Query 025533
Match_columns 251
No_of_seqs 307 out of 1910
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2804 Phosphorylcholine tran 100.0 3.4E-76 7.4E-81 533.6 20.2 221 15-240 58-278 (348)
2 PLN02413 choline-phosphate cyt 100.0 1.5E-72 3.3E-77 509.9 24.7 244 6-249 13-260 (294)
3 cd02174 CCT CTP:phosphocholine 100.0 1.4E-39 2.9E-44 272.7 17.6 150 19-170 1-150 (150)
4 cd02173 ECT CTP:phosphoethanol 100.0 7.2E-37 1.6E-41 256.6 17.4 149 20-170 2-152 (152)
5 PLN02406 ethanolamine-phosphat 100.0 3.3E-36 7.2E-41 286.7 15.8 159 14-174 245-406 (418)
6 KOG2803 Choline phosphate cyti 100.0 5.3E-36 1.1E-40 273.3 11.7 139 15-157 3-141 (358)
7 PTZ00308 ethanolamine-phosphat 100.0 5E-35 1.1E-39 274.6 16.1 154 16-171 188-343 (353)
8 COG0615 TagD Cytidylyltransfer 100.0 3.9E-34 8.4E-39 236.5 12.2 132 20-157 1-139 (140)
9 PTZ00308 ethanolamine-phosphat 100.0 1.9E-32 4E-37 257.3 16.3 147 11-161 2-148 (353)
10 PLN02406 ethanolamine-phosphat 100.0 2.1E-32 4.5E-37 260.8 15.8 139 15-157 48-190 (418)
11 KOG2803 Choline phosphate cyti 100.0 6.1E-29 1.3E-33 227.2 11.5 160 13-177 191-352 (358)
12 cd02172 RfaE_N N-terminal doma 100.0 1.6E-27 3.6E-32 197.9 15.3 136 21-160 5-144 (144)
13 cd02170 cytidylyltransferase c 100.0 1.7E-27 3.6E-32 194.3 15.0 133 20-157 1-135 (136)
14 TIGR02199 rfaE_dom_II rfaE bif 100.0 2.2E-27 4.7E-32 197.1 14.7 131 20-157 11-144 (144)
15 TIGR01518 g3p_cytidyltrns glyc 99.9 2.2E-26 4.7E-31 186.0 12.9 123 23-155 1-125 (125)
16 cd02171 G3P_Cytidylyltransfera 99.9 8E-26 1.7E-30 182.8 14.8 128 20-157 1-128 (129)
17 PRK11316 bifunctional heptose 99.9 3.9E-23 8.5E-28 198.6 14.4 132 20-157 340-473 (473)
18 COG2870 RfaE ADP-heptose synth 99.9 4.6E-22 9.9E-27 187.8 11.6 129 20-158 332-466 (467)
19 cd02064 FAD_synthetase_N FAD s 99.8 3.1E-20 6.6E-25 159.0 13.0 149 23-173 2-173 (180)
20 PRK05627 bifunctional riboflav 99.8 1.3E-19 2.9E-24 167.5 15.2 148 22-173 15-188 (305)
21 PRK00777 phosphopantetheine ad 99.8 4.4E-20 9.5E-25 155.2 9.9 128 20-159 1-146 (153)
22 PRK07143 hypothetical protein; 99.8 1E-17 2.2E-22 153.3 15.5 146 21-173 16-177 (279)
23 TIGR01527 arch_NMN_Atrans nico 99.8 1.5E-17 3.2E-22 141.6 13.7 123 22-160 1-138 (165)
24 PRK00168 coaD phosphopantethei 99.7 1.4E-17 3.1E-22 140.2 12.5 129 20-159 1-139 (159)
25 cd02039 cytidylyltransferase_l 99.7 1.1E-17 2.4E-22 134.3 10.3 128 22-154 1-143 (143)
26 TIGR00083 ribF riboflavin kina 99.7 1.1E-16 2.3E-21 147.2 11.9 147 23-173 1-171 (288)
27 PF01467 CTP_transf_2: Cytidyl 99.7 4.2E-17 9E-22 131.7 7.0 127 24-154 1-157 (157)
28 PRK01170 phosphopantetheine ad 99.7 1.5E-16 3.3E-21 148.0 10.6 127 22-158 2-142 (322)
29 COG0196 RibF FAD synthase [Coe 99.7 2.8E-16 6E-21 145.3 11.8 150 20-172 15-187 (304)
30 cd02163 PPAT Phosphopantethein 99.7 5.1E-16 1.1E-20 130.0 11.9 127 22-159 1-137 (153)
31 cd02166 NMNAT_Archaea Nicotina 99.6 1.5E-15 3.2E-20 128.6 11.8 121 22-158 1-138 (163)
32 TIGR01510 coaD_prev_kdtB pante 99.6 7.5E-15 1.6E-19 123.1 12.6 127 22-159 1-137 (155)
33 PF06574 FAD_syn: FAD syntheta 99.6 5.4E-16 1.2E-20 130.9 4.2 128 20-150 5-157 (157)
34 PRK13964 coaD phosphopantethei 99.6 2.9E-14 6.3E-19 118.6 12.8 123 20-155 1-136 (140)
35 TIGR00125 cyt_tran_rel cytidyl 99.6 7.1E-15 1.5E-19 105.1 7.1 65 22-88 1-65 (66)
36 COG0669 CoaD Phosphopantethein 99.5 5.5E-14 1.2E-18 118.3 11.4 88 20-114 2-90 (159)
37 PRK01153 nicotinamide-nucleoti 99.5 1.3E-13 2.8E-18 118.3 12.8 124 22-159 2-140 (174)
38 cd02169 Citrate_lyase_ligase C 99.5 1.8E-13 4E-18 126.3 14.1 141 18-169 112-291 (297)
39 cd02164 PPAT_CoAS phosphopante 99.5 4.5E-14 9.7E-19 117.7 8.8 123 22-153 1-142 (143)
40 PLN02388 phosphopantetheine ad 99.5 1.7E-13 3.6E-18 118.1 11.6 131 20-159 19-168 (177)
41 cd02168 NMNAT_Nudix Nicotinami 99.5 1.2E-13 2.7E-18 119.1 9.5 123 23-157 2-144 (181)
42 PRK05379 bifunctional nicotina 99.5 1.9E-13 4.1E-18 128.0 11.4 132 18-160 4-152 (340)
43 smart00764 Citrate_ly_lig Citr 99.5 7.7E-13 1.7E-17 114.3 12.8 133 26-169 5-176 (182)
44 cd02167 NMNAT_NadR Nicotinamid 99.5 9.6E-13 2.1E-17 111.1 12.1 127 23-160 2-151 (158)
45 PRK00071 nadD nicotinic acid m 99.4 2.8E-12 6.2E-17 111.5 14.5 97 19-118 3-113 (203)
46 cd02165 NMNAT Nicotinamide/nic 99.4 3.8E-12 8.2E-17 109.6 12.7 94 22-118 1-107 (192)
47 COG1019 Predicted nucleotidylt 99.4 1E-12 2.2E-17 110.2 8.3 127 18-154 3-145 (158)
48 PRK06973 nicotinic acid mononu 99.4 1.4E-11 3E-16 111.0 13.9 104 11-118 12-134 (243)
49 PRK07152 nadD putative nicotin 99.3 9.1E-12 2E-16 116.5 12.1 135 20-159 1-169 (342)
50 TIGR00482 nicotinate (nicotina 99.3 1.2E-11 2.5E-16 107.0 11.7 92 24-118 1-106 (193)
51 COG1057 NadD Nicotinic acid mo 99.3 1.9E-11 4.1E-16 107.0 13.1 135 19-158 2-174 (197)
52 PRK08887 nicotinic acid mononu 99.3 1.5E-11 3.2E-16 105.3 11.7 130 20-158 2-149 (174)
53 PRK13793 nicotinamide-nucleoti 99.3 4.6E-12 1E-16 110.8 8.0 60 21-84 5-65 (196)
54 PRK13671 hypothetical protein; 99.3 1.8E-11 3.9E-16 113.1 11.7 87 25-115 5-102 (298)
55 PRK08099 bifunctional DNA-bind 99.2 1.1E-10 2.4E-15 111.8 13.0 130 20-160 52-208 (399)
56 cd02156 nt_trans nucleotidyl t 99.1 4.6E-11 9.9E-16 93.5 4.6 57 23-83 2-58 (105)
57 TIGR00124 cit_ly_ligase [citra 99.1 7.6E-10 1.6E-14 103.8 13.4 126 20-158 139-309 (332)
58 TIGR01526 nadR_NMN_Atrans nico 99.1 9.3E-10 2E-14 102.6 12.6 65 20-88 1-66 (325)
59 cd09286 NMNAT_Eukarya Nicotina 99.1 8.9E-10 1.9E-14 98.0 11.1 68 22-89 2-72 (225)
60 COG1056 NadR Nicotinamide mono 99.1 3.6E-10 7.9E-15 97.0 7.1 129 19-160 2-143 (172)
61 PRK13670 hypothetical protein; 99.0 9.1E-10 2E-14 105.3 8.8 92 20-115 1-103 (388)
62 PLN02945 nicotinamide-nucleoti 99.0 1.4E-08 3.1E-13 90.7 13.5 65 21-85 23-89 (236)
63 PF05636 HIGH_NTase1: HIGH Nuc 98.8 6.1E-09 1.3E-13 99.6 5.6 92 20-115 1-103 (388)
64 PF08218 Citrate_ly_lig: Citra 98.7 3.1E-07 6.6E-12 79.3 11.5 128 25-165 4-172 (182)
65 KOG3351 Predicted nucleotidylt 98.5 3.5E-07 7.7E-12 82.5 7.3 133 14-154 136-283 (293)
66 COG1323 Predicted nucleotidylt 98.3 2.1E-06 4.6E-11 81.4 7.9 91 21-115 2-103 (358)
67 PRK00380 panC pantoate--beta-a 98.0 1.1E-05 2.4E-10 74.3 6.0 63 22-92 26-93 (281)
68 COG3053 CitC Citrate lyase syn 97.9 0.00027 5.8E-09 65.7 13.1 134 18-165 143-323 (352)
69 cd00560 PanC Pantoate-beta-ala 97.8 4.3E-05 9.3E-10 70.4 6.7 85 22-114 26-120 (277)
70 PLN02660 pantoate--beta-alanin 97.6 0.00014 3.1E-09 67.2 6.2 62 22-91 25-91 (284)
71 TIGR00018 panC pantoate--beta- 97.4 0.00035 7.7E-09 64.5 6.5 62 22-91 26-92 (282)
72 KOG3199 Nicotinamide mononucle 96.9 0.0075 1.6E-07 53.7 9.5 71 18-89 6-80 (234)
73 TIGR00339 sopT ATP sulphurylas 96.9 0.012 2.6E-07 56.7 11.6 91 21-116 184-289 (383)
74 PF02569 Pantoate_ligase: Pant 94.7 0.067 1.5E-06 49.6 5.7 61 28-91 29-92 (280)
75 PRK13477 bifunctional pantoate 94.2 0.082 1.8E-06 52.8 5.7 67 21-91 21-90 (512)
76 cd00517 ATPS ATP-sulfurylase. 92.8 1.9 4.1E-05 41.3 12.0 89 21-115 157-261 (353)
77 COG0414 PanC Panthothenate syn 92.0 0.74 1.6E-05 42.7 7.9 67 21-91 23-92 (285)
78 COG2046 MET3 ATP sulfurylase ( 88.8 2.7 5.9E-05 40.6 8.9 88 21-115 184-286 (397)
79 PRK04149 sat sulfate adenylylt 85.1 9.3 0.0002 37.1 10.5 88 21-115 187-289 (391)
