Query 025530
Match_columns 251
No_of_seqs 61 out of 63
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phx_A RNA-directed RNA polyme 98.9 6.9E-10 2.3E-14 93.2 3.5 59 186-249 23-81 (185)
2 3phu_A RNA-directed RNA polyme 98.8 1.8E-09 6E-14 93.6 2.9 59 186-249 23-81 (219)
3 3by4_A OTU1, ubiquitin thioest 98.7 5.8E-09 2E-13 88.9 4.7 46 193-250 19-64 (212)
4 3pfy_A OTU domain-containing p 98.7 6.2E-09 2.1E-13 88.0 3.8 50 191-251 56-105 (185)
5 1tff_A Ubiquitin thiolesterase 96.1 0.0036 1.2E-07 54.0 3.8 27 190-218 38-64 (234)
6 4ddg_A Ubiquitin-conjugating e 95.4 0.012 4.2E-07 53.7 4.6 26 190-217 206-231 (399)
7 2zfy_A Ubiquitin thioesterase 95.2 0.011 3.8E-07 50.7 3.3 27 190-218 41-67 (234)
8 4dhi_B Ubiquitin thioesterase 94.0 0.023 7.7E-07 51.3 2.3 26 189-216 74-99 (284)
9 3dkb_A Tumor necrosis factor, 39.3 7.8 0.00027 36.8 0.6 23 193-215 111-133 (390)
10 1wh2_A Hypothetical protein AT 20.7 12 0.00041 27.7 -1.3 40 65-104 35-77 (78)
11 1nxh_A MTH396 protein; hypothe 20.4 62 0.0021 26.5 2.7 19 229-247 89-107 (126)
No 1
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=98.89 E-value=6.9e-10 Score=93.20 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=46.0
Q ss_pred CCceeEEeeeEeeecCCcchhhHHHHhHHhHHhCCCCCChhhhhhhHHHHHHHHHHHHhhcccc
Q 025530 186 HGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE 249 (251)
Q Consensus 186 ~g~k~~~~ysV~gI~GDGRCLFRSvAhGa~~~~G~~~p~~~eqrelADeLR~~VaDeL~kRReE 249 (251)
++..+.++|.|.+|+|||+||||||++.+... .++ .+++..+++||.++++.+.+++++
T Consensus 23 p~~~~~~~~~v~rv~gDGnCLFrAva~qL~~~----~~~-~~~~~~~~~LR~~~~~yi~~~~~~ 81 (185)
T 3phx_A 23 PRFNISDYFEIVRQPGDGNCFYHSIAELTMPN----KTD-HSYHYIKRLTESAARKYYQEEPEA 81 (185)
T ss_dssp CCCBHHHHEEEECCCSSTTHHHHHHHHHHSTT----CCT-TTHHHHHHHHHHHHHHHGGGCTTH
T ss_pred CCcccccCeEEEccCCCCchHHHHHHHHHhCC----Ccc-chhhhHHHHHHHHHHHHHHhChHh
Confidence 44555677999999999999999999976431 222 223567999999999999998875
No 2
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=98.79 E-value=1.8e-09 Score=93.60 Aligned_cols=59 Identities=14% Similarity=0.276 Sum_probs=45.6
Q ss_pred CCceeEEeeeEeeecCCcchhhHHHHhHHhHHhCCCCCChhhhhhhHHHHHHHHHHHHhhcccc
Q 025530 186 HGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE 249 (251)
Q Consensus 186 ~g~k~~~~ysV~gI~GDGRCLFRSvAhGa~~~~G~~~p~~~eqrelADeLR~~VaDeL~kRReE 249 (251)
+...+.++|.|.+|+|||+||||||++.+.. ++ ++ ..++..+++||.++++.+.+++++
T Consensus 23 p~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~--~~--~~-~~~~~~h~~LR~~va~yi~~n~d~ 81 (219)
T 3phu_A 23 PRFNISDYFEIVRQPGDGNCFYHSIAELTMP--NK--TD-HSYHYIKRLTESAARKYYQEEPEA 81 (219)
T ss_dssp CCCBHHHHEEEECCCCSSCHHHHHHHHHHCT--TC--CT-TTHHHHHHHHHHHHHHHGGGCHHH
T ss_pred CCcccccceEEEccCCCCchHHHHHHHHHhC--CC--cc-chhhhHHHHHHHHHHHHHHhChhh
Confidence 4455556799999999999999999997733 11 21 223667999999999999988865
No 3
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=98.75 E-value=5.8e-09 Score=88.92 Aligned_cols=46 Identities=33% Similarity=0.488 Sum_probs=39.2
Q ss_pred eeeEeeecCCcchhhHHHHhHHhHHhCCCCCChhhhhhhHHHHHHHHHHHHhhccccc
Q 025530 193 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET 250 (251)
Q Consensus 193 ~ysV~gI~GDGRCLFRSvAhGa~~~~G~~~p~~~eqrelADeLR~~VaDeL~kRReEt 250 (251)
.+.+..|||||+||||||++++ . . .+.+.+||..|++.|.++|++.
