
373 3gd7_A Fusion complex of cysti 95.2 0.012 4E-07 51.3 3.3 26 30-60 45-70 (390)
374 3e1s_A Exodeoxyribonuclease V, 95.2 0.0091 3.1E-07 54.6 2.8 25 32-61 204-228 (574)
375 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.015 5.1E-07 43.7 3.6 25 31-60 6-30 (177)
376 1zd9_A ADP-ribosylation factor 95.1 0.013 4.3E-07 45.0 3.2 27 29-60 19-45 (188)
377 1g16_A RAS-related protein SEC 95.1 0.013 4.3E-07 43.7 3.1 23 32-59 3-25 (170)
378 2efe_B Small GTP-binding prote 95.1 0.013 4.5E-07 44.2 3.2 26 30-60 10-35 (181)
379 1ksh_A ARF-like protein 2; sma 95.1 0.015 5E-07 44.3 3.5 26 30-60 16-41 (186)
380 1m2o_B GTP-binding protein SAR 95.1 0.013 4.3E-07 45.2 3.1 26 30-60 21-46 (190)
381 2j37_W Signal recognition part 95.1 0.015 5.3E-07 52.2 4.0 26 31-61 100-125 (504)
382 3bc1_A RAS-related protein RAB 95.1 0.013 4.5E-07 44.6 3.1 24 31-59 10-33 (195)
383 3k1j_A LON protease, ATP-depen 95.1 0.011 3.9E-07 54.3 3.1 26 32-62 60-85 (604)
384 3euj_A Chromosome partition pr 95.0 0.0091 3.1E-07 53.3 2.4 24 33-61 30-53 (483)
385 2gno_A DNA polymerase III, gam 95.0 0.022 7.5E-07 47.8 4.6 39 16-61 4-42 (305)
386 3t1o_A Gliding protein MGLA; G 95.0 0.015 5.1E-07 44.5 3.3 26 31-61 13-38 (198)
387 2oil_A CATX-8, RAS-related pro 95.0 0.014 5E-07 44.7 3.3 27 29-60 22-48 (193)
388 2g6b_A RAS-related protein RAB 95.0 0.014 4.8E-07 44.0 3.1 26 30-60 8-33 (180)
389 2p5s_A RAS and EF-hand domain 95.0 0.017 5.8E-07 44.7 3.7 27 29-60 25-51 (199)
390 2j0v_A RAC-like GTP-binding pr 95.0 0.015 5.3E-07 45.3 3.4 28 28-60 5-32 (212)
391 1oxx_K GLCV, glucose, ABC tran 95.0 0.0075 2.6E-07 51.7 1.6 27 30-61 29-55 (353)
392 3lxx_A GTPase IMAP family memb 95.0 0.015 5.1E-07 46.6 3.3 26 30-60 27-52 (239)
393 2atx_A Small GTP binding prote 95.0 0.01 3.6E-07 45.6 2.3 25 31-60 17-41 (194)
394 2b6h_A ADP-ribosylation factor 95.0 0.015 5.3E-07 44.8 3.3 26 29-59 26-51 (192)
395 1mh1_A RAC1; GTP-binding, GTPa 95.0 0.015 5.3E-07 43.9 3.3 25 31-60 4-28 (186)
396 3hr8_A Protein RECA; alpha and 95.0 0.016 5.4E-07 49.7 3.6 26 31-61 60-85 (356)
397 2gf0_A GTP-binding protein DI- 95.0 0.019 6.3E-07 44.1 3.8 25 30-59 6-30 (199)
398 1z06_A RAS-related protein RAB 95.0 0.017 5.8E-07 44.2 3.5 25 30-59 18-42 (189)
399 3pqc_A Probable GTP-binding pr 95.0 0.015 5.2E-07 44.3 3.2 25 31-60 22-46 (195)
400 2oap_1 GSPE-2, type II secreti 94.9 0.0094 3.2E-07 53.7 2.2 26 31-61 259-284 (511)
401 1z0f_A RAB14, member RAS oncog 94.9 0.016 5.5E-07 43.5 3.2 25 31-60 14-38 (179)
402 2bme_A RAB4A, RAS-related prot 94.9 0.014 4.7E-07 44.4 2.8 25 31-60 9-33 (186)
403 1zj6_A ADP-ribosylation factor 94.9 0.017 5.8E-07 44.1 3.4 26 29-59 13-38 (187)
404 3k53_A Ferrous iron transport 94.9 0.015 5.3E-07 47.6 3.3 24 32-60 3-26 (271)
405 3c5c_A RAS-like protein 12; GD 94.9 0.018 6.1E-07 44.1 3.5 26 30-60 19-44 (187)
406 1ls1_A Signal recognition part 94.9 0.021 7.1E-07 47.7 4.1 26 31-61 97-122 (295)
407 1r8s_A ADP-ribosylation factor 94.9 0.02 6.7E-07 42.4 3.6 22 34-60 2-23 (164)
408 2qu8_A Putative nucleolar GTP- 94.9 0.019 6.3E-07 45.6 3.6 25 30-59 27-51 (228)
409 2fh5_B SR-beta, signal recogni 94.9 0.018 6.2E-07 45.0 3.4 26 30-60 5-30 (214)
410 4bas_A ADP-ribosylation factor 94.8 0.017 5.9E-07 44.3 3.2 26 29-59 14-39 (199)
411 3reg_A RHO-like small GTPase; 94.8 0.017 5.7E-07 44.4 3.1 27 29-60 20-46 (194)
412 1qvr_A CLPB protein; coiled co 94.8 0.015 5.3E-07 55.6 3.5 24 33-61 589-612 (854)
413 2rcn_A Probable GTPase ENGC; Y 94.8 0.019 6.4E-07 49.3 3.5 25 31-60 214-238 (358)
414 2qag_B Septin-6, protein NEDD5 94.8 0.022 7.5E-07 50.0 4.0 32 24-60 32-65 (427)
415 2q3h_A RAS homolog gene family 94.7 0.021 7.2E-07 44.0 3.5 26 29-59 17-42 (201)
416 2zts_A Putative uncharacterize 94.7 0.024 8.1E-07 45.3 3.9 24 31-59 29-52 (251)
417 3ozx_A RNAse L inhibitor; ATP 94.7 0.019 6.3E-07 52.1 3.5 29 28-61 21-49 (538)
418 3ozx_A RNAse L inhibitor; ATP 94.7 0.01 3.5E-07 53.8 1.8 22 40-61 297-318 (538)
419 2h17_A ADP-ribosylation factor 94.7 0.016 5.4E-07 44.0 2.7 27 29-60 18-44 (181)
420 2j1l_A RHO-related GTP-binding 94.7 0.018 6.3E-07 45.1 3.1 25 30-59 32-56 (214)
421 1f6b_A SAR1; gtpases, N-termin 94.7 0.017 5.9E-07 44.8 2.9 25 30-59 23-47 (198)
422 1w5s_A Origin recognition comp 94.7 0.018 6.2E-07 49.7 3.3 28 31-61 49-76 (412)
423 2xtp_A GTPase IMAP family memb 94.7 0.02 6.9E-07 46.4 3.4 26 30-60 20-45 (260)
424 1h65_A Chloroplast outer envel 94.7 0.031 1E-06 45.8 4.5 29 27-60 34-62 (270)
425 1ko7_A HPR kinase/phosphatase; 94.7 0.032 1.1E-06 46.9 4.7 33 31-69 143-175 (314)
426 2xxa_A Signal recognition part 94.7 0.026 8.9E-07 49.8 4.2 26 31-61 99-124 (433)
427 2yv5_A YJEQ protein; hydrolase 94.7 0.022 7.7E-07 47.6 3.7 25 31-61 164-188 (302)
428 2cxx_A Probable GTP-binding pr 94.7 0.017 5.8E-07 44.0 2.7 23 33-60 2-24 (190)
429 2zr9_A Protein RECA, recombina 94.6 0.021 7.1E-07 48.9 3.5 26 31-61 60-85 (349)
430 2dpy_A FLII, flagellum-specifi 94.6 0.032 1.1E-06 49.3 4.7 36 21-62 147-182 (438)
431 2gf9_A RAS-related protein RAB 94.6 0.017 5.9E-07 44.1 2.7 25 31-60 21-45 (189)
432 3tkl_A RAS-related protein RAB 94.6 0.024 8.3E-07 43.3 3.5 25 31-60 15-39 (196)
433 1tq4_A IIGP1, interferon-induc 94.6 0.021 7.2E-07 50.0 3.5 25 31-60 68-92 (413)
434 3lda_A DNA repair protein RAD5 94.6 0.019 6.3E-07 50.1 3.1 24 31-59 177-200 (400)
435 3llu_A RAS-related GTP-binding 94.6 0.015 5.1E-07 44.9 2.3 28 28-60 16-43 (196)
436 1tf7_A KAIC; homohexamer, hexa 94.6 0.012 4.1E-07 53.2 2.0 27 30-61 279-305 (525)
437 2a5j_A RAS-related protein RAB 94.6 0.022 7.7E-07 43.6 3.3 26 30-60 19-44 (191)
438 2ew1_A RAS-related protein RAB 94.6 0.019 6.4E-07 44.8 2.9 26 30-60 24-49 (201)
439 1x3s_A RAS-related protein RAB 94.6 0.016 5.4E-07 44.3 2.4 26 30-60 13-38 (195)
440 3dz8_A RAS-related protein RAB 94.6 0.023 7.8E-07 43.5 3.3 26 31-61 22-47 (191)
441 3a1s_A Iron(II) transport prot 94.6 0.019 6.6E-07 46.8 3.0 25 30-59 3-27 (258)
442 1v5w_A DMC1, meiotic recombina 94.5 0.026 9E-07 48.1 3.9 26 30-60 120-145 (343)
443 3def_A T7I23.11 protein; chlor 94.5 0.039 1.3E-06 44.9 4.8 35 21-60 25-59 (262)
444 2obl_A ESCN; ATPase, hydrolase 94.5 0.028 9.7E-07 48.0 4.1 36 21-62 61-96 (347)
445 3lxw_A GTPase IMAP family memb 94.5 0.023 7.7E-07 46.0 3.3 26 30-60 19-44 (247)
446 4gzl_A RAS-related C3 botulinu 94.5 0.023 8E-07 44.2 3.3 26 30-60 28-53 (204)
447 2fg5_A RAB-22B, RAS-related pr 94.5 0.018 6.3E-07 44.2 2.6 26 30-60 21-46 (192)
448 3j16_B RLI1P; ribosome recycli 94.5 0.015 5.2E-07 53.5 2.4 23 34-61 380-402 (608)
449 2h57_A ADP-ribosylation factor 94.5 0.018 6.2E-07 44.1 2.5 26 30-60 19-44 (190)
450 3cph_A RAS-related protein SEC 94.5 0.028 9.7E-07 43.6 3.7 26 30-60 18-43 (213)
451 3cpj_B GTP-binding protein YPT 94.4 0.025 8.7E-07 44.6 3.3 27 29-60 10-36 (223)
452 2bcg_Y Protein YP2, GTP-bindin 94.4 0.023 7.7E-07 44.1 2.9 25 31-60 7-31 (206)
453 1zbd_A Rabphilin-3A; G protein 94.3 0.029 9.8E-07 43.3 3.4 24 32-60 8-31 (203)
454 2ffh_A Protein (FFH); SRP54, s 94.3 0.033 1.1E-06 49.0 4.0 26 31-61 97-122 (425)
455 1yqt_A RNAse L inhibitor; ATP- 94.3 0.028 9.4E-07 51.0 3.7 27 30-61 45-71 (538)
456 1u0l_A Probable GTPase ENGC; p 94.3 0.027 9.3E-07 47.0 3.3 25 31-60 168-192 (301)
457 2x77_A ADP-ribosylation factor 94.2 0.019 6.6E-07 43.8 2.2 24 30-58 20-43 (189)
458 1w36_D RECD, exodeoxyribonucle 94.2 0.021 7.1E-07 52.6 2.7 25 32-61 164-188 (608)
459 3cbq_A GTP-binding protein REM 94.2 0.023 7.7E-07 44.0 2.6 24 31-59 22-45 (195)
460 3kfv_A Tight junction protein 94.2 0.23 7.8E-06 41.6 8.8 89 33-160 146-236 (308)
461 1knx_A Probable HPR(Ser) kinas 94.2 0.023 7.9E-07 47.7 2.8 33 31-69 146-178 (312)
462 1u94_A RECA protein, recombina 94.2 0.034 1.2E-06 47.7 3.9 33 31-68 62-99 (356)
463 2fv8_A H6, RHO-related GTP-bin 94.2 0.027 9.1E-07 43.9 3.0 25 31-60 24-48 (207)
464 1ega_A Protein (GTP-binding pr 94.2 0.026 8.8E-07 47.2 3.0 26 30-60 6-31 (301)
465 3b5x_A Lipid A export ATP-bind 94.2 0.029 1E-06 51.3 3.6 28 29-61 366-393 (582)
466 3q3j_B RHO-related GTP-binding 94.2 0.036 1.2E-06 43.5 3.7 26 30-60 25-50 (214)
467 2z43_A DNA repair and recombin 94.1 0.031 1E-06 47.2 3.4 26 31-61 106-131 (324)
468 3bh0_A DNAB-like replicative h 94.1 0.062 2.1E-06 45.1 5.2 27 30-61 66-92 (315)
469 2g3y_A GTP-binding protein GEM 94.1 0.033 1.1E-06 44.0 3.3 24 31-59 36-59 (211)
470 2il1_A RAB12; G-protein, GDP, 94.1 0.032 1.1E-06 42.8 3.2 24 31-59 25-48 (192)
471 2gco_A H9, RHO-related GTP-bin 94.1 0.028 9.5E-07 43.5 2.8 25 31-60 24-48 (201)
472 2r6a_A DNAB helicase, replicat 94.1 0.06 2E-06 47.6 5.3 27 30-61 201-227 (454)
473 3io5_A Recombination and repai 94.0 0.022 7.4E-07 48.1 2.2 23 34-61 30-52 (333)
474 3j16_B RLI1P; ribosome recycli 94.0 0.036 1.2E-06 51.0 3.9 28 29-61 100-127 (608)
475 2fu5_C RAS-related protein RAB 94.0 0.019 6.4E-07 43.5 1.7 24 31-59 7-30 (183)
476 3szr_A Interferon-induced GTP- 94.0 0.023 7.8E-07 52.4 2.5 25 31-60 44-68 (608)
477 2f7s_A C25KG, RAS-related prot 94.0 0.033 1.1E-06 43.5 3.1 25 30-59 23-47 (217)
478 3b60_A Lipid A export ATP-bind 94.0 0.026 8.9E-07 51.7 2.8 27 30-61 367-393 (582)
479 1z6t_A APAF-1, apoptotic prote 93.9 0.071 2.4E-06 48.5 5.6 24 31-59 146-169 (591)
480 2i1q_A DNA repair and recombin 93.9 0.034 1.2E-06 46.7 3.3 25 31-60 97-121 (322)
481 1tf7_A KAIC; homohexamer, hexa 93.9 0.033 1.1E-06 50.3 3.3 31 22-57 28-59 (525)
482 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.05 1.7E-06 40.4 3.7 24 32-60 23-46 (149)
483 2yl4_A ATP-binding cassette SU 93.8 0.028 9.5E-07 51.6 2.8 27 30-61 368-394 (595)
484 3f9v_A Minichromosome maintena 93.8 0.014 4.8E-07 53.6 0.8 26 34-64 329-354 (595)
485 2cjw_A GTP-binding protein GEM 93.8 0.041 1.4E-06 42.4 3.4 24 32-60 6-29 (192)
486 3qf7_A RAD50; ABC-ATPase, ATPa 93.8 0.026 8.8E-07 48.6 2.4 20 34-58 25-44 (365)
487 3b1v_A Ferrous iron uptake tra 93.8 0.042 1.4E-06 45.2 3.6 24 32-60 3-26 (272)
488 2j9r_A Thymidine kinase; TK1, 93.8 0.059 2E-06 42.7 4.2 27 30-61 26-52 (214)
489 3iby_A Ferrous iron transport 93.8 0.034 1.2E-06 45.3 2.9 23 33-60 2-24 (256)
490 2hup_A RAS-related protein RAB 93.7 0.04 1.4E-06 42.7 3.2 25 31-60 28-52 (201)
491 3qf4_B Uncharacterized ABC tra 93.7 0.031 1.1E-06 51.3 2.9 27 30-61 379-405 (598)
492 3i8s_A Ferrous iron transport 93.6 0.043 1.5E-06 45.1 3.3 25 31-60 2-26 (274)
493 1ni3_A YCHF GTPase, YCHF GTP-b 93.6 0.042 1.4E-06 47.7 3.4 26 29-59 17-42 (392)
494 2qnr_A Septin-2, protein NEDD5 93.6 0.033 1.1E-06 46.5 2.7 23 32-59 18-40 (301)
495 3gj0_A GTP-binding nuclear pro 93.6 0.036 1.2E-06 43.6 2.6 28 29-61 12-40 (221)
496 3iev_A GTP-binding protein ERA 93.5 0.04 1.4E-06 46.1 3.0 28 28-60 6-33 (308)
497 4dhe_A Probable GTP-binding pr 93.5 0.022 7.5E-07 44.7 1.3 26 30-60 27-52 (223)
498 3r7w_A Gtpase1, GTP-binding pr 93.5 0.049 1.7E-06 45.5 3.5 25 31-60 2-26 (307)
499 1yqt_A RNAse L inhibitor; ATP- 93.5 0.047 1.6E-06 49.5 3.6 26 31-61 311-336 (538)
500 1mky_A Probable GTP-binding pr 93.4 0.051 1.7E-06 47.8 3.6 25 31-60 179-203 (439)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.1e-43 Score=288.95 Aligned_cols=211 Identities=46% Similarity=0.829 Sum_probs=183.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
..|+..++ |+|||||||+|+.|+++||++++++++++++.+..++++|+.+++++.+|..+|++++..++.+++.
T Consensus 7 ~~~~~~~~-----G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~ 81 (230)
T 3gmt_A 7 HHMRLILL-----GAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLK 81 (230)
T ss_dssp --CEEEEE-----CCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cccceeeE-----CCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 46788899 9999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
..++.+|||+||||++..|++.|.+ .+..++.+|+|++|++++.+|+..|+.|+.||+.|+..|+||..+++|+.|
T Consensus 82 ~~~~~~g~ILDGfPRt~~Qa~~L~~----~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~ 157 (230)
T 3gmt_A 82 EADCANGYLFDGFPRTIAQADAMKE----AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVT 157 (230)
T ss_dssp SGGGTTCEEEESCCCSHHHHHHHHH----TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTT
T ss_pred CcccCCCeEecCCCCcHHHHHHHHH----hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCc
Confidence 8767789999999999999987653 456789999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhC-----------CcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----------GIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~-----------~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+++|.+|.+|+++.+++|+..|++...++.+||.+. +.++.|||+.++++|++.|.++|.
T Consensus 158 g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~ 228 (230)
T 3gmt_A 158 GEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV 228 (230)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999973 789999999999999999998875
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=5e-43 Score=282.70 Aligned_cols=204 Identities=50% Similarity=0.855 Sum_probs=193.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |||||||+|+|+.|+++||++||++++++|+++..++++|..+++++.+|..+|++++..++.+++..
T Consensus 1 M~Iil~-----GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~- 74 (206)
T 3sr0_A 1 MILVFL-----GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK- 74 (206)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-
Confidence 678888 99999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.++||+||||++..|++.|...+...+..++.+|+|+||++++.+|+..|+.|+.||+.|+..++||. |++
T Consensus 75 --~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~ 145 (206)
T 3sr0_A 75 --HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGV 145 (206)
T ss_dssp --SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTC
T ss_pred --CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCc
Confidence 35899999999999999999998888889999999999999999999999999999999999999985 567
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
++.+|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+++|.++|.+
T Consensus 146 ~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 146 KVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp CCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred eecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 78899999999999999999999999999999999999999999999999999999863
No 3
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-41 Score=281.94 Aligned_cols=239 Identities=49% Similarity=0.893 Sum_probs=222.9
Q ss_pred cccCCCCchhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHH
Q 025529 7 ANLEDVPSVDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKA 86 (251)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i 86 (251)
+++.+.++.+++.++.+++.+...++++|+|+ |||||||||+|+.|++++|++++++++++++.+..+++.|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~-----G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i 78 (243)
T 3tlx_A 4 ENLENFSTIDLLNELKRRYACLSKPDGRYIFL-----GAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKI 78 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSCCEEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHHhccCCCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHH
Confidence 45677899999999999998777789999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 87 KEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 87 ~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
++++.+|..+++..+..++...+....+.++||+||||++..+...|.+.+...+..|+.+|+|++|++++.+|+..|+.
T Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~ 158 (243)
T 3tlx_A 79 KNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLI 158 (243)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence 99999999999999999999988776667899999999999999999888887788899999999999999999999999
Q ss_pred CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529 167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246 (251)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~ 246 (251)
|+.||+.||..|+||..++.|+.|++++..|.+++.+.+++|+..|+..+.++.+||...+.++.||++.++++|++.|.
T Consensus 159 ~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~ 238 (243)
T 3tlx_A 159 HKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKIS 238 (243)
T ss_dssp ETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHH
T ss_pred CcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 025529 247 KALS 250 (251)
Q Consensus 247 ~~l~ 250 (251)
++|+
T Consensus 239 ~~l~ 242 (243)
T 3tlx_A 239 QHID 242 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9885
No 4
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=6.8e-38 Score=254.63 Aligned_cols=213 Identities=46% Similarity=0.818 Sum_probs=201.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+|+.|++++|++++++|+++++.+.++++.+..+++++..+..+++..+..++...+...
T Consensus 1 m~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 75 (216)
T 3dl0_A 1 MNLVLM-----GLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD 75 (216)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Confidence 457777 999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
....++|+||+|.+..+...+...+...+..|+.+|+|++|++++.+|+..|+.|+.||+.|+..++||..++.|+.|+.
T Consensus 76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3dl0_A 76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence 66789999999999999999888887777889999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
++..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++++.|.+.|+
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp BEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988889999999999999999999886
No 5
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=3.1e-37 Score=250.62 Aligned_cols=214 Identities=45% Similarity=0.810 Sum_probs=201.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+|+.|++++|++++++|+++++.+.++++.+..+++++..+..+++..+..++...+...
T Consensus 1 m~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 75 (216)
T 3fb4_A 1 MNIVLM-----GLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKD 75 (216)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Confidence 456777 999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
....++|+||+|.+..+...+...+...+..++.+|+|++|++++.+|+..|+.|+.+|+.|+..++||..++.|+.|++
T Consensus 76 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3fb4_A 76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG 155 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence 66779999999999999998888877777889999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
++..|.+++.+.+++|+..|+....++.+||.+.+.++.||++.+++++++.|.+.|++
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 156 ELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp BEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988999999999999999999998853
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.9e-37 Score=248.83 Aligned_cols=216 Identities=50% Similarity=0.903 Sum_probs=196.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
+.++++|+|+ |+|||||||+++.|++++|++++++|+++++....+++.|..+++++..|..+++.....++...
T Consensus 2 ~~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~ 76 (217)
T 3be4_A 2 NSKKHNLILI-----GAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEK 76 (217)
T ss_dssp GGGCCEEEEE-----ECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCceEEEEE-----CCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 3456889999 99999999999999999999999999999998888899999999999999999999999998888
Q ss_pred HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
+.......++|+||||++..+...+..++...+..|+.+|+|++|++++.+|+..|+.|+.+|+.||..++||..++.|+
T Consensus 77 l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 156 (217)
T 3be4_A 77 FDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDD 156 (217)
T ss_dssp HHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred HhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccc
Confidence 77666677999999999998888887766666678999999999999999999999989999999999999999999999
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
.|+.++..|.++..+.+++|+..|++...++.++|.+.+.++.||++.++++|++.|.+.|
T Consensus 157 ~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 157 VTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 9999999998889999999999999999999999987778999999999999999998764
No 7
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=5.2e-37 Score=248.76 Aligned_cols=186 Identities=31% Similarity=0.526 Sum_probs=167.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
++++.|+|+ |||||||+|+|+.|+++||++||++++++|+++..++++|..+++++..|..+|++++.+++.+++
T Consensus 27 ~k~kiI~ll-----GpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 27 AKAKVIFVL-----GGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp TSCEEEEEE-----CCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 567778889 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 110 KKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 110 ~~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
... ...+|||+||||++..|+..|... ...++.+|+|+||++++.+|+..|+.+
T Consensus 102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~----~~~~~~vi~l~v~~e~~~~Rl~~R~~~--------------------- 156 (217)
T 3umf_A 102 IKLVDKNCHFLIDGYPRELDQGIKFEKE----VCPCLCVINFDVSEEVMRKRLLKRAET--------------------- 156 (217)
T ss_dssp HHHTTTCSEEEEETBCSSHHHHHHHHHH----TCCCSEEEEEECCHHHHHHHHSCC------------------------
T ss_pred hhccccccCcccccCCCcHHHHHHHHHh----CCccCEEEeccCCHHHHHHHHhccccc---------------------
Confidence 654 455799999999999999988764 367899999999999999999998521
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhcC
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALSA 251 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~~ 251 (251)
..|.+|+++.+++|+..|++...++.+||.+.+.++.|||+.++++|+++|.++|++
T Consensus 157 ------~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 157 ------SNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 246788899999999999999999999999999999999999999999999998864
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=4.1e-35 Score=241.18 Aligned_cols=217 Identities=53% Similarity=0.954 Sum_probs=197.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
+.++++|+|+ |+|||||||+++.|+++|++.++++++++++.+..+++.+..+++++..+..++++....++...
T Consensus 13 ~~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~ 87 (233)
T 1ak2_A 13 SPKGVRAVLL-----GPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKN 87 (233)
T ss_dssp -CCCCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 4567889999 99999999999999999999999999999998888899999999999999999999999999888
Q ss_pred HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
+.......++|+||||++..+...|.+++...+..++.+|+|++|++++.+|+..|..|+.+|+.|+..|.||..++.++
T Consensus 88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 167 (233)
T 1ak2_A 88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDD 167 (233)
T ss_dssp HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCT
T ss_pred HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccc
Confidence 87655557899999999998888887776665667899999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.|+.++..|.++..+.+++|+..|+....++.++|...+.++.||++.++++|++.|.+.|+
T Consensus 168 ~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 168 ITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229 (233)
T ss_dssp TTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 88988888988889999999999999999999999877789999999999999999998874
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=1.9e-34 Score=235.01 Aligned_cols=216 Identities=52% Similarity=0.926 Sum_probs=191.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
+++++|+|+ |+|||||||+++.|+++++++++++|+++++....+++.|..+++++..|..+++..+..++...+
T Consensus 2 ~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 2 SESIRMVLI-----GPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp -CCCEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 467889999 999999999999999999999999999999988889999999999999999999999888888877
Q ss_pred c-CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 110 K-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 110 ~-~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
. ......++|+||||++..+...+.+++...+..|+.+|+|++|++++.+|+..|..++.+|+.|+..++||..++.+.
T Consensus 77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~ 156 (220)
T 1aky_A 77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDD 156 (220)
T ss_dssp HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccc
Confidence 6 433456899999999998888887776666778999999999999999999999889999999999999998875333
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.++..|.++..+.+++|+..|+....++.++|...+.++.||++.++++|++.|.+.|+
T Consensus 157 ~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp TTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 33456778888889999999999999999999999877789999999999999999999885
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=1.6e-34 Score=234.63 Aligned_cols=209 Identities=47% Similarity=0.831 Sum_probs=189.4
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+++.|++++|++++++|+++++.+..+++.|..+++++..+..+++..+..++...+...
T Consensus 1 m~I~l~-----G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 75 (214)
T 1e4v_A 1 MRIILL-----GAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE 75 (214)
T ss_dssp CEEEEE-----ESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 467777 999999999999999999999999999999988888999999999999999999999999998888765
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 192 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (251)
.+..++|+||||++..+...|. ..+..|+.+|+|++|++++.+|+..|..++.+|+.|+..+.||..++.|+.|+.
T Consensus 76 ~~~~~~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~ 151 (214)
T 1e4v_A 76 DCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGE 151 (214)
T ss_dssp GGGGCEEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCCEEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCcccccccccc
Confidence 5556899999999988776553 344678999999999999999999998889999999999999999999999999
Q ss_pred CcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhC-----CcEEEEcCCCChhHHHHHHHHHhc
Q 025529 193 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKK-----GIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 193 ~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~-----~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
++..|.++..+.+++|+..|+..+.++.++|.+. +.++.|||+.++++|++.|.+.|+
T Consensus 152 ~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l~ 214 (214)
T 1e4v_A 152 ELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG 214 (214)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999864 579999999999999999998873
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=2.1e-34 Score=235.45 Aligned_cols=212 Identities=33% Similarity=0.580 Sum_probs=188.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~ 112 (251)
|+|+|+ |+|||||||+++.|++++|++++++|+++++.+..+++.|..+++++..|..+++..+..++...+...
T Consensus 1 m~I~l~-----G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 75 (223)
T 2xb4_A 1 MNILIF-----GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK 75 (223)
T ss_dssp CEEEEE-----CCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc
Confidence 457777 999999999999999999999999999999877778889999999999999999998888887776543
Q ss_pred CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC-CCceecccCCCCCCCC-CCCCC
Q 025529 113 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS-SGRTYHTKFAPPKVPG-VDDVT 190 (251)
Q Consensus 113 ~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~-~~~~~~~~~~~p~~~~-~~~~~ 190 (251)
. ..++|+||+|++..+...|..++...+..|+.+|+|++|++++.+|+..|..++. ||+.|+..++||..++ +|+.|
T Consensus 76 ~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~ 154 (223)
T 2xb4_A 76 G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVC 154 (223)
T ss_dssp C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTT
T ss_pred c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccc
Confidence 3 5689999999998888877766555667899999999999999999999987766 9999999999999988 89999
Q ss_pred CCCcccCCCCcHH-HHHHHHHHHHhccHHHHH---HHhh-----CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAA-VLKSRLEAFHKQTEPVID---YYSK-----KGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~-~~~~r~~~y~~~~~~~~~---~~~~-----~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
+.++..|.+++.+ .+++|+..|++...++.+ +|.. .+.++.||++.++++|++.|.+.|+
T Consensus 155 ~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l~ 223 (223)
T 2xb4_A 155 GGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQLA 223 (223)
T ss_dssp CCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence 9999999888888 999999999999989898 8886 5779999999999999999998873
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=5.5e-32 Score=221.56 Aligned_cols=209 Identities=41% Similarity=0.737 Sum_probs=184.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
.++++|+|+ |+|||||||+++.|++++|+.++++|++++.....+++.|..+++++..|..+++.....++...+
T Consensus 5 ~~~~~I~l~-----G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l 79 (227)
T 1zd8_A 5 ARLLRAVIM-----GAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHEL 79 (227)
T ss_dssp --CCEEEEE-----ECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred ccCcEEEEE-----CCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 356789999 999999999999999999999999999999988888999999999999998899888877777766
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
... ...++|+|++|.+..+...+..+ ..++.+|+|++|++++.+|+..|+.++.+|+.|+..++||..++.|+.
T Consensus 80 ~~~-~~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~ 153 (227)
T 1zd8_A 80 KNL-TQYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDL 153 (227)
T ss_dssp HTC-TTSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTT
T ss_pred hcc-cCCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCccccccc
Confidence 543 34689999999988776655432 457899999999999999999998888889999999999999999999
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
|+.++..|.++..+.+++|+..|+....++.++|...+.++.||++ +++++++.|.+.|.
T Consensus 154 ~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~ 213 (227)
T 1zd8_A 154 TGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQ 213 (227)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHT
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHH
Confidence 9999999988889999999999999999999999877789999999 99999999998875
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.97 E-value=5.4e-30 Score=208.94 Aligned_cols=205 Identities=35% Similarity=0.675 Sum_probs=174.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+++.|+|+ |+|||||||+++.|++++++.++++|++++.....+++.|..+++++.+|..+++..+..++...+.
T Consensus 4 ~~~~I~l~-----G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~ 78 (222)
T 1zak_A 4 DPLKVMIS-----GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLR 78 (222)
T ss_dssp CSCCEEEE-----ESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 56789999 9999999999999999999999999999999888888999999999999999999888887776654
Q ss_pred CCCC-CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 111 KPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 111 ~~~~-~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
.... ..++|+||+|++..+...+. ..+..|+++|+|++|++++.+|+..|..|+.+|+.|+..+.||..++.+
T Consensus 79 ~~~~~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~-- 152 (222)
T 1zak_A 79 QPDAQENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA-- 152 (222)
T ss_dssp SHHHHHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG--
T ss_pred hccccCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc--
Confidence 4221 35799999999987666544 2345689999999999999999999988899999999999999766553
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++..|.++..+.+++|+..|+....++.++|.. .++.||++.+++++++.|.+.|.
T Consensus 153 --~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~ 209 (222)
T 1zak_A 153 --SRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLG 209 (222)
T ss_dssp --GGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHH
T ss_pred --cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHH
Confidence 4566677777889999999999888888887754 58899999999999999998774
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.96 E-value=7.9e-27 Score=187.27 Aligned_cols=184 Identities=37% Similarity=0.716 Sum_probs=158.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
+..++.|+|+ |+|||||||+|+.|+++++++++++|+++++.+..+++.+..+++++..+..+++.....++...
T Consensus 17 ~~~~~~I~l~-----G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~ 91 (201)
T 2cdn_A 17 RGSHMRVLLL-----GPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDR 91 (201)
T ss_dssp CCSCCEEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4678899999 99999999999999999999999999999998888889999999999999889998888888777
Q ss_pred HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
+.......++|+||+|.+..+...+..++...+..|+.+|+|++|++++.+|+..|.
T Consensus 92 ~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------------------- 148 (201)
T 2cdn_A 92 LNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----------------------- 148 (201)
T ss_dssp TTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-----------------------
T ss_pred HhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC-----------------------
Confidence 665444568999999999988888877776666778999999999999999999873
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
|++++.+.+++|+..|.....++.++| ...++.||++.+++++++.|.+.|+
T Consensus 149 --------r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 149 --------RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp --------CTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred --------CCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 234567789999999988887777777 3468889999999999999999875
No 15
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=1e-25 Score=178.24 Aligned_cols=183 Identities=37% Similarity=0.665 Sum_probs=153.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+++.|+++ |+|||||||+++.|++++|++++++|++++..+..+++.+..+++++..+...++......+...+.
T Consensus 3 ~g~~I~l~-----G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~ 77 (186)
T 3cm0_A 3 VGQAVIFL-----GPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA 77 (186)
T ss_dssp CEEEEEEE-----CCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc
Confidence 56788888 9999999999999999999999999999998888888899999999999988898888887776653
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
. ++|+||++....+...+..++...+..|+.+|+|++|++++.+|+..|...
T Consensus 78 ~-----~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~----------------------- 129 (186)
T 3cm0_A 78 E-----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL----------------------- 129 (186)
T ss_dssp S-----EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH-----------------------
T ss_pred C-----CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc-----------------------
Confidence 2 499999999988877776666555556899999999999999999877310
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|.++..+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 130 ----~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 130 ----EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp ----HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 01245667889999999988878888888776678899999999999999998874
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.94 E-value=5.9e-25 Score=174.52 Aligned_cols=186 Identities=30% Similarity=0.460 Sum_probs=155.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
.++.|+|. |+|||||||+++.|++++|++++++|++++....++++.+..+++++..+...++.....++...+.
T Consensus 5 ~~~~I~l~-----G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 79 (194)
T 1qf9_A 5 KPNVVFVL-----GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID 79 (194)
T ss_dssp CCEEEEEE-----ESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred cCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 45678888 9999999999999999999999999999998887888999999999999988888888888877765
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
.. ...++|+||+|....+...+...+.. +..++++|+|++|++++.+|+..|...
T Consensus 80 ~~-~~~~vi~d~~~~~~~~~~~~~~~~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~----------------------- 134 (194)
T 1qf9_A 80 AN-QGKNFLVDGFPRNEENNNSWEENMKD-FVDTKFVLFFDCPEEVMTQRLLKRGES----------------------- 134 (194)
T ss_dssp TS-TTCCEEEETCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHTT-----------------------
T ss_pred hc-CCCCEEEeCcCCCHHHHHHHHHHHhc-cCCCCEEEEEECCHHHHHHHHHhcccc-----------------------
Confidence 54 45689999999998887776655432 236889999999999999999987410
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|.++..+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 135 ----~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~ 190 (194)
T 1qf9_A 135 ----SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK 190 (194)
T ss_dssp ----SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 01346677899999999998888888888776778899999999999999998874
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.94 E-value=5.8e-25 Score=175.17 Aligned_cols=184 Identities=35% Similarity=0.587 Sum_probs=152.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+++.|+|+ |+|||||||+++.|++++|++++++|++++.....+++.+..+++.+..|..++......++...+.
