Query 025532
Match_columns 251
No_of_seqs 206 out of 557
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 91.2 1.2 4E-05 32.7 8.0 31 144-174 44-75 (76)
2 2rpr_A Flywch-type zinc finger 88.3 0.81 2.8E-05 33.5 5.3 23 144-172 51-73 (87)
3 1wj2_A Probable WRKY transcrip 86.2 0.98 3.4E-05 33.3 4.6 31 143-173 46-77 (78)
4 1qc6_A EVH1 domain from ENA/VA 51.7 6 0.00021 31.2 1.7 23 72-94 86-108 (130)
5 2lju_A Putative oxidoreductase 48.5 14 0.00049 28.6 3.3 26 74-103 62-87 (108)
6 2jya_A AGR_C_3324P, uncharacte 42.6 11 0.00037 29.2 1.8 26 74-103 54-79 (106)
7 1mke_A WIP - N-WAsp, fusion pr 39.3 10 0.00036 31.0 1.3 26 70-95 115-140 (152)
8 1evh_A WH1 domain, protein (ME 36.9 13 0.00043 28.6 1.4 22 72-93 85-106 (112)
9 1xod_A Spred1; sprouty, EVH1, 36.9 14 0.00049 28.6 1.7 23 71-93 88-110 (118)
10 1egx_A VAsp, vasodilator-stimu 36.7 15 0.0005 28.4 1.7 22 72-93 87-108 (115)
11 2jp2_A Spred-2, sprouty-relate 35.0 16 0.00055 28.8 1.7 23 71-93 97-119 (126)
12 3lo3_A Uncharacterized conserv 34.9 16 0.00054 26.9 1.6 22 74-95 56-77 (94)
13 2ifs_A N-WAsp, wiskott-aldrich 32.0 16 0.00056 30.3 1.4 25 71-95 133-157 (169)
14 2fiu_A Conserved hypothetical 31.9 19 0.00064 26.8 1.6 19 76-94 59-77 (99)
15 1ddw_A GLGF-domain protein hom 26.3 28 0.00096 27.1 1.8 22 72-93 84-105 (120)
16 3ct8_A Protein BH2160, putativ 24.4 51 0.0017 24.8 3.0 29 73-101 23-51 (146)
17 3bsu_A Ribonuclease H1, RNAse 22.3 42 0.0014 22.4 1.8 14 76-89 36-49 (53)
18 1gcc_A Ethylene responsive ele 20.6 48 0.0016 22.7 1.9 25 72-97 28-53 (63)
19 3syx_A Sprouty-related, EVH1 d 20.5 41 0.0014 26.8 1.7 20 73-92 97-116 (130)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=91.22 E-value=1.2 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=25.5
Q ss_pred CCccEEEEEee-cCceEEEEEecccCCCCCCC
Q 025532 144 GCRAMILVRKV-NSGQWVVTKFVKEHTHPLTP 174 (251)
Q Consensus 144 GC~A~i~vk~~-~~gkW~V~~f~~eHNH~L~p 174 (251)
||+|+=.|.+. ++..-.++-...+|||++.+
T Consensus 44 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 44 GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 99999888764 46678888889999999754
No 2
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=88.34 E-value=0.81 Score=33.51 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=16.3
Q ss_pred CCccEEEEEeecCceEEEEEecccCCCCC
Q 025532 144 GCRAMILVRKVNSGQWVVTKFVKEHTHPL 172 (251)
Q Consensus 144 GC~A~i~vk~~~~gkW~V~~f~~eHNH~L 172 (251)
+|+|++.... .+ |. ....||||.
T Consensus 51 kCrARi~T~~--~~---~~-~~~~HnH~p 73 (87)
T 2rpr_A 51 GCRSRAITQG--HR---IM-VMRSHCHQP 73 (87)
T ss_dssp CCCCEEEEET--TE---EE-ECSCCSSCC
T ss_pred CCCEEEEEcC--CC---EE-CCCCcCCCC
Confidence 8999988754 22 32 567899973
No 3
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=86.17 E-value=0.98 Score=33.30 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=25.3
Q ss_pred cCCccEEEEEee-cCceEEEEEecccCCCCCC
Q 025532 143 VGCRAMILVRKV-NSGQWVVTKFVKEHTHPLT 173 (251)
Q Consensus 143 tGC~A~i~vk~~-~~gkW~V~~f~~eHNH~L~ 173 (251)
.||+|+=.|.+. .+..-+++-...+||||+.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 399999888764 4677888888999999974
No 4
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=51.69 E-value=6 Score=31.15 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.7
Q ss_pred CccCCccCCHHHHHHHHHHHhhh
Q 025532 72 PYVGQQFESEAAAHAFYNAYATR 94 (251)
Q Consensus 72 P~vGM~F~S~eeA~~FYn~YA~~ 94 (251)
=..|+.|.|++||..|++.....