T Consensus 19 ~l~~~~i~~DGnCLFrAva~qL-~---~--------~~~~~~lR~~vv~yi~~n~d~f 64 (212)
T 3by4_A 19 VLSVHPVLDDNSCLFHAIAYGI-F---K--------QDSVRDLREMVSKEVLNNPVKF 64 (212)
T ss_dssp EEEEECCCCSTTHHHHHHHHHH-H---S--------SCCSHHHHHHHHHHHHHCTTTT
T ss_pred CeEEEEeCCCCchHHHHHHHHh-C---C--------chHHHHHHHHHHHHHHHCHHHH
Confidence 3678899999999999999999 2 1 1248899999999999999875
No 4
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=98.71 E-value=6.2e-09 Score=87.96 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=42.8
Q ss_pred EEeeeEeeecCCcchhhHHHHhHHhHHhCCCCCChhhhhhhHHHHHHHHHHHHhhcccccC
Q 025530 191 YTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE 251 (251)
Q Consensus 191 ~~~ysV~gI~GDGRCLFRSvAhGa~~~~G~~~p~~~eqrelADeLR~~VaDeL~kRReEtE 251 (251)
...+.+..|+|||+||||||++++.. + .+.+.+||.+|++.|.++|++.+
T Consensus 56 ~~gL~~~~I~~DGnCLFrAia~qL~g-------~----~~~h~~LR~~vv~yi~~n~d~f~ 105 (185)
T 3pfy_A 56 KKGFIIKQMKEDGACLFRAVADQVYG-------D----QDMHEVVRKHCMDYLMKNADYFS 105 (185)
T ss_dssp HHCCEEECCCCSTTHHHHHHHHHHHS-------C----GGGHHHHHHHHHHHHHHTHHHHT
T ss_pred HCCcEEEeeCCCCChHHHHHHHHHhC-------C----chHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999973 1 23689999999999999998753
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=96.14 E-value=0.0036 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEeeeEeeecCCcchhhHHHHhHHhHHh
Q 025530 190 VYTDYSVIGIPGDGRCLFRAVAHGACLRA 218 (251)
Q Consensus 190 ~~~~ysV~gI~GDGRCLFRSvAhGa~~~~ 218 (251)
++..| .+|+|||+|.|||++-|.--.-
T Consensus 38 ~y~~~--R~vRgDGNCFYRAf~f~ylE~l 64 (234)
T 1tff_A 38 RFTAI--RKTKGDRNCFYRALGYSYLESL 64 (234)
T ss_dssp HEEEE--ECBCCSSCHHHHHHHHHHHHHH
T ss_pred hhhhe--eecCCCccHHHHHHHHHHHHHH
Confidence 35444 4999999999999998876543
No 6
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=95.44 E-value=0.012 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEeeeEeeecCCcchhhHHHHhHHhHH
Q 025530 190 VYTDYSVIGIPGDGRCLFRAVAHGACLR 217 (251)
Q Consensus 190 ~~~~ysV~gI~GDGRCLFRSvAhGa~~~ 217 (251)
+|.+|| +|.|||+|.|||++.|.--.