T Consensus 8 ~~~~I~l~-----G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~ 82 (196)
T 2c95_A 8 KTNIIFVV-----GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMV 82 (196)
T ss_dssp TSCEEEEE-----ECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 56789999 9999999999999999999999999999999888888999999999988888888887777766554
Q ss_pred C-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 111 K-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 111 ~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
. ...+.++|+||+|....+...+...+ ..++.+|+|++|++++.+|+..|....
T Consensus 83 ~~~~~~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~--------------------- 137 (196)
T 2c95_A 83 AKVNTSKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRGETS--------------------- 137 (196)
T ss_dssp HHTTTCSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHTSS---------------------
T ss_pred hccccCCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccCCcC---------------------
Confidence 3 22456899999999987776555432 457899999999999999998774110
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.+.++..+.+++|+..|+....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus 138 ------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~ 192 (196)
T 2c95_A 138 ------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192 (196)
T ss_dssp ------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence 1234567788999999999888888888766678889999999999999998774
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.93 E-value=2.1e-24 Score=171.53 Aligned_cols=187 Identities=27% Similarity=0.499 Sum_probs=149.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
+++.|+|. |+|||||||+|+.|++++|+++++.|++++....+ .+.++..+++++..|...++.....++...+
T Consensus 2 ~~~~I~l~-----G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 76 (196)
T 1tev_A 2 KPLVVFVL-----GGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREM 76 (196)
T ss_dssp -CEEEEEE-----CCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 35678888 99999999999999999999999999999887654 5677888888888888888876665554433
Q ss_pred c----CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 110 K----KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 110 ~----~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
. .......+|+||+|.+..+...+...+.. ...++.+|+|++|++++.+|+..|...
T Consensus 77 ~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------ 137 (196)
T 1tev_A 77 DQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERGKS------------------ 137 (196)
T ss_dssp HHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHHHT------------------
T ss_pred HhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccccc------------------
Confidence 2 22234679999999998877766554432 246789999999999999999877410
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..|++++.+.+++++..|.....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus 138 ---------~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 138 ---------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193 (196)
T ss_dssp ---------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 12355667889999999999999999999877788899999999999999998875
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.93 E-value=2e-24 Score=173.39 Aligned_cols=186 Identities=27% Similarity=0.543 Sum_probs=149.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH-cCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDE 107 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~ 107 (251)
+.+++.|+|+ |+|||||||+++.|++++|++++++|++++.... .++..+..+++++..|...++.....++..
T Consensus 12 ~~~~~~I~l~-----G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~ 86 (203)
T 1ukz_A 12 PDQVSVIFVL-----GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN 86 (203)
T ss_dssp TTTCEEEEEE-----CSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCCcEEEEE-----CCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 3456778888 9999999999999999999999999999988754 567788889998888888888777776665
Q ss_pred HHcCC-CCC-CceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 108 AMKKP-SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 108 ~l~~~-~~~-~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
.+... ..+ .++|+||+|++..+...+...+ ..++.+|+|++|++++.+|+..|...
T Consensus 87 ~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~~~------------------ 144 (203)
T 1ukz_A 87 AISDNVKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERGKT------------------ 144 (203)
T ss_dssp HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHHHH------------------
T ss_pred HHHhhhccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcccc------------------
Confidence 54321 122 5799999999988777655432 35799999999999999999877310
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.+++.+.+++|+..|.....++.++|...+.++.||++.+++++++.|.+.|+
T Consensus 145 ---------~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 145 ---------SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp ---------HCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 01235567889999999999888998888877788899999999999999998874
No 20
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.93 E-value=2.7e-24 Score=171.71 Aligned_cols=184 Identities=29% Similarity=0.532 Sum_probs=149.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
.++.|+|. |+|||||||+|+.|++++|+.++++|++++.....+++.+..+++++..|..+++.....++...+.
T Consensus 11 ~~~~I~l~-----G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~ 85 (199)
T 2bwj_A 11 KCKIIFII-----GGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMV 85 (199)
T ss_dssp HSCEEEEE-----ECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 45678888 9999999999999999999999999999998887788889999999998888888888777766554
Q ss_pred CC-CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCC
Q 025529 111 KP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV 189 (251)
Q Consensus 111 ~~-~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~ 189 (251)
.. ....++|+||+|....+...|...+ ..|+++|+|++|++++.+|+..|...
T Consensus 86 ~~~~~~~~vi~dg~~~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~---------------------- 139 (199)
T 2bwj_A 86 ASLGDTRGFLIDGYPREVKQGEEFGRRI----GDPQLVICMDCSADTMTNRLLQMSRS---------------------- 139 (199)
T ss_dssp HHTTSCSCEEEETCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHTCCC----------------------
T ss_pred cccccCccEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHcCCCC----------------------
Confidence 32 2456899999999988776654321 26789999999999999999987420
Q ss_pred CCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 190 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 190 ~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..+.++..+.+++|+..|+....++.++|...+.++.||++.+++++++.|.+.++
T Consensus 140 -----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~ 195 (199)
T 2bwj_A 140 -----SLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195 (199)
T ss_dssp -----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 00123356788899988988888888888766677889999999999999988774
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.92 E-value=3.6e-23 Score=171.09 Aligned_cols=208 Identities=38% Similarity=0.695 Sum_probs=170.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
++..++|+ |++||||||+++.|++++|+.+++.++++.......+..+..+..++..+...++..+.+.+...+.
T Consensus 26 ~~~~i~l~-----G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVIL-----GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEE-----CCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 56789999 9999999999999999999999999998887666566778888888888888888777777766554
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
.. ...++++||+|....+...+... ..++.+|+|++|++++.+|+..|+.+..+|+.+.....+|...-.++.|
T Consensus 101 ~~-~~~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 101 NR-RGQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TC-TTSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTT
T ss_pred hc-CCCeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccc
Confidence 43 34578999999887555443321 4578999999999999999998888888887766546677666666667
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
++++..+..+..+.+.+++..|.+...++.++|.+.+.++.||++.+ +++++.|.+.|.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence 77777776778899999999999988899999998888999999988 999999998875
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.80 E-value=1.6e-17 Score=129.13 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=113.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcC----CchHHHHHHHHHc-CCCcCHHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLGIKAKEAMDK-GELVSDDLVVGIIDE 107 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~----~~~~~~i~~~l~~-~~~~~~~~~~~ll~~ 107 (251)
|.|++. |+|||||||+++.| +.+|+++++++++++...... ...+......... + ...+..++..
T Consensus 2 ~~I~l~-----G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 71 (179)
T 3lw7_A 2 KVILIT-----GMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG----DGVVARLCVE 71 (179)
T ss_dssp CEEEEE-----CCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHC----TTHHHHHHHH
T ss_pred cEEEEE-----CCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCC----HHHHHHHHHH
Confidence 456666 99999999999999 999999999999998876542 2233333333322 2 2334555555
Q ss_pred HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCC
Q 025529 108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVD 187 (251)
Q Consensus 108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~ 187 (251)
.+.. .....+|+||+ ....+...+...+ ..++.+|+|++|++++.+|+..|...
T Consensus 72 ~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------- 125 (179)
T 3lw7_A 72 ELGT-SNHDLVVFDGV-RSLAEVEEFKRLL----GDSVYIVAVHSPPKIRYKRMIERLRS-------------------- 125 (179)
T ss_dssp HHCS-CCCSCEEEECC-CCHHHHHHHHHHH----CSCEEEEEEECCHHHHHHHHHTCC----------------------
T ss_pred HHHh-cCCCeEEEeCC-CCHHHHHHHHHHh----CCCcEEEEEECCHHHHHHHHHhccCC--------------------
Confidence 5533 34568999998 8888888776654 35679999999999999999988410
Q ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 188 DVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 188 ~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
....+.+.+.+|+..... .+...++... . +.||++.+++++.++|.+.++
T Consensus 126 ---------~~~~~~~~~~~r~~~~~~--~~~~~~~~~a-d-~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 126 ---------DDSKEISELIRRDREELK--LGIGEVIAMA-D-YIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp -----------CCCHHHHHHHHHHHHH--HTHHHHHHTC-S-EEEECCSCHHHHHHHHHHHHH
T ss_pred ---------CCcchHHHHHHHHHhhhc--cChHhHHHhC-C-EEEECCCCHHHHHHHHHHHHH
Confidence 013455677777643221 1122333222 2 457787899999999988774
No 23
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.73 E-value=1.9e-16 Score=129.37 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=114.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
.+.+++.|+|+ |+|||||||+++.|++.++ ..++.+. .+.+++.|..+++++.++....+....-+.
T Consensus 22 ~~~~g~~i~i~-----G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~ 90 (229)
T 4eaq_A 22 SNAMSAFITFE-----GPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLF 90 (229)
T ss_dssp CCCCCEEEEEE-----CCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred ecCCCeEEEEE-----cCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHH
Confidence 35578899999 9999999999999999996 4544432 234577888999988877654443332221
Q ss_pred -HHHHcCC--------CCCCceEEe----------CCCCCHHHH--HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 106 -DEAMKKP--------SCQKGFILD----------GFPRTEVQA--QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 106 -~~~l~~~--------~~~~~~Iid----------g~~~~~~~~--~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
..+.... ..++.+|+| |+++...+. ..+..+ ...+..||++|+|++|++++.+|+..|
T Consensus 91 ~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R 169 (229)
T 4eaq_A 91 AASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKN 169 (229)
T ss_dssp HHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1222111 123467889 887655332 334333 234568999999999999999999987
Q ss_pred cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529 165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE 244 (251)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~ 244 (251)
... ..+.++....+.+|+..++..+ .+.+ .+.++.||++.++++++++
T Consensus 170 ~~~---------------------------~dr~e~~~~~~~~rv~~~y~~l---~~~~--~~~~~vIDa~~s~eev~~~ 217 (229)
T 4eaq_A 170 SRD---------------------------QNRLDQEDLKFHEKVIEGYQEI---IHNE--SQRFKSVNADQPLENVVED 217 (229)
T ss_dssp --------------------------------CCCHHHHHHHHHHHHHHHHH---TTTC--TTTEEEEETTSCHHHHHHH
T ss_pred CCC---------------------------ccchhhhhHHHHHHHHHHHHHH---HHhC--CCCEEEEeCCCCHHHHHHH
Confidence 410 0122333445555554433222 1111 2468999999999999999
Q ss_pred HHHHhc
Q 025529 245 VQKALS 250 (251)
Q Consensus 245 i~~~l~ 250 (251)
|.+.|.
T Consensus 218 I~~~l~ 223 (229)
T 4eaq_A 218 TYQTII 223 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 24
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.72 E-value=3.6e-16 Score=125.52 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=105.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH-HHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID-EAM 109 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~-~~l 109 (251)
..|+|+ |++||||||+++.|++++ |+.++.+.. +.+++.|..+++++.++...+.....-+.. .+.
T Consensus 3 kFI~~E-----G~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~ 71 (205)
T 4hlc_A 3 AFITFE-----GPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR 71 (205)
T ss_dssp EEEEEE-----CCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred CEEEEE-----CCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 478889 999999999999999998 555554421 346788899999988877766654332221 111
Q ss_pred c--------CCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529 110 K--------KPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 169 (251)
Q Consensus 110 ~--------~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 169 (251)
. .+..+..+|.|.|..+ ......+.... ..+..||++|||++|++++.+|+..|+...
T Consensus 72 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~- 149 (205)
T 4hlc_A 72 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSRDQ- 149 (205)
T ss_dssp HHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCCcc-
Confidence 1 1112334667865321 22222233222 234689999999999999999998874210
Q ss_pred CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhh-CCcEEEEcCCCChhHHHHHHHH
Q 025529 170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQK 247 (251)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~-~~~~~~id~~~~~eev~~~i~~ 247 (251)
.|.+.....+.+|+ +.|. +++.. .+.++.||++.++++|+++|.+
T Consensus 150 --------------------------dr~e~~~~~f~~~v~~~Y~-------~l~~~~~~~~~~IDa~~~~e~V~~~i~~ 196 (205)
T 4hlc_A 150 --------------------------NRLDQEDLKFHEKVIEGYQ-------EIIHNESQRFKSVNADQPLENVVEDTYQ 196 (205)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHH-------HHHHSCCTTEEEEETTSCHHHHHHHHHH
T ss_pred --------------------------cchhccCHHHHHHHHHHHH-------HHHHhCCCCEEEEECCCCHHHHHHHHHH
Confidence 01111122233333 2222 22222 3469999999999999999887
Q ss_pred Hhc
Q 025529 248 ALS 250 (251)
Q Consensus 248 ~l~ 250 (251)
.|.
T Consensus 197 ~i~ 199 (205)
T 4hlc_A 197 TII 199 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 25
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.9e-16 Score=126.50 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=100.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGIIDEA 108 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ll~~~ 108 (251)
.+++.|+|+ |+|||||||+++.|++.+|+++++.|+++.... +.. +.+++.... .........++...
T Consensus 23 ~~~~~i~l~-----G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~----i~~~~~~~~~~~~~~~e~~~l~~l 91 (199)
T 3vaa_A 23 NAMVRIFLT-----GYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKT----VGELFTERGEAGFRELERNMLHEV 91 (199)
T ss_dssp -CCCEEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEE-----cCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCc----HHHHHHhcChHHHHHHHHHHHHHH
Confidence 456689999 999999999999999999999999999876532 122 222222110 00011112222222
Q ss_pred HcCCCCCCceEEe---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cCcCCCCCCceecccCCCCCCC
Q 025529 109 MKKPSCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRWIHPSSGRTYHTKFAPPKVP 184 (251)
Q Consensus 109 l~~~~~~~~~Iid---g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~-~r~~~~~~~~~~~~~~~~p~~~ 184 (251)
. ....+|++ |.+........+.. ++.+|||++|.+++.+|+. .++..+
T Consensus 92 ~----~~~~~vi~~ggg~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~Rp---------------- 143 (199)
T 3vaa_A 92 A----EFENVVISTGGGAPCFYDNMEFMNR--------TGKTVFLNVHPDVLFRRLRIAKQQRP---------------- 143 (199)
T ss_dssp T----TCSSEEEECCTTGGGSTTHHHHHHH--------HSEEEEEECCHHHHHHHHHHTGGGCG----------------
T ss_pred h----hcCCcEEECCCcEEccHHHHHHHHc--------CCEEEEEECCHHHHHHHHhcCCCCCC----------------
Confidence 2 33567776 33333333333222 5789999999999999998 443110
Q ss_pred CCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529 185 GVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 250 (251)
Q Consensus 185 ~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~ 250 (251)
. ..+.+.+.+..++..+.....+ +|.. .-+.||++. ++++++++|.+.|.
T Consensus 144 ----------~-~~~~~~~~~~~~i~~~~~~r~~---~y~~--ad~~Idt~~~s~ee~~~~I~~~l~ 194 (199)
T 3vaa_A 144 ----------I-LQGKEDDELMDFIIQALEKRAP---FYTQ--AQYIFNADELEDRWQIESSVQRLQ 194 (199)
T ss_dssp ----------G-GTTCCHHHHHHHHHHHHHHHHH---HHTT--SSEEEECCCCSSHHHHHHHHHHHH
T ss_pred ----------C-cCCCChhhHHHHHHHHHHHHHH---HHhh--CCEEEECCCCCHHHHHHHHHHHHH
Confidence 0 0133455666666655544443 4443 235677765 99999999988774
No 26
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.70 E-value=1.8e-15 Score=119.62 Aligned_cols=162 Identities=23% Similarity=0.230 Sum_probs=102.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH--------
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-------- 102 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-------- 102 (251)
.|+++ |+|||||||+++.|++++ |+++++++. ...+..+..+++++..|...+.....
T Consensus 2 ~I~l~-----G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 70 (195)
T 2pbr_A 2 LIAFE-----GIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSK 70 (195)
T ss_dssp EEEEE-----CSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45556 999999999999999998 999998863 23345666777777766444332211
Q ss_pred ---HHHHHHHcCCCCCCceEEe----------CCCCCH--HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529 103 ---GIIDEAMKKPSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 167 (251)
Q Consensus 103 ---~ll~~~l~~~~~~~~~Iid----------g~~~~~--~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 167 (251)
.++...+. ....+|+| |++... .....+..++ ..+..|+.+|+|++|++++.+|+..|.
T Consensus 71 ~l~~~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r~-- 144 (195)
T 2pbr_A 71 LIEEKIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEKN-- 144 (195)
T ss_dssp HHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhccC--
Confidence 11122221 22346677 555432 2333333222 223478999999999999999998542
Q ss_pred CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHH
Q 025529 168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQ 246 (251)
Q Consensus 168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~ 246 (251)
+.+ . ..+.+|+ ..|... ...+ +.++.||++.+++++++.|.
T Consensus 145 -----------------------------~~~-~-~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~ 186 (195)
T 2pbr_A 145 -----------------------------RFE-N-KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEIL 186 (195)
T ss_dssp -----------------------------CCC-C-HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHH
T ss_pred -----------------------------ccc-h-HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHH
Confidence 111 2 2344444 333322 1222 36788999999999999999
Q ss_pred HHhc
Q 025529 247 KALS 250 (251)
Q Consensus 247 ~~l~ 250 (251)
+.++
T Consensus 187 ~~l~ 190 (195)
T 2pbr_A 187 RALS 190 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 27
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.69 E-value=3e-15 Score=118.71 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=99.3
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH-------H
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-------G 103 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-------~ 103 (251)
.|+++ |++||||||+++.|++++ |++++.+.. +.+++.|..+++.+..+...+..... .
T Consensus 2 ~I~l~-----G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 70 (197)
T 2z0h_A 2 FITFE-----GIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNL 70 (197)
T ss_dssp EEEEE-----CSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45566 999999999999999999 999887643 34556778888887755544432211 1
Q ss_pred HHHHHHcCC-CCCCceEEeCC----------CCC--HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529 104 IIDEAMKKP-SCQKGFILDGF----------PRT--EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 170 (251)
Q Consensus 104 ll~~~l~~~-~~~~~~Iidg~----------~~~--~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 170 (251)
.+.. +... ..+..+|+|.+ ++. ......+... ......|+.+|+|++|++++.+|+..|.
T Consensus 71 ~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----- 143 (197)
T 2z0h_A 71 LVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDF-ATDGLIPDLTFYIDVDVETALKRKGELN----- 143 (197)
T ss_dssp HHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHC---C-----
T ss_pred HHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHH-hcCCCCCCEEEEEeCCHHHHHHHHhccC-----
Confidence 1222 3222 22345667744 332 2222222221 2233578999999999999999998872
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
+.+.. .+.+++ ..|... ...+ ...++.||++.++++++++|.+.+
T Consensus 144 --------------------------~~~~~--~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l 189 (197)
T 2z0h_A 144 --------------------------RFEKR--EFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDVVREV 189 (197)
T ss_dssp --------------------------CCCCH--HHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHHHHHT
T ss_pred --------------------------cccHH--HHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 11221 333333 333322 2222 236788999999999999999887
Q ss_pred c
Q 025529 250 S 250 (251)
Q Consensus 250 ~ 250 (251)
+
T Consensus 190 ~ 190 (197)
T 2z0h_A 190 K 190 (197)
T ss_dssp T
T ss_pred H
Confidence 5
No 28
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.68 E-value=2.6e-15 Score=121.22 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=108.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCC--CcCHHHHHH-H
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDLVVG-I 104 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~-l 104 (251)
+++.|+|+ |++||||||+++.|++++ |+.++.+.. +.++++|..+++++.++. .+......- .
T Consensus 5 ~g~~i~~e-----G~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf 73 (213)
T 4edh_A 5 TGLFVTLE-----GPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLM 73 (213)
T ss_dssp CCEEEEEE-----CSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHH
T ss_pred CceEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 57889999 999999999999999998 455554421 346788999999988764 233322211 1
Q ss_pred HHHHHcC--------CCCCCceEEeCCCC------------CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 105 IDEAMKK--------PSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 105 l~~~l~~--------~~~~~~~Iidg~~~------------~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
...+..+ +..+..+|.|.|.. .......+..+ ...+..||++|+|++|++++.+|+..|
T Consensus 74 ~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~-~~~~~~PDlvi~Ld~~~e~~~~Ri~~R 152 (213)
T 4edh_A 74 FAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF-VQGDLRPDLTLVFDLPVEIGLARAAAR 152 (213)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1111111 11234567787532 12233333322 234578999999999999999999987
Q ss_pred cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529 165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243 (251)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~ 243 (251)
.. .. +.+.....+.+++ +.|... .+.+ .+.++.||++.++++|++
T Consensus 153 ~~----~d------------------------r~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~eeV~~ 198 (213)
T 4edh_A 153 GR----LD------------------------RFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPLAEVQA 198 (213)
T ss_dssp SS----CC------------------------TTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHH
T ss_pred CC----cC------------------------cccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCHHHHHH
Confidence 41 00 1121112333333 344322 2222 246999999999999999
Q ss_pred HHHHHhc
Q 025529 244 EVQKALS 250 (251)
Q Consensus 244 ~i~~~l~ 250 (251)
.|.+.|.
T Consensus 199 ~I~~~l~ 205 (213)
T 4edh_A 199 GLDRLLP 205 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 29
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.67 E-value=2.8e-17 Score=132.14 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=108.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH--
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE-- 107 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~-- 107 (251)
.+++.|+|+ |+|||||||+++.|+++++..+++++ +++. ...+++.+..+++++..+..++......+...
T Consensus 8 ~~~~~I~l~-----G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 2wwf_A 8 KKGKFIVFE-----GLDRSGKSTQSKLLVEYLKNNNVEVK-HLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANR 80 (212)
T ss_dssp BCSCEEEEE-----ESTTSSHHHHHHHHHHHHHHTTCCEE-EEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred hcCCEEEEE-----cCCCCCHHHHHHHHHHHHHHcCCcEE-EEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 467889999 99999999999999999987777663 2221 11235667777777776666665443332221
Q ss_pred -----HHcC-CCCCCceEEeCCCCCHH--HHHH--H-HHHH---HhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529 108 -----AMKK-PSCQKGFILDGFPRTEV--QAQK--L-DEML---EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 108 -----~l~~-~~~~~~~Iidg~~~~~~--~~~~--l-~~~~---~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~ 173 (251)
.+.. ......+|+|+++.+-. +... + ..++ ......|+.+|+|++|++++.+|+..|..
T Consensus 81 ~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~------- 153 (212)
T 2wwf_A 81 WEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEE------- 153 (212)
T ss_dssp HTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSS-------
T ss_pred HHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcc-------
Confidence 0111 11234688999875311 1110 0 0111 11124689999999999999999865420
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
|.+ . +.+.+|+...+..... ...++.||++.+++++++.|.+.++
T Consensus 154 -----------------------r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l~ 198 (212)
T 2wwf_A 154 -----------------------IYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEVT 198 (212)
T ss_dssp -----------------------TTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHHT
T ss_pred -----------------------ccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHHH
Confidence 111 1 3555666443332221 2357889999999999999998875
No 30
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.67 E-value=2.5e-15 Score=119.96 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=100.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH---
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID--- 106 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~--- 106 (251)
|.|+|+ |+.||||||+++.|++++ |..++.+.. +.+++.+..+++++..+...+.....-...
T Consensus 1 mfI~~E-----G~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~ 69 (197)
T 3hjn_A 1 MFITFE-----GIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRN 69 (197)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHH
Confidence 578888 999999999999999988 666655431 345677777877776655443322211111
Q ss_pred ---HHH-cCCCCCCceEEeCCCCCH------------HHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCC
Q 025529 107 ---EAM-KKPSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 170 (251)
Q Consensus 107 ---~~l-~~~~~~~~~Iidg~~~~~------------~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~ 170 (251)
..+ ..+..+..+|.|.|..+. .....+.. +...+..||++|+|++|+++..+|...+.
T Consensus 70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~-~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----- 143 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND-FATDGLIPDLTFYIDVDVETALKRKGELN----- 143 (197)
T ss_dssp HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHC---C-----
T ss_pred HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHh-hhhcCCCCCceeecCcChHHHHHhCcCcC-----
Confidence 111 111233456778764221 11122222 22345789999999999999999954431
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
|.+ .. .+.+|+ +.|.+ +.+. ....++.|||+.++++|.++|.+.|
T Consensus 144 --------------------------r~e-~~-ef~~rv~~~y~~----la~~--~~~~~~~IDa~~~~eeV~~~I~~~i 189 (197)
T 3hjn_A 144 --------------------------RFE-KR-EFLERVREGYLV----LARE--HPERIVVLDGKRSIEEIHRDVVREV 189 (197)
T ss_dssp --------------------------TTC-CH-HHHHHHHHHHHH----HHHH--CTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred --------------------------ccc-cH-HHHHHHHHHHHH----HHHh--CCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 111 11 333333 33322 1111 1346899999999999999999988
Q ss_pred cC
Q 025529 250 SA 251 (251)
Q Consensus 250 ~~ 251 (251)
++
T Consensus 190 ~~ 191 (197)
T 3hjn_A 190 KR 191 (197)
T ss_dssp SC
T ss_pred HH
Confidence 63
No 31
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.67 E-value=4.2e-15 Score=116.12 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=92.4
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHH-HhCCceechhHHHHHHHHcCCc-----hHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKD-EYCLCHLATGDMLRAAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIID 106 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~-~~~~~~i~~~~li~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~ll~ 106 (251)
+.|++. |+|||||||+++.|++ .+++.+++.|.+ +......+. +...... .....+...+.
T Consensus 3 ~~I~i~-----G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 69 (181)
T 1ly1_A 3 KIILTI-----GCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAK 69 (181)
T ss_dssp EEEEEE-----CCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHH
T ss_pred eEEEEe-----cCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhh-------HHHHHHHHHHH
Confidence 456777 9999999999999999 689999998654 443332211 1111111 01223344455
Q ss_pred HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCC
Q 025529 107 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 186 (251)
Q Consensus 107 ~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~ 186 (251)
..+.....+.++|+|+++....+...+...+...+. +..+|+|++|.+++.+|+..|..+
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~~------------------- 129 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRGTK------------------- 129 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTC-EEEEEECCCCHHHHHHHHTTCGGG-------------------
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHhccccC-------------------
Confidence 555332345689999999888777777665544443 347899999999999999987421
Q ss_pred CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
....+.+++++..|.... ....+ .+|++.+ +++...|...|
T Consensus 130 ------------~~~~~~i~~~~~~~~~~~--------~~~~~-~id~~~~-~~v~~~i~~~l 170 (181)
T 1ly1_A 130 ------------AVPIDVLRSMYKSMREYL--------GLPVY-NGTPGKP-KAVIFDVDGTL 170 (181)
T ss_dssp ------------CCCHHHHHHHHHHHHHHH--------TCCCC--------------------
T ss_pred ------------CCCHHHHHHHHHHhhccC--------CCCcc-ccCCCCC-ceeeehhhhhh
Confidence 234567777777775541 11123 3787764 77877776655
No 32
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.67 E-value=7.6e-16 Score=125.31 Aligned_cols=175 Identities=13% Similarity=0.150 Sum_probs=106.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV 102 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 102 (251)
.+++.|+|+ |++||||||+++.|+++++ +.++.+ ++ +.+++.|..+++++.++...+.....
T Consensus 23 ~~g~~I~~e-----G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~l 91 (227)
T 3v9p_A 23 ARGKFITFE-----GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEAL 91 (227)
T ss_dssp CCCCEEEEE-----CCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHH
T ss_pred cCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHH
Confidence 368899999 9999999999999999984 333322 11 34678899999998887544333222
Q ss_pred HHHHHHHcC--------CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 103 GIIDEAMKK--------PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 103 ~ll~~~l~~--------~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
-....+... +..++.+|.|.|..+ ......+..+ ...+..||++|||++|++++.+|+.
T Consensus 92 lf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~-~~~~~~PDl~I~Ldv~~e~~~~Ri~ 170 (227)
T 3v9p_A 92 LMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERW-VQGGFQPDLTVLFDVPPQIASARRG 170 (227)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCSSCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHH
Confidence 121122111 112345778876432 2222222222 2235789999999999999999998
Q ss_pred cCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHH-HHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529 163 GRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRL-EAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241 (251)
Q Consensus 163 ~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~-~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev 241 (251)
.|.. .. +.+.....+.+|+ +.|.. +.+.+ .+.++.||++.++++|
T Consensus 171 ~R~~----~d------------------------r~E~~~~ef~~rv~~~Y~~----la~~~--~~~~~vIDa~~s~eeV 216 (227)
T 3v9p_A 171 AVRM----PD------------------------KFESESDAFFARTRAEYLR----RAQEA--PHRFVIVDSSEPIAQI 216 (227)
T ss_dssp CCCC----C---------------------------CCHHHHHHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHH
T ss_pred hccC----cc------------------------chhhhhHHHHHHHHHHHHH----HHHHh--cCCEEEEeCCCCHHHH
Confidence 8731 00 1122123344443 33322 22222 3469999999999999
Q ss_pred HHHHHHHhc
Q 025529 242 TSEVQKALS 250 (251)
Q Consensus 242 ~~~i~~~l~ 250 (251)
.++|.+.|+
T Consensus 217 ~~~I~~~l~ 225 (227)
T 3v9p_A 217 RKQLEGVLA 225 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.66 E-value=2.2e-15 Score=120.36 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=100.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHH---HHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEA 108 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~ll~~~ 108 (251)
++.|+|. |++||||||+++.|++.+|+.+++.|++..... ......+....+... ...+...
T Consensus 18 ~~~I~l~-----G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~ 82 (202)
T 3t61_A 18 PGSIVVM-----GVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGER 82 (202)
T ss_dssp SSCEEEE-----CSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHH
Confidence 5678888 999999999999999999999999987642210 111112222222211 1222222
Q ss_pred HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 109 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
+ .....+|+|+..........+... ...++.+|+|++|.+++.+|+..|..+
T Consensus 83 ~---~~~~~vivd~~~~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~Rl~~R~~~--------------------- 134 (202)
T 3t61_A 83 L---ASREPVVVSCSALKRSYRDKLRES----APGGLAFVFLHGSESVLAERMHHRTGH--------------------- 134 (202)
T ss_dssp H---TSSSCCEEECCCCSHHHHHHHHHT----STTCCEEEEEECCHHHHHHHHHHHHSS---------------------
T ss_pred H---hcCCCEEEECCCCCHHHHHHHHHh----cCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------
Confidence 2 334578999877666655554432 234568999999999999999988521
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
....+.++..+..+. +. + .....+.||++.++++++++|.+.|.
T Consensus 135 ----------~~~~~~~~~~~~~~~----~~---~-~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 135 ----------FMPSSLLQTQLETLE----DP---R-GEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp ----------CCCHHHHHHHHHHCC----CC---T-TSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHhcC----CC---C-CCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 112333333333321 11 1 12246789999999999999998874
No 34
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.66 E-value=2.5e-15 Score=118.21 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=91.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~ 110 (251)
++.|+++ |+|||||||+++.|++++|+++++.|+++..... .+. .+.+.. |..........++.....
T Consensus 5 ~~~i~l~-----G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~ 73 (185)
T 3trf_A 5 LTNIYLI-----GLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADI----AWIFEMEGEAGFRRREREMIEALCK 73 (185)
T ss_dssp CCEEEEE-----CSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCh----hhHHHHhCHHHHHHHHHHHHHHHHh
Confidence 4578888 9999999999999999999999999998766322 111 122111 110111222233332222
Q ss_pred CCCCCCceEEeCC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH--hcCcCCCCCCceecccCCCCCCCCC
Q 025529 111 KPSCQKGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI--TGRWIHPSSGRTYHTKFAPPKVPGV 186 (251)
Q Consensus 111 ~~~~~~~~Iidg~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl--~~r~~~~~~~~~~~~~~~~p~~~~~ 186 (251)
. ...+|..|. +........+.. ...+|||++|.+++.+|+ ..+..
T Consensus 74 ~---~~~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~~~~-------------------- 122 (185)
T 3trf_A 74 L---DNIILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRIGQKGEMR-------------------- 122 (185)
T ss_dssp S---SSCEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHHHCCTTCS--------------------
T ss_pred c---CCcEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHHhhcCCCC--------------------
Confidence 1 123443432 223333332222 247999999999999999 43321
Q ss_pred CCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhHHHHHHHHHhc
Q 025529 187 DDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQEVTSEVQKALS 250 (251)
Q Consensus 187 ~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~eev~~~i~~~l~ 250 (251)
|+.........++........+....+. . +.||++. +++++++.|.+.|.
T Consensus 123 ----------rp~~~~~~~~~~l~~~~~~r~~~y~~~a---d-~~Idt~~~~~~e~~~~I~~~l~ 173 (185)
T 3trf_A 123 ----------RPLFIKNNSKEKLQQLNEIRKPLYQAMA---D-LVYPTDDLNPRQLATQILVDIK 173 (185)
T ss_dssp ----------SCCCCCHHHHHHHHHHHHHHHHHHHHHC---S-EEEECTTCCHHHHHHHHHHHSC
T ss_pred ----------CCCCCCCCHHHHHHHHHHHHHHHHhhcC---C-EEEECCCCCHHHHHHHHHHHHH
Confidence 1222222223333333333333332222 2 4677765 89999999998875
No 35
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.65 E-value=1.9e-15 Score=119.29 Aligned_cols=175 Identities=13% Similarity=0.159 Sum_probs=95.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcC--HHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--DDLVVGI 104 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~l 104 (251)
++.|+|. |+|||||||+++.|+++++ +++++++++++......... ....+. ....+ ...+...
T Consensus 3 ~~~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ 73 (192)
T 1kht_A 3 NKVVVVT-----GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKM 73 (192)
T ss_dssp CCEEEEE-----CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHH
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHH
Confidence 4678888 9999999999999999998 99999999888754321100 000000 00000 1112222
Q ss_pred HHHHHcCCCCCCceEEeCCCCCHHHHHH---H-HHHHHhcCCCcCEEEEEecCHHHHHH-HHhc--CcCCCCCCceeccc
Q 025529 105 IDEAMKKPSCQKGFILDGFPRTEVQAQK---L-DEMLEKQGKKVDKVLNFAIDDAVLEE-RITG--RWIHPSSGRTYHTK 177 (251)
Q Consensus 105 l~~~l~~~~~~~~~Iidg~~~~~~~~~~---l-~~~~~~~~~~~~~vI~L~~~~e~~~~-Rl~~--r~~~~~~~~~~~~~ 177 (251)
+...+........+|+||++........ + .+++.. ..++++|||++|++++.+ |+.. |.
T Consensus 74 ~~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~~~R~------------ 139 (192)
T 1kht_A 74 AGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSDETRV------------ 139 (192)
T ss_dssp HHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTSSSCS------------
T ss_pred HHHHHHhhccCCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhhcccC------------
Confidence 2222221112347899987542111000 0 011111 136889999999999996 8987 42
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEE-cCCCChhHHHHHHHHHhc
Q 025529 178 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 178 ~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~i-d~~~~~eev~~~i~~~l~ 250 (251)
++....+.+..+...+ .........|.. ..++.| +++.+++++++.|.+.|.
T Consensus 140 -------------------r~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i~ 192 (192)
T 1kht_A 140 -------------------RDLDTASTIEQHQFMN-RCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVLR 192 (192)
T ss_dssp -------------------SSCCCHHHHHHHHHHH-HHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred -------------------CCcCCHHHHHHHHHHH-HHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHhC
Confidence 1223333333332222 222222333322 234455 555669999999998764
No 36
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.64 E-value=5.2e-15 Score=116.79 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=94.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHc-CCchHHHHHHHHHcCCCcCH--HHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSD--DLVVGII 105 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~-~~~~~~~i~~~l~~~~~~~~--~~~~~ll 105 (251)
.|+|+ |+|||||||+++.|+++++ +.+++.++++.+.+.. ....+. ..+ +...+. ..+...+
T Consensus 3 ~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~ 72 (194)
T 1nks_A 3 IGIVT-----GIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDA 72 (194)
T ss_dssp EEEEE-----ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHH
Confidence 46666 9999999999999999997 8889888888765521 111110 000 111112 1112111
Q ss_pred HHHHcCC---CCCCceEEeCCCCCHHH--------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHH-Hhc--CcCCCCCC
Q 025529 106 DEAMKKP---SCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITG--RWIHPSSG 171 (251)
Q Consensus 106 ~~~l~~~---~~~~~~Iidg~~~~~~~--------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R-l~~--r~~~~~~~ 171 (251)
...+... .....+|+|+++....+ ...+.. ..|+.+|+|++|++++.+| +.. |..
