BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025532
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 71 EPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYR-LPD 129
EPY G +FESE AA AFYN+YA R+GF RVS RSRRDG+ I R VC KEG+R + +
Sbjct: 72 EPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNE 131
Query: 130 KREK---IVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTP 174
KR K I R R TRVGC+A + V+ +SG+W+V+ FVK+H H L P
Sbjct: 132 KRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7
PE=2 SV=1
Length = 764
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 68 QADEPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRL 127
+A EPY G +F S A FY AYA VGF +R+ +L RS+ DGS R VC+KEG++
Sbjct: 186 KATEPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQH 245
Query: 128 PDKREKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPGK 176
P +R+GC A + +++ +SG W+V + K+H H L PGK
Sbjct: 246 P------------SRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEPGK 282
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 19/128 (14%)
Query: 52 LALETIPEGI----PSVASVQAD---EPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKL 104
+ ++T P G+ +A + D EPYVG +F++ A +YN+YATR GF +R +L
Sbjct: 1 MVVKTYPLGMVGTNNGIAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQL 60
Query: 105 SRSRRDGSAIGRALVCNKEGYRLPDKREKIVRQRAETRVGCRAMILVRKVNSGQWVVTKF 164
RSR DG+ R VC+KEG++L +R GC A I V++ ++G+WV+ +
Sbjct: 61 YRSRTDGTVSSRRFVCSKEGFQL------------NSRTGCPAFIRVQRRDTGKWVLDQI 108
Query: 165 VKEHTHPL 172
KEH H L
Sbjct: 109 QKEHNHDL 116
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12
PE=2 SV=1
Length = 788
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 12/102 (11%)
Query: 71 EPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDK 130
EPYVG +F++ A FYNAYA R GF +R +L RSR DG+ R VC+KEG++L
Sbjct: 42 EPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQL--- 98
Query: 131 REKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPL 172
+R GC A I V++ ++G+WV+ + KEH H L
Sbjct: 99 ---------NSRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 66 SVQADEPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGY 125
+V EPY G +F S A FY AYA VGF +R+ +L RS+ DGS R VC++EG+
Sbjct: 205 AVTGTEPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGF 264
Query: 126 RLPDKREKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPGK 176
+ P +R+GC A + +++ +SG W+V + K+H H L PGK
Sbjct: 265 QHP------------SRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEPGK 303
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 23 RVGNEDEIYRTS--VEVTLHQDQDNKVDPDSLALETIPEGIPSVASVQADEPYVGQQFES 80
R+G E + + ++V Q+++ K + +++ G+ + D P VG +FES
Sbjct: 34 RIGEEALVCSSEHEIDVGFCQNEERKSEEETMGGFDEQSGLLVDERKEFDAPAVGMEFES 93
Query: 81 EAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKREKIVRQRAE 140
A+ +YN YA+ VGF +RV RR G L C+ +G++ + + R R E
Sbjct: 94 YDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFK---RINDVNRVRKE 150
Query: 141 TRVGCRAMILVRKVNSGQWVVTKFVKEHTHPL 172
TR GC AMI +R+V+S +W V + +H H L
Sbjct: 151 TRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL 182
>sp|Q5UBY2|FRS1_ARATH Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1
PE=1 SV=1
Length = 687
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 75 GQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNK------------ 122
G++FES+ A FY YA VGF + RSR G I VC +
Sbjct: 24 GREFESKEEAFEFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKEDIDTGL 83
Query: 123 --EGYRLPDKREKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPGKGRKD 180
+G+ +P R++ R+ ++ C+A + V++ G+WVV VKEH H + G+
Sbjct: 84 GTDGFNIPQARKRGRINRSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHNHEIFTGQA--- 140
Query: 181 CIYDQYPNEHDKIRELSQQLALEKKRAA 208
D +RELS + LEK A
Sbjct: 141 ----------DSLRELSGRRKLEKLNGA 158
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
PE=2 SV=2
Length = 725
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 67 VQADEPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYR 126
+ A P G +FES A++FYN+YA +GF IRV R G L CN +G++
Sbjct: 90 LMAPPPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFK 149
Query: 127 LPDKREKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPGKG 177
L +R ETR GC+AMI +R ++ +W V + +H H P +
Sbjct: 150 LLKDAHS---RRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRA 197
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
PE=2 SV=1
Length = 807
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 75 GQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKREK- 133
G FES+ AA+ FY YA VGF I + RS+R G I + C++ G KREK
Sbjct: 41 GMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFG----TKREKA 96
Query: 134 -IVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTP 174
+ R+ + GC+A + +++ +WV+ FVKEH H + P
Sbjct: 97 TAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 138
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 21 GDRVGNEDEIYRTSVEVTLHQDQD---NKVDPDSLALET---IPEGIPSVASVQADE--- 71
GD +DE ++ LH ++D K++ S+ + T + G+P+ V+ E
Sbjct: 10 GDLCKGDDE--DRGLDNVLHNEEDMDIGKIEDVSVEVNTDDSVGMGVPTGELVEYTEGMN 67