T Consensus 206 ~y~~~R--~vrgDGNCFYRAf~f~ylE~ 231 (399)
T 4ddg_A 206 KYSYIR--KTRPDGNSFYRAFGFSHLEA 231 (399)
T ss_dssp HCSEEE--CBCCSSCHHHHHHHHHHHHH
T ss_pred hcCeee--eecCCCchHHHHHHHHHHHH
Confidence 456555 89999999999999987663
No 7
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=95.20 E-value=0.011 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEeeeEeeecCCcchhhHHHHhHHhHHh
Q 025530 190 VYTDYSVIGIPGDGRCLFRAVAHGACLRA 218 (251)
Q Consensus 190 ~~~~ysV~gI~GDGRCLFRSvAhGa~~~~ 218 (251)
+|..|+ +|.|||+|.|||++-+.--.-
T Consensus 41 ~y~~~R--~vRgDGNCFyRaf~f~ylE~l 67 (234)
T 2zfy_A 41 KYSYIR--KTRPDGNCFYRAFGFSHLEAL 67 (234)
T ss_dssp TCCEEE--CBCCSSCHHHHHHHHHHHHHH
T ss_pred hcccee--eccCCccHHHHHHHHHHHHHH
Confidence 455555 899999999999999886533
No 8
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=93.97 E-value=0.023 Score=51.34 Aligned_cols=26 Identities=38% Similarity=0.737 Sum_probs=22.5
Q ss_pred eeEEeeeEeeecCCcchhhHHHHhHHhH
Q 025530 189 KVYTDYSVIGIPGDGRCLFRAVAHGACL 216 (251)
Q Consensus 189 k~~~~ysV~gI~GDGRCLFRSvAhGa~~ 216 (251)
++|.+|| ++.|||+|.|||++-|..-
T Consensus 74 ~~Y~~~R--~~RGDGNCFyRAf~F~ylE 99 (284)
T 4dhi_B 74 EVYGEIR--YIRGDGNCFYRAILVGLIE 99 (284)
T ss_dssp TTEEEEE--CBCCSTTHHHHHHHHHHHH
T ss_pred Hhcccee--eecCCCchhHHHHHHHHHH
Confidence 4688887 8999999999999999865
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=39.30 E-value=7.8 Score=36.83 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=18.8
Q ss_pred eeeEeeecCCcchhhHHHHhHHh
Q 025530 193 DYSVIGIPGDGRCLFRAVAHGAC 215 (251)
Q Consensus 193 ~ysV~gI~GDGRCLFRSvAhGa~ 215 (251)
..-.....|||+||.-|+..+|-
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamW 133 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMW 133 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHH
T ss_pred ceEEEEecCCCchHHHHHhHHhc
Confidence 34456789999999999999865
No 10
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=20.66 E-value=12 Score=27.69 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=32.1
Q ss_pred CcccccccccccccccccCCCC---CCCCceeeeeecccCccc
Q 025530 65 SLNVLQPFQATCFSPGLTKPRC---NLRPLTIRSFIGSRGSQK 104 (251)
Q Consensus 65 s~~~~q~~~~~~~~S~l~k~~~---~~~~~tvk~~~~s~G~~k 104 (251)
+..|.+|++.|.|...|--+|. ..+++++..+++.+||.+
T Consensus 35 ~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~L~dll~~~g~~~ 77 (78)
T 1wh2_A 35 LTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVLRLSGPSS 77 (78)
T ss_dssp HHHHHHHHTTTSSCSCCEEEETTSCTTSCEEHHHHHHHSSCSC
T ss_pred HHHHHHHHHcCCCCCCceEEEeCCCCcceehHHHHHHHHCCCC
Confidence 4457889999999998876555 468888888888888875
No 11
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=20.41 E-value=62 Score=26.55 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHhhcc
Q 025530 229 RELADDLRAKVADEFIKRR 247 (251)
Q Consensus 229 relADeLR~~VaDeL~kRR 247 (251)
+++||.+|.+|++++...+
T Consensus 89 k~dAd~ir~kv~~~i~~~k 107 (126)
T 1nxh_A 89 VDDAEALKDEITELVLAGR 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHcCC
Confidence 4579999999999887654
Done!