BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025531
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 331 bits (848), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/251 (65%), Positives = 197/251 (78%), Gaps = 3/251 (1%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
+ G + +H SLV A+K VDVVISTVG + QV II AIKE G V RFFPSEFGNDVD
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
H AVEPAKSV+ +VKA++RRA+EAEGIPYTYV S CF GYFL +L Q G APPRDKVV
Sbjct: 121 VH-AVEPAKSVF-EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVV 178
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
ILGDGN + V+ KE+DI T+TIKAVDDPRTLNK LY++ P N S N+LV+LWE+KI KT
Sbjct: 179 ILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKT 238
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
LE+ YV EE++LK I + P N+ ++I HS+F+ G QTNFEI P+ GVEASQL+PDVKY
Sbjct: 239 LEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPDVKY 297
Query: 241 TTVDEYLNQFV 251
TTVDEYL+ FV
Sbjct: 298 TTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 191/251 (76%), Gaps = 3/251 (1%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++GD+ +HE+LV AIKQVD+VI G L+ DQVKII AIKEAGNV +FFPSEFG DVDR
Sbjct: 60 LEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR 119
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
H AVEP + V+ + KA IRR +EAEG+PYTY+ + F GYFL NL Q A PPRDKVV
Sbjct: 120 -HDAVEPVRQVFEE-KASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVV 177
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
ILGDGN K Y E D+ T+TI+A +DP TLNK ++I+ P N + N++++LWE+KIGKT
Sbjct: 178 ILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKT 237
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
LE+ YVSEEQ+LK+IQE++ P N +L++YHS + G +EI+P+ +EAS+ +PDV Y
Sbjct: 238 LEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKG-DAVYEIDPAKDIEASEAYPDVTY 296
Query: 241 TTVDEYLNQFV 251
TT DEYLNQFV
Sbjct: 297 TTADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 170/250 (68%), Gaps = 7/250 (2%)
Query: 7 NHESLVNAIKQVDVVISTVGHALLA----DQVKIIAAIKEAGNVTRFFPSEFGNDVDRAH 62
+H+ LV+A+KQVDVVIS + +L+ +Q+K++ AIKEAGN+ RF PSEFG D D
Sbjct: 66 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME 125
Query: 63 GAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQ-PGAAAPPRDKVVI 121
A++P + D K ++RRA+EA IPYTYV S F GYF +L Q G PPRDKV+I
Sbjct: 126 HALQPGSITFID-KRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLI 184
Query: 122 LGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTL 181
GDGN K ++ EDD+ TYTIK++DDP+TLNK +YI+PP NI S +++ +WER + L
Sbjct: 185 YGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNL 244
Query: 182 EREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYT 241
++ Y+S + L ++++ + + ++ + +F G NFEI P+ +EA++L+P+VKY
Sbjct: 245 DKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYPEVKYV 303
Query: 242 TVDEYLNQFV 251
T+D YL ++V
Sbjct: 304 TMDSYLERYV 313
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 162/251 (64%), Gaps = 3/251 (1%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++G++ HE +V+ +KQVD+VIS + +++ Q+ II AIK AGN+ RF PS+FG + DR
Sbjct: 61 IEGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDR 120
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
+ P +SV + K IRRA+EA +PYTYV + CF YF+ LL P D +V
Sbjct: 121 IK-PLPPFESVL-EKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIV 178
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
I G G K V N E+DIA YTIK DPR N+ + +PP NI S N+L+SLWE K G +
Sbjct: 179 IYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLS 238
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
++ ++ +EQL++ QE PQN+ +SI HS+F+ G ++E+ +EAS L+P++++
Sbjct: 239 FKKVHMPDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKD-DIEASNLYPELEF 297
Query: 241 TTVDEYLNQFV 251
T++D L+ F+
Sbjct: 298 TSIDGLLDLFI 308
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 144/235 (61%), Gaps = 2/235 (0%)
Query: 17 QVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGAVEPAKSVYYDVK 76
++D+V+STVG + DQ+ ++ A+K G + RF PSEFG+DV+RA VEP ++Y + K
Sbjct: 83 EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRAD-PVEPGLNMYRE-K 140
Query: 77 ARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDD 136
R+R+ VE GIP+TY+ + N + P PP D I GDGN KA + D
Sbjct: 141 RRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTD 200
Query: 137 IATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVSEEQLLKNIQ 196
I +T+K VDD RTLNK+++ +P N + N+L S+WE+KIG+TL R V+E+ LL
Sbjct: 201 IGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAG 260
Query: 197 EAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVDEYLNQFV 251
E PQ+V+ + H +F+ G Q NF I+ VE + L+P+ + TV+E +++
Sbjct: 261 ENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVEECFGEYI 315
