BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025530
         (251 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana
           GN=At3g57810 PE=2 SV=1
          Length = 317

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 141/253 (55%), Gaps = 31/253 (12%)

Query: 1   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 60
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 61  ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL 120
           +S+      +P  ++    GL       RP           + K  +E+S       M+ 
Sbjct: 58  VSN------RP--SSWHDKGLFGSVLINRPTV---------APKEKLEVSFLSPEANMKC 100

Query: 121 LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYD 178
                    K++ N   +      A  G+I  LLVCYSS+   A+A+++ +K+     + 
Sbjct: 101 --------SKIESNMRNLYCYSRFAYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHH 152

Query: 179 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAK 238
            S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP   +QRELAD+LR +
Sbjct: 153 SSDGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTR 212

Query: 239 VADEFIKRREETE 251
           VADEFI+RR+ETE
Sbjct: 213 VADEFIQRRQETE 225


>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
           GN=L96 PE=3 SV=1
          Length = 867

 Score = 35.0 bits (79), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 169 EKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQ 228
           E + G  D DL  +    G      Y VI + GDG CLFRAV  G  LR  +   ++   
Sbjct: 587 EYKGGNADRDLEILARRRG------YKVIPVKGDGNCLFRAV--GKSLRLNQ---NIKYS 635

Query: 229 RELADDLRAKVADEFIKRREETE 251
            E   DLRA+V       +E  E
Sbjct: 636 HE---DLRAQVVTYLTSHKEFLE 655


>sp|Q00106|VG65_ICHVA Uncharacterized protein ORF65 OS=Ictalurid herpesvirus 1 (strain
            Auburn) GN=ORF65 PE=4 SV=1
          Length = 1434

 Score = 34.7 bits (78), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 13/75 (17%)

Query: 171  EDGEEDY--DLSNVKYSHG-KKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSI 227
            E  EED    L N  YS G K+VY       IPGDG CL+  +   A         ++  
Sbjct: 1265 ESLEEDQFTRLENTLYSMGLKRVY-------IPGDGNCLYNTLRFIA---GADGESAIDF 1314

Query: 228  QRELADDLRAKVADE 242
            ++EL DD+R  V ++
Sbjct: 1315 KKELLDDIRKYVRNQ 1329


>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2
           SV=1
          Length = 294

 Score = 31.2 bits (69), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 155 VCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGKKVYT-----DYSVIGIPGDGR 204
           V  +  +   +AA EKE  +     E  +LS  ++   +K+       +  +  IP DG 
Sbjct: 101 VSKAQKRREKKAAQEKERDDRIAEAEIANLSGARHLESQKLAQILAERELQIRQIPSDGH 160

Query: 205 CLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE 249
           C++RA+ H    +  +   S+++      +LR++ AD   KR E+
Sbjct: 161 CMYRAIEH----QLNEQGNSLTVA-----NLRSQTADYMQKRAED 196


>sp|Q8PFQ5|SPEA_XANAC Biosynthetic arginine decarboxylase OS=Xanthomonas axonopodis pv.
           citri (strain 306) GN=speA PE=3 SV=2
          Length = 628

 Score = 30.8 bits (68), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 47  SGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRC 86
            G   ++Y  I+  + S + N++QP  + C   GLT PR 
Sbjct: 290 EGTRSRSYCSINYGLHSYASNIVQPLASACEEHGLTPPRI 329


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,067,591
Number of Sequences: 539616
Number of extensions: 3828300
Number of successful extensions: 9204
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9200
Number of HSP's gapped (non-prelim): 6
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)