Query: 72 --PYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEG----- 124
P G +FES A++FY Y+ +GF + RS+ I C++ G
Sbjct: 68 LEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREY 127
Query: 125 ---YRLPDKR------EKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPG 175
+ P R E + +R + C+A + V++ G+WV+ FV+EH H L P
Sbjct: 128 DKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLPA 187
Query: 176 KGRKDCIYDQYPNEHDKIRELSQQLALEKKRAANYKRHLELIVE 219
+ + Y + E ++L+ +++++ L VE
Sbjct: 188 QAVSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEKGRTLSVE 231
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 77 QFESEAAAHAFYNAYATRVGFVIRVSKLS--RSRRDGSAIGRALVCNKEGYRLPDKREKI 134
+FE+ A+ FY YA VGF +KLS RSR I C + G + + +
Sbjct: 2 EFETHEDAYLFYKDYAKSVGF--GTAKLSSRRSRASKEFIDAKFSCIRYGSK--QQSDDA 57
Query: 135 VRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTP 174
+ RA ++GC+A + V++ G+W V FVKEH H L P
Sbjct: 58 INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
PE=2 SV=1
Length = 680
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 28/137 (20%)
Query: 48 DPDSLALETIPEGIPSVASVQADEPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRS 107
D ++L+LE + IP Y+GQ F + A+ FY+ +A R GF IR R
Sbjct: 34 DDNNLSLEAVHNAIP----------YLGQIFLTHDTAYEFYSTFAKRCGFSIR-----RH 78
Query: 108 RRDGS-AIGRAL-----VCNKEGYRLPDK---REKIVRQRAETRVGCRAMILVRKVN--- 155
R +G +G+ L VC++ G P K K R R +R GC+A + + K+
Sbjct: 79 RTEGKDGVGKGLTRRYFVCHRAG-NTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTELG 137
Query: 156 SGQWVVTKFVKEHTHPL 172
S +W VT F H H L
Sbjct: 138 STEWRVTGFANHHNHEL 154
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 71 EPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDK 130
EP G F++ AA+ FY YA +GF + RS++ I C++ G P+
Sbjct: 50 EPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVT-PES 108
Query: 131 REKIVRQRAET--RVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTPG 175
R T + C+A + V++ G+W++ +FVK+H H L P
Sbjct: 109 ESSGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPA 155
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 71 EPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDK 130
EP VG +F SE A +FY+ Y+ ++GF SKL R DGS R VC+ R +
Sbjct: 48 EPCVGMEFNSEKEAKSFYDEYSRQLGFT---SKL-LPRTDGSVSVREFVCSSSSKRSKRR 103
Query: 131 REKIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPL 172
+ C AM+ + +WVVTKFVKEHTH L
Sbjct: 104 LSE----------SCDAMVRIELQGHEKWVVTKFVKEHTHGL 135
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana
GN=FRS10 PE=2 SV=2
Length = 685
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 72 PYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKR 131
PYVGQ F ++ A +Y+ +A + GF IR ++ + S+ G R VC + G+ P K+
Sbjct: 55 PYVGQIFTTDDEAFEYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKK 113
Query: 132 EKI--VRQRAETRVGCRA-MILVRKVNSG--QWVVTKFVKEHTHPL 172
+ R+R R GC + L ++V G W V++F H H L
Sbjct: 114 ANVEHPRERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHEL 159
>sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens GN=CGNL1 PE=1 SV=2
Length = 1302
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 20 VGDRVGNEDEIYRTSVEVTLHQDQDNKVDPDSLALETIPEGIPSVASVQAD------EPY 73
+G + E+E+ +T+ + Q++ PDS A + + PS ++ QA +
Sbjct: 487 LGAQSKKEEEV-KTATATLMLQNRATATSPDSGAKKISVKTFPSASNTQATPDLLKGQQE 545
Query: 74 VGQQFESEAAAHAFYN-----------AYATRVGFVIRVSKLSRSRRDGSAIGRALVCN 121
+ QQ E A YN A +V V + +SR GSA G CN
Sbjct: 546 LTQQTNEETAKQILYNYLKEGSTDNDDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACN 604
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 185 QYPNEHDKIRELSQQLALEKKRAANYKRHLELIVEQIEEHNESLAKKIQHVVDSVK 240
Q+ + +K+ + QQ LE+KR HL+ IV Q E++++ L++ + + S K
Sbjct: 204 QFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPLTSSK 259
>sp|O15055|PER2_HUMAN Period circadian protein homolog 2 OS=Homo sapiens GN=PER2 PE=1
SV=2
Length = 1255
Score = 32.0 bits (71), Expect = 4.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 7 SNVNGELVGNSVDVGDRVGNEDEIYRTSVEVTLHQDQDNKVDPDSLALETIPEGIPSVAS 66
S N G S D +V E+ +T E+ +H D K + L T+ + SV
Sbjct: 88 SEHNPSTSGCSSDQSSKVDTHKELIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQ 147
Query: 67 VQADEPYVGQQFESEA 82
V+A+E Y SE
Sbjct: 148 VKANEEYYQLLMSSEG 163
>sp|B0S5A7|CTL5B_DANRE Choline transporter-like protein 5-B (Fragment) OS=Danio rerio
GN=slc44a5b PE=3 SV=1
Length = 700
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 54 LETIPEGIPSVASVQADEPYVGQQFESEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGSA 113
+ I E +PS+ P + F S AH F+N YA V + L + DGSA
Sbjct: 603 IPVIQEEVPSLNYYWV--PLLTVIFGSYMIAHGFFNVYAMCVDTLFLCFLLDLEKNDGSA 660
Query: 114 IGRALVCNKEGYRLPDKREK 133
+C+ L K +K
Sbjct: 661 TRPYYMCSSLRAILNKKNQK 680
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,872,029
Number of Sequences: 539616
Number of extensions: 3583152
Number of successful extensions: 11331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 11192
Number of HSP's gapped (non-prelim): 168
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)