80 PF01747 ATP-sulfurylase: ATP- 84.8 13 0.00027 33.3 10.4 89 22-116 22-125 (215)
81 KOG3042 Panthothenate syntheta 82.9 2 4.4E-05 38.8 4.6 68 19-90 23-93 (283)
82 PRK05537 bifunctional sulfate 76.9 41 0.00089 34.1 12.2 89 21-115 187-289 (568)
83 COG1433 Uncharacterized conser 66.4 24 0.00052 28.8 6.4 51 98-159 57-108 (121)
84 PLN02341 pfkB-type carbohydrat 65.4 1.9 4.2E-05 42.2 -0.2 28 20-47 414-441 (470)
85 cd00672 CysRS_core catalytic c 50.0 29 0.00062 30.6 4.6 41 19-60 19-67 (213)
86 PRK13848 conjugal transfer pro 47.2 58 0.0012 25.7 5.3 47 183-229 3-62 (98)
87 PLN02946 cysteine-tRNA ligase 47.0 29 0.00063 35.3 4.7 41 17-58 77-125 (557)
88 PRK10992 iron-sulfur cluster r 46.0 14 0.0003 32.9 2.0 82 86-169 8-93 (220)
89 PF02579 Nitro_FeMo-Co: Dinitr 43.9 1.1E+02 0.0024 22.3 6.4 48 98-156 45-93 (94)
90 PF10376 Mei5: Double-strand r 41.7 1.4E+02 0.0031 26.7 7.8 57 181-237 136-196 (221)
91 PRK12418 cysteinyl-tRNA synthe 41.5 48 0.001 32.1 5.0 39 20-59 9-55 (384)
92 PRK00260 cysS cysteinyl-tRNA s 41.2 39 0.00085 33.2 4.5 38 19-57 22-69 (463)
93 COG0162 TyrS Tyrosyl-tRNA synt 40.6 1.2E+02 0.0026 29.7 7.6 188 20-235 32-264 (401)
94 TIGR00435 cysS cysteinyl-tRNA 40.4 44 0.00095 33.0 4.7 38 19-57 20-67 (465)
95 PRK14536 cysS cysteinyl-tRNA s 40.0 20 0.00044 35.8 2.3 32 16-47 19-58 (490)
96 COG5481 Uncharacterized conser 39.1 50 0.0011 24.0 3.5 41 157-199 21-61 (67)
97 PTZ00399 cysteinyl-tRNA-synthe 37.7 46 0.00099 34.5 4.5 41 17-58 57-108 (651)
98 PRK14535 cysS cysteinyl-tRNA s 37.1 52 0.0011 34.5 4.7 40 17-57 245-294 (699)
99 COG0525 ValS Valyl-tRNA synthe 36.5 1.6E+02 0.0035 31.8 8.3 110 126-248 60-184 (877)
100 COG0826 Collagenase and relate 35.3 2.1E+02 0.0044 27.4 8.2 65 86-157 93-158 (347)
101 PF00578 AhpC-TSA: AhpC/TSA fa 34.3 36 0.00078 25.8 2.5 45 17-61 24-70 (124)
102 TIGR02026 BchE magnesium-proto 34.2 3E+02 0.0064 27.2 9.4 130 25-162 276-427 (497)
103 TIGR03687 pupylate_cterm ubiqu 33.4 83 0.0018 20.1 3.5 16 219-234 15-30 (33)
104 COG2846 Regulator of cell morp 31.5 34 0.00074 30.6 2.1 71 99-169 19-94 (221)
105 PF01406 tRNA-synt_1e: tRNA sy 31.2 34 0.00074 32.2 2.1 43 15-58 3-55 (300)
106 PRK13276 cell wall biosynthesi 30.3 48 0.001 29.9 2.8 81 87-169 9-96 (224)
107 PF07820 TraC: TraC-like prote 29.9 1.9E+02 0.0041 22.7 5.7 47 186-232 5-60 (92)
108 cd00851 MTH1175 This uncharact 29.4 2.1E+02 0.0044 21.1 5.9 45 98-153 55-100 (103)
109 KOG3369 Transport protein part 29.3 58 0.0013 28.6 3.1 130 20-166 40-173 (199)
110 TIGR03652 FeS_repair_RIC iron- 29.1 36 0.00077 29.9 1.8 72 98-169 11-89 (216)
111 COG5420 Uncharacterized conser 28.7 73 0.0016 23.5 3.0 33 190-222 6-42 (71)
112 TIGR03492 conserved hypothetic 27.2 2.4E+02 0.0051 27.0 7.2 82 19-114 93-187 (396)
113 TIGR03447 mycothiol_MshC cyste 26.2 1E+02 0.0022 30.2 4.5 40 19-59 35-82 (411)
114 cd00674 LysRS_core_class_I cat 24.6 1.1E+02 0.0023 29.4 4.3 39 22-61 21-67 (353)
115 PF08702 Fib_alpha: Fibrinogen 24.5 3.5E+02 0.0075 22.6 6.9 45 179-223 25-69 (146)
116 TIGR03471 HpnJ hopanoid biosyn 23.7 4.9E+02 0.011 25.3 8.8 117 38-161 288-431 (472)
117 PF13727 CoA_binding_3: CoA-bi 23.5 1.3E+02 0.0028 24.0 4.1 12 50-61 103-114 (175)
118 PF07765 KIP1: KIP1-like prote 21.7 1E+02 0.0022 23.2 2.8 50 188-238 16-65 (74)
119 COG0215 CysS Cysteinyl-tRNA sy 21.2 47 0.001 33.2 1.1 28 21-48 23-58 (464)
120 COG1908 FrhD Coenzyme F420-red 20.9 2.1E+02 0.0046 23.7 4.7 62 11-82 23-85 (132)
121 cd02969 PRX_like1 Peroxiredoxi 20.1 2E+02 0.0043 23.5 4.6 45 17-61 24-69 (171)
No 1
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-76 Score=533.57 Aligned_cols=221 Identities=63% Similarity=1.089 Sum_probs=213.9
Q ss_pred CCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCC
Q 025533 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (251)
Q Consensus 15 ~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p 94 (251)
.|.+||++||++|+||+||.||+++|+|||++||+.|||||||+|+.++++||++||++.||+|.|+||+|||+||+++|
T Consensus 58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~AP 137 (348)
T KOG2804|consen 58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAP 137 (348)
T ss_pred CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcCCCcc
Q 025533 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRK 174 (251)
Q Consensus 95 ~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg~~~~ 174 (251)
|.+|++||++|+||+|+|+++||.+. +.+|+|+.+|+.|+|+.|+||+|||||+||.||+++|+.|++|||+|||||+
T Consensus 138 W~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~k 215 (348)
T KOG2804|consen 138 WTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAK 215 (348)
T ss_pred ccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHH
Confidence 99999999999999999999999854 3479999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc
Q 025533 175 DLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEGCH 240 (251)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~~~~~~~ 240 (251)
||||||+++++|++|++|++|+++++.+++++++++ .+++++|+++|++||.+||++|+++||
T Consensus 216 eLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~~---~~l~~kW~e~s~e~i~~fle~f~~~~~ 278 (348)
T KOG2804|consen 216 ELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEFS---RDLIQKWEEKSREFIAGFLELFGKGGA 278 (348)
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999984 457899999999999999999999997
No 2
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=1.5e-72 Score=509.92 Aligned_cols=244 Identities=88% Similarity=1.381 Sum_probs=233.7
Q ss_pred CCCCCCCCCCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccC
Q 025533 6 SNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKW 85 (251)
Q Consensus 6 ~~~~~~~~~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~ 85 (251)
+.++..+++++..++++||++|+||+||.||+++|++|+++||+++|||||++|+.++++||+|++++.||+++|++|+|
T Consensus 13 ~~~~~~~~~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKy 92 (294)
T PLN02413 13 SSGSATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKW 92 (294)
T ss_pred ccccCCCCCCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhccc
Confidence 34456777888999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccccccCCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHH
Q 025533 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMR 165 (251)
Q Consensus 86 VD~Vi~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r 165 (251)
||+||+++||.++.+||++++||+|+||+++|.++.+.+.|.|+.++++|+|..++|++++|||+|++||+++|+.|++|
T Consensus 93 VDeVV~~aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~R 172 (294)
T PLN02413 93 VDEVIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMR 172 (294)
T ss_pred ccEEeeCCCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876666789999999999999999999999999999999999999999
Q ss_pred HhhcCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHhhhHHHHHHHHHHHhcccC
Q 025533 166 NLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVA----MHRNEWVENADRWVAGFLEMFEEGCHK 241 (251)
Q Consensus 166 ~l~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~f~~~~~~~~~~ 241 (251)
|++||+|++||||||+++++|++|++|++|+++++++++++|++++.++ .++++|+++|++||.+||++|+++||.