T Consensus 86 ~~~GL~F~se~eA~~F~~~~~~a 108 (130)
T 1qc6_A 86 QVYGLNFASKEEATTFSNAMLFA 108 (130)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHH
Confidence 46799999999999999998875
No 5
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=48.47 E-value=14 Score=28.59 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.2
Q ss_pred cCCccCCHHHHHHHHHHHhhhcCeeEEEee
Q 025532 74 VGQQFESEAAAHAFYNAYATRVGFVIRVSK 103 (251)
Q Consensus 74 vGM~F~S~eeA~~FYn~YA~~~GF~iR~~~ 103 (251)
+.+.|+|.|+|.. ||.+.|..-.+..
T Consensus 62 v~L~F~skE~Aia----yAek~G~~y~V~e 87 (108)
T 2lju_A 62 VCLSFTTRELAIA----YAVAHKIDYTVLQ 87 (108)
T ss_dssp SCEEESSHHHHHH----HHHHTTCEEEEEC
T ss_pred ceEecCCHHHHHH----HHHHcCCEEEEec
Confidence 5789999999975 6888998877653
No 6
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=42.60 E-value=11 Score=29.18 Aligned_cols=26 Identities=42% Similarity=0.538 Sum_probs=21.0
Q ss_pred cCCccCCHHHHHHHHHHHhhhcCeeEEEee
Q 025532 74 VGQQFESEAAAHAFYNAYATRVGFVIRVSK 103 (251)
Q Consensus 74 vGM~F~S~eeA~~FYn~YA~~~GF~iR~~~ 103 (251)
+.+.|+|.|+|.. ||.+.|..-.+..
T Consensus 54 v~L~F~skE~Aia----yAek~G~~y~V~e 79 (106)
T 2jya_A 54 VKLTFETQEQAEA----YAQRKGIEYRVIL 79 (106)
T ss_dssp EEEEESSHHHHHH----HHHHHTCEEEECC
T ss_pred ceEecCCHHHHHH----HHHHcCCEEEEeC
Confidence 4689999999975 6888888877653
No 7
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=39.27 E-value=10 Score=30.98 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCCccCCccCCHHHHHHHHHHHhhhc
Q 025532 70 DEPYVGQQFESEAAAHAFYNAYATRV 95 (251)
Q Consensus 70 ~~P~vGM~F~S~eeA~~FYn~YA~~~ 95 (251)
..=.+|+.|.+++||..||+.-....
T Consensus 115 d~c~~GLnFade~EA~~F~~~V~~~l 140 (152)
T 1mke_A 115 DTCQVALNFANEEEAKKFRKAVTDLL 140 (152)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCHHHHHHHHHHHHHHH
Confidence 34568999999999999999876654
No 8
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=36.93 E-value=13 Score=28.62 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.7
Q ss_pred CccCCccCCHHHHHHHHHHHhh
Q 025532 72 PYVGQQFESEAAAHAFYNAYAT 93 (251)
Q Consensus 72 P~vGM~F~S~eeA~~FYn~YA~ 93 (251)
=..|+.|.|++||..|+.....
T Consensus 85 ~~~GLnF~se~eA~~F~~~v~~ 106 (112)
T 1evh_A 85 QVYGLNFGSKEDANVFASAMMH 106 (112)
T ss_dssp CEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 4679999999999999987644
No 9
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=36.92 E-value=14 Score=28.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.3
Q ss_pred CCccCCccCCHHHHHHHHHHHhh
Q 025532 71 EPYVGQQFESEAAAHAFYNAYAT 93 (251)
Q Consensus 71 ~P~vGM~F~S~eeA~~FYn~YA~ 93 (251)
.=..|+.|.|++||.+|+.....
T Consensus 88 ~~~~GL~F~se~eA~~F~~~v~~ 110 (118)
T 1xod_A 88 DKKFGLTFQSPADARAFDRGIRR 110 (118)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHHHH
Confidence 34579999999999999987654
No 10
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=36.73 E-value=15 Score=28.44 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.7
Q ss_pred CccCCccCCHHHHHHHHHHHhh
Q 025532 72 PYVGQQFESEAAAHAFYNAYAT 93 (251)
Q Consensus 72 P~vGM~F~S~eeA~~FYn~YA~ 93 (251)
=..|+.|.|++||..|+.....
T Consensus 87 ~~~GLnF~se~eA~~F~~~v~~ 108 (115)
T 1egx_A 87 QVWGLNFGSKEDAAQFAAGMAS 108 (115)
T ss_dssp CEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 4679999999999999987644
No 11
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=35.03 E-value=16 Score=28.80 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.2
Q ss_pred CCccCCccCCHHHHHHHHHHHhh
Q 025532 71 EPYVGQQFESEAAAHAFYNAYAT 93 (251)
Q Consensus 71 ~P~vGM~F~S~eeA~~FYn~YA~ 93 (251)
.=..|+.|.|++||..|+.....
T Consensus 97 ~~~~GLnF~se~eA~~F~~~v~~ 119 (126)
T 2jp2_A 97 NRKFGLTFQSPADARAFDRGVRK 119 (126)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHHHH
Confidence 34589999999999999987654
No 12
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=34.86 E-value=16 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.1
Q ss_pred cCCccCCHHHHHHHHHHHhhhc
Q 025532 74 VGQQFESEAAAHAFYNAYATRV 95 (251)
Q Consensus 74 vGM~F~S~eeA~~FYn~YA~~~ 95 (251)
+=.+|+|.++|..||+.=+...