T Consensus 73 ~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~l~~~~~~~~~rr~~~~~R~~----- 141 (194)
T 1nks_A 73 AKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE------INPSVIFLLEADPKIILSRQKRDTTRNR----- 141 (194)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH------HCCSEEEEEECCHHHHHHHHHHCTTTCC-----
T ss_pred HHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh------cCCCEEEEEeCCHHHHHHHHHhhcccCC-----
Confidence 1111111 23457899987432222 122222 2378999999999998866 766 520
Q ss_pred ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHH--HHHHHHHHhccHHHHHHHhhCCcEEEE-cCCCChhHHHHHHHHH
Q 025529 172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVL--KSRLEAFHKQTEPVIDYYSKKGIVAQL-HAEKPPQEVTSEVQKA 248 (251)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~--~~r~~~y~~~~~~~~~~~~~~~~~~~i-d~~~~~eev~~~i~~~ 248 (251)
.+....+.+ .+++...+ ......+. ...++.| |++.++++++++|.+.
T Consensus 142 -------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~ 192 (194)
T 1nks_A 142 -------------------------NDYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEIIRS 192 (194)
T ss_dssp -------------------------CCCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHH
T ss_pred -------------------------CCccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHH
Confidence 011122222 22332222 22233332 2357888 9999999999999987
Q ss_pred hc
Q 025529 249 LS 250 (251)
Q Consensus 249 l~ 250 (251)
|.
T Consensus 193 l~ 194 (194)
T 1nks_A 193 MK 194 (194)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 37
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.64 E-value=1.8e-14 Score=116.16 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=104.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CC-ceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~-~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~ 101 (251)
+++.|+|+ |++||||||+++.|++++ |+ .++.+ ++ +.++++|..+++++... ..+.+...
T Consensus 2 ~g~~i~~e-----G~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e 70 (213)
T 4tmk_A 2 RSKYIVIE-----GLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAE 70 (213)
T ss_dssp CCCEEEEE-----ECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHH
Confidence 36789999 999999999999999988 43 22222 11 35688999999998732 23433321
Q ss_pred HH--------HHHHHHcC-CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 102 VG--------IIDEAMKK-PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 102 ~~--------ll~~~l~~-~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
.- .+...+.. +..+..+|.|.|..+ ......+... ...+..||++|||++|++++.+|
T Consensus 71 ~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~-~~~~~~PDl~i~Ldv~~e~~~~R 149 (213)
T 4tmk_A 71 VLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA-VLGDFRPDLTLYLDVTPEVGLKR 149 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH-hccCCCCCEEEEEeCCHHHHHHH
Confidence 11 11111110 122345677875322 2222223322 23457899999999999999999
Q ss_pred HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCC-cHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChh
Q 025529 161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDD-TAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ 239 (251)
Q Consensus 161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~-~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~e 239 (251)
+..|... .+.+. ..+.+++-.+.|... ....+.++.||++.+++
T Consensus 150 i~~R~~~----------------------------dr~E~~~~~f~~rv~~~y~~l-------a~~~~~~~vIDa~~s~e 194 (213)
T 4tmk_A 150 ARARGEL----------------------------DRIEQESFDFFNRTRARYLEL-------AAQDKSIHTIDATQPLE 194 (213)
T ss_dssp HHHHSSC----------------------------CTTTTSCHHHHHHHHHHHHHH-------HHTCTTEEEEETTSCHH
T ss_pred HHhcCCc----------------------------cchhhhHHHHHHHHHHHHHHH-------HHHCCcEEEECCCCCHH
Confidence 9987410 01111 222333222333322 12225799999999999
Q ss_pred HHHHHHHHHhc
Q 025529 240 EVTSEVQKALS 250 (251)
Q Consensus 240 ev~~~i~~~l~ 250 (251)
+|++.|.+.|+
T Consensus 195 eV~~~I~~~l~ 205 (213)
T 4tmk_A 195 AVMDAIRTTVT 205 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.64 E-value=4.6e-15 Score=114.85 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=91.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~ 111 (251)
|+|+|. |+|||||||+++.|++++|++++++|++.+... |..+++++.. +..........++ ..+.
T Consensus 1 m~I~l~-----G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~- 67 (168)
T 2pt5_A 1 MRIYLI-----GFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS- 67 (168)
T ss_dssp CEEEEE-----SCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT-
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh-
Confidence 456666 999999999999999999999999999876643 2223333322 2111111112222 2222
Q ss_pred CCCCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 112 PSCQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 112 ~~~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
....+|++ |. +........ +. .++.+|+|++|++++.+|+..|... . .
T Consensus 68 --~~~~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~~r-----~-~------------- 118 (168)
T 2pt5_A 68 --EKENVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSKER-----P-L------------- 118 (168)
T ss_dssp --TSSSEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTTCC-----B-G-------------
T ss_pred --ccCCeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCCCC-----C-C-------------
Confidence 23456665 32 122222221 21 2589999999999999999876310 0 0
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.. +..+.+++++.. ....|.. ..++. +++.+++++++.|.+.+.
T Consensus 119 ------~~---~~~~~i~~~~~~-------~~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 119 ------LK---RPLDEIKNLFEE-------RRKIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp ------GG---SCGGGTHHHHHH-------HHHHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred ------Cc---chHHHHHHHHHH-------HHHHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 00 111223333221 1123333 34555 777999999999998875
No 39
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.63 E-value=1.1e-15 Score=118.54 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=62.9
Q ss_pred cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHcCCCCCCce-
Q 025529 41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKGF- 118 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~~~~~~~~~- 118 (251)
+|+|+|||||||+++.|++++|++++++|.++++.. |..+.+++.. |..........++..... ...+
T Consensus 11 ~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~~~~~ 80 (168)
T 1zuh_A 11 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKT----LKTPH 80 (168)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----CSSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----cCCCE
Confidence 344999999999999999999999999999887643 2223333322 221111222233333221 1233
Q ss_pred EEe-C--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 119 ILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 119 Iid-g--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
|+. | ++.. .. + ..++.+|+|++|++++.+|+..|
T Consensus 81 Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 81 VISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp EEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred EEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 443 2 2222 11 1 23679999999999999999877
No 40
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.62 E-value=4e-15 Score=121.75 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC---CCcCHHHHH----
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLVV---- 102 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~---- 102 (251)
-+++.|+|+ |++||||||+++.|++.++...+++..+++. +.++++|..+++++..+ ..+......
T Consensus 25 ~~~~~i~~e-----G~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~ 97 (236)
T 3lv8_A 25 MNAKFIVIE-----GLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVY 97 (236)
T ss_dssp -CCCEEEEE-----ESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHH
Confidence 367889999 9999999999999999984332321111121 35678999999998632 233332221
Q ss_pred ----HHHHHHHc-CCCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 103 ----GIIDEAMK-KPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 103 ----~ll~~~l~-~~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
+.+...+. .+..++.+|.|.|..+ ......+..+ ...+..||++|+|++|++++.+|+..|.
T Consensus 98 A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~-~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 98 AARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT-ALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11111111 1122345677865221 2222223222 2235789999999999999999999874
Q ss_pred CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHH-HHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHH
Q 025529 166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLE-AFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSE 244 (251)
Q Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~-~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~ 244 (251)
.. . +.+.....+.+|+. .|.. ++...+.++.||++.++++|.++
T Consensus 177 ~~----d------------------------r~E~~~~~~~~rv~~~y~~-------la~~~~~~~vIDa~~sieeV~~~ 221 (236)
T 3lv8_A 177 EL----D------------------------RIEKMDISFFERARERYLE-------LANSDDSVVMIDAAQSIEQVTAD 221 (236)
T ss_dssp CC----C------------------------TTTTSCHHHHHHHHHHHHH-------HHHHCTTEEEEETTSCHHHHHHH
T ss_pred Cc----c------------------------hhhhhHHHHHHHHHHHHHH-------HHHHCCCEEEEeCCCCHHHHHHH
Confidence 10 0 11111123333432 3322 22222348999999999999999
Q ss_pred HHHHhc
Q 025529 245 VQKALS 250 (251)
Q Consensus 245 i~~~l~ 250 (251)
|.++|+
T Consensus 222 I~~~l~ 227 (236)
T 3lv8_A 222 IRRALQ 227 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988774
No 41
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.62 E-value=9.1e-15 Score=117.10 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=91.5
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCC-----cC-----------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-----VS----------------- 97 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~-----~~----------------- 97 (251)
|+|+|++||||||+++.|++ +|+++++.|++.+....++......+.+.+..... +.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~ 83 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLW 83 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHHHH
Confidence 33449999999999999988 99999999998776443333222222222211110 00
Q ss_pred -HHHHHHH----HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529 98 -DDLVVGI----IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 172 (251)
Q Consensus 98 -~~~~~~l----l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~ 172 (251)
....... +...+... ...++|+|+ |...... +. ..++.+|+|++|++++.+|+..|.
T Consensus 84 l~~~~~p~v~~~~~~~~~~~-~~~~vv~~~-~~l~e~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~------- 145 (206)
T 1jjv_A 84 LNNLLHPAIRERMKQKLAEQ-TAPYTLFVV-PLLIENK--LT-------ALCDRILVVDVSPQTQLARSAQRD------- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CSSEEEEEC-TTTTTTT--CG-------GGCSEEEEEECCHHHHHHHHC----------
T ss_pred HHhccCHHHHHHHHHHHHhc-CCCEEEEEe-chhhhcC--cH-------hhCCEEEEEECCHHHHHHHHHHcC-------
Confidence 0011111 11222222 234677786 3222111 11 246899999999999999998773
Q ss_pred eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChh----HHHHHHHHH
Q 025529 173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQ----EVTSEVQKA 248 (251)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~e----ev~~~i~~~ 248 (251)
+.+.+.+.+|+... .+..+.+...+ +.||++.+++ ++.++|.+.
T Consensus 146 --------------------------~~~~e~~~~r~~~q----~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~ 193 (206)
T 1jjv_A 146 --------------------------NNNFEQIQRIMNSQ----VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLEL 193 (206)
T ss_dssp ----------------------------CHHHHHHHHHHS----CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHH
Confidence 22456677776541 12233333323 4678888999 999998876
Q ss_pred hc
Q 025529 249 LS 250 (251)
Q Consensus 249 l~ 250 (251)
++
T Consensus 194 ~~ 195 (206)
T 1jjv_A 194 HQ 195 (206)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 42
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.62 E-value=9.1e-15 Score=116.64 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=101.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH----
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII---- 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll---- 105 (251)
+++.|+|+ |+|||||||+++.|++++ |+++++++... ..++.|..+++++..+........ .++
T Consensus 3 ~~~~I~l~-----G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~ 71 (204)
T 2v54_A 3 RGALIVFE-----GLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCAN 71 (204)
T ss_dssp CCCEEEEE-----CCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHH
T ss_pred CCcEEEEE-----cCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHH
Confidence 57789999 999999999999999999 68777764211 134567778888876554443322 111
Q ss_pred --------HHHHcCCCCCCceEEeCCCCCHHH--------HHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529 106 --------DEAMKKPSCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 169 (251)
Q Consensus 106 --------~~~l~~~~~~~~~Iidg~~~~~~~--------~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 169 (251)
...+ .....+|+|+|+.+... ...+.. +......|+.+|||++|++++.+ .|..+
T Consensus 72 r~~~~~~i~~~l---~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~-~~~~~~~~d~vi~l~~~~e~~~~---~R~~d-- 142 (204)
T 2v54_A 72 RWEFASFIQEQL---EQGITLIVDRYAFSGVAYAAAKGASMTLSKS-YESGLPKPDLVIFLESGSKEINR---NVGEE-- 142 (204)
T ss_dssp HHTTHHHHHHHH---HTTCEEEEESCHHHHHHHHHHTTCCHHHHHH-HHTTSBCCSEEEEECCCHHHHTT---CCSSS--
T ss_pred HHHHHHHHHHHH---HCCCEEEEECchhhHHHHHHccCCCHHHHHH-HhcCCCCCCEEEEEeCCHHHHHh---hcCcc--
Confidence 1111 12346888998764321 111221 22222468999999999998877 33200
Q ss_pred CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHh
Q 025529 170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKAL 249 (251)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l 249 (251)
+.+ ...+.+|+...+.... .. ....++.||++.+++++++.|.+.|
T Consensus 143 ---------------------------~~e--~~~~~~rl~~~y~~~~---~~--~~~~~~~Id~~~~~~~v~~~i~~~l 188 (204)
T 2v54_A 143 ---------------------------IYE--DVTFQQKVLQEYKKMI---EE--GDIHWQIISSEFEEDVKKELIKNIV 188 (204)
T ss_dssp ---------------------------TTC--CSHHHHHHHHHHHHHH---TT--CSSCEEEECTTSCHHHHHHHHHHHH
T ss_pred ---------------------------ccc--HHHHHHHHHHHHHHHH---Hh--CCCcEEEEECCCCHHHHHHHHHHHH
Confidence 001 1244555544222111 11 1236789999999999999998877
Q ss_pred c
Q 025529 250 S 250 (251)
Q Consensus 250 ~ 250 (251)
.
T Consensus 189 ~ 189 (204)
T 2v54_A 189 I 189 (204)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.61 E-value=1.9e-14 Score=111.82 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=93.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 113 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~ 113 (251)
.|+|. |+|||||||+++.|++++|+++++.|.+++.. .+......+.. .+..........++ ..+.
T Consensus 4 ~I~l~-----G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~-~~l~--- 69 (173)
T 1e6c_A 4 PIFMV-----GARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESEAL-QAVA--- 69 (173)
T ss_dssp CEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHHHH-HHHC---
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHHHH-HHhh---
Confidence 46666 99999999999999999999999999987764 12222111110 01101111111222 2222
Q ss_pred CCCceEEe-CC--CCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh--cCcCCCCCCceecccCCCCCCCCCCC
Q 025529 114 CQKGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT--GRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 114 ~~~~~Iid-g~--~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~--~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
...+|++ |. +........+. .++.+|+|++|++++.+|+. .|..+
T Consensus 70 -~~~~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r~~~--------------------- 119 (173)
T 1e6c_A 70 -TPNRVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQAHQ--------------------- 119 (173)
T ss_dssp -CSSEEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHCSCC---------------------
T ss_pred -cCCeEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccCCCC---------------------
Confidence 2346664 42 22222222221 14799999999999999998 66210
Q ss_pred CCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
++....+...+++..++....+ +|.. ..+.||++ .+++++++.|.+.++
T Consensus 120 --------r~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 120 --------RPTLTGRPIAEEMEAVLREREA---LYQD--VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp --------CCCTTHHHHHHHHHHHHHHHHH---HHHH--HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred --------CCcCCCCCHHHHHHHHHHHHHH---HHHh--CcEEEECCCCCHHHHHHHHHHHhc
Confidence 1222223445555555444333 2322 23467888 899999999998875
No 44
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.61 E-value=4.8e-15 Score=116.56 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=89.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~ 111 (251)
+.|+|. |+|||||||+|+.|++++|+++++.|++++... +.. +.+++. .|..........++...+..
T Consensus 3 ~~I~l~-----G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~ 71 (184)
T 2iyv_A 3 PKAVLV-----GLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD 71 (184)
T ss_dssp CSEEEE-----CSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 356777 999999999999999999999999999887643 111 122221 12111122222233322211
Q ss_pred CCCCCceEE-eCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCC
Q 025529 112 PSCQKGFIL-DGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 190 (251)
Q Consensus 112 ~~~~~~~Ii-dg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (251)
..+|+ +|...... .... ..+. .+.+|+|++|.+++.+|+..|...+
T Consensus 72 ----~~~vi~~g~~~v~~-~~~~-~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~---------------------- 118 (184)
T 2iyv_A 72 ----HDGVLSLGGGAVTS-PGVR-AALA-----GHTVVYLEISAAEGVRRTGGNTVRP---------------------- 118 (184)
T ss_dssp ----CCSEEECCTTGGGS-HHHH-HHHT-----TSCEEEEECCHHHHHHHTTCCCCCS----------------------
T ss_pred ----CCeEEecCCcEEcC-HHHH-HHHc-----CCeEEEEeCCHHHHHHHHhCCCCCC----------------------
Confidence 12333 33211111 1111 1111 4579999999999999998773100
Q ss_pred CCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 191 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 191 ~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
+. ...+.. .++..+..... .+|.... .+.||++ .+++++++.|.+.+.
T Consensus 119 ---~~-~~~~~~----~~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 119 ---LL-AGPDRA----EKYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp ---ST-TSCCHH----HHHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTSC
T ss_pred ---Cc-cCCCHH----HHHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHHh
Confidence 00 011212 22333322222 2232212 3578988 899999999988764
No 45
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.61 E-value=1.7e-14 Score=111.79 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=87.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 113 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~ 113 (251)
.|+|+ |+|||||||+++.|++++++++++.+.+..... . +...+ ... ..+.
T Consensus 3 ~i~l~-----G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~~------------~~~-~~l~--- 53 (173)
T 3kb2_A 3 LIILE-----GPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKLF------------EHF-NKLA--- 53 (173)
T ss_dssp EEEEE-----CSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHHH------------HHH-HHHT---
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHHH------------HHH-HHHH---
Confidence 45555 999999999999999999999999987654311 0 01110 111 1111
Q ss_pred CCCceEEeCCC---------------CCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccC
Q 025529 114 CQKGFILDGFP---------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 178 (251)
Q Consensus 114 ~~~~~Iidg~~---------------~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~ 178 (251)
....+|.|.+. ........+.. ....|+.+|||++|++++.+|+..|..
T Consensus 54 ~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~i~l~~~~e~~~~R~~~r~r------------ 117 (173)
T 3kb2_A 54 DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIED----KIKAKAKVVYLHADPSVIKKRLRVRGD------------ 117 (173)
T ss_dssp TCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH----HHTTTEEEEEEECCHHHHHHHHHHHSC------------
T ss_pred hCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhc----cCCCCCEEEEEeCCHHHHHHHHHhcCC------------
Confidence 12344555321 11222222222 224688999999999999999988731
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 179 APPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 179 ~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
+....+.+++....| ......|. ...+.||++ .++++++++|.+.++
T Consensus 118 -------------------~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~ 165 (173)
T 3kb2_A 118 -------------------EYIEGKDIDSILELY----REVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVE 165 (173)
T ss_dssp -------------------SCCCHHHHHHHHHHH----HHHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred -------------------cchhhhHHHHHHHHH----HHHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 111222222222332 22233332 257789998 599999999998774
No 46
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.61 E-value=2.5e-14 Score=114.60 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=106.6
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHH---------------
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDD--------------- 99 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~--------------- 99 (251)
|+|+|++||||||+++.|++ +|++++++|.+.++.+.++.+....+.+.+..+ +.+...
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~ 90 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRR 90 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHH
Confidence 45669999999999999998 999999999999988887777666666665422 223321
Q ss_pred ---HHHHHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCc
Q 025529 100 ---LVVGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 172 (251)
Q Consensus 100 ---~~~~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~ 172 (251)
++...+. ..+... ....+|+|. |...+.. .+. ..+|.+|++++|+++.++|+..|.
T Consensus 91 L~~i~HP~I~~~~~~~~~~~-~~~~vv~d~-pLL~E~~-~~~-------~~~D~vi~V~ap~e~r~~Rl~~Rd------- 153 (210)
T 4i1u_A 91 LEAITHPLIRAETEREARDA-QGPYVIFVV-PLLVESR-NWK-------ARCDRVLVVDCPVDTQIARVMQRN------- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CSSSEEEEC-TTCTTCH-HHH-------HHCSEEEEEECCHHHHHHHHHHHH-------
T ss_pred HHHHhhHHHHHHHHHHHHhc-CCCEEEEEE-ecccccC-Ccc-------ccCCeEEEEECCHHHHHHHHHhcC-------
Confidence 2222222 222222 223456664 5443311 111 236899999999999999999873
Q ss_pred eecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 173 TYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 173 ~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
+.+.+.+++|+... .+..+.....+ ++||++ ++++++.++|.+.++
T Consensus 154 --------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~ 200 (210)
T 4i1u_A 154 --------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQ 200 (210)
T ss_dssp --------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHH
Confidence 45667888887652 22333333322 357888 899999999987653
No 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.58 E-value=3.9e-14 Score=113.44 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=94.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCC---CcCHHHH----
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGE---LVSDDLV---- 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~---- 101 (251)
+++.|+|+ |+|||||||+++.|+++++.. ++.++. +.+..+++++..+. .......
T Consensus 3 ~~~~I~i~-----G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 67 (213)
T 2plr_A 3 KGVLIAFE-----GIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLTFSLIH 67 (213)
T ss_dssp CCEEEEEE-----CCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHHHHHHH
T ss_pred CCeEEEEE-----cCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHHHHHHH
Confidence 46788888 999999999999999999763 443210 12222333332211 1111100
Q ss_pred --------HHHHHHHHcCCCCCCceEEeCCCCCHHHH--------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh-cC
Q 025529 102 --------VGIIDEAMKKPSCQKGFILDGFPRTEVQA--------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GR 164 (251)
Q Consensus 102 --------~~ll~~~l~~~~~~~~~Iidg~~~~~~~~--------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~-~r 164 (251)
...+...+ ..+..+|+|+++.+.... ..+.. +......++++|+|++|++++.+|+. .|
T Consensus 68 ~~~r~~~~~~~i~~~l---~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R 143 (213)
T 2plr_A 68 ATDFSDRYERYILPML---KSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSK 143 (213)
T ss_dssp HHHHHHHHHHTHHHHH---HTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH---hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 01111112 123468899987643211 11222 22222458999999999999999998 66
Q ss_pred cCCCCCCceecccCCCCCCCCCCCCCCCCcccCCC--CcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHH
Q 025529 165 WIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKD--DTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVT 242 (251)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~--~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~ 242 (251)
.. .++ ++ .+. .+..+.+ +....+.+|+..++..+. .. ..++.||++.++++++
T Consensus 144 ~~---~~~-~~--------~g~------~~~~~~d~~e~~~~~~~r~~~~~~~~~------~~-~~~~~Id~~~~~e~v~ 198 (213)
T 2plr_A 144 RK---IKP-QE--------AGA------DIFPGLSPEEGFLKYQGLITEVYDKLV------KD-ENFIVIDGTKTPKEIQ 198 (213)
T ss_dssp CC---CCT-TT--------TTT------TTCTTSCHHHHHHHHHHHHHHHHHHHT------TT-TTCEEEETTSCHHHHH
T ss_pred cc---ccc-cc--------ccc------ccccccchhhhHHHHHHHHHHHHHHHH------hh-CCEEEEECCCCHHHHH
Confidence 31 011 10 000 0001111 111344555444333221 11 1578899999999999
Q ss_pred HHHHHHhc
Q 025529 243 SEVQKALS 250 (251)
Q Consensus 243 ~~i~~~l~ 250 (251)
+.|.+.|+
T Consensus 199 ~~I~~~l~ 206 (213)
T 2plr_A 199 IQIRKFVG 206 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988774
No 48
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.57 E-value=1.9e-14 Score=116.31 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=98.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-----CCCcCHHHHH---
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLVV--- 102 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~--- 102 (251)
+++.|+|. |++||||||+++.|++ +|++++++|.+.+....++......+.+.+.. ...+....+.
T Consensus 3 ~~~~I~i~-----G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~ 76 (218)
T 1vht_A 3 LRYIVALT-----GGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERI 76 (218)
T ss_dssp CCEEEEEE-----CCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHH
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHH
Confidence 45677888 9999999999999998 99999999998877554444444444443321 1112221111
Q ss_pred ---------------HHHH----HHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhc
Q 025529 103 ---------------GIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 163 (251)
Q Consensus 103 ---------------~ll~----~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~ 163 (251)
..+. ..+... ..++++.+.|...... +. ..++.+|||++|++++.+|+..
T Consensus 77 f~~~~~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~ 145 (218)
T 1vht_A 77 FANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQ 145 (218)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHH
Confidence 1111 111111 2234444445432221 11 2478999999999999999987
Q ss_pred CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243 (251)
Q Consensus 164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~ 243 (251)
|. ..+.+.+++++... . +...++.... +.||++.+++++.+
T Consensus 146 R~---------------------------------~~~~~~~~~~~~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~ 186 (218)
T 1vht_A 146 RD---------------------------------DVTREHVEQILAAQ---A-TREARLAVAD--DVIDNNGAPDAIAS 186 (218)
T ss_dssp HH---------------------------------TCCHHHHHHHHHHS---C-CHHHHHHHCS--EEEECSSCTTSHHH
T ss_pred cC---------------------------------CCCHHHHHHHHHhc---C-ChHHHHHhCC--EEEECCCCHHHHHH
Confidence 63 22345566665542 1 1222222222 46888889999999
Q ss_pred HHHHHhc
Q 025529 244 EVQKALS 250 (251)
Q Consensus 244 ~i~~~l~ 250 (251)
.|.+.++
T Consensus 187 ~I~~~l~ 193 (218)
T 1vht_A 187 DVARLHA 193 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 49
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.57 E-value=1.1e-13 Score=108.93 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=72.5
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH-hCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCc---CHHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV---SDDLVV 102 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~-~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~ 102 (251)
+.+.+++.|+++ |+|||||||+++.|++. +|++++++|+++++. .-...++.. +.. ..+ ++....
T Consensus 5 ~~~~~~~~I~l~-----G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~ 73 (184)
T 1y63_A 5 MEQPKGINILIT-----GTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLL 73 (184)
T ss_dssp -CCCSSCEEEEE-----CSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHH
T ss_pred cCCCCCCEEEEE-----CCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHH
Confidence 445667889999 99999999999999999 799999999998763 111112211 111 112 223333
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+...+.. ..++++|...... +. . ..++.+|+|++|.+++.+|+..|.
T Consensus 74 ~~l~~~~~~---~g~~vi~~~~~~~-----~~----~--~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 74 DFMEPIMVS---RGNHVVDYHSSEL-----FP----E--RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HHHHHHHTS---SSEEEEECSCCTT-----SC----G--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHHHHHHhc---cCCEEEeCchHhh-----hh----h--ccCCEEEEEECCHHHHHHHHHhCC
Confidence 334443322 3467888653211 00 0 125789999999999999999873
No 50
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.57 E-value=2.4e-14 Score=113.07 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
.+++.|++. |+|||||||+++.|++++|+++++.|.+...........+......+.. .-...+...+...+
T Consensus 3 ~~~~~I~l~-----G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 74 (193)
T 2rhm_A 3 QTPALIIVT-----GHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATIL 74 (193)
T ss_dssp SCCEEEEEE-----ESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHH
Confidence 356788888 9999999999999999999999999876544322100000100000000 00011112222222
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
. .+.++|+|++.........+.. +...+..++.+|+|++|++++.+|+..|.
T Consensus 75 ~---~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 75 Q---SGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp H---TTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred h---CCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 2 3457999998732222223322 33334567899999999999999998774
No 51
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.56 E-value=5.3e-15 Score=119.93 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=92.0
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC----ceec-hhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL----CHLA-TGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 101 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~----~~i~-~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 101 (251)
+...+++.|+|+ |++||||||+++.|+++++. .++. +. .+.+++.|..+++++...........
T Consensus 16 ~~~~~~~~i~~~-----G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr------eP~~t~~g~~ir~~l~~~~~~~~~~e 84 (223)
T 3ld9_A 16 TQGPGSMFITFE-----GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR------EPGGTLLNESVRNLLFKAQGLDSLSE 84 (223)
T ss_dssp ---CCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE------SSCSSHHHHHHHHHHHTCSSCCHHHH
T ss_pred ccCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhhccCceeeEeee------CCCCChHHHHHHHHHhCCCCCCHHHH
Confidence 345678999999 99999999999999998754 3322 21 13456788888888875332433322
Q ss_pred H-HHHHHHHcC--------CCCCCceEEeCCCCC------------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHH
Q 025529 102 V-GIIDEAMKK--------PSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 160 (251)
Q Consensus 102 ~-~ll~~~l~~--------~~~~~~~Iidg~~~~------------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~R 160 (251)
. -....+... +..++.+|.|.|..+ ......+...+. . ..||++|||++|+++..+|
T Consensus 85 ~llf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~-~-~~PDl~I~Ldv~~e~~~~R 162 (223)
T 3ld9_A 85 LLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVI-D-VYPDITFIIDVDINESLSR 162 (223)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHC-S-SCCSEEEEEECC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhh-c-CCCCeEEEEeCCHHHHHHH
Confidence 1 111111111 112345677876421 222233333222 2 6899999999999999999
Q ss_pred HhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhH
Q 025529 161 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQE 240 (251)
Q Consensus 161 l~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~ee 240 (251)
+ .+. |.+.....+.+|+...+.. +.+.+ .+.++.||++.++++
T Consensus 163 i-~rd-------------------------------r~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~siee 205 (223)
T 3ld9_A 163 S-CKN-------------------------------GYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYD 205 (223)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSC
T ss_pred h-ccC-------------------------------ccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHH
Confidence 8 321 1111112333444322221 22222 246899999999999
Q ss_pred HHHHHHHHhc
Q 025529 241 VTSEVQKALS 250 (251)
Q Consensus 241 v~~~i~~~l~ 250 (251)
| ++|.+.|+
T Consensus 206 V-~~I~~~l~ 214 (223)
T 3ld9_A 206 I-DDINFVHL 214 (223)
T ss_dssp C-CHHHHHHH
T ss_pred H-HHHHHHHH
Confidence 9 99988774
No 52
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.56 E-value=2.6e-13 Score=106.31 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=89.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee-chhHHHHHHHHcCCchHHHHHHHHHcCCCc----C--HHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKGELV----S--DDLVV 102 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i-~~~~li~~~~~~~~~~~~~i~~~l~~~~~~----~--~~~~~ 102 (251)
.+++.|+|. |+|||||||+++.|+++++.+++ +.+ ..+..+++++..+... . ...+.
T Consensus 3 ~~~~~I~l~-----G~~GsGKST~a~~La~~l~~~~i~d~~-----------~~g~~i~~~~~~g~~~~~~~~~~~~~~~ 66 (183)
T 2vli_A 3 MRSPIIWIN-----GPFGVGKTHTAHTLHERLPGSFVFEPE-----------EMGQALRKLTPGFSGDPQEHPMWIPLML 66 (183)
T ss_dssp --CCEEEEE-----CCC----CHHHHHHHHHSTTCEECCTH-----------HHHHHHHHTSTTCCSCGGGSTTHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCCEEEchh-----------hhHHHHHHhCccccchhhhhHHHHHHHH
Confidence 356788888 99999999999999999999888 421 1222333333211110 0 02223
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCC
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 182 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~ 182 (251)
+.+...+.. .+..+|+|+..........+...+...+..+ ..|+|++|++++.+|+..|..
T Consensus 67 ~~i~~~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~---------------- 127 (183)
T 2vli_A 67 DALQYASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ---------------- 127 (183)
T ss_dssp HHHHHHHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC------------------
T ss_pred HHHHHHHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc----------------
Confidence 344333322 1335777876655544444444444444333 569999999999999998741
Q ss_pred CCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 183 VPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 183 ~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
|+ ...+.++..+.. ..+. . + .. .||++ .+++++++.|.+.+.
T Consensus 128 --------------r~-~~~~~~~~~~~~----~~~~-~-~----~~-~Id~~~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 128 --------------PQ-VNVGTVEDRLNE----LRGE-Q-F----QT-HIDTAGLGTQQVAEQIAAQVG 170 (183)
T ss_dssp -----------------CCHHHHHHHHHH----HTSG-G-G----CS-EEECTTCCHHHHHHHHHHHHT
T ss_pred --------------cc-hhHHHHHHHHHh----hccc-c-c----ce-EeeCCCCCHHHHHHHHHHHHH
Confidence 11 112333332222 2222 2 2 23 78987 899999999998875
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.55 E-value=6.3e-15 Score=118.45 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=95.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH-----
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI----- 104 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l----- 104 (251)
.+++.|+|+ |+|||||||+++.|+++++..+++++.+ +. ...+++.+..++.++..+..++......+
T Consensus 7 ~~~~~I~l~-----G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r 79 (215)
T 1nn5_A 7 RRGALIVLE-----GVDRAGKSTQSRKLVEALCAAGHRAELL-RF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR 79 (215)
T ss_dssp CCCCEEEEE-----ESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCcEEEe-eC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 467889999 9999999999999999986555544221 11 01124556667777766544554432211
Q ss_pred ------HHHHHcCCCCCCceEEeCCCCCHH---------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCC
Q 025529 105 ------IDEAMKKPSCQKGFILDGFPRTEV---------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 169 (251)
Q Consensus 105 ------l~~~l~~~~~~~~~Iidg~~~~~~---------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~ 169 (251)
+...+ .....+|+|.+..+-. ....+. .+......|+.+|+|++|++++.+|+..+. +
T Consensus 80 ~~~~~~i~~~l---~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~-~-- 152 (215)
T 1nn5_A 80 WEQVPLIKEKL---SQGVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFGH-E-- 152 (215)
T ss_dssp HTTHHHHHHHH---HTTCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC------C--
T ss_pred HHHHHHHHHHH---HCCCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c--
Confidence 11222 1234578885421100 011111 111122358999999999999999986331 0
Q ss_pred CCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHH-HHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHH
Q 025529 170 SGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEA-FHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKA 248 (251)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~-y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~ 248 (251)
+.+. ..+.+++.. |..... .+ ...++.||++.+++++++.|.+.
T Consensus 153 ---------------------------~~~~--~~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i~~~ 197 (215)
T 1nn5_A 153 ---------------------------RYEN--GAFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDIRVL 197 (215)
T ss_dssp ---------------------------TTCS--HHHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHHHHH
T ss_pred ---------------------------ccch--HHHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHHHHH
Confidence 1111 233333322 211110 00 23578899999999999999887
Q ss_pred hc
Q 025529 249 LS 250 (251)
Q Consensus 249 l~ 250 (251)
++
T Consensus 198 l~ 199 (215)
T 1nn5_A 198 SE 199 (215)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 54
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.55 E-value=4.7e-14 Score=118.62 Aligned_cols=165 Identities=19% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH----
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV---- 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~---- 101 (251)
+++.|+|. |++||||||+|+.|+ .+|++++++|++.+....++......+.+.+... +.+....+
T Consensus 74 ~~~iI~I~-----G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~v 147 (281)
T 2f6r_A 74 GLYVLGLT-----GISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRV 147 (281)
T ss_dssp TCEEEEEE-----ECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred CCEEEEEE-----CCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHH
Confidence 45667777 999999999999999 5899999999998876655554444433332211 11111100
Q ss_pred --------------H----HHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 102 --------------V----GIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 102 --------------~----~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
. ..+...+... .....+|+||....... + ...++.+|||++|++++.+|+
T Consensus 148 f~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~-------~~~~d~vI~l~a~~ev~~~Rl 217 (281)
T 2f6r_A 148 FGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---W-------QSMVHEVWTVVIPETEAVRRI 217 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---G-------GGGCSEEEEEECCHHHHHHHH
T ss_pred hCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---h-------HHhCCEEEEEcCCHHHHHHHH
Confidence 0 0111111111 11245888986322111 1 023689999999999999999
Q ss_pred hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHH
Q 025529 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEV 241 (251)
Q Consensus 162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev 241 (251)
..|. +.+.+.+.+|+... + +..+++... . +.||++.+++++
T Consensus 218 ~~R~---------------------------------g~s~e~~~~ri~~q---~-~~~~~~~~A-D-~vIdn~~s~eel 258 (281)
T 2f6r_A 218 VERD---------------------------------GLSEAAAQSRLQSQ---M-SGQQLVEQS-N-VVLSTLWESHVT 258 (281)
T ss_dssp HHHH---------------------------------CCCHHHHHHHHHTS---C-CHHHHHHTC-S-EEEECSSCHHHH
T ss_pred HHcC---------------------------------CCCHHHHHHHHHHc---C-ChHhhHhhC-C-EEEECCCCHHHH
Confidence 8773 22345566665443 1 123333222 2 457888899999
Q ss_pred HHHHHHHhc
Q 025529 242 TSEVQKALS 250 (251)
Q Consensus 242 ~~~i~~~l~ 250 (251)
.+.|.+.++
T Consensus 259 ~~~I~~~l~ 267 (281)
T 2f6r_A 259 QSQVEKAWN 267 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 55
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.55 E-value=2.8e-14 Score=115.23 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=105.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCC-CcCHHHHHHH-HHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLVVGI-IDEA 108 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~l-l~~~ 108 (251)
+++.|+|+ |++||||||+++.|+++++....-+ + +...++++|..+++++.... ...+....-+ ...+
T Consensus 4 ~g~~i~~e-----G~~g~GKst~~~~l~~~l~~~~~~~----~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R 73 (216)
T 3tmk_A 4 RGKLILIE-----GLDRTGKTTQCNILYKKLQPNCKLL----K-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANR 73 (216)
T ss_dssp CCCEEEEE-----ECSSSSHHHHHHHHHHHHCSSEEEE----E-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHhcccceEE----E-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 67899999 9999999999999999998632211 1 12236789999999988654 2333221111 1112
Q ss_pred HcC-------CCCCCceEEeCCCCCHHHHH--------HHHHH--HHhcCCCcCEEEEE-ecCHHHHHHHHhcCcCCCCC
Q 025529 109 MKK-------PSCQKGFILDGFPRTEVQAQ--------KLDEM--LEKQGKKVDKVLNF-AIDDAVLEERITGRWIHPSS 170 (251)
Q Consensus 109 l~~-------~~~~~~~Iidg~~~~~~~~~--------~l~~~--~~~~~~~~~~vI~L-~~~~e~~~~Rl~~r~~~~~~ 170 (251)
... +..++.+|.|.|..+-.-.. .+.++ +......||++||| ++|++++.+|+..+.