T Consensus 173 n~~rg~~~~~l~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~ 252 (294)
T PLN02413 173 NLARGYSRKDLGVSYVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENADRWVAGFLEKFEEGCHK 252 (294)
T ss_pred HHHhcCCHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 489999999999999999999999999
Q ss_pred CCCccccC
Q 025533 242 MPSGIEFK 249 (251)
Q Consensus 242 ~~~~~~~~ 249 (251)
|++||++|
T Consensus 253 ~~~~~~~~ 260 (294)
T PLN02413 253 MGTAIKDR 260 (294)
T ss_pred HHHHHHHH
Confidence 99999975
No 3
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=1.4e-39 Score=272.70 Aligned_cols=150 Identities=62% Similarity=1.031 Sum_probs=141.5
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccch
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it 98 (251)
++++||++|+||+||.||+++|++|+++||+++|||||++|+.+.++||+|+++++||+++|++|+|||+|++.+||.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 46789999999999999999999999998779999999999999888988999999999999999999999999999989
Q ss_pred HHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 025533 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (251)
Q Consensus 99 ~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg 170 (251)
.+++++++||++++|+|++.+. .+.|.|+.+++.|++.+++|++++|||+|++||+++|+.|.+||+.+|
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~~ 150 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYLDA--DGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150 (150)
T ss_pred HHHHHHhCCCEEEECCCCCCCC--CchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhccC
Confidence 9999999999999999988653 356789999999999999999999999999999999999999999987
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=7.2e-37 Score=256.64 Aligned_cols=149 Identities=38% Similarity=0.639 Sum_probs=137.2
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCccccccCCCccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~i 97 (251)
.++||++|+||+||.||+++|++|+++| ++|||||++|+.+...|| +|+++++||+++|++|+|||+|++.+|+.+
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~ 79 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVI 79 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcc
Confidence 3589999999999999999999999995 899999999999888887 489999999999999999999999999988
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg 170 (251)
+.+++++++||++++|.++..+....+++.|+.+++.|++..+++++++|||+|++||+++++.|++||.+||
T Consensus 80 ~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 80 TKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred hHHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 8999999999999999987653212367889999999999999999999999999999999999999999986
No 5
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=3.3e-36 Score=286.71 Aligned_cols=159 Identities=35% Similarity=0.552 Sum_probs=144.0
Q ss_pred CCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCcccccc
Q 025533 14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 14 ~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
..|.+..++||++|+||+||.||+++|++|++++ ++|||||++|+.+.++|| +|+|+++||+++|++|+|||+|++
T Consensus 245 ~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~VVi 322 (418)
T PLN02406 245 KGPGPDARIVYIDGAFDLFHAGHVEILRLARALG--DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDEVII 322 (418)
T ss_pred CCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccEEEe
Confidence 3455677799999999999999999999999995 899999999999999997 699999999999999999999999
Q ss_pred CCCccchHHHHHhcCCCEEEeCCCcccc-cCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 025533 92 DAPWVVTQEFLDKHQIDFVAHDSLPYAD-ASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (251)
Q Consensus 92 ~~p~~it~~~l~~~~iD~vv~G~d~~~~-~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg 170 (251)
++||.++.++|++++||+++||+++... ..+.+.|.|...++.|+|..+++++++|||+|++||+++++.|.+||.+|+
T Consensus 323 ~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~~Rn~~K~ 402 (418)
T PLN02406 323 GAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKRNEKKA 402 (418)
T ss_pred CCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999876421 123457899999999999999999999999999999999999999999997
Q ss_pred CCcc
Q 025533 171 YSRK 174 (251)
Q Consensus 171 ~~~~ 174 (251)
.++.
T Consensus 403 ~ke~ 406 (418)
T PLN02406 403 ESEK 406 (418)
T ss_pred HHHH
Confidence 6443
No 6
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=273.30 Aligned_cols=139 Identities=47% Similarity=0.778 Sum_probs=132.0
Q ss_pred CCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCC
Q 025533 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (251)
Q Consensus 15 ~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p 94 (251)
+...+|.+|+++||||++|.||.++|+|||+++ ++|||||.+|+++...||+|||+.+||++|+++|||||+||.++|
T Consensus 3 ~~~~~~~rVw~DGCfDm~HyGHanaLrQAkalG--dkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~AP 80 (358)
T KOG2803|consen 3 PKKNRPVRVWADGCFDMVHYGHANALRQAKALG--DKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAP 80 (358)
T ss_pred CcCCCceeEEeccchhhhhhhhhHHHHHHHHhC--CeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCC
Confidence 456788999999999999999999999999994 999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHH
Q 025533 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 95 ~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
|..|.++++++++|+++||+|+..++ .|.|.|..+|++|++.+++||.|+|||+|+.|++-
T Consensus 81 yvtt~~~md~y~cd~vvHGdDit~~a--~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll 141 (358)
T KOG2803|consen 81 YVTTLEWMDKYGCDYVVHGDDITLDA--DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLL 141 (358)
T ss_pred eeccHHHHHHhCCeEEEeCCcceecC--CCccHHHHHHHhcchheeeeccCcchhhhhhHhhh
Confidence 99999999999999999999988776 57899999999999999999999999999999763
No 7
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=5e-35 Score=274.61 Aligned_cols=154 Identities=34% Similarity=0.561 Sum_probs=140.8
Q ss_pred CCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCccccccCC
Q 025533 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDA 93 (251)
Q Consensus 16 ~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~~~ 93 (251)
|....++||++|+|||||.||+++|++|+++| |+|||||++|+.+.+.|| +|+++++||+++|++|+|||+|++.+
T Consensus 188 ~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~ 265 (353)
T PTZ00308 188 PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGA 265 (353)
T ss_pred CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcC
Confidence 44445789999999999999999999999996 899999999999998887 48999999999999999999999999
Q ss_pred CccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcCC
Q 025533 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGY 171 (251)
Q Consensus 94 p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg~ 171 (251)
||.++.+++++++||++++|.|+.......+.|.|+..+..|+|..+++++++|||+|++||+++++.|++||.+|+.
T Consensus 266 ~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~~~~~r~~~k~~ 343 (353)
T PTZ00308 266 PFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRA 343 (353)
T ss_pred CCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999876422223578899999999999999999999999999999999999999999965
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=100.00 E-value=3.9e-34 Score=236.53 Aligned_cols=132 Identities=45% Similarity=0.586 Sum_probs=117.3
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccc-ccCCCCCCHHHHHHHHhhccCccccccCCCccch
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHK-FKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~-~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it 98 (251)
|++|+++|+||+||+||+++|+||+++| ++|+|++..|+...+ .|++|+++++||+++|++|+|||+|++++||..+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~ 78 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIK 78 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccC
Confidence 5679999999999999999999999996 888888888877766 4677999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCC------CChHHHHHHHHH
Q 025533 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDG------ISTSDIIMRIVK 157 (251)
Q Consensus 99 ~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~g------iSTT~Ii~rI~~ 157 (251)
.+++++++||+|++|+|++++ .+.+.|+..+ +|.+.+++||++ +||++|++||..
T Consensus 79 ~~~i~~~k~Div~lG~D~~~d---~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 79 FEDIEEYKPDIVVLGDDQKFD---EDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred hHHHHHhCCCEEEECCCCcCC---hHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 999999999999999999964 2456666666 999999999988 888999888763
No 9
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=1.9e-32 Score=257.26 Aligned_cols=147 Identities=41% Similarity=0.695 Sum_probs=134.1
Q ss_pred CCCCCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccc
Q 025533 11 STDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVI 90 (251)
Q Consensus 11 ~~~~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi 90 (251)
++.++...++++||++|+||++|.||+++|+||++++ +.|+||+++|+.+.+.||+|+++++||+++|++|+|||+|+
T Consensus 2 ~~~~~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv 79 (353)
T PTZ00308 2 SPIPPKKPGTIRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVV 79 (353)
T ss_pred CCCCCCCCCcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEE
Confidence 3455566777999999999999999999999999996 78999999999988888889999999999999999999999
Q ss_pred cCCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHH
Q 025533 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQ 161 (251)
Q Consensus 91 ~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~ 161 (251)
++.||..+.+|+++++||+|+||+|+.++. .|.+.|+.+++.|++..++||+++|||+|+.||+.....
T Consensus 80 ~~~p~~~~~~fI~~l~~d~vv~GdD~~~g~--~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~ 148 (353)
T PTZ00308 80 EGYPYTTRLEDLERLECDFVVHGDDISVDL--NGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKS 148 (353)
T ss_pred ECCCCCchHHHHHHhCCCEEEECCCCCCCC--CccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhc
Confidence 988998888999999999999999999876 355789999999999999999999999999999965543
No 10
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=2.1e-32 Score=260.78 Aligned_cols=139 Identities=42% Similarity=0.744 Sum_probs=128.0
Q ss_pred CCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCC
Q 025533 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (251)
Q Consensus 15 ~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p 94 (251)
....++.+||++|+||++|.||+++|+||+++| |+|||||++|+.+.++||+|+++++||+++|++|+|||+|++++|
T Consensus 48 ~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~ap 125 (418)
T PLN02406 48 KKKKKPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAP 125 (418)
T ss_pred ccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCc
Confidence 345677899999999999999999999999996 899999999999998999999999999999999999999999999
Q ss_pred ccchHHHH----HhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHH
Q 025533 95 WVVTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 95 ~~it~~~l----~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
|.++.+++ ++++||+++||+|+.... .|.|.|...+..|++..++||+|+|||+|+.||+.
