BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025530
         (251 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
 pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
           Cadherins
          Length = 553

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 17/78 (21%)

Query: 80  GLTKPR-CNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPI 138
            +T+P  C LR LT            RH E  +A  S+++   +P+      +KL   P 
Sbjct: 327 DITEPAVCALRHLT-----------SRHPEAEMAQNSVRLNYGIPA-----IVKLLNQPN 370

Query: 139 DWPKGCASAGLICGLLVC 156
            WP   A+ GLI  L +C
Sbjct: 371 QWPLVKATIGLIRNLALC 388


>pdb|2OYO|A Chain A, Crystal Structure Of Uncharacterized Peroxidase-Related
           Protein (Yp_604910.1) From Deinococcus Geothermalis Dsm
           11300 At 1.51 A Resolution
 pdb|2OYO|B Chain B, Crystal Structure Of Uncharacterized Peroxidase-Related
           Protein (Yp_604910.1) From Deinococcus Geothermalis Dsm
           11300 At 1.51 A Resolution
          Length = 196

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 197 IGIPGDGRCLFRAVAHGACLRA--GKP--APSVSIQRELAD 233
           + + G  RCL+ AV+HGA LR   G P  A +V++    AD
Sbjct: 83  VVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHAD 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,565,989
Number of Sequences: 62578
Number of extensions: 232991
Number of successful extensions: 466
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)