T Consensus 74 ~~~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~----- 148 (216)
T 3tmk_A 74 WEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD----- 148 (216)
T ss_dssp HTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-----
T ss_pred HHHHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-----
Confidence 210 11234567788743321110 12221 12234689999999 999999998865321
Q ss_pred CceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHH-HHHHHhhCCcEEEEc-CCCChhHHHHHHHHH
Q 025529 171 GRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP-VIDYYSKKGIVAQLH-AEKPPQEVTSEVQKA 248 (251)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~-~~~~~~~~~~~~~id-~~~~~eev~~~i~~~ 248 (251)
+ |.+ . ..+.+|+...+..+.. ... ...+.++.|| ++.++++|.+.|.+.
T Consensus 149 -d------------------------r~E-~-~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~~~I~~~ 199 (216)
T 3tmk_A 149 -E------------------------RYE-T-VKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEALIWQI 199 (216)
T ss_dssp -C------------------------TTC-C-HHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHHHHHHHH
T ss_pred -c------------------------ccc-H-HHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 0 111 1 3455555443333221 111 1235799999 899999999999887
Q ss_pred hc
Q 025529 249 LS 250 (251)
Q Consensus 249 l~ 250 (251)
|+
T Consensus 200 i~ 201 (216)
T 3tmk_A 200 VE 201 (216)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 56
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.54 E-value=3e-14 Score=111.17 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=89.9
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHH-cCCCcCHHHHHHHHHHHHcCC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKP 112 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~ll~~~l~~~ 112 (251)
.|+|. |+|||||||+++.|++++++++++.|++++.... . .+...+. .+..........++.. +.
T Consensus 6 ~i~i~-----G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~----~~~~~~~~~g~~~~~~~~~~~~~~-l~-- 71 (175)
T 1via_A 6 NIVFI-----GFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--Q----KVSEIFEQKRENFFREQEQKMADF-FS-- 71 (175)
T ss_dssp CEEEE-----CCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--S----CHHHHHHHHCHHHHHHHHHHHHHH-HT--
T ss_pred EEEEE-----cCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--C----CHHHHHHHcCHHHHHHHHHHHHHH-HH--
Confidence 47777 9999999999999999999999999998765321 1 1222221 1211111112222322 22
Q ss_pred CCCCceEEe-CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCC
Q 025529 113 SCQKGFILD-GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 191 (251)
Q Consensus 113 ~~~~~~Iid-g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~ 191 (251)
....+|++ |.+.... ..| ...+.+|||++|.+++.+|+..|...
T Consensus 72 -~~~~~vi~~g~~~~~~--~~l--------~~~~~~i~l~~~~e~~~~R~~~r~~~------------------------ 116 (175)
T 1via_A 72 -SCEKACIATGGGFVNV--SNL--------EKAGFCIYLKADFEYLKKRLDKDEIS------------------------ 116 (175)
T ss_dssp -TCCSEEEECCTTGGGS--TTG--------GGGCEEEEEECCHHHHTTCCCGGGTT------------------------
T ss_pred -ccCCEEEECCCCEehh--hHH--------hcCCEEEEEeCCHHHHHHHHhcccCC------------------------
Confidence 22345665 5432221 111 12468999999999999998766200
Q ss_pred CCcccCCCCc-HHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 192 EPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 192 ~~~~~r~~~~-~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
.|+... .+.+++.+. ....+|... ..+.||++ .+++++++.|.+.+.
T Consensus 117 ----~r~~~~~~~~i~~~~~-------~r~~~y~~~-~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 117 ----KRPLFYDEIKAKKLYN-------ERLSKYEQK-ANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp ----TSCTTCCHHHHHHHHH-------HHHHHHHHH-CSEEEECTTCCHHHHHHHHHHHHC
T ss_pred ----CCCCcccHHHHHHHHH-------HHHHHHHhc-CCEEEECCCCCHHHHHHHHHHHHH
Confidence 011211 233332221 122333321 24678998 799999999998875
No 57
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.54 E-value=4.8e-14 Score=112.64 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=92.4
Q ss_pred cccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcC-----CCcCHHHH--------------
Q 025529 41 WLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV-------------- 101 (251)
Q Consensus 41 ~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~-------------- 101 (251)
+|+|++||||||+++.|++ +|++++++|++.+....+.......+.+.+... ..+....+
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l 83 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKL 83 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHHHH
Confidence 3349999999999999999 999999999988764443333333333322211 11111111
Q ss_pred HHHHHHH--------HcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529 102 VGIIDEA--------MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 102 ~~ll~~~--------l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~ 173 (251)
..+.... +........+|+|+......... ..++.+|||++|++++.+|+..|.
T Consensus 84 ~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~----------~~~~~~i~l~~~~e~~~~Rl~~R~-------- 145 (204)
T 2if2_A 84 EEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTY----------KNYDKLIVVYAPYEVCKERAIKRG-------- 145 (204)
T ss_dssp HHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCG----------GGSSEEEEECCCHHHHHHHHHHTC--------
T ss_pred HHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCch----------hhCCEEEEEECCHHHHHHHHHHcC--------
Confidence 1111111 11111114677887422111111 236899999999999999998762
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.+.+.+.+++... . +...++... . +.||++.+++++.+.|.+.++
T Consensus 146 --------------------------~~~~~~~~~~~~~---~-~~~~~~~~a-d-~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 146 --------------------------MSEEDFERRWKKQ---M-PIEEKVKYA-D-YVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp --------------------------CCHHHHHHHHTTS---C-CHHHHGGGC-S-EECCCSSCHHHHHHHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHhC---C-ChhHHHhcC-C-EEEECCCCHHHHHHHHHHHHH
Confidence 1223455555432 2 122333322 2 468988999999999998774
No 58
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.54 E-value=5.7e-13 Score=105.98 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=90.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh----HHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG----DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 108 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~----~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~ 108 (251)
|.|+|+ |++||||||+++.|+++++..++... .+++.............. .......+ ..
T Consensus 1 ~~I~i~-----G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~r~-~~ 64 (205)
T 2jaq_A 1 MKIAIF-----GTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQ----------IYMLTARS-KQ 64 (205)
T ss_dssp CEEEEE-----CCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHH----------HHHHHHHH-HH
T ss_pred CEEEEE-----CCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHH----------HHHHHHHH-HH
Confidence 456777 99999999999999999998766431 111111100000000000 00011111 11
Q ss_pred HcCCCCCCceEEeCCCCCHHH---------------HHHHHHHHHhc----------CCCcCEEEEEecCHHHHHHHHhc
Q 025529 109 MKKPSCQKGFILDGFPRTEVQ---------------AQKLDEMLEKQ----------GKKVDKVLNFAIDDAVLEERITG 163 (251)
Q Consensus 109 l~~~~~~~~~Iidg~~~~~~~---------------~~~l~~~~~~~----------~~~~~~vI~L~~~~e~~~~Rl~~ 163 (251)
+........+|+|+++....- ...+..++... ...++.+|+|++|++++.+|+..
T Consensus 65 ~~~~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~ 144 (205)
T 2jaq_A 65 LKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKK 144 (205)
T ss_dssp HC------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHHhhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHH
Confidence 222212235889988764211 11111221111 24689999999999999999987
Q ss_pred CcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHH
Q 025529 164 RWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTS 243 (251)
Q Consensus 164 r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~ 243 (251)
|. +.+. . ..+ ....+++..++. .+.+.|......+.||++.+++++++
T Consensus 145 R~------r~~~---------------------~-~~~-~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~ 192 (205)
T 2jaq_A 145 RG------RSEE---------------------L-LIG-EEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIE 192 (205)
T ss_dssp HT------CHHH---------------------H-HSC-HHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHH
T ss_pred cC------Chhh---------------------h-cCc-HHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHH
Confidence 62 1000 0 001 133444444433 23444542345788999999999999
Q ss_pred HHHHHhc
Q 025529 244 EVQKALS 250 (251)
Q Consensus 244 ~i~~~l~ 250 (251)
.|.+.+.
T Consensus 193 ~I~~~l~ 199 (205)
T 2jaq_A 193 LIMNKLN 199 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 59
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.53 E-value=2.7e-14 Score=120.91 Aligned_cols=124 Identities=18% Similarity=0.167 Sum_probs=79.0
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
+.|++. |+|||||||+++.|++++ ++.+++.|. ++......+. +.. ..+...+.......+...+...+..
T Consensus 3 ~~I~l~-----G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (301)
T 1ltq_A 3 KIILTI-----GCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYG 74 (301)
T ss_dssp EEEEEE-----CCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhh
Confidence 467777 999999999999999985 999999984 5554432111 100 0000000000112233344444422
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
...+.++|+|+++....+...+.++....+. +..+|+|++|.+++.+|+..|.
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~-~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGW-KVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CTTCCEEEECSCCCCHHHHHHHHHHHHHTTC-EEEEEECCCCHHHHHHHHHHCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHHhcc
Confidence 1345689999999887777777665544433 3589999999999999999885
No 60
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.53 E-value=9.8e-14 Score=115.32 Aligned_cols=163 Identities=18% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH---hCCcee--chhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE---YCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~---~~~~~i--~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
+++.|++. |+|||||||+++.|++. +|+.++ +.|.+. .......+.+... ........+
T Consensus 3 ~~~lIvl~-----G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e~~----------~~~~~~~~i 66 (260)
T 3a4m_A 3 DIMLIILT-----GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYEEF----------IKKSTYRLI 66 (260)
T ss_dssp CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGHHH----------HHHHHHHHH
T ss_pred CCEEEEEE-----cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHHHH----------HHHHHHHHH
Confidence 46678888 99999999999999998 688877 766543 2111111111110 011112233
Q ss_pred HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCC
Q 025529 106 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPG 185 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~ 185 (251)
...+. . ..+|+|+.+........+....... ..++.+|+|++|++++.+|+..|..
T Consensus 67 ~~~l~---~-~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~------------------- 122 (260)
T 3a4m_A 67 DSALK---N-YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGE------------------- 122 (260)
T ss_dssp HHHHT---T-SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTC-------------------
T ss_pred HHHhh---C-CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCC-------------------
Confidence 33332 2 5789999777666666555544433 3468999999999999999988730
Q ss_pred CCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC--ChhHHHHHHHHHhc
Q 025529 186 VDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK--PPQEVTSEVQKALS 250 (251)
Q Consensus 186 ~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~--~~eev~~~i~~~l~ 250 (251)
....+.+++....|..-. ..|.-....+.||++. +++++++.|.+.+.
T Consensus 123 -------------~~~~~~l~~~~~~~e~~~----~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 123 -------------KIPNEVIKKMYEKFDEPG----KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp -------------SSCHHHHHHHHHHCCCTT----SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred -------------CCCHHHHHHHHHHhcCcc----ccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 112344444434332111 1111012456789876 89999999988764
No 61
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.52 E-value=1e-13 Score=110.72 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=91.6
Q ss_pred ccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH----cCCch--HHHHHHHHH-----------------cCCCcCH
Q 025529 42 LAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPL--GIKAKEAMD-----------------KGELVSD 98 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~----~~~~~--~~~i~~~l~-----------------~~~~~~~ 98 (251)
|+|++||||||+++.|++.+|+++++.|.+.+.... .+.+. ...+...+. .|..++.
T Consensus 7 i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 86 (208)
T 3ake_A 7 IDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTS 86 (208)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEECGG
T ss_pred EECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCeeCch
Confidence 349999999999999999999999999998876532 12211 011111111 1111110
Q ss_pred ----H-------------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 99 ----D-------------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 99 ----~-------------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
. .+.+.+...+.... .++|++|.... . . ....++++|||++|++++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~-~--------~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 87 FLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--T-A--------VFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp GSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--C-C--------CCTTCSEEEEEECCHHHHHHHH
T ss_pred hhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--E-E--------EecCCcEEEEEECCHHHHHHHH
Confidence 0 01111222211222 57888886432 0 0 1124689999999999999999
Q ss_pred hcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCC-ChhH
Q 025529 162 TGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEK-PPQE 240 (251)
Q Consensus 162 ~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~-~~ee 240 (251)
..|. ..+.+.+.+++..-...... ++......+.||++. ++++
T Consensus 154 ~~r~---------------------------------~~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~~ee 197 (208)
T 3ake_A 154 ARER---------------------------------PQAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMTLDE 197 (208)
T ss_dssp HHTS---------------------------------SSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHH
T ss_pred Hhhc---------------------------------ccCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCCHHH
Confidence 8763 12234455444421111110 001122346889985 9999
Q ss_pred HHHHHHHHhc
Q 025529 241 VTSEVQKALS 250 (251)
Q Consensus 241 v~~~i~~~l~ 250 (251)
+++.|.+.++
T Consensus 198 ~~~~I~~~~~ 207 (208)
T 3ake_A 198 VVAWVLAHIR 207 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.52 E-value=3.9e-14 Score=113.04 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=94.1
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHH-------
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD------- 99 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~------- 99 (251)
|...++..++|+ |++||||||+++.|+..+|..+++.+++..... . .....+....+.
T Consensus 24 m~~~~g~~i~l~-----G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~ 88 (200)
T 4eun_A 24 MTGEPTRHVVVM-----GVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLR 88 (200)
T ss_dssp ----CCCEEEEE-----CCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHH
T ss_pred hcCCCCcEEEEE-----CCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHH
Confidence 344567789999 999999999999999999999999887632110 0 001112111111
Q ss_pred HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCC
Q 025529 100 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFA 179 (251)
Q Consensus 100 ~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~ 179 (251)
.+...+...+. ....+|+|...........+. .. ..+..+|+|++|.+++.+|+..|..+.
T Consensus 89 ~~~~~~~~~~~---~g~~viid~~~~~~~~~~~l~----~~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~----------- 149 (200)
T 4eun_A 89 SLAEWMDARAD---AGVSTIITCSALKRTYRDVLR----EG-PPSVDFLHLDGPAEVIKGRMSKREGHF----------- 149 (200)
T ss_dssp HHHHHHHHHHH---TTCCEEEEECCCCHHHHHHHT----TS-SSCCEEEEEECCHHHHHHHHTTCSCCS-----------
T ss_pred HHHHHHHHHHh---cCCCEEEEchhhhHHHHHHHH----Hh-CCceEEEEEeCCHHHHHHHHHhcccCC-----------
Confidence 11122222221 234678876544443333322 21 224578999999999999998885211
Q ss_pred CCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 180 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 180 ~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
...+.++..+..+ ..+|.. ...+.||++.++++++++|.+.|.
T Consensus 150 --------------------~~~~~l~~~~~~~-------~~~~~~-~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 150 --------------------MPASLLQSQLATL-------EALEPD-ESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp --------------------SCGGGHHHHHHHC-------CCCCTT-SCEEEEETTSCHHHHHHHHHHHHC
T ss_pred --------------------CCHHHHHHHHHHh-------CCCCCC-CCeEEEECCCCHHHHHHHHHHHHH
Confidence 1112222222221 111221 146789999999999999998875
No 63
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.51 E-value=8.1e-14 Score=115.03 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=97.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-CCCcCHHHHHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~ll~~~l~ 110 (251)
+..|+|+ |++||||||+++.|++.+|+++++++.+++.... +..+..++.. |.......-.+.+.....
T Consensus 48 g~~i~l~-----G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~ 117 (250)
T 3nwj_A 48 GRSMYLV-----GMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREKETEALKKLSL 117 (250)
T ss_dssp TCCEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-----CCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHHHHHHHHHHHh
Confidence 6789999 9999999999999999999999999998876431 2223333322 222222222223333222
Q ss_pred CCCCCCceEEeC--CCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 111 KPSCQKGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 111 ~~~~~~~~Iidg--~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
.. ...+|.+| .+.....+..+. .+.+|||++|.+++.+|+..+...
T Consensus 118 ~~--~~~Via~GgG~v~~~~~~~~l~---------~~~vV~L~a~~e~l~~Rl~~~~~~--------------------- 165 (250)
T 3nwj_A 118 MY--HQVVVSTGGGAVIRPINWKYMH---------KGISIWLDVPLEALAHRIAAVGTG--------------------- 165 (250)
T ss_dssp HC--SSEEEECCGGGGGSHHHHHHHT---------TSEEEEEECCHHHHHHHHHC-------------------------
T ss_pred hc--CCcEEecCCCeecCHHHHHHHh---------CCcEEEEECCHHHHHHHHhhcCCC---------------------
Confidence 11 22344444 333333333221 268999999999999999863210
Q ss_pred CCCCCccc---CCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEE----------cC-CCChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQ---RKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQL----------HA-EKPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~---r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~i----------d~-~~~~eev~~~i~~~l~ 250 (251)
.+... ++++..+....++........+ .|.....++.+ |+ +.+++++++.|.+.|.
T Consensus 166 ---~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~ 235 (250)
T 3nwj_A 166 ---SRPLLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ 235 (250)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred ---CCCcccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence 00000 1122223334455554444444 45444455533 55 4899999999988764
No 64
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.51 E-value=2.1e-12 Score=100.56 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=91.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCH-------HHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVV 102 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~ 102 (251)
.++..++++ |++||||||+++.|+..+|..+++.+++.... .+... ..|..+.+ ..+.
T Consensus 6 ~~g~~i~l~-----G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~~ 70 (175)
T 1knq_A 6 HDHHIYVLM-----GVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQALN 70 (175)
T ss_dssp TTSEEEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEE-----cCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHHH
Confidence 456778888 99999999999999999999999998763210 00000 01111111 1111
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCC
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP 181 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~-~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p 181 (251)
..+...+. ....+|+|........... +... .++ .+|+|++|++++.+|+..|..+
T Consensus 71 ~~~~~~~~---~~~~~vi~~~~~~~~~~~~----l~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~-------------- 127 (175)
T 1knq_A 71 DAAFAMQR---TNKVSLIVCSALKKHYRDL----LREG--NPNLSFIYLKGDFDVIESRLKARKGH-------------- 127 (175)
T ss_dssp HHHHHHHH---HCSEEEEECCCCSHHHHHH----HHTT--CTTEEEEEEECCHHHHHHHHHTSTTC--------------
T ss_pred HHHHHHHh---cCCcEEEEeCchHHHHHHH----HHhc--CCCEEEEEEECCHHHHHHHHHhccCC--------------
Confidence 22222221 1346788743222322222 2222 234 7999999999999999987411
Q ss_pred CCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 182 KVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 182 ~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
......++..+..+. +. +|.. ...+.||++.+++++.++|.+.+.
T Consensus 128 -----------------~~~~~~~~~~~~~~~----~~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 128 -----------------FFKTQMLVTQFETLQ----EP--GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp -----------------CCCHHHHHHHHHHCC----CC--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHhhh----Cc--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 011223333322211 10 1221 235788999999999999998875
No 65
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.50 E-value=1.7e-13 Score=111.10 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=71.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH----cCCchH--HHHHHHHH--------------
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPLG--IKAKEAMD-------------- 91 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~----~~~~~~--~~i~~~l~-------------- 91 (251)
++.|.|. |++||||||+++.|++.+|+++++.|++.+.... .+.++. ....+...
T Consensus 5 ~~~i~i~-----G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
T 1cke_A 5 APVITID-----GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLE 79 (227)
T ss_dssp SCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEE
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCce
Confidence 4567778 9999999999999999999999999999886542 333221 12222211
Q ss_pred ---cCCCcCHH-----------------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe
Q 025529 92 ---KGELVSDD-----------------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA 151 (251)
Q Consensus 92 ---~~~~~~~~-----------------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~ 151 (251)
.+..+++. .+...+...........++|+||+.... . .-..++++|||+
T Consensus 80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~--~---------~~~~~d~~i~l~ 148 (227)
T 1cke_A 80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT--V---------VFPDAPVKIFLD 148 (227)
T ss_dssp EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC--C---------CCTTCSEEEEEE
T ss_pred EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc--e---------EecCCCEEEEEe
Confidence 11111111 1122222222222345689999873211 0 013578999999
Q ss_pred cCHHHHHHHHh
Q 025529 152 IDDAVLEERIT 162 (251)
Q Consensus 152 ~~~e~~~~Rl~ 162 (251)
+|.+++.+|..
T Consensus 149 ~~~e~~~~R~~ 159 (227)
T 1cke_A 149 ASSEERAHRRM 159 (227)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999954
No 66
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.49 E-value=2.7e-13 Score=105.24 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=83.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
++.|+|+ |++||||||+++.|+..++.++++.|.+++... +...+..... .|.......-..++.. +..
T Consensus 4 ~~~i~l~-----G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~ 72 (173)
T 1kag_A 4 KRNIFLV-----GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE 72 (173)
T ss_dssp CCCEEEE-----CCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh
Confidence 3467777 999999999999999999999999998876532 1222211110 0000000001122222 211
Q ss_pred CCCCCceEEe---CCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCC
Q 025529 112 PSCQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 188 (251)
Q Consensus 112 ~~~~~~~Iid---g~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~ 188 (251)
...+++. +.+........+. .++.+++|+++++++.+|+..|..++
T Consensus 73 ---~~~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~~r~-------------------- 121 (173)
T 1kag_A 73 ---KQGIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKKRP-------------------- 121 (173)
T ss_dssp ---SSSEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC------C--------------------
T ss_pred ---CCCeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCCCC--------------------
Confidence 2345553 2222222222222 13679999999999999998763110
Q ss_pred CCCCCcccCCCCc-HHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCC-CChhHHHHHHHHHhc
Q 025529 189 VTGEPLIQRKDDT-AAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAE-KPPQEVTSEVQKALS 250 (251)
Q Consensus 189 ~~~~~~~~r~~~~-~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~-~~~eev~~~i~~~l~ 250 (251)
+. ...+. .+.++..+.. ..+ +|.... .+.||++ .+++++++.|.+.++
T Consensus 122 -----~~-~~~~~~~~~~~~~~~~----r~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 122 -----LL-HVETPPREVLEALANE----RNP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp -----CS-SSSCCCHHHHHHHHHH----HHH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred -----CC-CCCCchHHHHHHHHHH----HHH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 00 11222 3334333221 122 222212 3568887 799999999998875
No 67
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.48 E-value=5.6e-13 Score=106.04 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=93.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc---CCCcCHHHHH----
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK---GELVSDDLVV---- 102 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~---- 102 (251)
.+++.|+|. |++||||||+++.|++. |+++++.|++.+... ++.+ ..+.+.+.. ...+....+.
T Consensus 6 ~~~~~I~i~-----G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~ 76 (203)
T 1uf9_A 6 KHPIIIGIT-----GNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVF 76 (203)
T ss_dssp CCCEEEEEE-----ECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHT
T ss_pred cCceEEEEE-----CCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 356677777 99999999999999998 999999999887655 2222 222222200 1122222111
Q ss_pred --------------HHH-HHHHcCC-CC-CCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 103 --------------GII-DEAMKKP-SC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 103 --------------~ll-~~~l~~~-~~-~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..+ ...+... .. ...+|+|+ |..... .+ ...++.+|+|++|++++.+|+..|.
T Consensus 77 ~~~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~-------~~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 77 SDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GW-------EGRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TC-------GGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cc-------hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 0111111 12 34567775 322111 00 0236899999999999999998762
Q ss_pred CCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHH
Q 025529 166 IHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEV 245 (251)
Q Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i 245 (251)
..+.+.+..++... .. ...++...+ +.||++.+++++++.|
T Consensus 147 ---------------------------------~~~~~~~~~~i~~~---~~-~~~~~~~ad--~vId~~~~~~~~~~~i 187 (203)
T 1uf9_A 147 ---------------------------------GLSREEVLARERAQ---MP-EEEKRKRAT--WVLENTGSLEDLERAL 187 (203)
T ss_dssp ---------------------------------CCTTHHHHHHHTTS---CC-HHHHHHHCS--EEECCSSHHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHC---CC-hhHHHHhCC--EEEECCCCHHHHHHHH
Confidence 11123444444331 11 122222222 3688888999999999
Q ss_pred HHHhc
Q 025529 246 QKALS 250 (251)
Q Consensus 246 ~~~l~ 250 (251)
.+.+.
T Consensus 188 ~~~~~ 192 (203)
T 1uf9_A 188 KAVLA 192 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.47 E-value=3.4e-13 Score=107.83 Aligned_cols=168 Identities=11% Similarity=0.066 Sum_probs=89.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchH-HHHHHHHHcCC-Cc------------CH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMDKGE-LV------------SD 98 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~-~~i~~~l~~~~-~~------------~~ 98 (251)
+.|.|. |++||||||+++.||+++|+++++ +++++..... .... ..+...-+... .. ..
T Consensus 7 ~iI~i~-----g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 79 (201)
T 3fdi_A 7 IIIAIG-----REFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE 79 (201)
T ss_dssp CEEEEE-----ECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------
T ss_pred eEEEEe-----CCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence 456666 999999999999999999999999 7777652211 1110 00111000000 00 00
Q ss_pred HHHHHHHHHHHcCCC--CCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecc
Q 025529 99 DLVVGIIDEAMKKPS--CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 176 (251)
Q Consensus 99 ~~~~~ll~~~l~~~~--~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~ 176 (251)
..+.....+.+.... ...++|++|..-.. ++.. ..-.+.|||++|.+++.+|+..+.
T Consensus 80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~--------vl~~--~~~~~~V~L~A~~e~r~~R~~~~~----------- 138 (201)
T 3fdi_A 80 QDIAIRQFNFIRKKANEEKESFVIVGRCAEE--------ILSD--NPNMISAFILGDKDTKTKRVMERE----------- 138 (201)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCEEEESTTHHH--------HTTT--CTTEEEEEEEECHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEECCcch--------hcCC--CCCeEEEEEECCHHHHHHHHHHHh-----------
Confidence 001112222222222 23468888752111 1111 112489999999999999998652
Q ss_pred cCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh------CCcEEEEcCC-CChhHHHHHHHHHh
Q 025529 177 KFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK------KGIVAQLHAE-KPPQEVTSEVQKAL 249 (251)
Q Consensus 177 ~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~------~~~~~~id~~-~~~eev~~~i~~~l 249 (251)
+.+.+...+++........+.+..|.. ...-+.||++ .+++++++.|.+.+
T Consensus 139 ----------------------~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i 196 (201)
T 3fdi_A 139 ----------------------GVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI 196 (201)
T ss_dssp ----------------------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence 112344444444433333433333310 0112567775 69999999999887
Q ss_pred c
Q 025529 250 S 250 (251)
Q Consensus 250 ~ 250 (251)
+
T Consensus 197 ~ 197 (201)
T 3fdi_A 197 D 197 (201)
T ss_dssp H
T ss_pred H
Confidence 5
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.46 E-value=4.3e-14 Score=116.92 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=95.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc----------eechhHHHHHHHHcCCchHHHHHHHHHc-----C
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC----------HLATGDMLRAAVAAKTPLGIKAKEAMDK-----G 93 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~----------~i~~~~li~~~~~~~~~~~~~i~~~l~~-----~ 93 (251)
+.+++.|.|. |++||||||+|+.|++.+|++ ++++|++.+.. . .+...+..... .
T Consensus 19 ~~~~~iI~I~-----G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~----~-~~~~~~~~~g~~~f~~~ 88 (252)
T 1uj2_A 19 GGEPFLIGVS-----GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----T-SEQKAKALKGQFNFDHP 88 (252)
T ss_dssp --CCEEEEEE-----CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----C-HHHHHHHHTTCSCTTSG
T ss_pred CCCcEEEEEE-----CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc----C-hhhhhhhccCCCCCCCc
Confidence 4456677777 999999999999999999987 78999876421 0 01101111110 0
Q ss_pred CCcCHHHHHHHHHHHHcC---------------------CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEec
Q 025529 94 ELVSDDLVVGIIDEAMKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 152 (251)
Q Consensus 94 ~~~~~~~~~~ll~~~l~~---------------------~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~ 152 (251)
.......+...+...... ......+|+||.+.... ..+.. .++.+|||++
T Consensus 89 ~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~-------~~d~vi~l~~ 159 (252)
T 1uj2_A 89 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD-------LFQMKLFVDT 159 (252)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH-------HCSEEEEEEC
T ss_pred chhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH-------hcCeeEEEeC
Confidence 111122233344333211 01234688999654211 11111 2578999999
Q ss_pred CHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHh-ccHHHH-HHHhhCCcEE
Q 025529 153 DDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK-QTEPVI-DYYSKKGIVA 230 (251)
Q Consensus 153 ~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~-~~~~~~-~~~~~~~~~~ 230 (251)
|++++++|+..|... .+ +.+.+.+.+++..... ...... .+....+.++
T Consensus 160 ~~e~~~~R~~~R~~~----------------------------~r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 160 DADTRLSRRVLRDIS----------------------------ER-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp CHHHHHHHHHHHHHH----------------------------HS-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred CHHHHHHHHHHHHHh----------------------------hh-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 999999999876310 01 2244555555433111 011000 1111122333
Q ss_pred --EEcCCCChhHHHHHHHHHhc
Q 025529 231 --QLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 231 --~id~~~~~eev~~~i~~~l~ 250 (251)
.||++.+++++++.|.+.+.
T Consensus 211 ~~~id~~~s~e~v~~~I~~~l~ 232 (252)
T 1uj2_A 211 PRGADNLVAINLIVQHIQDILN 232 (252)
T ss_dssp ETGGGCHHHHHHHHHHHHHHHH
T ss_pred ecCCCChhHHHHHHHHHHHHHc
Confidence 34888899999999988775
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.44 E-value=1.2e-12 Score=102.43 Aligned_cols=109 Identities=24% Similarity=0.289 Sum_probs=68.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 110 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~ 110 (251)
+++.|++. |+|||||||+++.|++.+++.+++++++++.. ......+... .........+...+...+.
T Consensus 10 ~~~~i~i~-----G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 78 (180)
T 3iij_A 10 LLPNILLT-----GTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMR 78 (180)
T ss_dssp CCCCEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHH
T ss_pred cCCeEEEE-----eCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHh
Confidence 45678888 99999999999999999999999999987764 1000000000 0001112223333333332
Q ss_pred CCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 111 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 111 ~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
. .++|+|......... ..++.+|||++|.+++.+|+..|.
T Consensus 79 ~----g~~vv~~~~~~~~~~-----------~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 79 E----GGVIVDYHGCDFFPE-----------RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp H----CCEEEECSCCTTSCG-----------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred c----CCEEEEechhhhcch-----------hcCCEEEEEECCHHHHHHHHHHcC
Confidence 2 367777543221100 126799999999999999999874
No 71
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.43 E-value=1.2e-12 Score=106.19 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=91.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHc-------------------
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK------------------- 92 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~------------------- 92 (251)
.+.|.|. |++||||||+++.|++++|+++++ .++++.......---..+.+..+.
T Consensus 14 ~~iI~i~-----g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~ 87 (223)
T 3hdt_A 14 NLIITIE-----REYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS 87 (223)
T ss_dssp CEEEEEE-----ECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC--------------------------------
T ss_pred CeEEEEe-----CCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence 3456666 999999999999999999999999 566666444221000011110000
Q ss_pred ------CCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 93 ------GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 93 ------~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
.... ++.+.....+.+.......++|+.|..-... +. .+.. ..-.+.|||++|.+++.+|+..+.
T Consensus 88 ~~~~~~~~~~-~~~~f~~~~~~i~~la~~~~~Vi~Grggg~v----l~-~~~~--~~~~~~VfL~A~~e~r~~Ri~~~~- 158 (223)
T 3hdt_A 88 KPSPNDKLTS-PENLFKFQSEVMRELAESEPCIFVGRAAGYV----LD-QDED--IERLIRIFVYTDKVKKVQRVMEVD- 158 (223)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHH----HH-HCTT--CCEEEEEEEECCHHHHHHHHHHHH-
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHhCCCEEEEeCCcchh----cc-cccC--CCCeEEEEEECCHHHHHHHHHHhc-
Confidence 0001 1111111112222222224577776532111 10 0011 122589999999999999998653
Q ss_pred CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhh------CCcEEEEcCC-CChh
Q 025529 167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSK------KGIVAQLHAE-KPPQ 239 (251)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~------~~~~~~id~~-~~~e 239 (251)
+.+.+...+++........+.+.+|-. ...=+.||++ .+++
T Consensus 159 --------------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~e 206 (223)
T 3hdt_A 159 --------------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLE 206 (223)
T ss_dssp --------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHH
Confidence 112244555555444444444443310 1112467775 7999
Q ss_pred HHHHHHHHHhc
Q 025529 240 EVTSEVQKALS 250 (251)
Q Consensus 240 ev~~~i~~~l~ 250 (251)
++++.|.+.++
T Consensus 207 evv~~I~~~i~ 217 (223)
T 3hdt_A 207 ETAELIKAYIR 217 (223)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 72
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.42 E-value=8.7e-14 Score=111.46 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=94.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceechhHHHHHHHHcCCchHHHHHHHHHc-C--CCcCHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-G--ELVSDDLVVGII 105 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~-~--~~~~~~~~~~ll 105 (251)
.++..+.+. |++||||||+++.|++.+ ++.+++.|+++..... . ..+. ..+.. . ..+....+...+
T Consensus 19 ~~~~~i~i~-----G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~l~~~i 88 (207)
T 2qt1_A 19 SKTFIIGIS-----GVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-I-ETDK---NGFLQYDVLEALNMEKMMSAI 88 (207)
T ss_dssp CCCEEEEEE-----ESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-S-CBCT---TSCBCCSSGGGBCHHHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-h-hccc---cCCChhHHHHHhHHHHHHHHH
Confidence 455667777 999999999999999998 8999999876542100 0 0000 00000 0 001111222222
Q ss_pred HHHHcC------------CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCce
Q 025529 106 DEAMKK------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRT 173 (251)
Q Consensus 106 ~~~l~~------------~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~ 173 (251)
...+.. ......+|+||.+... ...+ ...++.+|+++++++++.+|+..|...
T Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~-------~~~~d~~i~l~~~~~~~~~R~~~R~~~------ 153 (207)
T 2qt1_A 89 SCWMESARHSVVSTDQESAEEIPILIIEGFLLFN--YKPL-------DTIWNRSYFLTIPYEECKRRRSTRVYQ------ 153 (207)
T ss_dssp HHHHHHHTTSSCCC-----CCCCEEEEECTTCTT--CGGG-------TTTCSEEEEEECCHHHHHHHHHHSCCS------
T ss_pred HHHHhCCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHH-------HHhcCeeEEEECCHHHHHHHHHHcCCC------
Confidence 211110 1123468899965332 1111 145789999999999999999766310
Q ss_pred ecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH-HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 174 YHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK-SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~-~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.+.....+. +....| ....+.+.. .+.++.||++.+++++.++|.+.++
T Consensus 154 ------------------------~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 154 ------------------------PPDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp ------------------------SCCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred ------------------------ccchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 011011122 111222 223334443 3567889999999999999998875
No 73
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.38 E-value=1.9e-12 Score=102.64 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=36.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 78 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~ 78 (251)
.+.|.+. |++||||||+++.|++.+|++++++|++.++...+
T Consensus 12 ~~iIglt-----G~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 12 HMVIGVT-----GKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 3445555 99999999999999999999999999998887664
No 74
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.37 E-value=2.2e-12 Score=105.50 Aligned_cols=42 Identities=36% Similarity=0.531 Sum_probs=37.3
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+.+++.|.|. |++||||||+++.|++.+|+++++.|++.+..
T Consensus 13 ~~~~~~i~i~-----G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAID-----GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEE-----CSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEE-----CCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 4567788888 99999999999999999999999999998764
No 75
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.36 E-value=5.4e-12 Score=99.22 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI 104 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l 104 (251)
.+++.|+++ |++||||||+++.|++.++ +.+++.+.+ +..+.....+...-+ ...+..+
T Consensus 11 ~~~~~i~l~-----G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r----------~~~~~~~ 74 (186)
T 2yvu_A 11 EKGIVVWLT-----GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREER----------LRHLKRI 74 (186)
T ss_dssp SCCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHH----------HHHHHHH
T ss_pred CCCcEEEEE-----cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhH----------HHHHHHH
Confidence 457788888 9999999999999999884 345665544 332211100000000 0011111
Q ss_pred --HHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 105 --IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 105 --l~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
+...+. ..+..+|+|++.........+..++...+ .++.+|||++|++++.+|+.
T Consensus 75 ~~~~~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 75 AWIARLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHHHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred HHHHHHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence 111111 12233556776544444444444444433 57899999999999999974
No 76
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.36 E-value=7.3e-13 Score=110.10 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=51.2
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhc--cHHH
Q 025529 142 KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQ--TEPV 219 (251)
Q Consensus 142 ~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~--~~~~ 219 (251)
..||++|+|++|++++.+|+..|.. .++. ....+..+.+..++..|... ..+.