T Consensus 126 y~~~~d~~~~li~~~~~D~vVhGdD~~~~~--~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~ 190 (418)
T PLN02406 126 YAITEEFMNKLFNEYNIDYIIHGDDPCLLP--DGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL 190 (418)
T ss_pred cccchHHHHHHHHHhCCCEEEECCCccccC--CchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 98887776 489999999999987543 57789999999999999999999999999999985
No 11
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.96 E-value=6.1e-29 Score=227.15 Aligned_cols=160 Identities=37% Similarity=0.570 Sum_probs=142.8
Q ss_pred CCCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCC--CCCCHHHHHHHHhhccCccccc
Q 025533 13 DTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK--TVMTEDERYESLRHCKWVDEVI 90 (251)
Q Consensus 13 ~~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~--pv~s~~ER~e~l~~~k~VD~Vi 90 (251)
+..|.+.-++||++|.|||||.||+.+|+.|+.++ ++|||||.+|+.+..+||. |+|+..||...|.+|||||+|+
T Consensus 191 G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg--dyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVdeVv 268 (358)
T KOG2803|consen 191 GREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG--DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDEVV 268 (358)
T ss_pred CCCCCCCCcEEEEcCchhhhccchHHHHHHHHhcc--CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccceEE
Confidence 34455556699999999999999999999999996 7999999999999999985 8999999999999999999999
Q ss_pred cCCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 025533 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (251)
Q Consensus 91 ~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~l~rg 170 (251)
+++||.++.++++.+++|.|++|..+.+. ...|.|..++..|.+.++.....++|+.|++||..++..|.+||.+++
T Consensus 269 vGaP~~v~s~~i~~~~~~~v~~g~~~~~~---~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~~Ye~Rn~kk~ 345 (358)
T KOG2803|consen 269 VGAPYEVTSEFIKLFNIDKVAHGTIPDFR---DPSDPYADPKRRGIFEEADSGSDLTTELIVERIISNRQAYEARNQKKE 345 (358)
T ss_pred EcCchhccHHHHHhcCceEEEEecccccc---CccCccccchhhcchhhcCCcccccHHHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999843332 234578889999999888877779999999999999999999999999
Q ss_pred CCccccC
Q 025533 171 YSRKDLG 177 (251)
Q Consensus 171 ~~~~~l~ 177 (251)
.+..+++
T Consensus 346 ~k~~~~~ 352 (358)
T KOG2803|consen 346 GKEAPLN 352 (358)
T ss_pred hcccchh
Confidence 8877654
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.95 E-value=1.6e-27 Score=197.90 Aligned_cols=136 Identities=28% Similarity=0.278 Sum_probs=116.5
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccchHH
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQE 100 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it~~ 100 (251)
.+|++.|+||++|.||+++|++|++++ +.++|++++|+.....+++|++|.+||+++|++|+|||.|++. |+....+
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~ 81 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALE 81 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHH
Confidence 469999999999999999999999996 6899999999876655556899999999999999999999874 3344689
Q ss_pred HHHhcCCCEEEeCCCcccccCC---CCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHHHhhH
Q 025533 101 FLDKHQIDFVAHDSLPYADASG---AGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDYN 160 (251)
Q Consensus 101 ~l~~~~iD~vv~G~d~~~~~~~---~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~~~~ 160 (251)
|+++++++++++|.|+.+|..+ .....++.|+++| ++.++ +++++|||+|++||+++|+
T Consensus 82 fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~~ 144 (144)
T cd02172 82 IIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDELD 144 (144)
T ss_pred HHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhcC
Confidence 9999999999999999887543 1123478899886 66777 9999999999999999884
No 13
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.95 E-value=1.7e-27 Score=194.29 Aligned_cols=133 Identities=41% Similarity=0.613 Sum_probs=117.0
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccchH
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it~ 99 (251)
|++|++.|+||++|.||+.+|++|++.+ ++++|||++|+...+.|+.|+++.+||++++++|++||.+++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 6789999999999999999999999996 78999999998766566668999999999999999999999988887544
Q ss_pred HHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcC--ccCCCChHHHHHHHHH
Q 025533 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK--RTDGISTSDIIMRIVK 157 (251)
Q Consensus 100 ~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~--rt~giSTT~Ii~rI~~ 157 (251)
.+.+++||++++|+|+.+|..+ ...|+.+++.|.++.++ ++.++|||.|+++|++
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~~~--~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGVDE--EEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCCcc--hhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 4577899999999999887543 44789999999888888 8899999999999964
No 14
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.95 E-value=2.2e-27 Score=197.05 Aligned_cols=131 Identities=26% Similarity=0.345 Sum_probs=114.2
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCccccccCCCccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~i 97 (251)
+.+|++.|+||++|.||+++|++|++.+ +.++|||++|+++..+++ .|+++.+||++++++|+|||.|++.+++.
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~- 87 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG--DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT- 87 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC--CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC-
Confidence 4579999999999999999999999996 679999999999887765 47999999999999999999999865554
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHHH
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
..+|++.+++|++++|+|+.+.. ...++.++++| ++..+|+++++|||+|++||++
T Consensus 88 ~~~fi~~l~~~~vv~G~d~~~~~----~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~ 144 (144)
T TIGR02199 88 PEELIGELKPDILVKGGDYKVET----LVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCCCc----chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence 47899999999999999877632 12367788885 9999999999999999999963
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.94 E-value=2.2e-26 Score=185.97 Aligned_cols=123 Identities=31% Similarity=0.445 Sum_probs=105.4
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccchHHHH
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFL 102 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it~~~l 102 (251)
|++.|+||++|.||+++|++|++++ ++++|||++|+.....+..|+++.+||++++++|+|||.|++..||....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5899999999999999999999996 78999999999765545568999999999999999999998888887666778
Q ss_pred HhcCCCEEEeCCCcccccCCCCchHHHHHHHc-C-eEEEcCccCCCChHHHHHHH
Q 025533 103 DKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-G-KFKETKRTDGISTSDIIMRI 155 (251)
Q Consensus 103 ~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~-G-~~~~~~rt~giSTT~Ii~rI 155 (251)
+.++||++++|+|+. | .++.+++. | ++..+++++++|||.||+.|
T Consensus 79 ~~~~~~~vv~G~D~~------g--~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE------G--KFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred HHcCCCEEEECCCcc------c--hHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 899999999999872 2 24566654 3 77888999999999999865
No 16
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.94 E-value=8e-26 Score=182.84 Aligned_cols=128 Identities=30% Similarity=0.383 Sum_probs=109.4
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccchH
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~it~ 99 (251)
|++|++.|+||++|.||+.+|++|++++ ++|+|+|++|+.....+..|++|.++|++++++|++||++++..+|....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 6789999999999999999999999996 68999999997532222247999999999999999999998766766556
Q ss_pred HHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHH
Q 025533 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 100 ~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
+.+++++|+++++|.|+. | .++.+++.|+++.++++.++|||.||+.|.+
T Consensus 79 ~~~~~l~~~~vv~G~d~~------g--~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWE------G--KFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHHHhCCCEEEECCCCc------c--hHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 667889999999999762 2 4678999999999999999999999999864
No 17
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.90 E-value=3.9e-23 Score=198.61 Aligned_cols=132 Identities=25% Similarity=0.313 Sum_probs=113.2
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCccccccCCCccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~i 97 (251)
.++|++.|+||++|.||+++|++|++++ ++|+|||++|+.+..+|| +|++++++|.+.+++|++||+|++.+ ...
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~--~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~ 416 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLG--DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT 416 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhC--CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence 4689999999999999999999999996 789999999999987785 58999999999999999999998743 334
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHH
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
..+++++++||++++|.|+.+... .+.+...+..|++.++++++++|||+|++||.+
T Consensus 417 ~~~~~~~~~~d~vv~G~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~~ 473 (473)
T PRK11316 417 PQRLIAEILPDLLVKGGDYKPEEI---AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIRQ 473 (473)
T ss_pred HHHHHHHhCCCEEEECCCCCCCcc---ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHhC
Confidence 578999999999999998765431 224555556689999999999999999999963
No 18
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=4.6e-22 Score=187.75 Aligned_cols=129 Identities=27% Similarity=0.418 Sum_probs=111.9
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCcccccc---CCC
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIP---DAP 94 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~---~~p 94 (251)
+++|++.||||++|.||+.+|++|+++| |.||||++||.+++++|| ||+.+++.|+..|.++..||.|++ +.|
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~edTP 409 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDEDTP 409 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCCCH
Confidence 3489999999999999999999999996 999999999999999997 699999999999999999999997 444
Q ss_pred ccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHc-CeEEEcCccCCCChHHHHHHHHHh
Q 025533 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-GKFKETKRTDGISTSDIIMRIVKD 158 (251)
Q Consensus 95 ~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~-G~~~~~~rt~giSTT~Ii~rI~~~ 158 (251)
.++++..+||++|.|.|+-.+. -.|. +.+..+ |++..++..+++|||.|+++|.+.
T Consensus 410 ----~~LI~~~~PdilVKGgDy~~~~-i~g~---~~v~~~GG~v~~i~f~~g~STt~ii~ki~~~ 466 (467)
T COG2870 410 ----EELIEAVKPDILVKGGDYKIEK-IVGA---DIVEAYGGEVLLIPFEEGKSTTKIIEKIRAK 466 (467)
T ss_pred ----HHHHHHhCcceEEccCCCChhh-ccch---hhhhhcCCeEEEEecccCCcHHHHHHHHhcc
Confidence 5889999999999999766532 2332 245555 599999999999999999999754
No 19
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.84 E-value=3.1e-20 Score=158.98 Aligned_cols=149 Identities=21% Similarity=0.195 Sum_probs=115.0
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCC-CeEEEEEecCcccccc----c-CCCCCCHHHHHHHHhhccCccccccCCCcc
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPN-TYLLVGCCNDETTHKF----K-GKTVMTEDERYESLRHCKWVDEVIPDAPWV 96 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~-d~LIVgV~sD~~~~~~----K-g~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~ 96 (251)
|++.|+||++|.||+.+|++|++++.. ...+|++++|+++... + ..|+++.++|++++++++ ||.+++- |+.
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~-~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVL-PFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEe-CCC
Confidence 789999999999999999999998631 2458889999887532 2 246999999999999998 9999862 221
Q ss_pred ------chHHHHHh----cCCCEEEeCCCcccccCCCCch--HHHHHHHcC-eEEEcCc----cCCCChHHHHHHHHHhh
Q 025533 97 ------VTQEFLDK----HQIDFVAHDSLPYADASGAGKD--VYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKDY 159 (251)
Q Consensus 97 ------it~~~l~~----~~iD~vv~G~d~~~~~~~~g~d--~y~~lk~~G-~~~~~~r----t~giSTT~Ii~rI~~~~ 159 (251)
-..+|++. .+++.+++|.|+.+|..+.|+- .-+.+++.| .+..+++ +..+|||.||+.|.++.
