BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025530
MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT
ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL
LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLS
NVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA
DEFIKRREETE

High Scoring Gene Products

Symbol, full name Information P value
AT3G57810 protein from Arabidopsis thaliana 3.9e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025530
        (251 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2095748 - symbol:AT3G57810 "AT3G57810" species...   309  3.9e-35   2


>TAIR|locus:2095748 [details] [associations]
            symbol:AT3G57810 "AT3G57810" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0008234
            "cysteine-type peptidase activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=IDA] Pfam:PF02338 GO:GO:0009507
            EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR003323
            PROSITE:PS50802 EMBL:AL132977 EMBL:AY086909 EMBL:AK175291
            EMBL:AK175225 EMBL:AK176705 EMBL:BT026114 IPI:IPI00532222
            IPI:IPI00534320 PIR:T46003 RefSeq:NP_001078307.1 RefSeq:NP_567058.2
            RefSeq:NP_850716.1 UniGene:At.34796 ProteinModelPortal:Q8LBZ4
            SMR:Q8LBZ4 PaxDb:Q8LBZ4 PRIDE:Q8LBZ4 EnsemblPlants:AT3G57810.2
            EnsemblPlants:AT3G57810.3 GeneID:824950 KEGG:ath:AT3G57810
            TAIR:At3g57810 eggNOG:NOG324883 HOGENOM:HOG000006267
            InParanoid:Q682S6 OMA:ICYSPIT PhylomeDB:Q8LBZ4
            ProtClustDB:CLSN2680442 Genevestigator:Q8LBZ4 Uniprot:Q8LBZ4
        Length = 317

 Score = 309 (113.8 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 62/109 (56%), Positives = 76/109 (69%)

Query:   145 ASAGLICGLLVCYSSSKXXXXXXXXXXXXXXXXX--LSNVKYSHGKKVYTDYSVIGIPGD 202
             A  G+I  LLVCYSS+                     S+ K+ +GK+VYTDYS+IGIPGD
Sbjct:   117 AYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGD 176

Query:   203 GRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE 251
             GRCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETE
Sbjct:   177 GRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETE 225

 Score = 87 (35.7 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query:     1 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
             MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct:     2 MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query:    61 ISS 63
             +S+
Sbjct:    58 VSN 60


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       234   0.00087  113 3  11 22  0.38    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  175 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.82u 0.10s 17.92t   Elapsed:  00:00:01
  Total cpu time:  17.82u 0.10s 17.92t   Elapsed:  00:00:01
  Start:  Fri May 10 13:16:04 2013   End:  Fri May 10 13:16:05 2013

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