T Consensus 56 viieFps~~aa~a~y~SpeYq~ 77 (94)
T 3lo3_A 56 VILEFPSREDAYNWYHSEEYQA 77 (94)
T ss_dssp EEEEESSHHHHHHHHHSHHHHT
T ss_pred EEEECCCHHHHHHHHCCHHHHH
Confidence 3469999999999999644433
No 13
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=32.01 E-value=16 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCccCCccCCHHHHHHHHHHHhhhc
Q 025532 71 EPYVGQQFESEAAAHAFYNAYATRV 95 (251)
Q Consensus 71 ~P~vGM~F~S~eeA~~FYn~YA~~~ 95 (251)
.=.+|+.|.+++||..||+.-....
T Consensus 133 ~c~~GLnFade~EA~~F~~~V~~~l 157 (169)
T 2ifs_A 133 TCQVALNFANEEEAKKFRKAVTDLL 157 (169)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHHH
Confidence 4458999999999999999876643
No 14
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=31.95 E-value=19 Score=26.78 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.8
Q ss_pred CccCCHHHHHHHHHHHhhh
Q 025532 76 QQFESEAAAHAFYNAYATR 94 (251)
Q Consensus 76 M~F~S~eeA~~FYn~YA~~ 94 (251)
.+|+|.++|..||+.=+..
T Consensus 59 ieFpS~~aa~~~~~s~~Yq 77 (99)
T 2fiu_A 59 IEFPSVQHAIDCYNSPEYQ 77 (99)
T ss_dssp EEESSHHHHHHHHHSHHHH
T ss_pred EECCCHHHHHHHHcCHHHH
Confidence 5999999999999864443
No 15
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=26.27 E-value=28 Score=27.09 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.6
Q ss_pred CccCCccCCHHHHHHHHHHHhh
Q 025532 72 PYVGQQFESEAAAHAFYNAYAT 93 (251)
Q Consensus 72 P~vGM~F~S~eeA~~FYn~YA~ 93 (251)
=..|+.|.|++||..|......
T Consensus 84 ~~~GLnF~s~~eA~~F~~~~~~ 105 (120)
T 1ddw_A 84 TVYGLGFSSEHHLSKFAEKFQE 105 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeccCCHHHHHHHHHHHHH
Confidence 4569999999999999887654
No 16
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=24.41 E-value=51 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.8
Q ss_pred ccCCccCCHHHHHHHHHHHhhhcCeeEEE
Q 025532 73 YVGQQFESEAAAHAFYNAYATRVGFVIRV 101 (251)
Q Consensus 73 ~vGM~F~S~eeA~~FYn~YA~~~GF~iR~ 101 (251)
.+++.-...++|..||..+....||.+..
T Consensus 23 hv~l~v~Dl~~a~~FY~~~~~~LG~~~~~ 51 (146)
T 3ct8_A 23 HVEINVDHLEESIAFWDWLLGELGYEDYQ 51 (146)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHhhhhhCCCEEEE
Confidence 45667789999999999999999998864
No 17
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=22.29 E-value=42 Score=22.37 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.6
Q ss_pred CccCCHHHHHHHHH
Q 025532 76 QQFESEAAAHAFYN 89 (251)
Q Consensus 76 M~F~S~eeA~~FYn 89 (251)
..|.|.+||.+|+.
T Consensus 36 K~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 36 KKFATEDEAWAFVR 49 (53)
T ss_dssp EEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 58999999999985
No 18
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=20.61 E-value=48 Score=22.73 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.0
Q ss_pred CccCCccCCHHHHHHHHHHHhhh-cCe
Q 025532 72 PYVGQQFESEAAAHAFYNAYATR-VGF 97 (251)
Q Consensus 72 P~vGM~F~S~eeA~~FYn~YA~~-~GF 97 (251)
-++| .|+|.|||-.-|+.-|.. .|.
T Consensus 28 ~~LG-tf~T~eeAA~AyD~Aa~~~~G~ 53 (63)
T 1gcc_A 28 VWLG-TFETAEDAALAYDRAAFRMRGS 53 (63)
T ss_dssp EEEE-EESSHHHHHHHHHHHHHHHHSS
T ss_pred EEee-eCCCHHHHHHHHHHHHHHhcCc
Confidence 4567 899999999999988874 344
No 19
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=20.49 E-value=41 Score=26.76 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.2
Q ss_pred ccCCccCCHHHHHHHHHHHh
Q 025532 73 YVGQQFESEAAAHAFYNAYA 92 (251)
Q Consensus 73 ~vGM~F~S~eeA~~FYn~YA 92 (251)
.-|+.|.|+++|..|....-
T Consensus 97 ~yGL~F~S~~dA~~F~~~~~ 116 (130)
T 3syx_A 97 KFGLTFQSPADARAFDRGIR 116 (130)
T ss_dssp EEEEEESSHHHHHHHHHHHH
T ss_pred EeecccCCHHHHHHHHHHHH
Confidence 46999999999999987654
Done!