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGD 159 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCC
Confidence 12344443 3799999999999998766641 223345556 6777776 46899999999999999
Q ss_pred HHHHHHHhhcCCCc
Q 025533 160 NQYVMRNLDRGYSR 173 (251)
Q Consensus 160 ~~y~~r~l~rg~~~ 173 (251)
.+.|.+.|-+-|+-
T Consensus 160 i~~an~lLg~~y~~ 173 (180)
T cd02064 160 VELANELLGRPYSI 173 (180)
T ss_pred HHHHHHHcCCCcEE
Confidence 99999999887753
No 20
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.82 E-value=1.3e-19 Score=167.45 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=117.7
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcccccc---c--CCCCCCHHHHHHHHhhccCccccccCCCc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKF---K--GKTVMTEDERYESLRHCKWVDEVIPDAPW 95 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~---K--g~pv~s~~ER~e~l~~~k~VD~Vi~~~p~ 95 (251)
.|++.|+||++|.||+++|++|++.+....+ .|++++|+++... + .+++++.+||++.+++++ ||.+++ -|+
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~-~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLV-LPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEE-ecC
Confidence 6999999999999999999999998632233 6788999988653 1 246999999999999999 999986 222
Q ss_pred c------chHHHHH-----hcCCCEEEeCCCcccccCCCCchHHHHHHHc----C-eEEEcCc----cCCCChHHHHHHH
Q 025533 96 V------VTQEFLD-----KHQIDFVAHDSLPYADASGAGKDVYEFVKAA----G-KFKETKR----TDGISTSDIIMRI 155 (251)
Q Consensus 96 ~------it~~~l~-----~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~----G-~~~~~~r----t~giSTT~Ii~rI 155 (251)
. -..+|++ .++++.+++|.|+.+|..+.| .++.|+++ | .+..++. +..+|||.||+.|
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G--~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I 170 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAG--DFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQAL 170 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCC--CHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHH
Confidence 1 1234554 489999999999999977666 35666654 4 5666654 5799999999999
Q ss_pred HHhhHHHHHHHhhcCCCc
Q 025533 156 VKDYNQYVMRNLDRGYSR 173 (251)
Q Consensus 156 ~~~~~~y~~r~l~rg~~~ 173 (251)
.++....|.+.|-|-|+-
T Consensus 171 ~~G~i~~A~~lLg~~y~~ 188 (305)
T PRK05627 171 AEGDLELANKLLGRPYSI 188 (305)
T ss_pred HcCCHHHHHhhhcCCCce
Confidence 999999999999988764
No 21
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.82 E-value=4.4e-20 Score=155.21 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=96.4
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCcccccc--------
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIP-------- 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~-------- 91 (251)
|++|++.|+|||+|.||+.+|++|+.++ ++|+|||++|+...++|+.|+++.++|++||+.+ ++.+.+
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~--~~~~~~~~~~~i~~ 76 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKF--LKAVEYDREYEIVK 76 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHH--HHhcCCCCcEEEEe
Confidence 4579999999999999999999999995 7999999999877666667899999999999943 333322
Q ss_pred -CCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC----eEEEcCc-----cCCCChHHHHHHHHHhh
Q 025533 92 -DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR-----TDGISTSDIIMRIVKDY 159 (251)
Q Consensus 92 -~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G----~~~~~~r-----t~giSTT~Ii~rI~~~~ 159 (251)
.+++..+. . .++|++++|++.+.+ +...-+..++.| +++.++. +..+|||.||+++.+..
T Consensus 77 i~d~~gp~~---~-~~~d~ivvs~et~~~----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~ 146 (153)
T PRK00777 77 IDDPYGPAL---E-DDFDAIVVSPETYPG----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEH 146 (153)
T ss_pred ccccCCCcc---c-cCCCEEEEChhhhhh----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhccc
Confidence 34444322 1 359999999976543 223444556677 5566665 67899999999987643
No 22
>PRK07143 hypothetical protein; Provisional
Probab=99.77 E-value=1e-17 Score=153.33 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=114.2
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC--CCCCCHHHHHHHHhhccCccccccCCCcc--
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWV-- 96 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg--~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~-- 96 (251)
..|++.|+||++|.||+.+|++|++.+ ..++|...++|... .++ .++++.++|++.+++++ +|.+++- |++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~~vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~~G-vd~~~~~-~F~~~ 90 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAKESN--DEIVIVIFKNPENL-PKNTNKKFSDLNSRLQTLANLG-FKNIILL-DFNEE 90 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHHHCC--CcEEEEEeCChHHh-cccCcccCCCHHHHHHHHHHCC-CCEEEEe-CCCHH
Confidence 468999999999999999999999874 66666555544321 122 24899999999999998 7887751 221
Q ss_pred ---c-hHHHHHh---cCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCc----cCCCChHHHHHHHHHhhHHHHH
Q 025533 97 ---V-TQEFLDK---HQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKDYNQYVM 164 (251)
Q Consensus 97 ---i-t~~~l~~---~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~r----t~giSTT~Ii~rI~~~~~~y~~ 164 (251)
+ ..+|++. ++++.+++|.|+.+|..+.|+ ++.|++.+ .+..++. ...||||.||+.|.++..+.|.
T Consensus 91 ~a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G~--~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G~i~~A~ 168 (279)
T PRK07143 91 LQNLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASWN--ADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFGDIELLN 168 (279)
T ss_pred HhCCCHHHHHHHHHhcCCCEEEECCCcccCCCCCCC--HHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcCCHHHHH
Confidence 1 2455554 799999999999999887773 67899887 6666653 4589999999999999999999
Q ss_pred HHhhcCCCc
Q 025533 165 RNLDRGYSR 173 (251)
Q Consensus 165 r~l~rg~~~ 173 (251)
++|-|-|+-
T Consensus 169 ~lLGr~y~i 177 (279)
T PRK07143 169 SLLLYNYSI 177 (279)
T ss_pred HHcCCCcEE
Confidence 999987764
No 23
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.75 E-value=1.5e-17 Score=141.62 Aligned_cols=123 Identities=23% Similarity=0.333 Sum_probs=92.5
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcc-c---cccCCCcc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD-E---VIPDAPWV 96 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD-~---Vi~~~p~~ 96 (251)
++++.|+|||||.||+.++++|++.| |+|+|+|++++..+ |.++.++.+||++|++ +++.++ . +++.....
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~~--k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~ 76 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQESH--TLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIE 76 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 47899999999999999999999997 89999999887643 4456778899999996 677764 3 22211121
Q ss_pred chHHHHHhc------CCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcC---ccCCCChHHHHHHHHHhhH
Q 025533 97 VTQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK---RTDGISTSDIIMRIVKDYN 160 (251)
Q Consensus 97 it~~~l~~~------~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~---rt~giSTT~Ii~rI~~~~~ 160 (251)
..+....+ .+|+|+.|. +. ....+++.| ++..+| |+ ++|+|.||++|.++-+
T Consensus 77 -~~~~w~~~v~~~~p~~D~vf~~~-~~---------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~~~ 138 (165)
T TIGR01527 77 -RNSIWVSYVESMTPPFDVVYSNN-PL---------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNGED 138 (165)
T ss_pred -HHHHHHHHHHHhCCCCCEEEECC-HH---------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcCCC
Confidence 23344444 789999884 22 355788888 777777 77 8999999999998644
No 24
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.75 E-value=1.4e-17 Score=140.20 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=96.3
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCccccccCCCccch
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD~Vi~~~p~~it 98 (251)
|+++++.|+|||+|.||+.++++|++.+ |+|+|++++++. | +|+.+.++|++|++. ++.+|.+.+......+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~~~~----k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAINPS----K-KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECCCCC----C-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 5689999999999999999999999997 899999988752 3 478999999999995 8989988775444568
Q ss_pred HHHHHhcCCCEEEeCCCcccccCCCCchHHHHH--HHcC----eEEEcCc-c--CCCChHHHHHHHHHhh
Q 025533 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFV--KAAG----KFKETKR-T--DGISTSDIIMRIVKDY 159 (251)
Q Consensus 99 ~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~l--k~~G----~~~~~~r-t--~giSTT~Ii~rI~~~~ 159 (251)
.+.++.+++++++.|.+...++. ...+.+ .+.| ..+.+.. . ..+|||.||++|..+.
T Consensus 74 ~~~~~~~~~~~~~~gl~~w~d~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g~ 139 (159)
T PRK00168 74 VDFAREVGATVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLGG 139 (159)
T ss_pred HHHHHHcCCCEEEecCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcCC
Confidence 89999999999999975444331 111111 1111 1222222 2 3699999999997553
No 25
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.74 E-value=1.1e-17 Score=134.34 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=93.8
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccC-cccccc-CCC---cc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKW-VDEVIP-DAP---WV 96 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~-VD~Vi~-~~p---~~ 96 (251)
+|++.|+|||+|.||+.++++|++.+ ++.++|++++++.... +..++++.++|+++++.+.. +|.+++ +.+ ..