T Consensus 173 ~~pd~vi~L~~~~e~~~~Ri~~R~r------~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~v~~~ 227 (263)
T 1p5z_B 173 LELDGIIYLQATPETCLHRIYLRGR------NEEQ-------------------GIPLEYLEKLHYKHESWLLHRTLKTN 227 (263)
T ss_dssp HCCSEEEEEECCHHHHHHHHHHHCC------GGGT-------------------TCCHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred CCCCeEEEEECCHHHHHHHHHhcCC------cccc-------------------CccHHHHHHHHHHHHHHHhhccchhh
Confidence 4689999999999999999987631 1110 01112233344444444321 1111
Q ss_pred HHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 220 IDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 220 ~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
...+.. +.++.||++.+++++++.|.+.|.
T Consensus 228 y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~ 257 (263)
T 1p5z_B 228 FDYLQE-VPILTLDVNEDFKDKYESLVEKVK 257 (263)
T ss_dssp CGGGGG-SCEEEEECCSCHHHHHHHHHHHHH
T ss_pred hhhhcc-CCEEEEECCCCHHHHHHHHHHHHH
Confidence 122222 358899999999999999998774
No 77
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.35 E-value=2e-11 Score=100.83 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=36.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
.+++.|.|. ||+||||||+++.|++++|+.+++.+.+.+..
T Consensus 25 ~~g~~I~I~-----G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 25 AIAPVITVD-----GPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TTSCEEEEE-----CCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 356678888 99999999999999999999999999988654
No 78
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.35 E-value=2.8e-12 Score=103.41 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
++.|+|. |++||||||+++.|++.+|+++++.|.+++..
T Consensus 3 ~~~i~i~-----G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALD-----GPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEE-----CCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 4567777 99999999999999999999999999998764
No 79
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.34 E-value=5.9e-11 Score=94.76 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHH---cCCc----hHHHHHHHHHcCCCcCHH--
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVA---AKTP----LGIKAKEAMDKGELVSDD-- 99 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~---~~~~----~~~~i~~~l~~~~~~~~~-- 99 (251)
.+++.|+|+ ||+||||||+++.|++.++- ..++..+..|+... .+.. -...+...+.++..+...
T Consensus 10 ~~~~~i~l~-----G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (204)
T 2qor_A 10 ARIPPLVVC-----GPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKY 84 (204)
T ss_dssp CCCCCEEEE-----CCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCEEEEE-----CCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHh
Confidence 367788999 99999999999999998842 11111110000000 0000 001111222222211100
Q ss_pred ------HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEe-cCHHHHHHHHhcCcCCCCCC
Q 025529 100 ------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFA-IDDAVLEERITGRWIHPSSG 171 (251)
Q Consensus 100 ------~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~-~~~vI~L~-~~~e~~~~Rl~~r~~~~~~~ 171 (251)
.....+...+. .++.+|+|+.+... ..+.. .... ...+|||+ +|.+++.+|+..|.
T Consensus 85 ~~~~~~~~~~~i~~~l~---~g~~vi~d~~~~~~---~~l~~----~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------ 148 (204)
T 2qor_A 85 ANNFYGTLKSEYDLAVG---EGKICLFEMNINGV---KQLKE----SKHIQDGIYIFVKPPSIDILLGRLKNRN------ 148 (204)
T ss_dssp TTEEEEEEHHHHHHHHH---TTCEEEEECCHHHH---HHHHH----CSSCSCCEEEEEECSCHHHHHHHHHTCT------
T ss_pred CCCeecCCHHHHHHHHH---cCCeEEEEECHHHH---HHHHH----hcCCCCeEEEEEcCCCHHHHHHHHHHcC------
Confidence 00012222222 24578898754332 22221 1110 13789998 99999999998773
Q ss_pred ceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 172 RTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++.+.+++|+..++....+. +...-.++.+| + ++++++++|.+.|.
T Consensus 149 ---------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~ 195 (204)
T 2qor_A 149 ---------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLL 195 (204)
T ss_dssp ---------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHH
T ss_pred ---------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHH
Confidence 235577888887765433221 22222344344 4 89999999988874
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.34 E-value=2.2e-12 Score=103.67 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC------CceechhHHHHHHHHcCCchHHHHH-HHHHcCCCcCHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLV 101 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~------~~~i~~~~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~ 101 (251)
..+++.|+++ |++||||||+++.|++.++ +.+++.+.+ +..+.....+....+ ..+ ..+
T Consensus 22 ~~~~~~i~~~-----G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~ 87 (211)
T 1m7g_A 22 NQRGLTIWLT-----GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRI 87 (211)
T ss_dssp TSSCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHH
T ss_pred CCCCCEEEEE-----CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHH
Confidence 3467889999 9999999999999999886 677775543 322211101100000 000 001
Q ss_pred HHHHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHh-----cCCCcCEEEEEecCHHHHHHHH
Q 025529 102 VGIIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 102 ~~ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~-----~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
...+...+. .+..+|+| ++.. ......+..+... ....|+.+|||++|++++.+|+
T Consensus 88 ~~~~~~~l~---~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 88 AEVAKLFAD---SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHHHH---CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 111222222 23457778 5432 1223334333321 1125789999999999999995
No 81
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.31 E-value=4.3e-10 Score=94.63 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=84.2
Q ss_pred cCCCCchhHHHHHHHHhhcc---CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh--CCceechhHHHHHHHHcCCchH
Q 025529 9 LEDVPSVDLMTELLRRMKCA---SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLG 83 (251)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~--~~~~i~~~~li~~~~~~~~~~~ 83 (251)
+.+.+...+.++....+... ..+|..|++. |||||||||+++.|++++ ++.+|+.|.+ +..... .
T Consensus 7 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~-----G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~----~ 76 (287)
T 1gvn_B 7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLG-----GQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN----F 76 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEE-----CCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT----H
T ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh----h
Confidence 33344555556666666432 2356778888 999999999999999999 7888888654 221100 0
Q ss_pred HHHHHHHHcCC-----CcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHH-
Q 025529 84 IKAKEAMDKGE-----LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL- 157 (251)
Q Consensus 84 ~~i~~~l~~~~-----~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~- 157 (251)
..+.+.+.... ..........+...+. .+..+|+|+......+...+...+...+.. ..++++.+|++.+
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~---~g~~vIld~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~~p~~~~~ 152 (287)
T 1gvn_B 77 DELVKLYEKDVVKHVTPYSNRMTEAIISRLSD---QGYNLVIEGTGRTTDVPIQTATMLQAKGYE-TKMYVMAVPKINSY 152 (287)
T ss_dssp HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH---HTCCEEECCCCCCSHHHHHHHHHHHTTTCE-EEEEEECCCHHHHH
T ss_pred HHHHHHccchhhhhhhHHHHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHhCCCc-EEEEEEECCHHHHH
Confidence 00000010000 0001112223333332 235799999888876666655555554443 3468899999999
Q ss_pred ---HHHHhcCc
Q 025529 158 ---EERITGRW 165 (251)
Q Consensus 158 ---~~Rl~~r~ 165 (251)
.+|+..|.
T Consensus 153 l~~~~Rl~~R~ 163 (287)
T 1gvn_B 153 LGTIERYETMY 163 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887663
No 82
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.26 E-value=1.8e-11 Score=101.22 Aligned_cols=145 Identities=18% Similarity=0.238 Sum_probs=87.2
Q ss_pred ccCCCCchhHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHHHHHHHHc----
Q 025529 8 NLEDVPSVDLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAA---- 78 (251)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~li~~~~~~---- 78 (251)
|+.+.+...+.+.....+.. ...+|+.|++. |+|||||||+++.|++.++ +.+++.|.+ +.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-----G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i 78 (253)
T 2p5t_B 5 DYTDSEFKHALARNLRSLTRGKKSSKQPIAILLG-----GQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLEL 78 (253)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEE-----SCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHccCCcccCCeEEEEE-----CCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHH
Confidence 45555566666666555542 22457788888 9999999999999999996 556676654 221100
Q ss_pred CCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHH
Q 025529 79 KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 158 (251)
Q Consensus 79 ~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~ 158 (251)
....|..+.++.... .......++...+. .+.++|+|+++....+...+...+...+..+ .++++++|.+++.
T Consensus 79 ~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~---~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~ 151 (253)
T 2p5t_B 79 QQEYGKDSVEYTKDF---AGKMVESLVTKLSS---LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSY 151 (253)
T ss_dssp HTTCSSTTHHHHHHH---HHHHHHHHHHHHHH---TTCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHH
T ss_pred HHHcCchHHHHhhHH---HHHHHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHH
Confidence 001111111111100 01122223332222 2347999999988877777666666655543 5668899999999
Q ss_pred HHHhcCc
Q 025529 159 ERITGRW 165 (251)
Q Consensus 159 ~Rl~~r~ 165 (251)
+|+..|.
T Consensus 152 ~R~~~R~ 158 (253)
T 2p5t_B 152 LSTLIRY 158 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
No 83
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.23 E-value=1.8e-11 Score=99.65 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=40.0
Q ss_pred cCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHH
Q 025529 140 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPV 219 (251)
Q Consensus 140 ~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~ 219 (251)
.+..||++|||++|++++++|+..|.. ..+ + . ....+.+|+..++..+.
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r------~~e---------------------~-~-~~~~~~~rv~~~~~~~~-- 191 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRAR------SEE---------------------S-C-VPLKYLQELHELHEDWL-- 191 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHCC------GGG---------------------T-T-CCHHHHHHHHHHHHHHH--
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcCC------ccc---------------------c-c-CcHHHHHHHHHHHHHHH--
Confidence 456799999999999999999986621 000 0 0 11244555554443331
Q ss_pred HHHH-hhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 220 IDYY-SKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 220 ~~~~-~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..++ ...+.++.||++.++++++++|.+.++
T Consensus 192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSES 223 (230)
T ss_dssp TSCCSSCCCEEEEEECCC--------------
T ss_pred HHhcccCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 0111 233568899999999999999988764
No 84
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.22 E-value=3.2e-10 Score=88.17 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=63.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee--chhHHHHHHHHcCC--chHHHHHHHHH-cCCCcCHHHHH---H
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKT--PLGIKAKEAMD-KGELVSDDLVV---G 103 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i--~~~~li~~~~~~~~--~~~~~i~~~l~-~~~~~~~~~~~---~ 103 (251)
++.|++. |+|||||||+++.|+++++.+++ +.|.+......... ..+..+.+... .+......... .
T Consensus 3 ~~~i~l~-----G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (178)
T 1qhx_A 3 TRMIILN-----GGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAE 77 (178)
T ss_dssp CCEEEEE-----CCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHH
Confidence 3456777 99999999999999999987655 47766543111000 00000000000 00000001111 1
Q ss_pred HHHHHHcCCCCCCceEEeCCCC-CHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 104 IIDEAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iidg~~~-~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+...+. .+..+|+|+... .......+.+.+. ..+..+|+|++|.+++.+|+..|.
T Consensus 78 ~~~~~~~---~g~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 78 GVVAMAR---AGARIIIDDVFLGGAAAQERWRSFVG---DLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHHH---TTCEEEEEECCTTTHHHHHHHHHHHT---TCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHHh---cCCeEEEEeccccChHHHHHHHHHhc---CCcEEEEEEECCHHHHHHHHHhhC
Confidence 1222221 234588888542 2222233333332 223468889999999999998874
No 85
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.19 E-value=1.1e-10 Score=91.00 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechh-HHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
.+++.|+++ |++||||||+++.|++.+ |++++.++ +.++..+.....+...- ....+.++.
T Consensus 3 ~~g~~i~l~-----G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 67 (179)
T 2pez_A 3 MRGCTVWLT-----GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIA 67 (179)
T ss_dssp -CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHH
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHH
Confidence 357788888 999999999999999998 88877554 22322111100000000 011122221
Q ss_pred HH--HHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcC
Q 025529 106 DE--AMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 164 (251)
Q Consensus 106 ~~--~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r 164 (251)
.. .+.. .. .+++.++... ......+..+....+ .|+.+|+|++|++++.+|+..+
T Consensus 68 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 68 EVAKLFAD--AG-LVCITSFISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHHHHH--TT-CEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHHHHH--CC-CEEEEecCCcchHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHHHhhh
Confidence 11 1111 11 2444444433 222223333333333 5789999999999999998653
No 86
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.17 E-value=2.1e-09 Score=87.46 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=35.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 75 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~ 75 (251)
+++.|+|. ||+||||||+++.|++++|+.+++.+.+.+..
T Consensus 8 ~~~~i~i~-----G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 8 GSLVVAVD-----GPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp -CCEEEEE-----CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 46678888 99999999999999999999999999987764
No 87
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.14 E-value=7.5e-11 Score=104.30 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=76.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 109 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l 109 (251)
..+..|++. |+|||||||+++.|++.+++.+++.|++- . ...+...+...+
T Consensus 256 ~~~~lIil~-----G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l 306 (416)
T 3zvl_A 256 PNPEVVVAV-----GFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAAL 306 (416)
T ss_dssp SSCCEEEEE-----SCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHH
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHH
Confidence 356678888 99999999999999999999999998751 0 111222222333
Q ss_pred cCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 110 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 110 ~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
. ....+|+|+......+...+..++...+.. ..+|+|++|.+++.+|+..|.
T Consensus 307 ~---~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~-~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 307 R---QGKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp H---TTCCEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEEECCCHHHHHHHHHHHH
T ss_pred h---cCCcEEEeCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCCHHHHHHHHHhhc
Confidence 2 235699999988888777777766655544 468899999999999999885
No 88
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.14 E-value=1e-09 Score=89.83 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=25.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCc
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLC 64 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~ 64 (251)
+|+.|+|. |++||||||+++.|++++ +..
T Consensus 1 ~~~~i~~~-----G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIE-----GNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEE-----ECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEE-----cCCCCCHHHHHHHHHHHcCCCe
Confidence 46788888 999999999999999998 443
No 89
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.04 E-value=3.3e-09 Score=84.26 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDM 71 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~l 71 (251)
..++..|+|+ |++||||||+++.|+..+ |.. +++.+++
T Consensus 22 ~~~g~~i~l~-----G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVT-----GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4567788899 999999999999999998 655 7777665
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.00 E-value=1.5e-09 Score=99.84 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=64.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCceechh-HHHHHHHHcCCchHHHHH-HHHHcCCCcCHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAK-EAMDKGELVSDDLVVGII 105 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~~i~~~-~li~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~ll 105 (251)
+++.|+|+ |+|||||||+++.|++++ |++++.+| +.++..+.....+....+ +.+ ..+..++
T Consensus 51 ~g~lIvLt-----GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva 117 (630)
T 1x6v_B 51 RGCTVWLT-----GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVA 117 (630)
T ss_dssp CCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred CCCEEEEE-----eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHH
Confidence 67788888 999999999999999999 88877765 444432221111110000 000 0111222
Q ss_pred HHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 106 DEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 106 ~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
...+. .+ .+++.++... ......+..++... ..++++|||++|.+++.+|+.
T Consensus 118 ~~~l~---~G-~iVI~d~~s~~~~~r~~~r~ll~~~-g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 118 KLFAD---AG-LVCITSFISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HHHHH---TT-CEEEEECCCCCHHHHHHHHHHHHTT-TCCEEEEEEECCHHHHHHHCT
T ss_pred HHHHh---CC-CEEEEeCchhhHHHHHHHHHHHHhC-CCCeEEEEEECCHHHHHHHhc
Confidence 22221 12 2333334332 22334444444333 346789999999999999976
No 91
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.93 E-value=1.2e-08 Score=92.64 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=71.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc-----eechhHHHHHHHHcCCchHHHHHHHHHcCCC----cCHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVAAKTPLGIKAKEAMDKGEL----VSDDLV 101 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~-----~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 101 (251)
.+..|+++ |.|||||||+|+.|++++++. +++.|++.+......... .++..... ....+.
T Consensus 34 ~~~lIvlv-----GlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~ 103 (520)
T 2axn_A 34 SPTVIVMV-----GLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCA 103 (520)
T ss_dssp CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHH
Confidence 45677788 999999999999999998543 367788655533221100 01100000 000111
Q ss_pred HHHHHHHHcCC--CCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHHHhcCc
Q 025529 102 VGIIDEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRW 165 (251)
Q Consensus 102 ~~ll~~~l~~~--~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~Rl~~r~ 165 (251)
...+......+ ..+..+|+|+..........+...+...+.. .++|++.|+ ++.+.+|+..|+
T Consensus 104 ~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~-v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 104 LAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFK-AFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCE-EEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCe-EEEEEEeCChHHHHHHHHHhhh
Confidence 11121111111 2345789999888888777776666555442 356677777 677778886654
No 92
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.91 E-value=1.6e-10 Score=92.55 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred CcCEEEEEecCHHHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHH
Q 025529 143 KVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDY 222 (251)
Q Consensus 143 ~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~ 222 (251)
.|+.+|+|++|++++.+|+..|.... .++. ..+.+. ...+.+++...+.. +.+.
T Consensus 132 ~~d~~i~l~~~~~~~~~R~~~R~~~~-~~~~---------------------~d~~e~-~~~~~~~~~~~~~~---~~~~ 185 (214)
T 1gtv_A 132 KPDWQVLLAVSAELAGERSRGRAQRD-PGRA---------------------RDNYER-DAELQQRTGAVYAE---LAAQ 185 (214)
T ss_dssp BCEEEEEEEEEHHHHHHHHHHHHHEB-BEEE---------------------EEEEEE-EHHHHHHHHHHHHH---HHHE
T ss_pred CCCEEEEEeCCHHHHHHHHHcccccc-cccc---------------------cccccc-cHHHHHHHHHHHHH---HHHh
Confidence 68999999999999999999874210 0000 000000 13445554332211 1111
Q ss_pred HhhCCcEEEEcCCCChhHHHHHHHH
Q 025529 223 YSKKGIVAQLHAEKPPQEVTSEVQK 247 (251)
Q Consensus 223 ~~~~~~~~~id~~~~~eev~~~i~~ 247 (251)
+. ...++.||++.+++++++.|.+
T Consensus 186 ~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 186 GW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp EE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred CC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 10 1357889999999999998854
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.90 E-value=2.7e-09 Score=97.24 Aligned_cols=127 Identities=16% Similarity=0.063 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHHHHHHcCCchHHHHHHHH
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAM 90 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~~~~~~~~~~~~~i~~~l 90 (251)
++.+.+...+......++.|++. |++||||||+++.|++.++ +.+++.|. +++.+.....+...-+...
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~-----G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~ 429 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLT-----GLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN 429 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH
T ss_pred hHHHHHHHhhccccccceEEEcc-----CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH
Confidence 45554444443334457788888 9999999999999999886 36677654 4443322111111100000
Q ss_pred HcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcC-EEEEEecCHHHHHHHHh
Q 025529 91 DKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERIT 162 (251)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~-~vI~L~~~~e~~~~Rl~ 162 (251)
-..+...+...+. .+.++|+|+..........+.+++ ..++ .+|+|++|.+++.+|+.
T Consensus 430 -------l~~i~~~~~~~l~---~G~~VI~d~~~~~~~~r~~~~~~l----~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 430 -------ILRVGFVASEIVK---HNGVVICALVSPYRSARNQVRNMM----EEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp -------HHHHHHHHHHHHH---TTCEEEEECCCCCHHHHHHHHTTS----CTTCEEEEEEECCGGGHHHHCC
T ss_pred -------HHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHHHHh----hcCCEEEEEEeCCHHHHHHHhh
Confidence 0011122222222 345688886433333223222221 1246 89999999999999975
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.88 E-value=1.5e-08 Score=80.35 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
++..++|+ ||+||||||+++.|+..+.
T Consensus 6 ~g~ii~l~-----Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIIS-----APSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEE-----CCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence 45678888 9999999999999998764
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=9e-09 Score=82.30 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++..|+|. ||+||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~-----GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLS-----GPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEE-----CCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence 356678888 9999999999999999874
No 96
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.84 E-value=4e-08 Score=77.19 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=87.5
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHHcCC----c----hHHHHHHHHHcCCCcCHH------
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKT----P----LGIKAKEAMDKGELVSDD------ 99 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~~~~----~----~~~~i~~~l~~~~~~~~~------ 99 (251)
|+|. ||+||||||+++.|.+.+.- ..+++....|. ..++. . -...+.+.+.+|..+...
T Consensus 4 IVi~-----GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~ 77 (186)
T 1ex7_A 4 IVIS-----GPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNY 77 (186)
T ss_dssp EEEE-----CCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred EEEE-----CCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCce
Confidence 6667 99999999999999888632 22333222111 00000 0 113455555555443211
Q ss_pred --HHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCCCCCCceeccc
Q 025529 100 --LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 177 (251)
Q Consensus 100 --~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~ 177 (251)
+...-+...+. .++.+|+|.-+....+.. . ..+..+..++.+-.|.+++.+|+..|.
T Consensus 78 YGt~~~~v~~~l~---~g~~vil~id~~g~~~~k---~---~~~~~~~~Ifi~pps~e~L~~RL~~Rg------------ 136 (186)
T 1ex7_A 78 YGSTVASVKQVSK---SGKTCILDIDMQGVKSVK---A---IPELNARFLFIAPPSVEDLKKRLEGRG------------ 136 (186)
T ss_dssp EEEEHHHHHHHHH---HTSEEEEECCHHHHHHHH---T---CGGGCCEEEEEECSCHHHHHHHHHHHC------------
T ss_pred eeeecceeeehhh---CCCEEEecCCHHHHHHHH---H---hcccCceEEEEeCCCHHHHHHHHHhcC------------
Confidence 00111222221 134577775433222222 1 112234445555667799999999884
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHhhCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 178 FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 178 ~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
.++.+.+++|+......... .....=.++.+| .++++.+++|.++|.
T Consensus 137 ---------------------~e~~e~i~~Rl~~a~~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 137 ---------------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF 183 (186)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence 56678999999876543321 111111344555 479999999998884
No 97
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.84 E-value=6e-08 Score=76.85 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++|+ ||+||||||+++.|+..+
T Consensus 4 ~~g~~i~l~-----G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLS-----GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEE-----CSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence 356788888 999999999999999977
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.81 E-value=1.4e-08 Score=93.04 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC----C--ceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC----L--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG 103 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~----~--~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 103 (251)
.+++.|+|. |++||||||+++.|+++++ . .+++.|. ++..+.....+...-+.. ....+..
T Consensus 394 q~~~~I~l~-----GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~-------~i~ri~~ 460 (573)
T 1m8p_A 394 TQGFTIFLT-----GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHT-------NIQRIAF 460 (573)
T ss_dssp TCCEEEEEE-----CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHH-------HHHHHHH
T ss_pred ccceEEEee-----cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHH-------HHHHHHH
Confidence 456778888 9999999999999999986 3 4555544 444322111100000000 0001112
Q ss_pred HHHHHHcCCCCCCceEEeCCCCC-HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 104 IIDEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 104 ll~~~l~~~~~~~~~Iidg~~~~-~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
++..... ....+|.+ +... ......+.+++...+ +..+|||++|.+++.+|.
T Consensus 461 v~~~~~~---~g~~VI~~-~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 461 VATELTR---AGAAVIAA-PIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HHHHHHH---TTCEEEEE-CCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHC
T ss_pred HHHHHHh---CCCEEEEE-cCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHh
Confidence 2222221 12335555 3332 233333444443322 458999999999999995
No 99
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.80 E-value=5.1e-08 Score=83.25 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
+++.|+|+ |+.||||||+++.|++.++.
T Consensus 6 ~~~fI~~E-----G~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLD-----GVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence 56889999 99999999999999999853
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.80 E-value=5.2e-08 Score=76.36 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=61.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCC-ceechhHHHHHHHHcCC-chHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKT-PLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~-~~i~~~~li~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
.++++ ||+||||||+++.|+..++. .+++.+++.... ..+. +-........ .+ .+.+.........
T Consensus 4 ii~l~-----G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~----~~-~~~l~~~~~~~~~- 71 (189)
T 2bdt_A 4 LYIIT-----GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELLA----LT-WKNITDLTVNFLL- 71 (189)
T ss_dssp EEEEE-----CSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHH----HH-HHHHHHHHHHHHH-
T ss_pred EEEEE-----CCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHHH----HH-HHHHHHHHHHHHh-
Confidence 45566 99999999999999998764 678877653210 0000 0000000000 00 0111111111111
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCC-cCEEEEEecCHHHHHHHHhcCc
Q 025529 112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~-~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
....+|+|++. .......+..++.+.+.. ...+++|.+|.+++.+|+..|.
T Consensus 72 --~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 72 --AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp --TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred --cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 22357889853 333333333433211222 3356889999999999998874
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.75 E-value=2.1e-08 Score=82.70 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=66.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHH-HHH--cCCchHHHHHH---HHHcC-----CCcCHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA-AVA--AKTPLGIKAKE---AMDKG-----ELVSDDLVV 102 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~-~~~--~~~~~~~~i~~---~l~~~-----~~~~~~~~~ 102 (251)
.++|+ ||+||||||+|+.|+++++..+++.|++... ... ...+....... .+... .......+.
T Consensus 3 li~I~-----G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 77 (253)
T 2ze6_A 3 LHLIY-----GPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAH 77 (253)
T ss_dssp EEEEE-----CCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHH
T ss_pred EEEEE-----CCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHH
Confidence 45566 9999999999999999999999999875311 000 00000000000 00000 012233344
Q ss_pred HHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHh----cCCCcCEEEEEecCH-HHHHHHHhcCc
Q 025529 103 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK----QGKKVDKVLNFAIDD-AVLEERITGRW 165 (251)
Q Consensus 103 ~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~----~~~~~~~vI~L~~~~-e~~~~Rl~~r~ 165 (251)
+.....+.....+..+|+++... . .+..++.. .+.. ..+|||++|. +++.+|+..|.
T Consensus 78 ~~~~~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~-~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 78 RRLIFEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQ-WHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHHHHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCE-EEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccCc-eEEEEecchhHHHHHHHHHHHH
Confidence 44444442223345678776432 1 22233322 2222 2688999997 99999999874
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.70 E-value=8.4e-08 Score=76.43 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=30.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--CceechhHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATGDM 71 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~~l 71 (251)
+.++..+.|. ||+||||||+++.|+..++ +.+++.+..
T Consensus 3 ~~~~~~i~i~-----G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIA-----GGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEE-----ESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCCcEEEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 4466677888 9999999999999999988 877777654
No 103
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.68 E-value=7.2e-09 Score=87.22 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 73 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~li~ 73 (251)
+++.|.|. |++||||||+++.|++.++ +.++++|++.+
T Consensus 4 ~~~iIgIt-----G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVT-----GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEE-----SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 34456666 9999999999999999887 78899887653
No 104
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.67 E-value=4e-07 Score=72.05 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCC-----ch----------HHHHHH----
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKT-----PL----------GIKAKE---- 88 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~-----~~----------~~~i~~---- 88 (251)
+.+.|+|. |.|||||+|++..|.+.+| ++.+++++.+++...... .+ +..+..
T Consensus 10 ~~~II~it-----Gk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~ 84 (202)
T 3ch4_B 10 PRLVLLFS-----GKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEE 84 (202)
T ss_dssp CSEEEEEE-----ECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHH
T ss_pred CCEEEEEE-----CCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHH
Confidence 44455555 9999999999999999885 778999999985332111 10 001110
Q ss_pred HHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHH
Q 025529 89 AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 161 (251)
Q Consensus 89 ~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl 161 (251)
....+. ..+..+. +... ....+||||. +.....+.|.+.+. ..-.+|.+.+++++..+|.
T Consensus 85 ~R~~d~----~~~~~~~---~~~~-~~~~vII~dv-R~~~Ev~~fr~~~g----~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 85 KRQADP----GFFCRKI---VEGI-SQPIWLVSDT-RRVSDIQWFREAYG----AVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp HHHHCT----TTTHHHH---SBTC-CCSEEEECCC-CSHHHHHHHHHHHG----GGEEEEEEEECHHHHHHTT
T ss_pred HHhcCc----hHHHHHH---HHhc-CCCcEEEeCC-CCHHHHHHHHHhCC----CcEEEEEEECCHHHHHHHh
Confidence 000011 1111221 1122 2236888885 78888888776542 1236899999999999993
No 105
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.64 E-value=2.6e-07 Score=77.44 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=92.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID 106 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~ 106 (251)
..++.|+|. |..||||+|+++.|.+.++ +.++.+.. |-+....+ ..+.
T Consensus 84 ~~~vlIvfE-----G~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------Pt~eE~~~--------------~yl~ 134 (304)
T 3czq_A 84 GKRVMAVFE-----GRDAAGKGGAIHATTANMNPRSARVVALTK----------PTETERGQ--------------WYFQ 134 (304)
T ss_dssp CCCEEEEEE-----ESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------CCHHHHTS--------------CTTH
T ss_pred CCCeEEEEe-----CCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------cChHHHhc--------------hHHH
Confidence 568999999 9999999999999999984 43444321 11111110 0112
Q ss_pred HHHcCCC-CCCceEEeCCCC------------CHH-------HHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcC
Q 025529 107 EAMKKPS-CQKGFILDGFPR------------TEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 166 (251)
Q Consensus 107 ~~l~~~~-~~~~~Iidg~~~------------~~~-------~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~ 166 (251)
.....++ .+.-+|.|++-. ... +...|+..+...| .+++.|+|++|.++..+|+..|..
T Consensus 135 R~~~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~ 213 (304)
T 3czq_A 135 RYVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRH 213 (304)
T ss_dssp HHHTTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhc
Confidence 2333343 223355665421 122 1122222344444 688999999999999999987742
Q ss_pred CCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH--HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCCh---hH
Q 025529 167 HPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPP---QE 240 (251)
Q Consensus 167 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~--~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~---ee 240 (251)
++.. +-..++..++ .....|.+....+...-.. ...|+.||++... ..
T Consensus 214 dp~k--------------------------~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~ 267 (304)
T 3czq_A 214 DPLK--------------------------IWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRIN 267 (304)
T ss_dssp CTTT--------------------------GGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHH
T ss_pred Cccc--------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHH
Confidence 2110 0012222333 3335555555555544332 3469999998754 45
Q ss_pred HHHHHHHHhc
Q 025529 241 VTSEVQKALS 250 (251)
Q Consensus 241 v~~~i~~~l~ 250 (251)
+.+.|.+.|.
T Consensus 268 v~~~Il~~l~ 277 (304)
T 3czq_A 268 VIRHMLTKLD 277 (304)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 106
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.56 E-value=8.1e-08 Score=76.22 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhcc-CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 15 VDLMTELLRRMKCA-SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+++++++.++... +.++..+.+. |++||||||+++.|+..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~-----G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGID-----GLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 35677777777643 4567778888 999999999999999876
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.55 E-value=7.3e-07 Score=69.74 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred EEEEEecCH-HHHHHHHhcCcCCCCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHHHHHHHHHhccHHHHHHHh
Q 025529 146 KVLNFAIDD-AVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYS 224 (251)
Q Consensus 146 ~vI~L~~~~-e~~~~Rl~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~y~~~~~~~~~~~~ 224 (251)
.+|++..|. +.+.+|+..|. .++.+.+++|+......... .+.
T Consensus 116 ~~i~i~~p~~~~l~~Rl~~Rg---------------------------------~~~~~~i~~rl~~~~~~~~~---~~~ 159 (186)
T 3a00_A 116 RFLFIAPPSVEDLKKRLEGRG---------------------------------TETEESINKRLSAAQAELAY---AET 159 (186)
T ss_dssp EEEEEECSCC---------------------------------------------------------------------C
T ss_pred EEEEEECcCHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHHHHh---hcc
Confidence 567788755 88888988773 33445677777665433211 111
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHhc
Q 025529 225 KKGIVAQLHAEKPPQEVTSEVQKALS 250 (251)
Q Consensus 225 ~~~~~~~id~~~~~eev~~~i~~~l~ 250 (251)
..-.++.++. +.++..+++.++|.
T Consensus 160 ~~~d~vi~nd--~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 160 GAHDKVIVND--DLDKAYKELKDFIF 183 (186)
T ss_dssp CCCSEEEECS--SHHHHHHHHHHHHT
T ss_pred cCCcEEEECc--CHHHHHHHHHHHHH
Confidence 1123444443 89999999998875
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.46 E-value=3.8e-06 Score=68.59 Aligned_cols=35 Identities=20% Similarity=0.053 Sum_probs=26.1
Q ss_pred hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.....++..+.|. ||.||||||+++.|+..+|..
T Consensus 18 isl~i~~g~iigI~-----G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 18 LYFQSMRPFLIGVS-----GGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----CCSEEEEEE-----CSTTSSHHHHHHHHHHHHTGG
T ss_pred eeccCCCCEEEEEE-----CCCCCCHHHHHHHHHHHhchh
Confidence 33344566677788 999999999999999988865
No 109
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.41 E-value=7.9e-07 Score=81.00 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=56.9
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC------CceechhHHHHHHHHcCCchHH-HHHH
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGI-KAKE 88 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~------~~~i~~~~li~~~~~~~~~~~~-~i~~ 88 (251)
++.+.+...+.....++..++|+ |++||||||+++.|+..++ +.+++.+++... +...-.+.. ....
T Consensus 353 eV~~vLR~~~~~~~~~G~iI~Li-----G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~ 426 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFTVFFT-----GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDV 426 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEE-----ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHH
T ss_pred chhhhhhhhcccccccceEEEEE-----CCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHH
Confidence 34443333332223467889999 9999999999999999984 445777665432 111000000 0000
Q ss_pred HHHcCCCcCHHHHHHHHHHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHh
Q 025529 89 AMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 162 (251)
Q Consensus 89 ~l~~~~~~~~~~~~~ll~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~ 162 (251)
.+ ..+..+.+. +.. ....++..+............+++...+ .-.+|||++|.+++.+|..
T Consensus 427 ~~--------r~i~~v~q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g--~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 427 NV--------RRIGFVASE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG--GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HH--------HHHHHHHHH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS--EEEEEEECC----------
T ss_pred HH--------HHHHHHHHH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC--CEEEEEEcCCHHHHHHhcc
Confidence 00 001111111 111 1122333332112333334445554433 2378999999999999964
No 110
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.41 E-value=1.8e-06 Score=73.84 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHH-HHHHHHhCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQS-PIIKDEYCL 63 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a-~~La~~~~~ 63 (251)
+++.|+|. |+.||||||++ +.|++.++-
T Consensus 11 ~~~~I~iE-----G~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 11 GVLRIYLD-----GAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEE-----ESSSSCTTHHHHHHHHTTTTS
T ss_pred CceEEEEe-----CCCCCCHHHHHHHHHHHHHhh
Confidence 46778888 99999999999 999998864
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.39 E-value=5.6e-07 Score=72.79 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHH-HHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK-DEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La-~~~ 61 (251)
.++..++|+ ||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~-----Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLS-----SPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEE-----CSCC----CHHHHHHC---
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHhcCC
Confidence 456678888 999999999999999 665
No 112
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.39 E-value=2.1e-06 Score=73.21 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+++.|+|+ |+.||||||+++.|++.+.
T Consensus 3 ~~~fI~~E-----G~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYID-----GPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEEC-----SCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence 45778888 9999999999999999874
No 113
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.37 E-value=4.1e-06 Score=72.43 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+++.|+|+ |+.||||||+++.|++.+.
T Consensus 47 ~~~~fIt~E-----G~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYID-----GPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEEC-----SSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence 456678888 9999999999999999874
No 114
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.35 E-value=4.4e-06 Score=74.81 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-----ceechhHHHHHHHHcC-C------chHHHHHHHHHcCCCcC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAK-T------PLGIKAKEAMDKGELVS 97 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-----~~i~~~~li~~~~~~~-~------~~~~~i~~~l~~~~~~~ 97 (251)
..+..|+++ |.|||||||+++.|++.++. ..++.+++... .... . ..+.......
T Consensus 37 ~~~~~Ivlv-----GlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~~ifd~~g~~~~r~r------- 103 (469)
T 1bif_A 37 NCPTLIVMV-----GLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSFEFFLPDNEEGLKIR------- 103 (469)
T ss_dssp -CCEEEEEE-----CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCGGGGCTTCHHHHHHH-------
T ss_pred CCcEEEEEE-----CCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCcccccCCCCHHHHHHH-------
Confidence 356788888 99999999999999998753 45555664443 2211 1 1111000000
Q ss_pred HHHHHHHH---HHHHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEe---cCHHHHHHHHhcC
Q 025529 98 DDLVVGII---DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA---IDDAVLEERITGR 164 (251)
Q Consensus 98 ~~~~~~ll---~~~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~---~~~e~~~~Rl~~r 164 (251)
..+....+ ...+.. ..+..+|+|...........+...+...+. .+++|+ .+++.+.+|+..+
T Consensus 104 e~~~~~~l~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 104 KQCALAALNDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHh
Confidence 11111122 222211 233468899987777777777666554433 345666 4477888887754
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.16 E-value=0.00014 Score=58.32 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
++..++|+ ||+||||||+.+.|+..+.