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 157/251 (62%), Gaps = 6/251 (2%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++G++ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR
Sbjct: 59 VKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDR 118
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
+ P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++
Sbjct: 119 INAL--PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEIT 173
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
+ G G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK
Sbjct: 174 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 233
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
++ +V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+
Sbjct: 234 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKF 292
Query: 241 TTVDEYLNQFV 251
TT+DE L+ FV
Sbjct: 293 TTIDELLDIFV 303
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 157/251 (62%), Gaps = 6/251 (2%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++G++ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR
Sbjct: 63 VKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDR 122
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
+ P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++
Sbjct: 123 INAL--PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEIT 177
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
+ G G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
++ +V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKF 296
Query: 241 TTVDEYLNQFV 251
TT+DE L+ FV
Sbjct: 297 TTIDELLDIFV 307
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 157/251 (62%), Gaps = 6/251 (2%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++G++ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR
Sbjct: 63 VKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDR 122
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
+ P + + IRRA+E IPYTYV + CF YF+ LL+P P+D++
Sbjct: 123 INAL--PPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEIT 177
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
+ G G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
++ +V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKF 296
Query: 241 TTVDEYLNQFV 251
TT+DE L+ FV
Sbjct: 297 TTIDELLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 60
++G++ HE LV +K+VDVVIS + DQ KI+ AIK AGN+ RF PS+FG + DR
Sbjct: 63 VKGELDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDR 122
Query: 61 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 120
+ P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++
Sbjct: 123 INAL--PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEIT 177
Query: 121 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 180
+ G G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 181 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 240
++ +V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKF 296
Query: 241 TTVDEYLNQFV 251
TT+DE L+ FV
Sbjct: 297 TTIDELLDIFV 307
>pdb|1OOP|A Chain A, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 283
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 91 TYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAV----YNKEDDIATYTIKAVD 146
T V SY + P++ +APPR V +G GN ++ + + D TY I ++
Sbjct: 154 TKVNSYSWQTSTNPSVFWTEGSAPPRMSVPFIGIGNAYSMFYDGWARFDKQGTYGISTLN 213
Query: 147 DPRTL 151
+ TL
Sbjct: 214 NMGTL 218
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 1 MQGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRF-FPSEFGNDVD 59
+ GDVLNH +L A + D+V + + L Q + A +A +V R F G +
Sbjct: 72 IXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYDE 131
Query: 60 RAHGAVEPAKSVYYDVKARIRR---AVEAEGIPYTYVE 94
VE +V + RR A+EA G+ YT +
Sbjct: 132 VPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILR 169
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 82 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 141
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 142 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVS---EEQLLKNIQEA 198
+ + NL P ++F++L + GK + + VS E+ L N
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVP 241
Query: 199 APPQNVILSIYHSV 212
P + +IY ++
Sbjct: 242 EPFTEITAAIYDAI 255
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 82 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 141
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 142 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVS---EEQLLKNIQEA 198
+ + NL P ++F++L + GK + + VS E+ L N
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVP 241
Query: 199 APPQNVILSIYHSV 212
P + +IY ++
Sbjct: 242 EPFAEITAAIYDAI 255
>pdb|4E4S|A Chain A, Crystal Structure Of Pika Gitrl
pdb|4E4S|B Chain B, Crystal Structure Of Pika Gitrl
pdb|4E4S|C Chain C, Crystal Structure Of Pika Gitrl