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 47899999999999999999999997 5889999998865332 13468999999999999875 666654 211 11
Q ss_pred c----hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHc--C-eEEEcCcc---CCCChHHHHHH
Q 025533 97 V----TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA--G-KFKETKRT---DGISTSDIIMR 154 (251)
Q Consensus 97 i----t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~--G-~~~~~~rt---~giSTT~Ii~r 154 (251)
. ....+..++++++++|.|+.++..+.++ +.+++. + .++..++. ..+|||.||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~---~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFGKNASYN---KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccCCchhhh---HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 1 1245566799999999999987644332 233333 3 56666665 58999999864
No 26
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.70 E-value=1.1e-16 Score=147.18 Aligned_cols=147 Identities=15% Similarity=0.148 Sum_probs=112.4
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcccccc-cC---CCCCCHHHHHHHHhhccCccccccCCCcc-
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKF-KG---KTVMTEDERYESLRHCKWVDEVIPDAPWV- 96 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~-Kg---~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~- 96 (251)
|++.|+||++|.||+.+|++|++.+....+ .+.+++|+++... ++ .++++.+||.++++.++ ||.+++- |+.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~-~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVV-VFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEe-CCCH
Confidence 579999999999999999999976422222 7888999988764 21 23899999999999998 9988761 211
Q ss_pred ----ch-HHHH-----HhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-----eEEEcCc---cCCCChHHHHHHHHHh
Q 025533 97 ----VT-QEFL-----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-----KFKETKR---TDGISTSDIIMRIVKD 158 (251)
Q Consensus 97 ----it-~~~l-----~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-----~~~~~~r---t~giSTT~Ii~rI~~~ 158 (251)
++ .+|+ +.+++..+++|.|+.+|..+.|+ .+.|++.| .+..++. ...||||.||+.|.++
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~--~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGD--FLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCC--HHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 11 2343 34689999999999999887773 56777764 2333332 3579999999999999
Q ss_pred hHHHHHHHhhcCCCc
Q 025533 159 YNQYVMRNLDRGYSR 173 (251)
Q Consensus 159 ~~~y~~r~l~rg~~~ 173 (251)
..+.|.+.|-|-|+-
T Consensus 157 ~i~~A~~lLGr~y~i 171 (288)
T TIGR00083 157 DLELANKLLGRPYFI 171 (288)
T ss_pred CHHHHHHhhhhhhcc
Confidence 999999999887764
No 27
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.69 E-value=4.2e-17 Score=131.70 Aligned_cols=127 Identities=26% Similarity=0.277 Sum_probs=86.1
Q ss_pred EEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccc---------------
Q 025533 24 YADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE--------------- 88 (251)
Q Consensus 24 ~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~--------------- 88 (251)
+++|+|||+|.||+.+|++|++.++.+ ++|+|.++..+.+. ++++++.++|++|++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~-~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~ 78 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDED-LVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKK 78 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSES-EEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccc-cccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhh
Confidence 589999999999999999999998322 57778888766542 2479999999999998766655
Q ss_pred -------cccCCC-------ccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHH
Q 025533 89 -------VIPDAP-------WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIM 153 (251)
Q Consensus 89 -------Vi~~~p-------~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~ 153 (251)
++++.. |.-..++++.++++++.++.++..... ..+.+......+ .+........+|||+||+
T Consensus 79 ~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~ 156 (157)
T PF01467_consen 79 YPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETI--SDDEILEKYPLGIIFILDPPRNEISSTEIRE 156 (157)
T ss_dssp STSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEE--EHCHHHHHTTCEEEEEEEGGGTTSSHHHHHH
T ss_pred ccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchh--hhccccccccceeEEEecCCCCccCHHHHhc
Confidence 455555 655678888899999888754332110 112233333333 445556667799999998
Q ss_pred H
Q 025533 154 R 154 (251)
Q Consensus 154 r 154 (251)
|
T Consensus 157 ~ 157 (157)
T PF01467_consen 157 R 157 (157)
T ss_dssp H
T ss_pred C
Confidence 6
No 28
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=147.98 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=96.9
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc--cCccccc---cCCCcc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC--KWVDEVI---PDAPWV 96 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~--k~VD~Vi---~~~p~~ 96 (251)
+|++.|+||+||.||..+|++|+.++ ++|||||++|+...++|.+| .|+++|+++|++. ++++.+. +++|+.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG--DEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC--CEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 59999999999999999999999985 89999999999988777667 9999999999984 5666433 267776
Q ss_pred chHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC----eEEEcCc---c--CCCChHHHHHHHHHh
Q 025533 97 VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR---T--DGISTSDIIMRIVKD 158 (251)
Q Consensus 97 it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G----~~~~~~r---t--~giSTT~Ii~rI~~~ 158 (251)
.+. ...++|+++++.+.+.+ +..+-+..++.| +++.++. . ..+|||.|++.-++.
T Consensus 79 pt~---~~~~~d~IVVS~ET~~~----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~ 142 (322)
T PRK01170 79 NTL---YEEDYEIIVVSPETYQR----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG 142 (322)
T ss_pred CCc---ccCCCCEEEEecccccc----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence 433 24689999999877664 233444566777 4455443 2 347999998865543
No 29
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.68 E-value=2.8e-16 Score=145.32 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=119.0
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCccccccc-C-C-C--CCCHHHHHHHHhhccCcccccc--
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKFK-G-K-T--VMTEDERYESLRHCKWVDEVIP-- 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~K-g-~-p--v~s~~ER~e~l~~~k~VD~Vi~-- 91 (251)
...|++.|+||++|+||+.+|++|++....+.+ .+.++++|++.++- . . | +++.++|++.++.++ ||.+++
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~ 93 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD 93 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence 457999999999999999999999977654555 88899999998873 2 1 2 899999999999998 998876
Q ss_pred -CCCcc--chH----HHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC----eEEEcCc--c--CCCChHHHHHHHH
Q 025533 92 -DAPWV--VTQ----EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR--T--DGISTSDIIMRIV 156 (251)
Q Consensus 92 -~~p~~--it~----~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G----~~~~~~r--t--~giSTT~Ii~rI~ 156 (251)
+..+. -.. .+++.++++++++|.|+.+|..+.|+ .+.|+..| .+..++. . ..||||.||+.+.
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~--~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~ 171 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGN--AELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALR 171 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCC--HHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHh
Confidence 21111 112 45568899999999999999877763 55677766 3555554 2 2599999999999
Q ss_pred HhhHHHHHHHhhcCCC
Q 025533 157 KDYNQYVMRNLDRGYS 172 (251)
Q Consensus 157 ~~~~~y~~r~l~rg~~ 172 (251)
++..+.|.+.|-|-|+
T Consensus 172 ~gdl~~A~~lLG~py~ 187 (304)
T COG0196 172 EGDLEEANKLLGRPYS 187 (304)
T ss_pred cCCHHHHHHhcCCCeE
Confidence 9999999999988776
No 30
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.67 E-value=5.1e-16 Score=130.01 Aligned_cols=127 Identities=20% Similarity=0.155 Sum_probs=93.9
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCccccccCCCccchHH
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVTQE 100 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD~Vi~~~p~~it~~ 100 (251)
++++.|+|||+|.||+.++++|++.+ |.|+|++++++. | .++.+.++|++|++. ++.++.+.+..-...|.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~~----k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNPS----K-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCC----C-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 36899999999999999999999997 899999987752 3 478999999999995 788888776443356789
Q ss_pred HHHhcCCCEEEeCCCcccccCCCCchHHHHHH--HcC----eEEEcCcc---CCCChHHHHHHHHHhh
Q 025533 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEFVK--AAG----KFKETKRT---DGISTSDIIMRIVKDY 159 (251)
Q Consensus 101 ~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk--~~G----~~~~~~rt---~giSTT~Ii~rI~~~~ 159 (251)
.++.++.+++++|.|...++. .....+. +.| ..+.+..+ ..+|||.||+++..+.
T Consensus 74 ~l~~l~~~~~i~G~d~~~~~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g~ 137 (153)
T cd02163 74 FARKHGANVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFGG 137 (153)
T ss_pred HHHHcCCCEEEECCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcCC
Confidence 999999999999976555431 1111111 111 11222222 2599999999998764
No 31
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.65 E-value=1.5e-15 Score=128.61 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=86.7
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcc----cc--cc-CC
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD----EV--IP-DA 93 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD----~V--i~-~~ 93 (251)
++++.|+|||||.||+.++++|++.+ |+|+|+|+++..++ +..+.++.++|++|++ ++..+| .| ++ ++
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~--~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESH--TLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 36899999999999999999999997 89999998876553 2345689999999999 677665 23 32 22
Q ss_pred CccchHHHHHhc------CCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCcc--CCCChHHHHHHHHHh
Q 025533 94 PWVVTQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRT--DGISTSDIIMRIVKD 158 (251)
Q Consensus 94 p~~it~~~l~~~------~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt--~giSTT~Ii~rI~~~ 158 (251)
. .. .+...++ .+|+++.|.+ |. -+.+.+.| .+..+|++ .++|+|.||+.|.++
T Consensus 77 ~-~~-~~~w~~~v~~~vp~~div~~g~~-~~---------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~~ 138 (163)
T cd02166 77 I-ER-NSLWVSYVESLTPPFDVVYSGNP-LV---------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLMLGG 138 (163)
T ss_pred C-Cc-hHHHHHHHHHHCCCCCEEEECch-HH---------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHHcC
Confidence 2 11 2223333 5798888753 21 23456778 55677874 489999999998743
No 32
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.61 E-value=7.5e-15 Score=123.10 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=86.5
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc-cCccccccCCCccchHH
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWVDEVIPDAPWVVTQE 100 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~-k~VD~Vi~~~p~~it~~ 100 (251)
++++.|+|||+|.||+.++++|++.+ |.|+++++.++. | .+..+.++|++|++.+ ..-+.+.+..--..|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~p~----k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKNPS----K-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCCCC----C-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 47899999999999999999999997 899999986542 3 3678999999999954 33233322111135789
Q ss_pred HHHhcCCCEEEeCCCcccccCCCCchHHHHHH---H--cC-eEEEcCcc---CCCChHHHHHHHHHhh
Q 025533 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEFVK---A--AG-KFKETKRT---DGISTSDIIMRIVKDY 159 (251)
Q Consensus 101 ~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk---~--~G-~~~~~~rt---~giSTT~Ii~rI~~~~ 159 (251)
.++.++.++++.|.+-+.++. ...+.+. . .+ ..+.+..+ ..+|||.||+++..+.