T Consensus 15 ~G~ii~l~-----GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVS-----APSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEE-----CCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHhccCC
Confidence 56678888 9999999999999998764
No 116
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.15 E-value=1.8e-06 Score=73.34 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 71 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~l 71 (251)
.++..+.|. ||+||||||+++.|+..++ +..++.|..
T Consensus 90 ~~p~iigI~-----GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIA-----GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEE-----CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 345566677 9999999999999998875 445666653
No 117
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.05 E-value=2e-05 Score=70.67 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+.++.|+|. |..||||+|+++.|.+.++
T Consensus 40 ~~~~vlIvfE-----G~D~AGKg~~Ik~l~~~l~ 68 (500)
T 3czp_A 40 ARFPVIILIN-----GIEGAGKGETVKLLNEWMD 68 (500)
T ss_dssp CCCCEEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred CCCCEEEEEe-----CcCCCCHHHHHHHHHHhcC
Confidence 5789999999 9999999999999999984
No 118
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.02 E-value=3.2e-06 Score=68.92 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=33.4
Q ss_pred eecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHH
Q 025529 39 IVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 77 (251)
Q Consensus 39 ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~ 77 (251)
+|+|+|++||||||+++.|++.+|+++++.++.+++.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 466779999999999999999999999998877766544
No 119
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.01 E-value=1.6e-05 Score=67.18 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-------CceechhH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-------LCHLATGD 70 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-------~~~i~~~~ 70 (251)
.++..+.|. |++||||||+++.|+..++ +.++++|.
T Consensus 78 ~~g~iigI~-----G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIA-----GSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEE-----ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEE-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 456677777 9999999999999999876 55666664
No 120
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.95 E-value=3.6e-05 Score=69.04 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 105 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll 105 (251)
...++.|+|. |..||||+|+++.|.+.++ +.++.... |..... +. ..+
T Consensus 297 ~~~~vlIvfE-----G~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~------~~--------~yl 347 (500)
T 3czp_A 297 RQHSLVAVFE-----GNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER------AQ--------PYL 347 (500)
T ss_dssp GGCEEEEEEE-----ESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH------TS--------CTT
T ss_pred CCCCEEEEEe-----ccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh------cc--------hHH
Confidence 4578999999 9999999999999999883 44443321 111111 00 111
Q ss_pred HHHHcCCCCC-CceEEeCCCC------------CHHHH-------HHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 106 DEAMKKPSCQ-KGFILDGFPR------------TEVQA-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 106 ~~~l~~~~~~-~~~Iidg~~~------------~~~~~-------~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.......+.. .-.|+|++-. +..++ ..|+..+...| .+.+.|+|++|.++..+|+..|.
T Consensus 348 ~R~~~~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g-~~i~Kf~L~is~eeQ~~R~~~R~ 426 (500)
T 3czp_A 348 WRFWRHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYG-IIVVKFWLAIDKQTQMERFKERE 426 (500)
T ss_dssp HHHHTTCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEEECCHHHHHHHHHHHh
Confidence 2233344332 2355665321 22222 22333344444 46799999999999999999886
Q ss_pred CC
Q 025529 166 IH 167 (251)
Q Consensus 166 ~~ 167 (251)
.+
T Consensus 427 ~~ 428 (500)
T 3czp_A 427 KT 428 (500)
T ss_dssp HS
T ss_pred cC
Confidence 43
No 121
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.95 E-value=0.00022 Score=54.72 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=60.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHHHHHHHHcCC--ch-HHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT--PL-GIKAKEAMDKGELVSDDLVVGIIDE 107 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~li~~~~~~~~--~~-~~~i~~~l~~~~~~~~~~~~~ll~~ 107 (251)
++..++++ |++||||||+++.+.. +...++.+. ++..+.+.. .. ..... +........
T Consensus 8 ~gei~~l~-----G~nGsGKSTl~~~~~~--~~~~~~~d~-~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 68 (171)
T 4gp7_A 8 ELSLVVLI-----GSSGSGKSTFAKKHFK--PTEVISSDF-CRGLMSDDENDQTVTGAAF-----------DVLHYIVSK 68 (171)
T ss_dssp SSEEEEEE-----CCTTSCHHHHHHHHSC--GGGEEEHHH-HHHHHCSSTTCGGGHHHHH-----------HHHHHHHHH
T ss_pred CCEEEEEE-----CCCCCCHHHHHHHHcc--CCeEEccHH-HHHHhcCcccchhhHHHHH-----------HHHHHHHHH
Confidence 56677888 9999999999998642 455555544 333333221 10 00000 011111112
Q ss_pred HHcCCCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 108 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 108 ~l~~~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
.+. .....++|..............+.......| .+++||-|...+-.|...|.
T Consensus 69 ~~~---~g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 69 RLQ---LGKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HHH---TTCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred HHh---CCCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence 221 1234566765544433333333334444566 46679999999999988773
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.91 E-value=7.9e-06 Score=63.66 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc--eechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID 106 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~--~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~ 106 (251)
..++..++++ |++||||||+++.|+..++.. +++.+++... .......+...... .+...+.+.+.
T Consensus 6 i~~g~~i~l~-----G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~~~~~~~------~~~~~v~~~l~ 73 (191)
T 1zp6_A 6 DLGGNILLLS-----GHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDPWLPQSH------QQNRMIMQIAA 73 (191)
T ss_dssp CCTTEEEEEE-----ECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCTTSSSHH------HHHHHHHHHHH
T ss_pred CCCCeEEEEE-----CCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccCCccchh------hhhHHHHHHHH
Confidence 3467788888 999999999999999987544 6777765432 11111000000000 00111111111
Q ss_pred HHHcC-CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCc
Q 025529 107 EAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 165 (251)
Q Consensus 107 ~~l~~-~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~ 165 (251)
..... ......+++|+..... ....+. ..+.. ...+++.++.++++.|+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~~~~~-~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 74 DVAGRYAKEGYFVILDGVVRPD-WLPAFT----ALARP-LHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHHHHHHTSCEEEECSCCCTT-TTHHHH----TTCSC-EEEEEEECCHHHHHHHHHTTC
T ss_pred HHHHHHhccCCeEEEeccCcHH-HHHHHH----hcCCC-eEEEEecCCHHHHHHHHHhcC
Confidence 11000 0112346778754422 111111 11122 357899999999999998773
No 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.90 E-value=3.9e-06 Score=71.75 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=29.2
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
.|+|. ||+||||||+|..|++.++..+|++|++
T Consensus 9 lI~I~-----GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIV-----GPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEE-----CSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred eEEEE-----CCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 56666 9999999999999999999888888765
No 124
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.86 E-value=6.7e-06 Score=69.79 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
+.|+|+ ||+||||||++..|+++++..++++|.+
T Consensus 6 ~~i~i~-----GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLM-----GPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEE-----CCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEE-----CCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 467788 9999999999999999999999998764
No 125
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.80 E-value=9.5e-06 Score=69.18 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
++++.|+|+ ||+||||||++..|+++++..+||+|.+
T Consensus 38 ~~~~lIvI~-----GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLM-----GATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEE-----CSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEE-----CCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345678888 9999999999999999999999998865
No 126
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.80 E-value=2e-05 Score=62.56 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC-----CceechhH
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC-----LCHLATGD 70 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~-----~~~i~~~~ 70 (251)
++.++++..+.....++..+.|. ||+||||||+++.|+..+. ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~-----G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALS-----GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEE-----CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEE-----CCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 46666666665445577888888 9999999999999999874 45555543
No 127
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.73 E-value=1.2e-05 Score=68.94 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhhc--cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529 15 VDLMTELLRRMKC--ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65 (251)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~ 65 (251)
..+.+.+...+.. .+...+.|+|+ |+|||||||+++.|++.+++++
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~-----G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILV-----GSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEE-----CCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEE-----CCCCCcHHHHHHHHHHHhCCCe
Confidence 3455556555532 23345678999 9999999999999999998877
No 128
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.70 E-value=2.6e-05 Score=70.23 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=37.3
Q ss_pred hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC-------ceechhH
Q 025529 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL-------CHLATGD 70 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~-------~~i~~~~ 70 (251)
.++.+.+...|......++.|+|+ |.+||||||+++.|+++++. .+++.|.
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~-----GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLG-----NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEC-----TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hhhHHHHHHhcccccccceEEEec-----ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 345555555553233456778888 99999999999999999986 5666654
No 129
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.66 E-value=3e-05 Score=65.25 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
..+..|+|. ||+||||||++..|+++++..+++.|.
T Consensus 8 ~~~~~i~i~-----GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLM-----GPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEE-----CCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEE-----CCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 345677888 999999999999999999988888764
No 130
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.65 E-value=0.00057 Score=56.58 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=90.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC---CceechhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE 107 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~---~~~i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~ 107 (251)
.+..|+|. |..||||+++.+.|.+.++ +.+++... |.. .+.....+..
T Consensus 74 ~~vlIvfE-----G~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------Pt~--------------eE~~~~ylwR 124 (289)
T 3rhf_A 74 KRLLLILQ-----AMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------PTD--------------EEKSHDFLWR 124 (289)
T ss_dssp CEEEEEEE-----ECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------CCH--------------HHHTSCTTHH
T ss_pred CcEEEEEE-----CCCCCChHHHHHHHHHhcCcCceEEEECCC----------CCh--------------hhhcCCHHHH
Confidence 68889999 9999999999999999984 33333311 000 0000111112
Q ss_pred HHcCCCCC-CceEEeCC------------CCC-------HHHHHHHHHHHHhcCCCcCEEEEEecCHHHHHHHHhcCcCC
Q 025529 108 AMKKPSCQ-KGFILDGF------------PRT-------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 167 (251)
Q Consensus 108 ~l~~~~~~-~~~Iidg~------------~~~-------~~~~~~l~~~~~~~~~~~~~vI~L~~~~e~~~~Rl~~r~~~ 167 (251)
....++.. .-.|+|+. ..+ ..+...|+..+...|. ..+-++|++|.++..+|+..|..+
T Consensus 125 ~~~~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~-~ilKf~LhIskeEQ~kR~~~R~~d 203 (289)
T 3rhf_A 125 IEKQVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGT-TIVKVMLNISKDEQKKRLIARLDD 203 (289)
T ss_dssp HHTTCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTE-EEEEEEEECCHHHHHHHHHHHHHC
T ss_pred HHHhCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCC-EEEEEEEECCHHHHHHHHHHHhcC
Confidence 22233322 23445542 111 2223345555555554 346789999999999999988532
Q ss_pred CCCCceecccCCCCCCCCCCCCCCCCcccCCCCcHHHHH--HHHHHHHhccHHHHHHHhh-CCcEEEEcCCCChhH---H
Q 025529 168 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLK--SRLEAFHKQTEPVIDYYSK-KGIVAQLHAEKPPQE---V 241 (251)
Q Consensus 168 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~~~~~~~~~--~r~~~y~~~~~~~~~~~~~-~~~~~~id~~~~~ee---v 241 (251)
+. ++=..++..++ ++...|......++..-+. ...|++|+++..--. +
T Consensus 204 P~--------------------------k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v 257 (289)
T 3rhf_A 204 PS--------------------------KHWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAV 257 (289)
T ss_dssp GG--------------------------GGGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHH
T ss_pred Cc--------------------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHH
Confidence 21 11122333333 3446666666665555432 246999999754333 4
Q ss_pred HHHHHHHhc
Q 025529 242 TSEVQKALS 250 (251)
Q Consensus 242 ~~~i~~~l~ 250 (251)
.+.|.+.|+
T Consensus 258 ~~~ll~~Le 266 (289)
T 3rhf_A 258 QQLLLDALG 266 (289)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555553
No 131
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.61 E-value=2.6e-05 Score=65.78 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=29.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGDM 71 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~l 71 (251)
++.|+|. ||+||||||++..|+++++..+|++|.+
T Consensus 3 ~~~i~i~-----GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIV-----GPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEE-----CCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEE-----CCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3456777 9999999999999999999888887754
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.60 E-value=3.9e-05 Score=64.35 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
+.|..+++. ||||+|||++|+.+++.++.+++.++
T Consensus 34 ~~p~~lLl~-----GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 34 KVPLILGIW-----GGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCSEEEEE-----ECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 456677888 99999999999999999987766553
No 133
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=5.8e-05 Score=65.87 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||.+|+.+|..++.+++.+
T Consensus 180 ~~prGvLL~-----GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 180 AQPKGVILY-----GPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCCEEEE-----SCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEe-----CCCCCCHHHHHHHHHHhhCCCceEE
Confidence 355669999 9999999999999999999888765
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=5.1e-05 Score=66.99 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||.+|+.+|..++.+++.+
T Consensus 213 ~~prGvLLy-----GPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 213 RAPKGALMY-----GPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeeEEE-----CcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456679999 9999999999999999999887765
No 135
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=5.8e-05 Score=66.53 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=29.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||++|+.+|..++.+++.+
T Consensus 204 ~~prGiLL~-----GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 204 DPPRGVLLY-----GPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCEEEEE-----SCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 455668999 9999999999999999999887765
No 136
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=5.9e-05 Score=66.62 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=30.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||++|+.+|..++.+++.+
T Consensus 213 ~~prGvLL~-----GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 213 KPPKGVLLY-----GPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456679999 9999999999999999999887765
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.51 E-value=9.8e-05 Score=56.95 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh----C--CceechhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----~--~~~i~~~~li~~ 74 (251)
++..+++. ||+|+||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~-----G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFV-----GSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEEC-----CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 45678888 999999999999998876 4 345666665443
No 138
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.49 E-value=0.00012 Score=63.08 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+..++|. ||||+|||++|+.|++.++.+++.++
T Consensus 50 ~~~~vll~-----GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLI-----GPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 45678999 99999999999999999998877654
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=7.9e-05 Score=57.67 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
|.++..++|+ ||+||||||+++.|...+.
T Consensus 2 ~~~g~~i~i~-----GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLL-----GAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEE-----CCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEE-----CCCCCCHHHHHHHHHhhCC
Confidence 3456678888 9999999999999998763
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.44 E-value=0.00011 Score=60.86 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
-++++ |||||||||+++.|+..++..++.+
T Consensus 46 GvlL~-----Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 46 GVLLA-----GPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEEE-----SSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEE-----CCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 38888 9999999999999999987655543
No 141
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=9e-05 Score=65.65 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=30.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||++|+.+|.+++.+++.+
T Consensus 241 ~pprGILLy-----GPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 241 DPPKGILLY-----GPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCCSEEEEC-----SCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEee-----CCCCCcHHHHHHHHHhccCCCeEEE
Confidence 456678899 9999999999999999999887765
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.39 E-value=0.00023 Score=59.58 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=25.5
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+.++..|.|. |++||||||+++.|+..++
T Consensus 27 ~~~~~~ii~I~-----G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFS-----GPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEE-----CCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhh
Confidence 34567778888 9999999999999999884
No 143
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.00013 Score=59.60 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=27.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+..++|. ||||+||||+++.++..++.+++.+
T Consensus 45 ~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMV-----GPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEE-----CCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEE-----CcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4568888 9999999999999999998766554
No 144
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.38 E-value=0.00019 Score=53.40 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++++..........+..++|. |+||+|||++|+.++...
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~-----G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLY-----GAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEE-----SSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEE-----CCCCCCHHHHHHHHHHhC
Confidence 44555555554333444568899 999999999999999875
No 145
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00011 Score=64.38 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=30.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+|.-+++. ||||+|||.+|+.+|..++.+++.+
T Consensus 214 ~~prGvLLy-----GPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 214 KPPKGVILY-----GAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCSEEEEE-----SSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceE-----CCCCchHHHHHHHHHHHhCCCEEEE
Confidence 456679999 9999999999999999999887765
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=59.43 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=28.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..+..++|. ||||+|||++++.+++.++.+++.+
T Consensus 37 ~~~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 37 KVPKGALLL-----GPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCCEEEEE-----SCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345568888 9999999999999999998776654
No 147
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.37 E-value=9.1e-05 Score=64.58 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
+.|+|. ||+||||||++..|++.++..+|++|.
T Consensus 3 ~~i~i~-----GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIA-----GTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEE-----ECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEE-----CcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 456666 999999999999999999988888765
No 148
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.36 E-value=7.7e-05 Score=61.29 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=26.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+..++|. ||||+|||++++.+++.++.+++.+
T Consensus 44 ~~~vll~-----G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLV-----GPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCB-----CSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3447777 9999999999999999998776654
No 149
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.33 E-value=0.00012 Score=64.67 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
++..++++ ||||+||||+++.|++.++.+++.++
T Consensus 49 ~~~~iLl~-----GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEE-----cCCCCCHHHHHHHHHHHcCCCceeec
Confidence 45679999 99999999999999999998887665
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.32 E-value=0.00025 Score=58.67 Aligned_cols=34 Identities=29% Similarity=0.565 Sum_probs=29.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..+..++|. ||||+|||++++.+++.++.+++.+
T Consensus 49 ~~~~~~ll~-----G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLY-----GPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEE-----SSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456678999 9999999999999999998776654
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.30 E-value=0.00016 Score=60.78 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=31.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech--hHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRA 74 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~--~~li~~ 74 (251)
.++..++|. ||||+||||+++.++..++.+++.+ .++...
T Consensus 47 ~~~~~vLL~-----Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 47 TPSKGVLFY-----GPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCSEEEEE-----CSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCceEEEE-----CCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 456678899 9999999999999999998776654 355443
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.29 E-value=0.00032 Score=59.39 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=29.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
++..++|. ||||+|||++++.+++.++.+++.+.
T Consensus 50 ~~~~vLl~-----GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 50 PTSGILLY-----GPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCCEEEEE-----CSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCeEEEE-----CCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 45678999 99999999999999999987766553
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.29 E-value=0.00017 Score=60.16 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=28.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++..++|. ||||+||||+++.+++.++.+++.+
T Consensus 53 ~~~~vll~-----Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLF-----GPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEE-----SSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEE-----CcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45678899 9999999999999999998766544
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.0004 Score=53.17 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++.++++...+.. ..+..++|. |++|+||||+++.+++.+
T Consensus 28 ~~~~~~l~~~l~~--~~~~~~ll~-----G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 28 DEEIRRTIQVLQR--RTKNNPVLI-----GEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHHHHTS--SSSCEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc--CCCCceEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3445555555443 345568888 999999999999999986
No 155
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.25 E-value=0.00034 Score=62.24 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~~ 69 (251)
.++..++|. ||||+|||++|+.+++.++ ++++.++
T Consensus 61 ~~~~~iLl~-----GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 61 MAGRAVLLA-----GPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCeEEEE-----CCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 355679999 9999999999999999998 6666543
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.24 E-value=0.00018 Score=55.70 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=22.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
|+++|+ ||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~-----G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIIT-----GEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEE-----CCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHHHhCCc
Confidence 356677 999999999999999988643
No 157
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00026 Score=59.05 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+..++|. ||||+|||++++.+++.++.+++.+
T Consensus 49 ~~~~vll~-----G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMI-----GPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCCEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45678899 9999999999999999998766543
No 158
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.21 E-value=0.00047 Score=59.79 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=29.1
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
.-.++..+++. ||+||||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~-----G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFK-----GPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEE-----CSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEE-----CCCCCCHHHHHHHHHhhcCCcEEE
Confidence 44567788999 999999999999999988765554
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.20 E-value=0.00024 Score=58.49 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
...+..++|. ||||+|||++|+.+++..+.+++.+
T Consensus 61 ~~~~~~vLl~-----G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLE-----GPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEE-----CSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456678888 9999999999999999998876654
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.20 E-value=0.00037 Score=59.97 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=29.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..+..++|. ||||+|||++++.+++.++.+++.+
T Consensus 115 ~~~~~vLl~-----GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 115 GPPKGILLF-----GPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp SCCSEEEEE-----SSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEE-----CCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 356678899 9999999999999999998776644
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.19 E-value=0.00029 Score=55.53 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+-++..++|. ||+||||||+++.|.+.+.
T Consensus 16 ~~~g~~ivl~-----GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLI-----GASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEE-----CCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEE-----CcCCCCHHHHHHHHHhhCC
Confidence 3466678888 9999999999999998875
No 162
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00039 Score=53.15 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 17 LMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++.+...+.. ..+..++|. |++|+||||+++.+++.+
T Consensus 30 ~~~~l~~~l~~--~~~~~vll~-----G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 30 EIRRAIQILSR--RTKNNPILL-----GDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHHHTS--SSSCEEEEE-----SCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCceEEE-----CCCCCCHHHHHHHHHHHH
Confidence 44444444432 345567888 999999999999999987
No 163
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.18 E-value=0.00023 Score=56.06 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=28.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
.+..++|. ||+||||||++..|+++.+ .+++.|.
T Consensus 33 ~g~~ilI~-----GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLIT-----GDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEE-----CCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEE-----CCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 45668888 9999999999999999866 7777764
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.15 E-value=0.00039 Score=56.62 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..++|+ ||||+||||+++.++..++..++.+
T Consensus 50 ~g~ll~-----G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 50 KGVLLV-----GPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp SEEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 348888 9999999999999999887655544
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.14 E-value=0.00047 Score=58.47 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhc---cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 16 DLMTELLRRMKC---ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
++++.+...+.. ....+..++|. |+||+|||++++.+++.++.+++.+.
T Consensus 36 ~~~~~l~~~l~~~~~~~~~~~~vll~-----G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 36 SIKKNLNVFIAAAKKRNECLDHILFS-----GPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCEEEE-----CSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEE-----CcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 444444444432 13445568888 99999999999999999987766553
No 166
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.14 E-value=0.00028 Score=60.98 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+..++|. ||||+|||++|+.|++.++.+++.++
T Consensus 71 ~~~~ill~-----Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLI-----GPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 45568999 99999999999999999987776553
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00049 Score=51.63 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=23.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|+ |++||||||+++.++..+
T Consensus 35 ~g~~~~l~-----G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVW-----GEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEE-----SSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 56678888 999999999999999877
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00032 Score=59.54 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=26.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCceec
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHLA 67 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i~ 67 (251)
++..++|. ||||+|||++++.++..+ +.+++.
T Consensus 44 ~~~~iLL~-----GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLF-----GPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEE-----SSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEE-----CCCCccHHHHHHHHHHHcCCCcEEE
Confidence 45678899 999999999999999998 655544
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.10 E-value=0.00047 Score=57.67 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+..++|. ||||+|||++++.+++.+
T Consensus 64 ~~~~~~vll~-----G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFT-----GNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3455679999 999999999999999988
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.0003 Score=55.30 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|+ ||+||||||+.+.|...+
T Consensus 3 ~g~~i~lv-----GpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLS-----GPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence 34567888 999999999999998865
No 171
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.08 E-value=0.00033 Score=60.30 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=29.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
++..++|. ||||+|||++|+.+++.++.+++.++
T Consensus 83 ~~~~iLL~-----GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 83 PTSGILLY-----GPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCCEEEE-----CSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEE-----CCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 34568899 99999999999999999998776553
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.05 E-value=0.00013 Score=54.23 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 15 VDLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+..++++..........+..++|. |+||+|||++|+.++...+ +++.+
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~-----G~~GtGKt~lA~~i~~~~~-~~~~~ 57 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLT-----GEAGSPFETVARYFHKNGT-PWVSP 57 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEE-----EETTCCHHHHHGGGCCTTS-CEECC
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEE-----CCCCccHHHHHHHHHHhCC-CeEEe
Confidence 344554554443322334458889 9999999999999988776 44433
No 173
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.02 E-value=0.00077 Score=57.37 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=25.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCce
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH 65 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~ 65 (251)
.+..++|+ ||||+||||+++.++..++..+
T Consensus 50 ~~~~~ll~-----Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLA-----GPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEE-----SSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEE-----CCCCCcHHHHHHHHHHHhCCCE
Confidence 34568888 9999999999999999987643
No 174
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.01 E-value=0.0012 Score=55.81 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred HHHHhhccCC-CCeEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHHH
Q 025529 21 LLRRMKCASK-PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDML 72 (251)
Q Consensus 21 ~~~~~~~~~~-~~~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~li 72 (251)
.+..+...+. .+..++|. ||||+||||+++.++..+ +.. +++..++.
T Consensus 25 ~~~~~~~~~~~~~~~lll~-----G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIY-----GSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEE-----CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred HHHHHHhCcCCCCCeEEEE-----CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 3444443443 45568899 999999999999999987 544 45555543
No 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.00 E-value=0.0019 Score=50.48 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=27.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh---CCc--eechhHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY---CLC--HLATGDMLR 73 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~---~~~--~i~~~~li~ 73 (251)
..++|. |++|+||||+++.++..+ +.. +++..+++.
T Consensus 55 ~~~~l~-----G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLH-----GSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 678889 999999999999999877 333 356655543
No 176
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.98 E-value=0.00073 Score=53.44 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=24.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
...++|. ||||+||||+|..|++.++-..+
T Consensus 58 kn~ili~-----GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFC-----GPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEE-----SCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEE-----CCCCCCHHHHHHHHHHHhCCCee
Confidence 3468999 99999999999999998754443
No 177
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.00074 Score=55.81 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=25.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.++|+ ||+||||||+++.|+..++..++.+
T Consensus 75 gvll~-----Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 75 GVLLV-----GPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEEE-----CCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEE-----CCCcChHHHHHHHHHHHcCCCEEEe
Confidence 48888 9999999999999999887655544
No 178
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.97 E-value=0.00023 Score=55.23 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred ecccCCCCCChhHHHHHHHHHhCCc
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.|+|++||||||+|..|+.. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 445599999999999999987 654
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.95 E-value=0.00096 Score=57.97 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=29.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.+..++|. ||||+|||++++.++..++.+++.+
T Consensus 147 ~~~~vLL~-----GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLF-----GPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEE-----SSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 45678999 9999999999999999998877655
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.91 E-value=0.00047 Score=65.32 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=30.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+|.-+++. ||||+|||++++.+|..+|.+++.++
T Consensus 236 ~~p~GILL~-----GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 236 KPPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCEEEEE-----CCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCeEEEE-----CCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 456779999 99999999999999999998877664
No 181
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.90 E-value=0.00044 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.064 Sum_probs=20.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.+.|. |++||||||++..|...+
T Consensus 5 ~~i~i~-----G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVV-----GYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred EEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence 346666 999999999999998876
No 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.88 E-value=0.0007 Score=60.50 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
.|..++|. ||||+||||+++.++...+.+++.+
T Consensus 48 ~p~gvLL~-----GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 48 MPKGILLV-----GPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCSEEEEE-----CCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 34558889 9999999999999999999877655
No 183
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.88 E-value=0.0011 Score=55.89 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++..+.|. |++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~-----G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVA-----GSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEE-----CCCCchHHHHHHHHHhhc
Confidence 4567778888 999999999999999876
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.86 E-value=0.0018 Score=51.49 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..++|. ||||+||||+++.+++.++
T Consensus 51 ~~~~~ll~-----G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLW-----GPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEE-----CSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEE-----CCCCCCHHHHHHHHHHHHH
Confidence 55678899 9999999999999998763
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.84 E-value=0.00068 Score=54.12 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=23.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++|+ ||+||||||+.+.|+..+
T Consensus 21 ~~G~~~~lv-----GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVIC-----GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEE-----CSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence 456678889 999999999999999876
No 186
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.82 E-value=0.0017 Score=50.84 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.++.+...+.. + ++..++|. |++|+|||++++.+++.+
T Consensus 24 ~~~~~l~~~l~~-~-~~~~~ll~-----G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 24 EVIQRLKGYVER-K-NIPHLLFS-----GPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHHT-T-CCCCEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-C-CCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 444444444432 2 22348888 999999999999999876
No 187
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.80 E-value=0.012 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=19.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..|+|+ || ||+|+.+.|.+.+.
T Consensus 104 ~~r~ivl~-----GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 104 YARPIIIL-----GP---TKDRANDDLLSEFP 127 (295)
T ss_dssp SCCCEEEE-----ST---THHHHHHHHHHHCT
T ss_pred CCCEEEEE-----CC---CHHHHHHHHHhhCc
Confidence 44557888 98 79999999998763
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.79 E-value=0.00083 Score=59.54 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=27.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-CCcee--chhHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-CLCHL--ATGDMLRA 74 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-~~~~i--~~~~li~~ 74 (251)
++..++|. ||||+|||++++.++..+ +.+++ +..+++..
T Consensus 166 ~~~~vLL~-----GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLF-----GPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEE-----CSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEE-----CCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45678999 999999999999999998 66554 44455443
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.77 E-value=0.0016 Score=54.78 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
++.+.+...+. ....+..+++. ||||+|||++++.+++.++..++..+
T Consensus 33 ~~~~~l~~~l~-~~~~~~~~L~~-----G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 33 FDKETFKSITS-KGKIPHIILHS-----PSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHHH-TTCCCSEEEEC-----SSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHH-cCCCCeEEEee-----CcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 44444444333 33344455666 77999999999999999987766553
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.77 E-value=0.0014 Score=51.98 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
...+.+...+. .+..+..++|. |++|+||||+++.+++.++
T Consensus 30 ~~~~~l~~~l~-~~~~~~~~ll~-----G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 30 HVLTALANGLS-LGRIHHAYLFS-----GTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHH-HTCCCSEEEEE-----CSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhc
Confidence 34444444433 23334568888 9999999999999999874
No 191
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.77 E-value=0.0019 Score=48.90 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=25.4
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.-.++..+.++ ||.||||||+.+.|+..+
T Consensus 29 ~i~~Ge~v~L~-----G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLN-----GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEE-----CSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEE-----CCCCCCHHHHHHHHHHhC
Confidence 34677789999 999999999999999876
No 192
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.76 E-value=0.00098 Score=52.57 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++..++|+ ||+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~-----GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLS-----GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEE-----CSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHhhCC
Confidence 456788889 9999999999999998763
No 193
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.00095 Score=60.32 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=28.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+..++|. ||||+||||+++.+++.+++.++.+
T Consensus 77 ~~~lLL~-----GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLY-----GPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEE-----CSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEE-----CCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4578888 9999999999999999999877655
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.73 E-value=0.0018 Score=55.44 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++..++|. ||||+|||++++.+++.++.
T Consensus 69 ~~~~vLl~-----GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIA-----GQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEE-----ESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHHhcc
Confidence 34678999 99999999999999999863
No 195
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0012 Score=56.58 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhcc--CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCA--SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+.+....... ...+..++|. ||||+||||+++.+++.+
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~-----G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLY-----GLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEEC-----BCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3444444444322 3456678888 999999999999999887
No 196
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.73 E-value=0.00073 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.++|. |++||||||+++.|...+
T Consensus 7 ~~i~i~-----G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFA-----AWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred eEEEEE-----eCCCCCHHHHHHHHHHhc
Confidence 356666 999999999999998765
No 197
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.73 E-value=0.0015 Score=53.50 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
..++.+..........+..++|. |+||+|||++++.+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~-----G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLII-----GERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEE-----CCTTSCHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEE-----CCCCCcHHHHHHHHHHhcC
Confidence 34444444443222234568888 9999999999999998764
No 198
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00049 Score=58.27 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=25.3
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++..+.|. ||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~-----GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYIT-----NADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEE-----CCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 4577789999 999999999999999988
No 199
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.71 E-value=0.0017 Score=54.53 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+++.+...-.++..++|+ ||+||||||+++.|+..+
T Consensus 115 vL~~vsl~i~~Ge~vaIv-----GpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFI-----GPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEE-----CCCCCcHHHHHHHHhhhc
Confidence 444444455677889999 999999999999999877
No 200
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.71 E-value=0.0017 Score=58.30 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=29.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..+..++|. ||||+|||++++.++..++.+++.+.
T Consensus 236 ~~~~~vLL~-----GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCEEEEE-----CSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcEEEE-----CcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 345668889 99999999999999999987776554
No 201
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.67 E-value=0.0015 Score=54.79 Aligned_cols=32 Identities=38% Similarity=0.603 Sum_probs=27.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceec
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLA 67 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~ 67 (251)
.+..++|. |+||+|||++++.+++.++.+++.
T Consensus 37 ~~~~vll~-----G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 37 PLEHLLLF-----GPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCCCEEE-----CCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CCCcEEEE-----CCCCCCHHHHHHHHHHHhCCCEEE
Confidence 44568888 999999999999999999876543
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.63 E-value=0.0035 Score=55.47 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+..+...+..+..++|. ||||+||||+++.++..+
T Consensus 118 ~~~~~~a~~~~~~~~lll~-----Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIY-----GGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3444443333335678889 999999999999999877
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.59 E-value=0.0029 Score=56.45 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.....++|+ ||||+|||++++.|+..+
T Consensus 199 ~~~~~~LL~-----G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLI-----GEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEE-----SCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEE-----CCCCCCHHHHHHHHHHHH
Confidence 344567899 999999999999999997
No 204
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0019 Score=55.19 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh------CCceechh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY------CLCHLATG 69 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~------~~~~i~~~ 69 (251)
...+..++|. |++|+||||+++.+++.+ +..++..+
T Consensus 42 ~~~~~~vli~-----G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 42 EEKPNNIFIY-----GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp TCCCCCEEEE-----ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCCeEEEE-----CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3456678888 999999999999999987 65555443
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.54 E-value=0.0017 Score=57.53 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=27.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..++|. ||||+||||+++.+++.++..++.+
T Consensus 51 ~~vLL~-----GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILW-----GPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEE-----CSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEE-----CCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 578899 9999999999999999998776654
No 206
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.53 E-value=0.00096 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.+.++ ||.||||||+.+.|+--+
T Consensus 25 e~~~li-----G~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLL-----GPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred EEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 567777 999999999999998654
No 207
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.53 E-value=0.00086 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++-.+.++ ||.||||||+.+.|+-.
T Consensus 21 ~Ge~~~li-----G~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGL-----GPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEE-----CCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 45578888 99999999999999753
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.53 E-value=0.0041 Score=52.31 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=28.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC----Cc--eechhHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC----LC--HLATGDMLRA 74 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~----~~--~i~~~~li~~ 74 (251)
+..++|. ||||+|||+++..++..+. .. +++..+++..