pdb|4E4S|D Chain D, Crystal Structure Of Pika Gitrl
pdb|4E4S|E Chain E, Crystal Structure Of Pika Gitrl
pdb|4E4S|F Chain F, Crystal Structure Of Pika Gitrl
Length = 125
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 120 VILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGK 179
I G P Y K D +TL + IQ GNIY FN G
Sbjct: 44 AIYGRVTPNPTYKGFAPFEVQLCKNKDAIQTLTDSSKIQNLGNIYEFN---------AGD 94
Query: 180 TLEREYVSEEQLLK 193
T+E + S++Q+LK
Sbjct: 95 TIELRFNSDDQVLK 108
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 69 KSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYF-LPNLLQPG--------AAAPPRDK- 118
+ V VKAR+R A G+ + ++ DG+F L L Q G AP + +
Sbjct: 259 RDVAKQVKARLREA----GLAPVPMITFAKDGHFALEELAQAGYEVVGLDWTVAPKKARE 314
Query: 119 -----VVILGDGNPKAVYNKEDDIATYTIKAVDD 147
V + G+ +P A+Y E++I + +DD
Sbjct: 315 CVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDD 348
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 151 LNKNLYIQPPGNIYSFND---LVSLWERKIGKTLERE 184
LN+ L PPG+++S ++ LV+L E K+ L++E
Sbjct: 30 LNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE 66
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 82 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 141
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 142 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVSEEQ 190
+ + NL P ++F++L + GK + + VS E+
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEE 230
>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|B Chain B, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|C Chain C, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|D Chain D, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|E Chain E, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|F Chain F, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|G Chain G, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
Length = 286
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 69 KSVYYDVKARIRRAVEAEGIPYTY 92
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|2VV5|A Chain A, The Open Structure Of Mscs
pdb|2VV5|B Chain B, The Open Structure Of Mscs
pdb|2VV5|C Chain C, The Open Structure Of Mscs
pdb|2VV5|D Chain D, The Open Structure Of Mscs
pdb|2VV5|E Chain E, The Open Structure Of Mscs
pdb|2VV5|F Chain F, The Open Structure Of Mscs
pdb|2VV5|G Chain G, The Open Structure Of Mscs
Length = 286
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 69 KSVYYDVKARIRRAVEAEGIPYTY 92
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|B Chain B, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|C Chain C, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|D Chain D, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|E Chain E, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|F Chain F, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|G Chain G, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
Length = 286
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 69 KSVYYDVKARIRRAVEAEGIPYTY 92
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|B Chain B, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|C Chain C, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|D Chain D, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|E Chain E, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|F Chain F, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|G Chain G, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|4HWA|A Chain A, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|B Chain B, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|C Chain C, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|D Chain D, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|E Chain E, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|F Chain F, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|G Chain G, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
Length = 306
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 69 KSVYYDVKARIRRAVEAEGIPYTY 92
++VY+DV RI+R +A GI + Y
Sbjct: 267 QNVYWDVLERIKREFDAAGISFPY 290
>pdb|2R30|A Chain A, Crystal Structure Of Human Gitrl Mutant
Length = 130
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 120 VILGDGNPKAVYNKEDDIATYTI---KAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERK 176
+I G P A YN D+A + + K D +TL IQ G Y E
Sbjct: 49 LIYGQVAPNAAYN---DVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTY---------ELH 96
Query: 177 IGKTLEREYVSEEQLLKN 194
+G T++ + SE Q+LKN
Sbjct: 97 VGDTIDLIFNSEHQVLKN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,391
Number of Sequences: 62578
Number of extensions: 337344
Number of successful extensions: 890
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 25
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)