T Consensus 74 t~~~l~~~~~i~G~~~~~~~~----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~ 137 (155)
T TIGR01510 74 YAKELGATFIVRGLRAATDFE----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFGG 137 (155)
T ss_pred HHHHcCCCEEEecCcchhhHH----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcCC
Confidence 999999999999976554331 0111111 0 01 11222222 3799999999998764
No 33
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.60 E-value=5.4e-16 Score=130.87 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=86.0
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCC-CeEEEEEecCcccccccC--C---CCCCHHHHHHHHhhccCcccccc-C
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPN-TYLLVGCCNDETTHKFKG--K---TVMTEDERYESLRHCKWVDEVIP-D 92 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~-d~LIVgV~sD~~~~~~Kg--~---pv~s~~ER~e~l~~~k~VD~Vi~-~ 92 (251)
...|++.|+||++|+||+.+|++|++.+.. +...+++++++++....+ . .++|.+||.+.++.++ ||.+++ +
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G-vd~~~~~~ 83 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG-VDYVIVIP 83 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT-ESEEEEE-
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC-CCEEEEec
Confidence 346999999999999999999999988633 334888999998866532 1 3999999999999998 998875 2
Q ss_pred -CC---ccchHHHHH-----hcCCCEEEeCCCcccccCCCCchHHHHHHHcC-----eEEEcCc----cCCCChHH
Q 025533 93 -AP---WVVTQEFLD-----KHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-----KFKETKR----TDGISTSD 150 (251)
Q Consensus 93 -~p---~~it~~~l~-----~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-----~~~~~~r----t~giSTT~ 150 (251)
.+ ..-..+|++ ++++..+++|.|+.+|..+.| ..+.|+++| .+..++. ...||||.
T Consensus 84 F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G--~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 84 FTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSG--DVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEE--EHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred chHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCC--CHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 11 112345555 468999999999999987766 366777765 4555543 45789884
No 34
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.58 E-value=2.9e-14 Score=118.59 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=88.7
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCccccccCCC-ccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAP-WVV 97 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~~~p-~~i 97 (251)
|++++++|+|||+|.||+.++++|.++| |+|+|+++.++. | .+.++.++|+++++ .++..+.|.+... -++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np~----K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINPD----K-SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCCC----C-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 5689999999999999999999999998 899999998752 4 36899999999998 5565555544322 257
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHH-----HHcC---eEEEc---CccCCCChHHHHHHH
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFV-----KAAG---KFKET---KRTDGISTSDIIMRI 155 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~l-----k~~G---~~~~~---~rt~giSTT~Ii~rI 155 (251)
+.++.++++.++++.|-.... +-.|+.- +... +.+.+ +....+|||.|++-.
T Consensus 74 ~v~~~~~~~a~~ivrGlR~~~------DfeyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~ 136 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARNNI------DFQYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKK 136 (140)
T ss_pred HHHHHHHCCCeEEEEecCCCc------cHHHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHH
Confidence 789999999999999974322 1234432 1221 22222 234588999987654
No 35
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.57 E-value=7.1e-15 Score=105.14 Aligned_cols=65 Identities=43% Similarity=0.676 Sum_probs=57.2
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE 88 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~ 88 (251)
++++.|+|||+|.||+.++++|++.+ +.++|+|.+|+.....|..|+++.++|.++++.|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 47999999999999999999999997 488999999877666664589999999999999987764
No 36
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.54 E-value=5.5e-14 Score=118.27 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCccccccCCCccch
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAPWVVT 98 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~~~p~~it 98 (251)
|++++++|+|||+|.||+.++++|.++| |+|+|||..+|. | +|.++.+||.++++ ..+..+.|-+..--++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np~----K-~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINPS----K-KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCCC----c-CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 6789999999999999999999999999 899999999873 3 58999999999999 45666666654344578
Q ss_pred HHHHHhcCCCEEEeCC
Q 025533 99 QEFLDKHQIDFVAHDS 114 (251)
Q Consensus 99 ~~~l~~~~iD~vv~G~ 114 (251)
.++.+++++.+++.|.
T Consensus 75 vd~ak~~~a~~ivRGL 90 (159)
T COG0669 75 VDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHcCCCEEEEec
Confidence 8999999999999997
No 37
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=118.28 Aligned_cols=124 Identities=20% Similarity=0.300 Sum_probs=83.9
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCcc----ccc--c--C
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVD----EVI--P--D 92 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD----~Vi--~--~ 92 (251)
++++.|+|||||.||+.++++|++.+ |+|+|+|++....+ +.++.++.++|++|++. +...+ .+. + +
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~~--~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQESH--TLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 58999999999999999999999986 89999997654322 22456899999999994 43221 221 1 1
Q ss_pred CC-ccchHHHHHhc--CCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcC--ccCCCChHHHHHHHHHhh
Q 025533 93 AP-WVVTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--RTDGISTSDIIMRIVKDY 159 (251)
Q Consensus 93 ~p-~~it~~~l~~~--~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~--rt~giSTT~Ii~rI~~~~ 159 (251)
.+ +..-...+... .+|+++.|. +| ....+.+.| .++.++ ....+|+|+||++|.++.
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~-~y---------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g~ 140 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGN-PL---------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEGD 140 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECC-hH---------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcCC
Confidence 11 11112333333 568888885 22 233456777 556666 456899999999997654
No 38
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.52 E-value=1.8e-13 Score=126.30 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=99.3
Q ss_pred CCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCcccccc-----
Q 025533 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP----- 91 (251)
Q Consensus 18 ~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD~Vi~----- 91 (251)
+-.+++.+.|+|||+|.||+.++++|.+.+ +.++|.+... ..+.++.++|++|++. +...+.+.+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~-------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE-------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC-------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 334678999999999999999999999998 4555555432 1367899999999994 543222211
Q ss_pred ------CCC-cc--------------chHHHH----HhcCCCEEEeCCCcccccCCCCchHHHHHHH---cC-eEEEcCc
Q 025533 92 ------DAP-WV--------------VTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKA---AG-KFKETKR 142 (251)
Q Consensus 92 ------~~p-~~--------------it~~~l----~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~---~G-~~~~~~r 142 (251)
.-| |- -..+|+ +++++..+++|.|+.+|..+.|+ ...++. .| .+..+++
T Consensus 183 l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~--~~l~~~~~~~gf~v~~v~~ 260 (297)
T cd02169 183 YIISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYN--QTMQEELLSPAIEVIEIER 260 (297)
T ss_pred eeeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhH--HHHHHhcccCCCEEEEecc
Confidence 111 00 112333 45799999999999999887775 233333 24 4555543
Q ss_pred ----cCCCChHHHHHHHHHhhHHHHHHHhhc
Q 025533 143 ----TDGISTSDIIMRIVKDYNQYVMRNLDR 169 (251)
Q Consensus 143 ----t~giSTT~Ii~rI~~~~~~y~~r~l~r 169 (251)
...||||.||+.|.++..+-+.+.|=.
T Consensus 261 ~~~~g~~ISST~IR~~l~~G~v~~A~~lLp~ 291 (297)
T cd02169 261 KKYDGQPISASTVRQLLKEGNLEEIAKLVPE 291 (297)
T ss_pred cccCCcEEcHHHHHHHHHcCCHHHHHHhCCH
Confidence 468999999999999999998887743
No 39
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.52 E-value=4.5e-14 Score=117.66 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=85.3
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-CCCCCHHHHHHHHhhc-cCc----c-ccc-cCC
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRHC-KWV----D-EVI-PDA 93 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-~pv~s~~ER~e~l~~~-k~V----D-~Vi-~~~ 93 (251)
+|++.|+||++|.||+.+|.+|++++. ++++|||++|+.....+. .++++.++|+++|+.+ ... . +++ +++
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 378999999999999999999999974 789999999984432222 2589999999999953 222 1 122 377
Q ss_pred CccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHH-HHcC----eEEEcC------ccCCCChHHHHH
Q 025533 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFV-KAAG----KFKETK------RTDGISTSDIIM 153 (251)
Q Consensus 94 p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~l-k~~G----~~~~~~------rt~giSTT~Ii~ 153 (251)
|++.+.. .-.+|++|+....+.+. ...+.. ++.| .++.++ -...+|||.||+
T Consensus 80 ~~Gpt~~---~~~~d~lVVS~ET~~~~-----~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT---DPDLEAIVVSPETYPGA-----LKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc---CCCCCEEEEcHHHhhhH-----HHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 8875443 24689999987665532 233333 3456 333332 346899999985
No 40
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.50 E-value=1.7e-13 Score=118.10 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=91.6
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccccc-CCCCCCHHHHHHHHhhc-cCc------ccccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK-GKTVMTEDERYESLRHC-KWV------DEVIP 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~K-g~pv~s~~ER~e~l~~~-k~V------D~Vi~ 91 (251)
...|++.|+||++|.||..+|.+|..++ .+.++||+++|+.....+ ...+.+.++|++.|+.. ..+ +-+-+
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~~i 97 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAEPI 97 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 3469999999999999999999999987 357999999999754322 13599999999999853 211 12224
Q ss_pred CCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHH-HHcC----eEEEcC------ccCCCChHHHHHHHHHhh
Q 025533 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFV-KAAG----KFKETK------RTDGISTSDIIMRIVKDY 159 (251)
Q Consensus 92 ~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~l-k~~G----~~~~~~------rt~giSTT~Ii~rI~~~~ 159 (251)
++||+.+.. .-.+|++|++...+.+. ...... ++.| .++.++ -...+|||.||+++.+.-
T Consensus 98 ~D~~Gpt~~---~~~~d~LVVS~ET~~g~-----~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~~ 168 (177)
T PLN02388 98 IDPYGPSIV---DENLEAIVVSKETLPGG-----LSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEKA 168 (177)
T ss_pred cCCCCCccc---CCCCCEEEEcHhHhhhH-----HHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHHH
Confidence 788886432 35789999998766542 223333 2345 233221 146899999999987654
No 41
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.49 E-value=1.2e-13 Score=119.07 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=80.7
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc-cC--cc--cccc----CC
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KW--VD--EVIP----DA 93 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~-k~--VD--~Vi~----~~ 93 (251)
+++.|+|||||.||+.++++|++.+ ++|+|+|++.+..+. + ++.++.+||++|++.+ .. +| .|.+ +.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~~-~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTARN-I-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCCC-C-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 6899999999999999999999998 699999988754332 2 2579999999999964 32 12 2211 22
Q ss_pred -----Cccc-----hHHHHHhcCCCEEEeCCCcccccCCCCchHHH-HHHHcCeEEEcCccCCCChHHHHHHHHH
Q 025533 94 -----PWVV-----TQEFLDKHQIDFVAHDSLPYADASGAGKDVYE-FVKAAGKFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 94 -----p~~i-----t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~-~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
.|.- .+.+ -..++|+++.|.+... +..|. .+.+.| +..++..+.+|+|.||+++..