T Consensus 152 ~~~lll~-----G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLY-----GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEE-----CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEE-----CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 5678899 9999999999999987553 33 3566665543
No 209
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0029 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+..++|. ||||+||||+++.+++.+
T Consensus 43 ~~~~~vll~-----G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFL-----GLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 445678888 999999999999999986
No 210
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.51 E-value=0.0033 Score=53.44 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+|..+.++ ||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lv-----G~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFV-----GFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 457788889 999999999999999876
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.51 E-value=0.002 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++|. ||||+||||+++.|++.+
T Consensus 48 ~~~ll~-----G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFL-----GPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEE-----SCSSSSHHHHHHHHHHHH
T ss_pred eEEEEE-----CCCCcCHHHHHHHHHHHH
Confidence 468888 999999999999999987
No 212
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0028 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.683 Sum_probs=21.4
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++|. ||||+||||+++.+++.++
T Consensus 60 ~~ll~-----G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFY-----GPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEE-----CSTTSSHHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHhC
Confidence 38888 9999999999999998863
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0034 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=20.8
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++|. ||||+||||+++.+++.+
T Consensus 49 ~ll~-----Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFY-----GPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred EEEE-----CCCCCCHHHHHHHHHHHH
Confidence 8889 999999999999999986
No 214
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0005 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.|. |++||||||+++.|...|
T Consensus 4 ~v~Iv-----G~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIV-----GTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEE-----ESCHHHHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 45566 999999999999998876
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.47 E-value=0.0019 Score=58.72 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++..++|. ||||+||||+++.++..++.+++.+
T Consensus 107 ~g~~vll~-----Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLA-----GPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEE-----SSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 56778899 9999999999999999997655433
No 216
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.45 E-value=0.002 Score=57.89 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=26.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
+.-++|+ ||||+||||+++.++...+.+++.+
T Consensus 64 p~GvLL~-----GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 64 PKGVLLV-----GPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp CSEEEEE-----CSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4458888 9999999999999999987766554
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.45 E-value=0.0018 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
.++-.++++ ||+||||||+++.|+
T Consensus 28 ~~G~~~~l~-----GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLT-----GGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEE-----CCTTSSHHHHHHHHH
T ss_pred CCCcEEEEE-----eCCCCCHHHHHHHHH
Confidence 356678888 999999999999988
No 218
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.45 E-value=0.0021 Score=54.33 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCcee
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHL 66 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i 66 (251)
..++|. ||||+|||++++.+++.++.+++
T Consensus 47 ~~vll~-----G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLE-----GVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEE-----SCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEE-----CCCCCcHHHHHHHHHHHhCCCeE
Confidence 358889 99999999999999999876654
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.41 E-value=0.0014 Score=62.11 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=30.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.++..+++. ||||+|||.+|+.+|...+.++++++
T Consensus 509 ~~~~gvLl~-----GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 509 TPSKGVLFY-----GPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCSCCEEE-----SSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCCceEEEe-----cCCCCCchHHHHHHHHHhCCceEEec
Confidence 345668999 99999999999999999998887663
No 220
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0024 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.5
Q ss_pred EEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 35 LILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 35 i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++|. ||+|+||||+++.|+..+
T Consensus 39 ~ll~-----Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLY-----GPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEE-----CSTTSSHHHHHHTHHHHH
T ss_pred EEEE-----CCCCCCHHHHHHHHHHHH
Confidence 8889 999999999999999965
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.39 E-value=0.0022 Score=61.12 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=29.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.++..++|. |||||||||+++.|+..++.+++.++
T Consensus 236 ~~~~~vLL~-----Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 236 KPPRGILLY-----GPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCEEEEC-----SCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCeEEEE-----CcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456678999 99999999999999999987766554
No 222
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0023 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.|+ |++||||||+.+.|+..+
T Consensus 3 ~i~i~-----G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLT-----GPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEE-----SCCSSCHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCChHHHHHHHHHhhc
Confidence 45566 999999999999999876
No 223
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.35 E-value=0.0016 Score=56.04 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++-.+++. ||+||||||+.+.|...+
T Consensus 122 ~~g~i~I~-----GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVT-----GPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHhcc
Confidence 33478888 999999999999997765
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.34 E-value=0.0029 Score=51.97 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+++. ||.||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~-----Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVT-----GPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEE-----CSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEE-----CCCCccHHHHHHHHHHhC
Confidence 466688888 999999999999998765
No 225
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0021 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||+||||||+++.|+-.+
T Consensus 23 ~~G~~~~l~-----G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVF-----GEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 366788888 999999999999998744
No 226
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.32 E-value=0.0053 Score=52.33 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.7
Q ss_pred HHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 20 ELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 20 ~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.....++..+.|+ |+|||||||+.+.|...+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~-----G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGIT-----GVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEE-----CCCCCCHHHHHHHHHHhh
Confidence 3444554445678889999 999999999999998654
No 227
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.31 E-value=0.006 Score=52.31 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+.+.|++. |+||+||||++..|+..+
T Consensus 76 ~~~~~~I~i~-----G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGIT-----GVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 4466788888 999999999999998876
No 228
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.31 E-value=0.0052 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. ||+|+||||+++.++..+
T Consensus 46 ~~li~-----G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLL-----GRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 78889 999999999999999988
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.30 E-value=0.0049 Score=58.23 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh----------CCceechh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY----------CLCHLATG 69 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~----------~~~~i~~~ 69 (251)
..+..++|. ||||+|||++++.|++.+ +..++..+
T Consensus 199 ~~~~~vLL~-----G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 199 RTKNNPVLI-----GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSSCEEEEE-----SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCeEEE-----CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 345568899 999999999999999997 66666554
No 230
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.28 E-value=0.003 Score=53.12 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++++ ||.||||||+++.|+..+
T Consensus 101 ~g~vi~lv-----G~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVV-----GVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 46688888 999999999999999876
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.27 E-value=0.0044 Score=48.73 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++..+++. |++||||||++..|+...+
T Consensus 18 ~~G~~~~i~-----G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 18 APGVLTQVY-----GPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp CTTSEEEEE-----CSTTSSHHHHHHHHHHHHC
T ss_pred cCCEEEEEE-----CCCCCCHHHHHHHHHHHcC
Confidence 456678888 9999999999999987433
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.25 E-value=0.0032 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |++||||||+++.|+..+
T Consensus 22 ~G~~~~i~-----G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALT-----GEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 56678888 999999999999998654
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.24 E-value=0.0037 Score=52.45 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+.++..........+..++|. |+||+|||++|+.+++..
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~-----Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIH-----GDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEE-----SCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCcEEEE-----CCCCchHHHHHHHHHHhC
Confidence 34455555444333345568889 999999999999999864
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.24 E-value=0.0034 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |++||||||++..|+..+
T Consensus 103 ~~~vi~iv-----G~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVV-----GVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----cCCCChHHHHHHHHHHHH
Confidence 45567788 999999999999999877
No 235
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.0051 Score=51.41 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++++.+...+. .+ +.+.++|. ||||+||||+++.+++.+
T Consensus 32 ~~~~~l~~~l~-~~-~~~~~ll~-----G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 32 HIVKRLKHYVK-TG-SMPHLLFA-----GPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHHHHHHHHHH-HT-CCCEEEEE-----SCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCCeEEEE-----CcCCCCHHHHHHHHHHHh
Confidence 44444443333 22 33348889 999999999999999986
No 236
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.22 E-value=0.0025 Score=51.44 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++++ ||.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~ii-----G~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIM-----GPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 456678888 999999999999997644
No 237
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0037 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.++ |+.||||||+++.|+..+
T Consensus 99 ~g~vi~lv-----G~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIV-----GVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 46678888 999999999999999876
No 238
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.19 E-value=0.0086 Score=49.22 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+...++|. ||||+|||+++..|+..++
T Consensus 102 ~~~n~~~l~-----GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLF-----GPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEE-----CSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHHhhhc
Confidence 334569999 9999999999999999754
No 239
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.19 E-value=0.0042 Score=47.81 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.9
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
|...+..+|+++ |.+|+||||+...|...
T Consensus 2 m~~~~~~ki~v~-----G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 2 MEKKSSYKTVLL-----GESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCCSSEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CCCCcceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 345677899999 99999999999999765
No 240
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.007 Score=50.46 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++++.+...+. ....+. ++|. ||+|+||||+++.+++.+
T Consensus 28 ~~~~~l~~~l~-~~~~~~-~ll~-----G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 28 ETIDRLQQIAK-DGNMPH-MIIS-----GMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHHHHHHHHH-SCCCCC-EEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCe-EEEE-----CcCCCCHHHHHHHHHHHh
Confidence 44444444443 223333 8889 999999999999999986
No 241
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.12 E-value=0.0028 Score=53.45 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=26.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
..+++. |++|+||||+++.+++..++.+++..
T Consensus 32 ~~v~i~-----G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLL-----GIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEE-----CCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEE-----CCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 467788 99999999999999998876666654
No 242
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.10 E-value=0.0053 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=21.1
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. ||||+||||+++.+++.+
T Consensus 40 ~~ll~-----G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFS-----GPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEE-----SSSSSSHHHHHHHHHHHH
T ss_pred eEEEE-----CcCCcCHHHHHHHHHHHh
Confidence 38889 999999999999999986
No 243
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.09 E-value=0.0037 Score=47.97 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=27.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechhH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATGD 70 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~~ 70 (251)
.+.-++|. |++|+||||++..|.++ |+.+++-|.
T Consensus 15 ~G~gvli~-----G~SGaGKStlal~L~~r-G~~lvaDD~ 48 (181)
T 3tqf_A 15 DKMGVLIT-----GEANIGKSELSLALIDR-GHQLVCDDV 48 (181)
T ss_dssp TTEEEEEE-----ESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred CCEEEEEE-----cCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence 34567788 99999999999999885 887776653
No 244
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.07 E-value=0.006 Score=52.07 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCC
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCL 63 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~ 63 (251)
++.+.+...+. ....+..++|. ||+|+||||+++.+++.++.
T Consensus 23 ~~~~~L~~~l~-~~~~~~~~ll~-----G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 23 HVLTALANGLS-LGRIHHAYLFS-----GTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHH-HTCCCSEEEEE-----SCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH-hCCCCeEEEEE-----CCCCCCHHHHHHHHHHHhCC
Confidence 44444444443 23344567888 99999999999999998854
No 245
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=50.79 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVV-----GQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999997654
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.07 E-value=0.0029 Score=50.71 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 28 ~~Ge~~~ii-----G~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSII-----GASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEE-----ECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 355677788 999999999999997544
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.06 E-value=0.0028 Score=55.67 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=26.6
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..+. . .++-.+++. ||.||||||+.+.|...+.
T Consensus 158 ~L~~l~-~-~~ggii~I~-----GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-K-RPHGIILVT-----GPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-T-SSSEEEEEE-----CSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-H-hcCCeEEEE-----CCCCCCHHHHHHHHHhhcC
Confidence 444442 2 455678888 9999999999999988773
No 248
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.03 E-value=0.0036 Score=53.87 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.+++|+ |++||||||+++.|+..+...
T Consensus 170 g~k~~Iv-----G~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAIL-----GGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEE-----CCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEE-----CCCCCCHHHHHHHHHHHhCCC
Confidence 6788999 999999999999999987643
No 249
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0021 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+-.+.++ ||.||||||+.+.|+-.
T Consensus 30 Ge~~~i~-----G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIIL-----GPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEE-----CCTTSSHHHHHHHHTTS
T ss_pred CEEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 5677788 99999999999999764
No 250
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.01 E-value=0.0045 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=19.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+++. |++||||||++-.++.++
T Consensus 3 g~i~vi~-----G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVIT-----GPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 3456666 999999999997776655
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.00 E-value=0.0038 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+--+
T Consensus 30 ~~Ge~~~li-----G~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISII-----GSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999997654
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.00 E-value=0.0044 Score=49.57 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..++|. |++||||||++..|+..
T Consensus 22 ~~G~~~~i~-----G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMF-----GEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEE-----CCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEE-----CCCCCcHHHHHHHHHHH
Confidence 356678888 99999999999999884
No 253
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.00 E-value=0.004 Score=50.50 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFA-----GPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 567788888 999999999999997654
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.98 E-value=0.0038 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~li-----G~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAII-----GPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEE-----CCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 456678888 999999999999997654
No 255
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.0082 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |++||||||++..|+..+
T Consensus 96 ~~~vI~lv-----G~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLV-----GVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEEC-----CCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 36667777 999999999999999776
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.97 E-value=0.0046 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++++ |++||||||++..|+..+
T Consensus 104 ~g~vi~lv-----G~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLF-----GSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 46678888 999999999999998765
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.97 E-value=0.0037 Score=51.78 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+--+
T Consensus 32 ~~Ge~~~ii-----GpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAIL-----GGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHHcCC
Confidence 456677888 999999999999997654
No 258
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0058 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.++ |+.||||||+++.|+..+
T Consensus 156 ~g~vi~lv-----G~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIV-----GVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEE-----cCCCChHHHHHHHHHhhc
Confidence 56678888 999999999999999876
No 259
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.93 E-value=0.0043 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+-.+
T Consensus 48 ~~Gei~~li-----G~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVI-----GPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----cCCCCcHHHHHHHHHcCC
Confidence 456678888 999999999999997654
No 260
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.93 E-value=0.0054 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=22.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++|. |+||+|||++++.+++.++
T Consensus 47 ~vLl~-----G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVF-----GDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEE-----CCGGGCTTHHHHHHHHHSC
T ss_pred eEEEE-----CCCCccHHHHHHHHHHhCc
Confidence 38888 9999999999999999876
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.91 E-value=0.0041 Score=50.59 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+--+
T Consensus 33 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIV-----GRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 456677888 999999999999997655
No 262
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.90 E-value=0.0054 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++-.+.|+ ||.||||||+.+.|+-.
T Consensus 44 ~~Ge~~~l~-----G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIM-----GPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 456677788 99999999999999874
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.90 E-value=0.007 Score=50.29 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++-.++|. |+|||||||++..|+-.+
T Consensus 32 l~~G~~~~i~-----G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVT-----SGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence 3467788888 999999999999987765
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.89 E-value=0.0024 Score=60.79 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=27.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
++..++|. ||||+||||+++.++..++..++.+
T Consensus 510 ~~~~vLL~-----GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFY-----GPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCB-----CCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEE-----CCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45567788 9999999999999999997766554
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.89 E-value=0.0051 Score=50.10 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++-.+.|+ ||.||||||+.+.|+-.
T Consensus 27 ~~Ge~~~l~-----G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALM-----GPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 356677788 99999999999999874
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.89 E-value=0.0039 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~ii-----G~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFH-----GPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 355567788 999999999999997654
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.87 E-value=0.0043 Score=50.77 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~li-----G~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLII-----GPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 456678888 999999999999997654
No 268
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.87 E-value=0.0045 Score=51.08 Aligned_cols=27 Identities=41% Similarity=0.751 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+-.+
T Consensus 43 ~~Ge~~~i~-----G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALV-----GPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999997655
No 269
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.87 E-value=0.0045 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.++ ||.||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVA-----GSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 456678888 999999999999997654
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.86 E-value=0.0044 Score=50.16 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLI-----GANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 456678888 999999999999997654
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.86 E-value=0.0046 Score=50.68 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+-.+
T Consensus 44 ~~Ge~~~i~-----G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALV-----GHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhccC
Confidence 466678888 999999999999997654
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.86 E-value=0.0048 Score=50.52 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+--+
T Consensus 39 ~~Gei~~l~-----G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLI-----GPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 466678888 999999999999997654
No 273
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.85 E-value=0.0061 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=18.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+|.+++. |+||||||+.|..+..
T Consensus 5 ~mi~l~t-----G~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLIT-----GTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred eeEEEEE-----eCCCCCHHHHHHHHHH
Confidence 4566666 9999999999888643
No 274
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.84 E-value=0.0068 Score=46.30 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.1
Q ss_pred hhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 25 MKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 25 ~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
....|.+..+++++ |++|+||||+...|...
T Consensus 9 ~~~~~~~~~ki~iv-----G~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 9 LKSAPDQEVRILLL-----GLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCCSSCEEEEEE-----ESTTSSHHHHHHHHCCS
T ss_pred HhccCCCceEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 33445677899999 99999999999998653
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.80 E-value=0.0067 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=20.1
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++++++ |++|+||||+...|...
T Consensus 2 ~ki~v~-----G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIV-----GRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEE-----CCTTSSHHHHHHHHHHC
T ss_pred CEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 468888 99999999999999764
No 276
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.80 E-value=0.011 Score=50.33 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=26.0
Q ss_pred HhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 24 RMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 24 ~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.......++..+++. |+||+||||+...|+..+
T Consensus 48 ~l~~~~~~~~~i~i~-----G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 48 AIMPYCGNTLRLGVT-----GTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHGGGCSCSEEEEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 333334567788888 999999999999998765
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.78 E-value=0.0071 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.|+ |+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LV-----GpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMV-----GVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEE-----CCCcccHHHHHHHHHHHh
Confidence 457788888 999999999999998876
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.78 E-value=0.0051 Score=50.11 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~li-----G~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLV-----GPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence 456678888 999999999999997644
No 279
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.77 E-value=0.0069 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+++. ||+||||||+.+.|+..+
T Consensus 134 ~~g~~i~iv-----G~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVT-----GPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEE-----CSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence 356678888 999999999999998866
No 280
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.0069 Score=46.22 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+++++ |++|+||||+.+.|...
T Consensus 6 ~~~~i~lv-----G~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALI-----GNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEE-----CSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 45689999 99999999999999763
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.76 E-value=0.0054 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 31 ~~Ge~~~li-----G~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVA-----GNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence 466678888 999999999999997654
No 282
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.75 E-value=0.0068 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=20.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+++++ |++|+||||+...|...
T Consensus 3 ~~~i~v~-----G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVL-----GSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred EEEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 4678999 99999999999888753
No 283
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.74 E-value=0.0067 Score=45.13 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 4 ~~~~i~v~-----G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVV-----GNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEE-----CSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 45789999 99999999999999763
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.74 E-value=0.0053 Score=50.90 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~li-----G~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILY-----GLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence 356677788 999999999999997654
No 285
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.73 E-value=0.016 Score=49.18 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
+.++.+...+. .++.+..++|. ||+|+||||+++.+++.+...
T Consensus 9 ~~~~~l~~~i~-~~~~~~a~L~~-----G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 9 PDFEKLVASYQ-AGRGHHALLIQ-----ALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHHHHH-TTCCCSEEEEE-----CCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHH-cCCcceeEEEE-----CCCCchHHHHHHHHHHHHhCC
Confidence 34444444443 34456679999 999999999999999998643
No 286
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.72 E-value=0.007 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |++|+||||+...|...
T Consensus 6 ~~~~~i~v~-----G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIIL-----GDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 456789999 99999999999988753
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.71 E-value=0.0066 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+++++ |++|+||||+.+.|..
T Consensus 4 ~~v~lv-----G~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALI-----GNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred cEEEEE-----CCCCCCHHHHHHHHhC
Confidence 568888 9999999999999975
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.71 E-value=0.015 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.+. |++|+||||++..|+..+
T Consensus 104 ~~~vI~iv-----G~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLV-----GVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEE-----SSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45677788 999999999999998876
No 289
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.71 E-value=0.0074 Score=56.97 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.3
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCceech
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLAT 68 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~ 68 (251)
..++|. ||||+|||++|+.|++.++.+++..
T Consensus 489 ~~~ll~-----G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 489 GSFLFA-----GPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEEE-----CSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEEE-----CCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 368888 9999999999999999998665533
No 290
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.70 E-value=0.0091 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+++++ |.+|+||||+...|..
T Consensus 5 ~~~~~i~v~-----G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILIL-----GLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred CCccEEEEE-----CCCCCCHHHHHHHHhc
Confidence 467889999 9999999999999965
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.007 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |+|||||||++..++...
T Consensus 22 ~G~~~~i~-----G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLS-----GGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 56678888 999999999988886543
No 292
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.68 E-value=0.0058 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~l~-----G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVL-----GQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEE-----CCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 356677788 999999999999997654
No 293
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.67 E-value=0.0071 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+++++ |++||||||+.+.|...
T Consensus 6 ~kv~lv-----G~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLI-----GDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred EEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 567888 99999999999999764
No 294
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.66 E-value=0.0066 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++.+++++ |.+|+||||+...|...
T Consensus 3 ~~~ki~iv-----G~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIA-----GRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 46789999 99999999999999764
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.66 E-value=0.0081 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+|..|++. |++||||||++..|+..+
T Consensus 99 ~p~vIliv-----G~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMV-----GIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CcCCCCHHHHHHHHHHHH
Confidence 46778888 999999999999999876
No 296
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0089 Score=46.14 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=22.6
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+.+..+|+++ |.+|+||||+...|...
T Consensus 24 ~~~~~~ki~v~-----G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 24 AKSAEVKLAIF-----GRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---CCEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 34567899999 99999999999998764
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.64 E-value=0.0069 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+++++ |++||||||+.+.|+..
T Consensus 29 ~~kv~lv-----G~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLI-----GDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred ceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 3567888 99999999999999764
No 298
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.64 E-value=0.0086 Score=45.30 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=22.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+..+++++ |.+|+||||+...|...
T Consensus 5 ~~~~~ki~v~-----G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTV-----GDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 4567789999 99999999999988754
No 299
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.63 E-value=0.0076 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFV-----GPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----cCCCchHHHHHHHHHcCC
Confidence 466678888 999999999999998654
No 300
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0087 Score=47.13 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.+.+++. |.+||||||+...|...+
T Consensus 29 ~~~~i~i~-----G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIM-----GAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence 56688888 999999999999998875
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.0093 Score=45.75 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+.++++++ |++||||||+...|...
T Consensus 46 ~~~~~i~vv-----G~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIA-----GPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 456789999 99999999999999764
No 302
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.63 E-value=0.0066 Score=52.15 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 28 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFII-----GASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEE-----ESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEE-----CCCCchHHHHHHHHhcCC
Confidence 456678888 999999999999998644
No 303
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.61 E-value=0.0095 Score=51.27 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.3
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++..+++++ |.+||||||+++.+.-.++
T Consensus 30 ~~~~~killl-----G~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 30 SARLVKILLL-----GAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp -CCCEEEEEE-----CSTTSSHHHHHHHHHHHHS
T ss_pred hcCccEEEEE-----CCCCCcHHHHHHHHHHHhC
Confidence 4678899999 9999999999999965553
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.61 E-value=0.0092 Score=51.06 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
....++|+ |+|||||||+...|...+
T Consensus 73 ~~~~v~lv-----G~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLS-----GPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence 36788888 999999999999998754
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.60 E-value=0.0082 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+++++ |.+|+||||+...|...
T Consensus 3 ~~~~i~v~-----G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMV-----GSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 35679999 99999999999998754
No 306
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.60 E-value=0.0079 Score=51.72 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALL-----GPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEE-----cCCCchHHHHHHHHHCCC
Confidence 466678888 999999999999998654
No 307
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.60 E-value=0.0071 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.5
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+++++ |.+|+||||+...|...
T Consensus 3 ~~~i~v~-----G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVV-----GAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred eeEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 3578888 99999999999998754
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.59 E-value=0.0055 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
..+|+ |+.||||||+.+.|.-.++
T Consensus 28 ~~~i~-----G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIV-----GANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEE-----ECTTSSHHHHHHHHHHHTT
T ss_pred cEEEE-----CCCCCCHHHHHHHHHHHHc
Confidence 66777 9999999999999977654
No 309
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.58 E-value=0.0093 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 4 ~~~~ki~v~-----G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVL-----GDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEE-----CCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEE-----CcCCCCHHHHHHHHHhC
Confidence 456789999 99999999999998753
No 310
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.58 E-value=0.007 Score=45.74 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+..+++++ |.+|+||||+...|...
T Consensus 4 ~~~~~ki~~v-----G~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 4 SIPELRLGVL-----GDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCEEEEEEE-----CCGGGCHHHHHHHHHHS
T ss_pred CCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 4466789999 99999999999998763
No 311
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.0083 Score=51.63 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=23.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALL-----GPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----CCCCchHHHHHHHHhcCC
Confidence 466678888 999999999999998654
No 312
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.57 E-value=0.0099 Score=44.76 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+++++ |.+|+||||+...|..
T Consensus 6 ~~~~~i~v~-----G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIM-----GHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEE-----SCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence 467789999 9999999999999865
No 313
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.56 E-value=0.0087 Score=45.11 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 7 ~~~~~i~v~-----G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVV-----GGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 356789999 99999999999998764
No 314
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.53 E-value=0.0087 Score=51.70 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 35 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLL-----GPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----CCCCChHHHHHHHHHcCC
Confidence 466678888 999999999999998654
No 315
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.53 E-value=0.0082 Score=51.51 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 39 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLL-----GPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence 456678888 999999999999998644
No 316
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.52 E-value=0.0096 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.++++++ |.+||||||+...|...+
T Consensus 36 ~~~~~i~iv-----G~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFM-----GAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEE-----cCCCCCHHHHHHHHHHHh
Confidence 356789999 999999999999998875
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.52 E-value=0.01 Score=56.87 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+..++|+ |+||+||||+++.|+..+
T Consensus 190 ~~~~vlL~-----G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLI-----GEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEE-----ECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEE-----cCCCCCHHHHHHHHHHHH
Confidence 34467888 999999999999999987
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.51 E-value=0.009 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.|+ ||.||||||+.+.|+--+
T Consensus 52 ~~Gei~~Ii-----GpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVI-----GASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEE-----cCCCchHHHHHHHHhcCC
Confidence 455667777 999999999999997654
No 319
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.51 E-value=0.0066 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
..++|. |++|+||||+++.+++..+
T Consensus 31 ~~v~i~-----G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVL-----GLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEE-----ESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEE-----CCCCCCHHHHHHHHHHhcC
Confidence 367778 9999999999999998874
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.50 E-value=0.0094 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.4
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+++++ |.+|+||||+.+.|..
T Consensus 3 ~~ki~v~-----G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVL-----GSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred eeEEEEE-----CCCCCCHHHHHHHHHc
Confidence 4678899 9999999999999875
No 321
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.50 E-value=0.006 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.++..+++. ||.||||||+.+.|...+.
T Consensus 173 ~~G~~i~iv-----G~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVA-----GETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEE-----ESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEE-----CCCCCCHHHHHHHHHhcCC
Confidence 456679999 9999999999999988763
No 322
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.49 E-value=0.0081 Score=45.68 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+|+++ |.+|+||||+...|...
T Consensus 3 ~~~ki~v~-----G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVV-----GADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 45789999 99999999999999753
No 323
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.49 E-value=0.0096 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=20.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+..+++++ |.+|+||||+...|..
T Consensus 3 ~~~ki~i~-----G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLL-----GDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred eEEEEEEE-----CCCCccHHHHHHHHhc
Confidence 45679999 9999999999998864
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.48 E-value=0.019 Score=48.04 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+++. |++|+||||++..|+..+
T Consensus 98 ~~vi~i~-----G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLV-----GVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEE-----CSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 5567777 999999999999999776
No 325
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.47 E-value=0.012 Score=47.15 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+++. |+||+||||.+-.++.++
T Consensus 10 ~~G~i~lit-----G~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFIT-----GPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 356677777 999999999998888777
No 326
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.47 E-value=0.011 Score=46.41 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.++++++ |++|+||||+...|....
T Consensus 10 ~~~~~i~~~-----G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIA-----GPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEE-----CSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 356789999 999999999999998754
No 327
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.008 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+|+++ |.+|+||||+...|..
T Consensus 7 ~~~~~i~v~-----G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLII-----GDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEE-----CCTTSCHHHHHHHHCS
T ss_pred CcceEEEEE-----CCCCCCHHHHHHHHhc
Confidence 356789999 9999999999998854
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.46 E-value=0.0079 Score=49.56 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..++|. |++||||||++..++...
T Consensus 29 ~G~i~~i~-----G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALV-----SPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 55678888 999999999999987543
No 329
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.45 E-value=0.0057 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+++. |+|||||||++..+++.+
T Consensus 47 ~~li~-----G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTIN-----GPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred EEEEE-----eCCCCCHHHHHHHHHHHH
Confidence 78888 999999999999998877
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.43 E-value=0.0047 Score=52.13 Aligned_cols=19 Identities=42% Similarity=0.438 Sum_probs=16.6
Q ss_pred ccCCCCCChhHHHHHHHHH
Q 025529 42 LAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 42 i~G~~gsGKST~a~~La~~ 60 (251)
|+|+.||||||+.+.|...
T Consensus 9 i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEESSSSSCHHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHHHhh
Confidence 3499999999999999864
No 331
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.41 E-value=0.0088 Score=45.66 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+....+++++ |.+|+||||+...|...
T Consensus 4 ~~~~~ki~v~-----G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVV-----GDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 3456789999 99999999999999764
No 332
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.41 E-value=0.0064 Score=46.12 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+|+++ |.+|+||||+...|..
T Consensus 4 ~~~~ki~~~-----G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAIL-----GYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred CceEEEEEE-----CcCCCCHHHHHHHHHc
Confidence 356789999 9999999999999874
No 333
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.40 E-value=0.008 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.++ |++||||||+.+.|+...
T Consensus 4 ~v~lv-----G~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVV-----GQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEE-----ESSSSSHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 45566 999999999999998765
No 334
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.40 E-value=0.01 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 6 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIIL-----GDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 456789999 99999999999998764
No 335
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0074 Score=53.68 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++.++.|+ ||.||||||+++.|+..+
T Consensus 135 i~~Ge~v~Iv-----GpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIV-----GGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEE-----ESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEE-----CCCCCCHHHHHHHHhCcc
Confidence 3577889999 999999999999998765
No 336
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.39 E-value=0.0087 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.5
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+++++ |++|+||||+...|...
T Consensus 3 ~~~i~v~-----G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLL-----GEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred eEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 4578888 99999999999988653
No 337
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.39 E-value=0.0052 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.4
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
..++|. ||||+|||++|+.|+...+
T Consensus 42 ~~VLL~-----GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLL-----GPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEE-----CCSSSSHHHHHHHGGGGBS
T ss_pred CeeEee-----cCchHHHHHHHHHHHHHHh
Confidence 468889 9999999999999999874
No 338
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.38 E-value=0.0097 Score=51.41 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILL-----GPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEE-----CSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEE-----CCCCcHHHHHHHHHHcCC
Confidence 356677888 999999999999998644
No 339
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.38 E-value=0.0068 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
.+..+++++ |++|+||||+...|.
T Consensus 16 ~~~~~i~v~-----G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILIL-----GLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEE-----EETTSSHHHHHHHTC
T ss_pred CCccEEEEE-----CCCCCCHHHHHHHHh
Confidence 578899999 999999999998885
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.01 Score=44.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+++++ |.+|+||||+...|..
T Consensus 3 ~~~i~v~-----G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVF-----GAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEE-----CCTTSSHHHHHHHHHT
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHc
Confidence 4678899 9999999999999875
No 341
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.36 E-value=0.0086 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+++++ |++|+||||+.+.|+.
T Consensus 3 ~kv~iv-----G~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIV-----GNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEE-----SCTTSSHHHHHHHHTC
T ss_pred eEEEEE-----CCCCCCHHHHHHHHhc
Confidence 468888 9999999999999875
No 342
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.35 E-value=0.24 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=18.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..++|+ || ||+|+.+.|.+.+.
T Consensus 530 ~~r~vvl~-----GP---~K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 530 YARPIIIL-----GP---TKDRANDDLLSEFP 553 (721)
T ss_pred CCCEEEEE-----CC---CHHHHHHHHHHhCc
Confidence 34557777 88 49999999998763
No 343
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.34 E-value=0.0096 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+|+++ |.+|+||||+...|...
T Consensus 20 ~~~ki~vv-----G~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVV-----GAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 45789999 99999999999999764
No 344
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.34 E-value=0.021 Score=53.90 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..+..++|. |+||+||||+++.|+..+
T Consensus 205 ~~~~~vlL~-----G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLV-----GESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEE-----cCCCCCHHHHHHHHHHHH
Confidence 356678899 999999999999999987
No 345
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.33 E-value=0.0096 Score=46.19 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+..+|+++ |.+|+||||+...|...
T Consensus 21 ~~~~~ki~vv-----G~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVIL-----GYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEE-----CCCCcCHHHHHHHHHhC
Confidence 4577889999 99999999999999764
No 346
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.32 E-value=0.0099 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..|++. |++|+||||++..|+..+
T Consensus 99 ~~vI~iv-----G~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLV-----GIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEE-----CCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 4578888 999999999999999876
No 347
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.32 E-value=0.0082 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+-.+
T Consensus 62 ~~Ge~~~i~-----G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVA-----GSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEE-----ESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 456677788 999999999999997654
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.32 E-value=0.0057 Score=51.40 Aligned_cols=27 Identities=37% Similarity=0.666 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.++|+ ||.||||||+.+.|+..+
T Consensus 78 ~~Ge~vaiv-----G~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALV-----GPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEE-----SSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCchHHHHHHHHHcCC
Confidence 456677788 999999999999997765
No 349
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.32 E-value=0.016 Score=45.13 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++...++. |++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~-----G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIV-----GPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 356677777 999999999999988887
No 350
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.29 E-value=0.011 Score=49.97 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC--Cceech
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC--LCHLAT 68 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~--~~~i~~ 68 (251)
+..++|. ||||+||||++..++...| +.+++.
T Consensus 123 gsviLI~-----GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVT-----GKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEE-----CSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEE-----cCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3446777 9999999999999987543 445565
No 351
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.29 E-value=0.3 Score=40.57 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
.+..++|+ || ||+|+.+.|.+.+.
T Consensus 99 ~~RpvVl~-----Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 99 YTRPVIIL-----GP---LKDRINDDLISEYP 122 (292)
T ss_dssp SCCCEEEE-----ST---THHHHHHHHHHHCT
T ss_pred CCCeEEEe-----CC---CHHHHHHHHHHhCh
Confidence 33448888 88 59999999998874
No 352
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.29 E-value=0.0072 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 24 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVIL-----GPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEE-----CCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEE-----CCCCccHHHHHHHHHcCC
Confidence 456678888 999999999999998644
No 353
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.29 E-value=0.011 Score=44.10 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+++++ |.+|+||||+...|...
T Consensus 5 ~~~~i~v~-----G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLL-----GEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEE-----CCTTSCHHHHHHHHHHC
T ss_pred cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 45688999 99999999999998754
No 354
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.28 E-value=0.014 Score=44.65 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+..+|+++ |.+|+||||+...|...
T Consensus 17 ~~~~~ki~iv-----G~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIV-----GNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEE-----CCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 4567889999 99999999999877653
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.27 E-value=0.01 Score=46.49 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.....+++++ |.+|+||||+...|...
T Consensus 25 ~~~~~ki~vv-----G~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 25 QNVKCKIVVV-----GDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --CEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 3466789999 99999999999999764
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.27 E-value=0.0061 Score=47.56 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..++.+++++ |++||||||+.+.|..
T Consensus 23 ~~~~~~v~lv-----G~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFA-----GRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEE-----ECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEE-----CCCCCCHHHHHHHHhC
Confidence 3467789999 9999999999988853
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.27 E-value=0.01 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+++++ |++|+||||+.+.|...
T Consensus 5 ~~~~i~v~-----G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLL-----GDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 45678999 99999999999998754
No 358
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.26 E-value=0.013 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++|. ||||+|||++|+.|++.+
T Consensus 523 ~~Ll~-----Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFL-----GPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEE-----SCTTSSHHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 58889 999999999999999987
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.25 E-value=0.008 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+..+|+++ |.+|+||||+...|..
T Consensus 5 ~~~~i~v~-----G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLL-----GESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred ceEEEEEE-----CCCCCCHHHHHHHHHc
Confidence 45678999 9999999999999875
No 360
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.25 E-value=0.0028 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=18.9
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++|.||.||||||+.+.|+-.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4566999999999999998765
No 361
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.25 E-value=0.011 Score=44.01 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
..+++++ |.+|+||||+.+.|.
T Consensus 2 ~~ki~~v-----G~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLL-----GAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEE-----ESTTSSHHHHHHHHC
T ss_pred eEEEEEE-----CCCCCCHHHHHHHHc
Confidence 3578888 999999999998884
No 362
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.24 E-value=0.012 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.2
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+|+++ |.+|+||||+...|..
T Consensus 3 ~ki~iv-----G~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLV-----GESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred EEEEEE-----CCCCCCHHHHHHHHHh
Confidence 468888 9999999999998864
No 363
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.23 E-value=0.014 Score=44.28 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+..+|+++ |.+|+||||+...|...
T Consensus 15 ~~~~~ki~v~-----G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVV-----GDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 3456789999 99999999999998754
No 364
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.22 E-value=0.009 Score=44.93 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+++++ |.+|+||||+...|..
T Consensus 12 ~~~~~i~v~-----G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 12 LRKFKLVFL-----GEQSVGKTSLITRFMY 36 (179)
T ss_dssp CEEEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred CcceEEEEE-----CCCCCCHHHHHHHHHc
Confidence 345789999 9999999999999874
No 365
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.22 E-value=0.018 Score=46.16 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+...++++. |++|+||||++-.++..+
T Consensus 4 ~g~l~I~~~-----~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLG-----AAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEE-----SSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 345678888 999999999988887665
No 366
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.22 E-value=0.011 Score=50.67 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.|. |++||||||++..|+-..
T Consensus 129 ~~G~i~~I~-----G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVF-----GEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 356678888 999999999999999876
No 367
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.21 E-value=0.017 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+...+++. |.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~-----GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFV-----GTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEe-----CCCCCCHHHHHHHHHHHH
Confidence 445566666 999999999999999655
No 368
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.20 E-value=0.0094 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
....+|+++ |.+|+||||+...|..
T Consensus 23 ~~~~ki~v~-----G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVI-----GSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEE-----ESTTSSHHHHHHHHHC
T ss_pred CcceEEEEE-----CcCCCCHHHHHHHHHh
Confidence 456789999 9999999999998864
No 369
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.19 E-value=0.012 Score=45.04 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 21 ~~~~~i~v~-----G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALA-----GRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEE-----EBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 356789999 99999999999998653
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.18 E-value=0.013 Score=44.29 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 16 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMV-----GSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHhhC
Confidence 356789999 99999999999999754
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.18 E-value=0.0054 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~-----G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVC-----GGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEE-----ESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 45578899 999999999999998876
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.18 E-value=0.015 Score=45.00 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 12 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMV-----GSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 456789999 99999999999998754
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.16 E-value=0.012 Score=51.26 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++-.+.|+ ||.||||||+.+.|+--
T Consensus 45 ~~Ge~~~ll-----GpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLL-----GRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEE-----ESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEE-----CCCCChHHHHHHHHhCC
Confidence 466678888 99999999999999764
No 374
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.16 E-value=0.0091 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.3
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+++. |+||+||||++..+...+
T Consensus 204 ~~~~~I~-----G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLT-----GGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEE-----cCCCCCHHHHHHHHHHHH
Confidence 4567888 999999999999998765
No 375
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.15 E-value=0.015 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+++++ |++|+||||+...|...
T Consensus 6 ~~~~i~v~-----G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILL-----GDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45678999 99999999999998653
No 376
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.15 E-value=0.013 Score=44.99 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..+|+++ |.+|+||||+...|...
T Consensus 19 ~~~~~ki~v~-----G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLV-----GLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 3457889999 99999999999999753
No 377
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.12 E-value=0.013 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+++++ |++|+||||+...|..
T Consensus 3 ~~~i~v~-----G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLI-----GDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred ceEEEEE-----CcCCCCHHHHHHHHHh
Confidence 4578888 9999999999999875
No 378
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.11 E-value=0.013 Score=44.21 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 10 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLL-----GDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEE-----CCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 345789999 99999999999988653
No 379
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.11 E-value=0.015 Score=44.30 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 16 ~~~~~i~v~-----G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLML-----GLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEE-----CSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 467899999 99999999999998653
No 380
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.10 E-value=0.013 Score=45.20 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=20.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |++|+||||+...|...
T Consensus 21 ~~~~ki~~v-----G~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFL-----GLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 355689999 99999999999999763
No 381
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.09 E-value=0.015 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..|++. |++||||||++..|+..+
T Consensus 100 ~~~vI~iv-----G~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFV-----GLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45678888 999999999999999766
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.08 E-value=0.013 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+|+++ |.+|+||||+...|..
T Consensus 10 ~~~ki~v~-----G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLAL-----GDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-----CCCCCCHHHHHHHHhc
Confidence 46789999 9999999999999975
No 383
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.06 E-value=0.011 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=22.9
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+..++|+ ||+|+||||+++.|+..+.
T Consensus 60 g~~vll~-----Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLI-----GEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEE-----CCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEE-----eCCCCCHHHHHHHHhccCC
Confidence 3468888 9999999999999999874
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.05 E-value=0.0091 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.+.|+ ||.||||||+.+.|+--+
T Consensus 30 e~~~li-----G~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLS-----GGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred ceEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 567777 999999999999998765
No 385
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.022 Score=47.77 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 16 DLMTELLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++++.+.+.+.. +. ++.++|. ||||+||||+++.|++.+
T Consensus 4 ~~~~~L~~~i~~-~~-~~~~Lf~-----Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 4 DQLETLKRIIEK-SE-GISILIN-----GEDLSYPREVSLELPEYV 42 (305)
T ss_dssp CHHHHHHHHHHT-CS-SEEEEEE-----CSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CcEEEEE-----CCCCCCHHHHHHHHHHhC
Confidence 344444444432 23 7789999 999999999999999863
No 386
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.04 E-value=0.015 Score=44.48 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+|+++ |.+|+||||+.+.|...+
T Consensus 13 ~~~ki~vv-----G~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYY-----GPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEE-----CCCCCCHHHHHHHHHhhc
Confidence 46789999 999999999998887654
No 387
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.04 E-value=0.014 Score=44.68 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+..+|+++ |.+|+||||+...|...
T Consensus 22 ~~~~~ki~v~-----G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLI-----GESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 3456789999 99999999999998763
No 388
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=43.99 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 8 ~~~~~i~v~-----G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLV-----GDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEE-----CcCCCCHHHHHHHHHhC
Confidence 356789999 99999999999998654
No 389
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.03 E-value=0.017 Score=44.66 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+..+|+++ |.+|+||||+...|...
T Consensus 25 ~~~~~ki~v~-----G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLA-----GDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEE-----SSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEE-----CcCCCCHHHHHHHHHhC
Confidence 3467889999 99999999999998753
No 390
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.03 E-value=0.015 Score=45.31 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=23.5
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+..+|+++ |.+|+||||+...|...
T Consensus 5 ~~~~~~ki~i~-----G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 5 SVSKFIKCVTV-----GDGAVGKTCMLICYTSN 32 (212)
T ss_dssp SCCCEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred CcCceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 34566789999 99999999999998753
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.00 E-value=0.0075 Score=51.74 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ ||.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~ll-----GpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGIL-----GPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEE-----CSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----CCCCCcHHHHHHHHhCCC
Confidence 466678888 999999999999998644
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.00 E-value=0.015 Score=46.62 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 27 ~~~~~i~lv-----G~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLV-----GKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEE-----CCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHcCC
Confidence 456789999 99999999999998653
No 393
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.01 Score=45.56 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+|+++ |.+|+||||+...|...
T Consensus 17 ~~~ki~v~-----G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVV-----GDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 45688999 99999999999999764
No 394
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.99 E-value=0.015 Score=44.76 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+..+++++ |.+|+||||+...|..
T Consensus 26 ~~~~~ki~v~-----G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMV-----GLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEE-----ESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEE-----CCCCCCHHHHHHHHHh
Confidence 4567899999 9999999999998853
No 395
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.99 E-value=0.015 Score=43.94 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+++++ |.+|+||||+...|...
T Consensus 4 ~~~~i~~~-----G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVV-----GDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45678999 99999999999988753
No 396
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.98 E-value=0.016 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.|. |||||||||++..++...
T Consensus 60 ~G~i~~I~-----GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIF-----GQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 56677888 999999999999998764
No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.019 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
....+|+++ |.+|+||||+...|..
T Consensus 6 ~~~~ki~vv-----G~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVF-----GAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEE-----ECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEE-----CCCCCcHHHHHHHHHc
Confidence 456789999 9999999999999976
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.97 E-value=0.017 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+|+++ |.+|+||||+...|..
T Consensus 18 ~~~~ki~v~-----G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVI-----GDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred CceEEEEEE-----CCCCCCHHHHHHHHHc
Confidence 456789999 9999999999998865
No 399
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.97 E-value=0.015 Score=44.34 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..++++++ |.+|+||||+...|...
T Consensus 22 ~~~~i~v~-----G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFV-----GRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEE-----EBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45689999 99999999999998654
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.94 E-value=0.0094 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=22.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+..+++. ||+||||||+.+.|...+
T Consensus 259 ~g~~i~I~-----GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVV-----GETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEE-----ESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHHhhC
Confidence 45568888 999999999999998766
No 401
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.94 E-value=0.016 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+++++ |.+|+||||+...|...
T Consensus 14 ~~~~i~v~-----G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIII-----GDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45789999 99999999999999764
No 402
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.93 E-value=0.014 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+|+++ |.+|+||||+...|...
T Consensus 9 ~~~ki~v~-----G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVI-----GNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45789999 99999999999998754
No 403
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.017 Score=44.10 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
..+..+++++ |.+|+||||+...|..
T Consensus 13 ~~~~~~i~v~-----G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIV-----GLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEE-----ESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEE-----CCCCCCHHHHHHHHhc
Confidence 3567899999 9999999999999974
No 404
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.92 E-value=0.015 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++++++ |++||||||+...|...
T Consensus 3 ~~~i~lv-----G~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALV-----GNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEE-----ECSSSSHHHHHHHHHTT
T ss_pred eeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 4578888 99999999999999654
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.91 E-value=0.018 Score=44.13 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 19 ~~~~ki~vv-----G~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAIL-----GRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEE-----CCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEE-----CCCCCcHHHHHHHHHhC
Confidence 456789999 99999999999988754
No 406
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.91 E-value=0.021 Score=47.66 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |+.|+||||++..|+..+
T Consensus 97 ~~~~i~i~-----g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLV-----GLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEE-----CCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45567777 999999999999998876
No 407
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.91 E-value=0.02 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+++++ |.+|+||||+...|...
T Consensus 2 ki~~~-----G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMV-----GLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred EEEEE-----CCCCCCHHHHHHHHHcC
Confidence 57888 99999999999999654
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.90 E-value=0.019 Score=45.60 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+|+++ |.+|+||||+...|..
T Consensus 27 ~~~~kI~vv-----G~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILS-----GAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEE-----CSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhC
Confidence 457889999 9999999999998865
No 409
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.87 E-value=0.018 Score=44.97 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+++++ |.+|+||||+...|...
T Consensus 5 ~~~~ki~vv-----G~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFV-----GLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 356789999 99999999999999764
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.83 E-value=0.017 Score=44.31 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+...++|+++ |.+|+||||+...|..
T Consensus 14 ~~~~~ki~v~-----G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMC-----GLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEE-----CCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEE-----CCCCCCHHHHHHHHhc
Confidence 4567889999 9999999999998854
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.82 E-value=0.017 Score=44.43 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+..+++++ |.+|+||||+...|...
T Consensus 20 ~~~~~ki~~v-----G~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVV-----GDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 3456889999 99999999999998764
No 412
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.82 E-value=0.015 Score=55.61 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=21.9
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
..++|. ||||+|||++|+.|++.+
T Consensus 589 ~~vLl~-----Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFL-----GPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEB-----SCSSSSHHHHHHHHHHHH
T ss_pred eEEEEE-----CCCCCCHHHHHHHHHHHh
Confidence 368888 999999999999999988
No 413
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.79 E-value=0.019 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++..++|+ |++||||||+.+.|.-.
T Consensus 214 ~G~~~~lv-----G~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFA-----GQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEE-----CCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEE-----CCCCccHHHHHHHHhcc
Confidence 34568888 99999999999999754
No 414
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.78 E-value=0.022 Score=50.05 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.4
Q ss_pred HhhccCCCCeE--EEEEeecccCCCCCChhHHHHHHHHH
Q 025529 24 RMKCASKPDKR--LILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 24 ~~~~~~~~~~~--i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+...-.++-. ++|+ |++||||||+.+.|+..
T Consensus 32 ~vsl~i~~Gei~~vaLv-----G~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCV-----GETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEE-----CSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEE-----CCCCCCHHHHHHHHhCc
Confidence 33333345555 8899 99999999999999654
No 415
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.74 E-value=0.021 Score=44.05 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
+.+..+|+++ |.+|+||||+...|..
T Consensus 17 ~~~~~ki~~~-----G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLV-----GDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEE-----CSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEE-----CCCCCCHHHHHHHHHh
Confidence 4567889999 9999999999998864
No 416
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.024 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.1
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
++..+++. |+||+|||++|..++.
T Consensus 29 ~G~l~~i~-----G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLT-----GGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEE-----CCTTSSHHHHHHHHHH
T ss_pred CCeEEEEE-----eCCCCCHHHHHHHHHH
Confidence 56678888 9999999999988754
No 417
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.019 Score=52.14 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.++-.+.++ ||.||||||+.+.|+-.+
T Consensus 21 ~~~~Gei~gLi-----GpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVL-----GKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEE-----CCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 45677889999 999999999999997654
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.01 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.9
Q ss_pred ecccCCCCCChhHHHHHHHHHh
Q 025529 40 VWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 40 i~i~G~~gsGKST~a~~La~~~ 61 (251)
++|.|+.||||||+.+.|+-.+
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3444999999999999997654
No 419
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.70 E-value=0.016 Score=44.05 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+.+..+++++ |.+|+||||+...|...
T Consensus 18 ~~~~~~i~v~-----G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIV-----GLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEE-----EETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 3467889999 99999999999999753
No 420
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.70 E-value=0.018 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+|+++ |.+|+||||+...|..
T Consensus 32 ~~~~ki~vv-----G~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLV-----GDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEE-----ECTTSSHHHHHHHHHC
T ss_pred cceEEEEEE-----CcCCCCHHHHHHHHHc
Confidence 456789999 9999999999999864
No 421
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.70 E-value=0.017 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=21.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+++++ |++|+||||+.+.|..
T Consensus 23 ~~~~ki~lv-----G~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFL-----GLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEE-----EETTSSHHHHHHHHSC
T ss_pred CCCcEEEEE-----CCCCCCHHHHHHHHhc
Confidence 456789999 9999999999998853
No 422
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.70 E-value=0.018 Score=49.68 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+..+++ +|+|++|+||||+++.+++.+
T Consensus 49 ~~~~~li---~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIY---GSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEE---ECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEE---eCcCcCCCCHHHHHHHHHHHH
Confidence 4445666 123999999999999998875
No 423
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.69 E-value=0.02 Score=46.42 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 20 ~~~~~I~lv-----G~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILV-----GKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEE-----ECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 356789999 99999999999999754
No 424
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.68 E-value=0.031 Score=45.76 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.9
Q ss_pred ccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 27 CASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 27 ~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
....+..+|+++ |.+|+||||+...|...
T Consensus 34 ~~~~~~~~I~vv-----G~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 34 QEDVNSLTILVM-----GKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HTTCCEEEEEEE-----ESTTSSHHHHHHHHHTS
T ss_pred hcCCCCeEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 334567899999 99999999999998753
No 425
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.68 E-value=0.032 Score=46.91 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+.-++|. |++|+||||++..|.++ |+.+++-|
T Consensus 143 ~g~~vl~~-----G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLIT-----GDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEE-----ESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEE-----eCCCCCHHHHHHHHHhc-CCceecCC
Confidence 35668888 99999999999999885 87777554
No 426
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.66 E-value=0.026 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..|++. |++|+||||++..|+..+
T Consensus 99 ~~~vI~iv-----G~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMA-----GLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEE-----CSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45677777 999999999999998666
No 427
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.65 E-value=0.022 Score=47.60 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+..++++ |++||||||+.+.|. ..
T Consensus 164 ~G~i~~l~-----G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILA-----GPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEE-----CSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEE-----CCCCCCHHHHHHHHH-Hh
Confidence 45577888 999999999999998 54
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.65 E-value=0.017 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.5
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+++++ |.+|+||||+...|...
T Consensus 2 ~ki~v~-----G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFA-----GRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEE-----EBTTSSHHHHHHHHHSC
T ss_pred cEEEEE-----CCCCCCHHHHHHHHhCc
Confidence 367888 99999999999998753
No 429
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.64 E-value=0.021 Score=48.88 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.|. |+|||||||++..++...
T Consensus 60 ~G~iv~I~-----G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIY-----GPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEE-----ESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 56678888 999999999999988654
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.61 E-value=0.032 Score=49.25 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+++.+ ..-.++-++.|+ ||+||||||+.+.|+..+.
T Consensus 147 vld~v-l~i~~Gq~~~Iv-----G~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLF-----AGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHH-SCCBTTCEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred EEeee-EEecCCCEEEEE-----CCCCCCHHHHHHHHhcccC
Confidence 55556 444577789999 9999999999999999874
No 431
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.61 E-value=0.017 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+++++ |.+|+||||+...|...
T Consensus 21 ~~~ki~vv-----G~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLI-----GNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 45689999 99999999999998754
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.61 E-value=0.024 Score=43.34 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 15 ~~~ki~v~-----G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLI-----GDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CcCCCCHHHHHHHHHcC
Confidence 45789999 99999999999998753
No 433
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.60 E-value=0.021 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+.|+ |++||||||+.+.|.-.
T Consensus 68 ~~~~valv-----G~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVT-----GETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEE-----ECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEE-----CCCCCcHHHHHHHHhCC
Confidence 34478889 99999999999999763
No 434
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.60 E-value=0.019 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
++..+.|. |+|||||||++..|+-
T Consensus 177 ~Gei~~I~-----G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELF-----GEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEE-----ESTTSSHHHHHHHHHH
T ss_pred CCcEEEEE-----cCCCCChHHHHHHHHH
Confidence 56678888 9999999999998763
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.60 E-value=0.015 Score=44.93 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+.+..+|+++ |.+|+||||+.+.+...
T Consensus 16 ~~~~~~ki~~v-----G~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 16 FQGSKPRILLM-----GLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ----CCEEEEE-----ESTTSSHHHHHHHHHSC
T ss_pred ccCcceEEEEE-----CCCCCCHHHHHHHHHhc
Confidence 34567899999 99999999999877654
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.59 E-value=0.012 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+.+. |++||||||+++.|+...
T Consensus 279 ~~G~i~~i~-----G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILAT-----GATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEE-----ECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence 466678888 999999999999998654
No 437
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.59 E-value=0.022 Score=43.60 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 19 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIII-----GDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEE-----SSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 345679999 99999999999998753
No 438
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.019 Score=44.82 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
....+|+++ |.+|+||||+...|...
T Consensus 24 ~~~~ki~lv-----G~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLI-----GNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEE-----CcCCCCHHHHHHHHHhC
Confidence 345789999 99999999999998754
No 439
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.016 Score=44.33 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 13 ~~~~~i~v~-----G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILII-----GESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHHcC
Confidence 356789999 99999999999999654
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.023 Score=43.54 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
...+|+++ |.+|+||||+...|....
T Consensus 22 ~~~ki~v~-----G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLII-----GNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEE-----CCCCcCHHHHHHHHhcCC
Confidence 45789999 999999999999997653
No 441
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.55 E-value=0.019 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..+++++ |.||+||||+...|..
T Consensus 3 ~~~~kI~lv-----G~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALA-----GCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEE-----CCTTSSHHHHHHHHHT
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHHC
Confidence 345678999 9999999999999975
No 442
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.54 E-value=0.026 Score=48.05 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++..+.|. |+|||||||++..++..
T Consensus 120 ~~G~i~~I~-----G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAF-----GEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEE-----CCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEE-----CCCCCCHHHHHHHHHHH
Confidence 356678888 99999999999999886
No 443
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.54 E-value=0.039 Score=44.93 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=26.7
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+.+.....+..+|+++ |.+|+||||+...|...
T Consensus 25 ~~~~~~~~~~~~~~I~lv-----G~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 25 FFGKLKQKDMNSMTVLVL-----GKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHTTCCEEEEEEE-----ECTTSSHHHHHHHHHTS
T ss_pred HHHHHhhccCCCcEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 334444444567899999 99999999999999753
No 444
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.54 E-value=0.028 Score=48.01 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHhhccCCCCeEEEEEeecccCCCCCChhHHHHHHHHHhC
Q 025529 21 LLRRMKCASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEYC 62 (251)
Q Consensus 21 ~~~~~~~~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~ 62 (251)
+++.+ ..-.++-++.|+ |++||||||+.+.|+....
T Consensus 61 ald~l-l~i~~Gq~~gIi-----G~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIF-----AGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHH-SCEETTCEEEEE-----ECTTSSHHHHHHHHHHHSC
T ss_pred EEEee-eeecCCCEEEEE-----CCCCCCHHHHHHHHhcCCC
Confidence 45555 333477789999 9999999999999999874
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.53 E-value=0.023 Score=46.03 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 19 ~~~l~I~lv-----G~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILV-----GRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEE-----SSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEE-----CCCCCcHHHHHHHHhCC
Confidence 467889999 99999999999988643
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.52 E-value=0.023 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 28 ~~~~ki~vv-----G~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVV-----GDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEE-----CcCCCCHHHHHHHHHhC
Confidence 467899999 99999999999988753
No 447
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.018 Score=44.17 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 21 ~~~~ki~vv-----G~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLL-----GDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEE-----ECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 356789999 99999999999998754
No 448
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.015 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.|+ ||.||||||+.+.|+-.+
T Consensus 380 iv~ii-----G~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMM-----GENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEE-----SCTTSSHHHHHHHHHTSS
T ss_pred EEEEE-----CCCCCcHHHHHHHHhcCC
Confidence 35556 999999999999997644
No 449
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.018 Score=44.06 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 19 ~~~~ki~v~-----G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCL-----GLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEE-----ECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 467889999 99999999999988654
No 450
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.028 Score=43.63 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
....+|+++ |.+|+||||+...|...
T Consensus 18 ~~~~~i~v~-----G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLI-----GDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEE-----CSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 356789999 99999999999998753
No 451
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.025 Score=44.59 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+....+|+++ |.+|+||||+...|...
T Consensus 10 ~~~~~ki~v~-----G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 10 YDLLFKIVLI-----GDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CCEEEEEEEE-----SCTTSSHHHHHHHHHHC
T ss_pred CCeeeEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 3455789999 99999999999998763
No 452
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.36 E-value=0.023 Score=44.10 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 7 ~~~ki~v~-----G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLI-----GNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEE-----ESTTSSHHHHHHHHHHC
T ss_pred cceEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 45689999 99999999999998753
No 453
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.32 E-value=0.029 Score=43.35 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+|+++ |.+|+||||+...|...
T Consensus 8 ~~ki~v~-----G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILII-----GNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEE-----CSTTSSHHHHHHHHHTC
T ss_pred eeEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 4678999 99999999999998653
No 454
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.32 E-value=0.033 Score=48.96 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+++. |+.||||||++..|+..+
T Consensus 97 ~~~vi~i~-----G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLV-----GLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 45667777 999999999999999877
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.31 E-value=0.028 Score=51.00 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+.++ |+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~Lv-----G~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIV-----GPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 466788888 999999999999998654
No 456
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.26 E-value=0.027 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..++++ |++||||||+.+.|+..
T Consensus 168 ~geiv~l~-----G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMA-----GLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEE-----CSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEE-----CCCCCcHHHHHHHhccc
Confidence 34567888 99999999999999643
No 457
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.25 E-value=0.019 Score=43.81 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
.+..+++++ |.+|+||||+...|.
T Consensus 20 ~~~~~i~v~-----G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLML-----GLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEE-----EETTSSHHHHHHHTC
T ss_pred CCceEEEEE-----CCCCCCHHHHHHHHH
Confidence 567899999 999999999999884
No 458
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.23 E-value=0.021 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.2
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+..+++. |+||+||||++..+...+
T Consensus 164 ~~~~vi~-----G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVIS-----GGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEE-----CCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEE-----eCCCCCHHHHHHHHHHHH
Confidence 4578888 999999999888776554
No 459
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.23 E-value=0.023 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+++++ |.+|+||||+...|..
T Consensus 22 ~~~ki~vv-----G~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLV-----GESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEE-----CSTTSSHHHHHHHTCC
T ss_pred cEEEEEEE-----CCCCCCHHHHHHHHHh
Confidence 45689999 9999999999998853
No 460
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.22 E-value=0.23 Score=41.58 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=45.7
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHHhCCce-echhHHHHHHHHcCCchHHHHHHHHHcCCCcCHHHHHHHHHHHHcC
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 111 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~-i~~~~li~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ll~~~l~~ 111 (251)
.-++|+ || ||+|+.+.|.+.+.-.| +.+. +.+ . ..++..++-..+.+++.
T Consensus 146 RPvVl~-----GP---~k~~l~~~L~~~~P~~F~~~v~--~~r----------~----i~~~~fis~~~V~~vl~----- 196 (308)
T 3kfv_A 146 RPVVIL-----GP---VADIAMQKLTAEMPDQFEIAET--VSR----------T----DSPSKIIKLDTVRVIAE----- 196 (308)
T ss_dssp CCEEEE-----ST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHHHH-----
T ss_pred CeEEEe-----Cc---cHHHHHHHHHHhCccccccccc--ccc----------c----ccCCCeecHHHHHHHHH-----
Confidence 348888 99 79999999988773221 1211 001 1 34566666655555553
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHHHHHhcCCCcCEEEEEecC-HHHHHHH
Q 025529 112 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEER 160 (251)
Q Consensus 112 ~~~~~~~Iidg~~~~~~~~~~l~~~~~~~~~~~~~vI~L~~~-~e~~~~R 160 (251)
.++.+|+|--+....+.. .....| ++||+..| .+++.+|
T Consensus 197 --~Gk~~ILDId~QGa~~lk-------~~~~~p-i~IFI~PPS~eeL~~r 236 (308)
T 3kfv_A 197 --KDKHALLDVTPSAIERLN-------YVQYYP-IVVFFIPESRPALKAL 236 (308)
T ss_dssp --TTCEEEECCCHHHHHHHH-------HTTCCC-EEEEEEESCHHHHHHH
T ss_pred --CCCcEEEEECHHHHHHHH-------hcCCCC-EEEEEeCCCHHHHHHH
Confidence 245688885443332222 122445 55556554 4566654
No 461
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.22 E-value=0.023 Score=47.72 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHhCCceechh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEYCLCHLATG 69 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~~~~~i~~~ 69 (251)
.+.-++|. |++|+||||+|-.|.+ .|+.+++-|
T Consensus 146 ~g~gvli~-----G~sG~GKStlal~l~~-~G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLT-----GRSGIGKSECALDLIN-KNHLFVGDD 178 (312)
T ss_dssp TTEEEEEE-----ESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred CCEEEEEE-----cCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence 34557777 9999999999999977 487777655
No 462
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.21 E-value=0.034 Score=47.70 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh-----CCceech
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY-----CLCHLAT 68 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~-----~~~~i~~ 68 (251)
++..++|. |+||+||||+|..++... .+.++++
T Consensus 62 ~G~ii~I~-----G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIY-----GPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEE-----CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45567777 999999999999988754 3445665
No 463
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.027 Score=43.85 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 24 ~~~ki~vv-----G~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVV-----GDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 45689999 99999999999998763
No 464
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.17 E-value=0.026 Score=47.18 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.++.+++++ |+||+||||+...|...
T Consensus 6 ~r~~~VaIv-----G~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIV-----GRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEE-----CSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEE-----CCCCCCHHHHHHHHHCC
Confidence 345578888 99999999999999753
No 465
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.16 E-value=0.029 Score=51.31 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
-.++..++++ ||.||||||+.+.|+..+
T Consensus 366 i~~G~~~~iv-----G~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALV-----GRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEE-----CCCCCCHHHHHHHHhcCC
Confidence 3566678888 999999999999998766
No 466
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.15 E-value=0.036 Score=43.52 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+..+|+++ |.+|+||||+...|...
T Consensus 25 ~~~~ki~vv-----G~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLV-----GDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEE-----CSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEE-----CcCCCCHHHHHHHHhcC
Confidence 456789999 99999999999998764
No 467
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.15 E-value=0.031 Score=47.19 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.3
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++..+.|. |+|||||||++..++...
T Consensus 106 ~G~i~~i~-----G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFF-----GEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEE-----ESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEE-----CCCCCCHhHHHHHHHHHH
Confidence 45678888 999999999999998764
No 468
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.10 E-value=0.062 Score=45.14 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..+++. |+||+||||++..++...
T Consensus 66 ~~G~l~li~-----G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIA-----ARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEE-----CCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEE-----eCCCCCHHHHHHHHHHHH
Confidence 456678888 999999999999998654
No 469
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.033 Score=43.98 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.6
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+++++ |.+|+||||+...+..
T Consensus 36 ~~~kVvlv-----G~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLI-----GEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHh
Confidence 34679999 9999999999998864
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.07 E-value=0.032 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+|+++ |.+|+||||+...|..
T Consensus 25 ~~~ki~vv-----G~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIII-----GSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEE-----CSTTSSHHHHHHHHCC
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHhc
Confidence 35678999 9999999999998854
No 471
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.07 E-value=0.028 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.8
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 24 ~~~ki~vv-----G~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIV-----GDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEE-----ESTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 45689999 99999999999998764
No 472
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.06 E-value=0.06 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++-.+++. |+||+||||++..++...
T Consensus 201 ~~G~liiI~-----G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVA-----ARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEE-----CCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 356678888 999999999999987654
No 473
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.04 E-value=0.022 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.+.+. |+|||||||++-.++...
T Consensus 30 iteI~-----G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILA-----GPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEE-----ESSSSSHHHHHHHHHHHH
T ss_pred eEEEE-----CCCCCCHHHHHHHHHHHH
Confidence 57777 999999999987775543
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.036 Score=50.97 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=24.0
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
+.++-.+.|+ ||.||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~Lv-----GpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLV-----GTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEE-----CCCCChHHHHHHHHhcCC
Confidence 4567788999 999999999999998654
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.03 E-value=0.019 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=11.0
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+|+++ |.+|+||||+...|..
T Consensus 7 ~~~ki~v~-----G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLI-----GDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEE-----CCCCC-----------
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHh
Confidence 35679999 9999999999998864
No 476
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.01 E-value=0.023 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.-+.++++ |+.||||||+.+.|+-.
T Consensus 44 ~lp~iaIv-----G~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVI-----GDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECC-----CCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEE-----CCCCChHHHHHHHHhCC
Confidence 33457888 99999999999999754
No 477
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.99 E-value=0.033 Score=43.53 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
....+|+++ |.+|+||||+...|..
T Consensus 23 ~~~~ki~vv-----G~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLAL-----GDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEE-----SCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEE-----CcCCCCHHHHHHHHhc
Confidence 345789999 9999999999999875
No 478
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.98 E-value=0.026 Score=51.65 Aligned_cols=27 Identities=37% Similarity=0.601 Sum_probs=23.2
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++++ ||.||||||+.+.|+..+
T Consensus 367 ~~G~~~~iv-----G~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALV-----GRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEE-----ECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhhcc
Confidence 456678888 999999999999998766
No 479
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.91 E-value=0.071 Score=48.50 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
.+..++|. |++|+||||++..++.
T Consensus 146 ~~~~v~I~-----G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIH-----GMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEE-----CCTTSSHHHHHHHHHC
T ss_pred CCceEEEE-----cCCCCCHHHHHHHHHh
Confidence 45567777 9999999999998853
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.89 E-value=0.034 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++..+.|. |+|||||||++..++..
T Consensus 97 ~g~i~~i~-----G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFA-----GVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEE-----ESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEE-----CCCCCCHHHHHHHHHHH
Confidence 46677888 99999999999999864
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.87 E-value=0.033 Score=50.26 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHhhc-cCCCCeEEEEEeecccCCCCCChhHHHHHH
Q 025529 22 LRRMKC-ASKPDKRLILIIVWLAGPPGSGKGTQSPII 57 (251)
Q Consensus 22 ~~~~~~-~~~~~~~i~i~ii~i~G~~gsGKST~a~~L 57 (251)
++.+.. .-.++..++++ |++||||||+++.+
T Consensus 28 Ld~i~~G~i~~Ge~~~l~-----G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVS-----GTSGTGKTLFSIQF 59 (525)
T ss_dssp HHHHTTSSEETTSEEEEE-----ESTTSSHHHHHHHH
T ss_pred HHHhcCCCCCCCeEEEEE-----cCCCCCHHHHHHHH
Confidence 444443 33467789999 99999999999994
No 482
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.83 E-value=0.05 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=19.1
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+...+|. ||.||||||+..+|.-.
T Consensus 23 ~g~~~I~-----G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLII-----GQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEE-----CCTTSSHHHHHHHHHHH
T ss_pred CCeEEEE-----CCCCCCHHHHHHHHHHH
Confidence 4456777 99999999999888643
No 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.83 E-value=0.028 Score=51.59 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.0
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++++ ||.||||||+.+.|+..+
T Consensus 368 ~~G~~~~iv-----G~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALV-----GPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEE-----CCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCCHHHHHHHHhcCc
Confidence 456677888 999999999999998765
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.83 E-value=0.014 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.1
Q ss_pred EEEEEeecccCCCCCChhHHHHHHHHHhCCc
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIKDEYCLC 64 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La~~~~~~ 64 (251)
.++|. ||||+|||++|+.+++..+..
T Consensus 329 ~vLL~-----GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 329 HILII-----GDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CEEEE-----ESSCCTHHHHHHSSSTTCSCE
T ss_pred ceEEE-----CCCchHHHHHHHHHHHhCCCc
Confidence 68999 999999999999999987643
No 485
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.83 E-value=0.041 Score=42.35 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+++++ |.+|+||||+...|...
T Consensus 6 ~~kv~lv-----G~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLI-----GEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEE-----CSTTSSHHHHHHHHHHH
T ss_pred eEEEEEE-----CCCCCCHHHHHHHHhcC
Confidence 4678999 99999999999998754
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.81 E-value=0.026 Score=48.57 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.5
Q ss_pred EEEEEeecccCCCCCChhHHHHHHH
Q 025529 34 RLILIIVWLAGPPGSGKGTQSPIIK 58 (251)
Q Consensus 34 ~i~i~ii~i~G~~gsGKST~a~~La 58 (251)
..+|+ ||.||||||+...++
T Consensus 25 ~~~i~-----G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVE-----GPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEE-----CCTTSSHHHHHHHHH
T ss_pred eEEEE-----CCCCCCHHHHHHHHH
Confidence 56677 999999999999886
No 487
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.81 E-value=0.042 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.8
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
..+++++ |.||+||||+...|...
T Consensus 3 ~~kI~lv-----G~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALI-----GNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEE-----CCTTSSHHHHHHHHHCC
T ss_pred ceEEEEE-----CCCCCCHHHHHHHHHCC
Confidence 4578888 99999999999999763
No 488
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.77 E-value=0.059 Score=42.68 Aligned_cols=27 Identities=15% Similarity=-0.032 Sum_probs=22.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++...++. |++||||||.+-.++.++
T Consensus 26 ~~G~l~vit-----G~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVIC-----GSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEE-----CSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEE-----CCCCCcHHHHHHHHHHHH
Confidence 456667777 999999999998888877
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.77 E-value=0.034 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 33 KRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 33 ~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
++++++ |.|||||||+...|...
T Consensus 2 ~kI~lv-----G~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLI-----GNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEE-----ESTTSSHHHHHHHHHTT
T ss_pred CEEEEE-----CCCCCCHHHHHHHHHCC
Confidence 367888 99999999999999754
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.75 E-value=0.04 Score=42.67 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+|+++ |.+|+||||+...|...
T Consensus 28 ~~~ki~vv-----G~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLV-----GDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEE-----ECTTSSHHHHHHHHHHS
T ss_pred cceEEEEE-----CcCCCCHHHHHHHHhhC
Confidence 45789999 99999999999998653
No 491
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.72 E-value=0.031 Score=51.29 Aligned_cols=27 Identities=41% Similarity=0.759 Sum_probs=23.5
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
.++..++++ ||.||||||+.+.|+..+
T Consensus 379 ~~G~~~~iv-----G~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALV-----GPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEE-----CCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEE-----CCCCCcHHHHHHHHhcCc
Confidence 566788888 999999999999998766
No 492
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.65 E-value=0.043 Score=45.11 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
+..+|+++ |.+|+||||+...|...
T Consensus 2 ~~~~I~lv-----G~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLI-----GNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEE-----ECTTSSHHHHHHHHHTT
T ss_pred CccEEEEE-----CCCCCCHHHHHHHHhCC
Confidence 35678999 99999999999999764
No 493
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.63 E-value=0.042 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...+..+.|+ |+||+||||+.+.|..
T Consensus 17 v~~g~~vgiV-----G~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIV-----GMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEE-----ECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEE-----CCCCCCHHHHHHHHHC
Confidence 3567789999 9999999999999987
No 494
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.62 E-value=0.033 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.6
Q ss_pred CeEEEEEeecccCCCCCChhHHHHHHHH
Q 025529 32 DKRLILIIVWLAGPPGSGKGTQSPIIKD 59 (251)
Q Consensus 32 ~~~i~i~ii~i~G~~gsGKST~a~~La~ 59 (251)
...++++ |++|+||||+.+.|..
T Consensus 18 ~~~I~lv-----G~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVV-----GESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEE-----EETTSSHHHHHHHHHC
T ss_pred CEEEEEE-----CCCCCCHHHHHHHHhC
Confidence 4567888 9999999999999854
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.57 E-value=0.036 Score=43.56 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCCCeEEEEEeecccCCCCCChhHHHHH-HHHHh
Q 025529 29 SKPDKRLILIIVWLAGPPGSGKGTQSPI-IKDEY 61 (251)
Q Consensus 29 ~~~~~~i~i~ii~i~G~~gsGKST~a~~-La~~~ 61 (251)
+....+|+++ |.+|+||||+... +...+
T Consensus 12 ~~~~~ki~v~-----G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLV-----GDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEE-----ECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEE-----CCCCCCHHHHHHHHHcCCC
Confidence 3456789999 9999999999998 54443
No 496
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.54 E-value=0.04 Score=46.13 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=22.6
Q ss_pred cCCCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 28 ASKPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 28 ~~~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.|.++-.++++ |.||+||||+...|...
T Consensus 6 ~~~~~g~v~iv-----G~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIV-----GKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEE-----CCCCCcHHHHHHHHhCC
Confidence 35566778888 99999999999998653
No 497
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.49 E-value=0.022 Score=44.72 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 30 KPDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 30 ~~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...++++++ |.+|+||||+...|...
T Consensus 27 ~~~~~i~v~-----G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFA-----GRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEE-----ESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEE-----cCCCCCHHHHHHHHhCC
Confidence 356789999 99999999999988654
No 498
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.47 E-value=0.049 Score=45.52 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
...+++++ |.+|+||||+...|...
T Consensus 2 ~~~KI~lv-----G~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLM-----GRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEE-----CCTTSSHHHHHHHHHSC
T ss_pred CceEEEEE-----CCCCCCHHHHHHHHHhC
Confidence 45689999 99999999999998654
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.47 E-value=0.047 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHHh
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDEY 61 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~~ 61 (251)
++-.+.|+ |+.||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~-----G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIV-----GPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEE-----CCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEE-----CCCCCCHHHHHHHHhCCC
Confidence 34455555 999999999999998654
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.40 E-value=0.051 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCeEEEEEeecccCCCCCChhHHHHHHHHH
Q 025529 31 PDKRLILIIVWLAGPPGSGKGTQSPIIKDE 60 (251)
Q Consensus 31 ~~~~i~i~ii~i~G~~gsGKST~a~~La~~ 60 (251)
.+.+++++ |+||+||||+.+.|...
T Consensus 179 ~~~kvaiv-----G~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIV-----GRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEE-----CSTTSSHHHHHHHHHTS
T ss_pred cCceEEEE-----CCCCCCHHHHHHHHhCC
Confidence 35789999 99999999999999764
Done!