T Consensus 78 ~~~~~~W~~~v~~~v~~~-~~~~~~i~~~g~~kd~------~~~~~~lfpe~~-~~~~p~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEI-AGGSASVGLVGHRKDA------SSYYLRSFPQWD-YLEVPNYPDLNATDIRRAYFE 144 (181)
T ss_pred CCChHHHHHHHHHhChHh-hCCCCcEEEeCCccCC------CccceeecCCcC-eecCccccccCHHHHHHHHHh
Confidence 2431 1111 1125688888853211 11121 222334 336666678999999999986
No 42
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.49 E-value=1.9e-13 Score=128.04 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=90.2
Q ss_pred CCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCcc--ccc----
Q 025533 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVD--EVI---- 90 (251)
Q Consensus 18 ~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD--~Vi---- 90 (251)
.++.++++.|+|||||.||+.++++|++.+ |+|+|++++....+..+ ..++.+||++|++. ++.+| .|.
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~~--~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSIK--NPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcCC--CCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 456789999999999999999999999998 89999998765443333 46999999999995 45443 221
Q ss_pred cCC-----Cccch-HHHHH---hcCCCEEEeCCCcccccCCCCchHHH-HHHHcCeEEEcCccCCCChHHHHHHHHHhhH
Q 025533 91 PDA-----PWVVT-QEFLD---KHQIDFVAHDSLPYADASGAGKDVYE-FVKAAGKFKETKRTDGISTSDIIMRIVKDYN 160 (251)
Q Consensus 91 ~~~-----p~~it-~~~l~---~~~iD~vv~G~d~~~~~~~~g~d~y~-~lk~~G~~~~~~rt~giSTT~Ii~rI~~~~~ 160 (251)
++. .|.-. ...+. ..++|+++.|.+.- ++..|. .+.+.|.+ .++..+++|+|+||++|..+-.
T Consensus 80 ~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~------~~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~~~ 152 (340)
T PRK05379 80 RDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD------ASSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEGRI 152 (340)
T ss_pred CCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC------CChHHHHhccccccc-cCCcccccCccHHHHHHHcCCC
Confidence 122 24311 11121 14789999986431 112333 33455544 6667789999999999987554
No 43
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.46 E-value=7.7e-13 Score=114.25 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=93.1
Q ss_pred ccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccccc-----------CC
Q 025533 26 DGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP-----------DA 93 (251)
Q Consensus 26 ~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~-----------~~ 93 (251)
.-+|||+|.||+.++++|.+.++ .++|++.+. + .+.++.++|++|++ ++...+.|.+ ..
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d--~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~ 75 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECD--WVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATF 75 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC--ceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccC
Confidence 34899999999999999999984 445555443 1 35789999999999 4553322211 11
Q ss_pred C--c------------c-chHHHH----HhcCCCEEEeCCCcccccCCCCchHHHHHHHc---C-eEEEcCc----cCCC
Q 025533 94 P--W------------V-VTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAA---G-KFKETKR----TDGI 146 (251)
Q Consensus 94 p--~------------~-it~~~l----~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~---G-~~~~~~r----t~gi 146 (251)
| + . -..+|+ +++++..+++|.|+.+|..+.|+ .+.|++. | ++..++| +..+
T Consensus 76 ~~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~--~~~L~~~~~~g~~v~~I~r~~~~g~~i 153 (182)
T smart00764 76 PSYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYN--QTMKQTLLSPAIEVVEIERKKANGQPI 153 (182)
T ss_pred hhhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccC--HHHHHHHhhCCCEEEEEecccCCCcEE
Confidence 1 1 0 122343 46799999999999999888774 4555554 4 5666666 5579
Q ss_pred ChHHHHHHHHHhhHHHHHHHhhc
Q 025533 147 STSDIIMRIVKDYNQYVMRNLDR 169 (251)
Q Consensus 147 STT~Ii~rI~~~~~~y~~r~l~r 169 (251)
|||.||+.|.++..+.+.+.|-.
T Consensus 154 SST~IR~~L~~G~v~~a~~lLP~ 176 (182)
T smart00764 154 SASTVRKLLKEGNLEELAKLVPE 176 (182)
T ss_pred CHHHHHHHHHcCCHHHHHHhCCH
Confidence 99999999988887766665543
No 44
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.45 E-value=9.6e-13 Score=111.08 Aligned_cols=127 Identities=19% Similarity=0.260 Sum_probs=84.1
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCccccc------cCCC-
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVI------PDAP- 94 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi------~~~p- 94 (251)
+++.|+|||+|.||+.++++|++.+ |+|+|++++.+..+ ..++.++.++|++|++ ++..-+.+. .+.|
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~--~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~ 77 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRD--DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE 77 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccc--ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence 6889999999999999999999997 89999999887321 1246789999999999 455423221 1333
Q ss_pred ----ccchH----HHHHhc---CCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcC--c-cCCCChHHHHHHHHHhh
Q 025533 95 ----WVVTQ----EFLDKH---QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--R-TDGISTSDIIMRIVKDY 159 (251)
Q Consensus 95 ----~~it~----~~l~~~---~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~--r-t~giSTT~Ii~rI~~~~ 159 (251)
|..-. ..+.+. .+|+++.|.+ +.. ..+......| .+..++ | ...+|+|.||+...+.+
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~-~~~------~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w 150 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEE-YEA------AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYW 150 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEccC-cch------hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHH
Confidence 42111 222222 6788888863 321 1221234455 454432 3 46899999999877655
Q ss_pred H
Q 025533 160 N 160 (251)
Q Consensus 160 ~ 160 (251)
+
T Consensus 151 ~ 151 (158)
T cd02167 151 Y 151 (158)
T ss_pred H
Confidence 4
No 45
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.44 E-value=2.8e-12 Score=111.50 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=68.4
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-CCCCCHHHHHHHHh-hccCcccccc-----
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIP----- 91 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-~pv~s~~ER~e~l~-~~k~VD~Vi~----- 91 (251)
+|+++++.|+|||+|.||+.++++|++.++.+.+++.++..+. .|. +...+.++|++|++ ++...+.+.+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 4678999999999999999999999998866888877776652 233 35889999999999 5555444432
Q ss_pred ---CCCcc-chHHHHHhcCCC---EEEeCCCccc
Q 025533 92 ---DAPWV-VTQEFLDKHQID---FVAHDSLPYA 118 (251)
Q Consensus 92 ---~~p~~-it~~~l~~~~iD---~vv~G~d~~~ 118 (251)
..+|+ .|.+.+++..|+ ++++|.|...
T Consensus 80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~ 113 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARYPDVELVFIIGADALA 113 (203)
T ss_pred hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh
Confidence 22333 233444554565 5788887443
No 46
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.40 E-value=3.8e-12 Score=109.61 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=64.9
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-ccCcccccc--------C
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP--------D 92 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k~VD~Vi~--------~ 92 (251)
++++.|+|||+|.||+.+++.|++.++.|.|+|.++.++. .|+.+..+.++|++|++. +.....+.+ .
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 3689999999999999999999999877899887776642 244568899999999994 443333322 1
Q ss_pred CCcc-chHHHHHhcCCC---EEEeCCCccc
Q 025533 93 APWV-VTQEFLDKHQID---FVAHDSLPYA 118 (251)
Q Consensus 93 ~p~~-it~~~l~~~~iD---~vv~G~d~~~ 118 (251)
..++ .|.+.+++..++ ++++|.|...
T Consensus 78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~l~ 107 (192)
T cd02165 78 PSYTIDTLEELRERYPNAELYFIIGSDNLI 107 (192)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEcHHHhh
Confidence 1222 233444444443 4677887554
No 47
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.39 E-value=1e-12 Score=110.16 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=93.1
Q ss_pred CCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc----cCc-cccc-c
Q 025533 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC----KWV-DEVI-P 91 (251)
Q Consensus 18 ~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~----k~V-D~Vi-~ 91 (251)
-++..|.+.|+||.+|.||..+|+.|..++ +.+++|++||+.+.++|..++.|++.|++-|... +.- ++++ +
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEe
Confidence 355679999999999999999999999995 6899999999999887767899999999888743 211 2233 3
Q ss_pred CCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHH-HcC----eEEEcCc-----cCCCChHHHHHH
Q 025533 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVK-AAG----KFKETKR-----TDGISTSDIIMR 154 (251)
Q Consensus 92 ~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk-~~G----~~~~~~r-----t~giSTT~Ii~r 154 (251)
++|++.|.+ .-.+|++|+....|.++ -....+. +.| .++.++. ...+|||.|+.-
T Consensus 81 ~Dp~G~t~~---~~~~e~iVVS~ET~~~A-----l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 81 DDPYGPTVE---DPDFEAIVVSPETYPGA-----LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred cCCCCCCCC---cCceeEEEEccccchhH-----HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 888886544 24678899887666543 1233333 457 4555543 458999998754
No 48
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.36 E-value=1.4e-11 Score=110.98 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=70.1
Q ss_pred CCCCCCCCCC-eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCc--
Q 025533 11 STDTAPSDRP-VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWV-- 86 (251)
Q Consensus 11 ~~~~~~~~r~-~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~V-- 86 (251)
.+.-+|..++ +++++.|+|||+|.||+.+.++|.+.+.-|.+++..+.++. .| .+..+.++|++|++ +++..
T Consensus 12 ~~~~~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~~~~~ 87 (243)
T PRK06973 12 AEPAPPLARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAASLVL 87 (243)
T ss_pred CCCCCCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHHhccC
Confidence 3333444454 46899999999999999999999999877898888877653 23 46779999999999 45422
Q ss_pred -------ccccc---CCCccc-hHHHHHhcC-CC---EEEeCCCccc
Q 025533 87 -------DEVIP---DAPWVV-TQEFLDKHQ-ID---FVAHDSLPYA 118 (251)
Q Consensus 87 -------D~Vi~---~~p~~i-t~~~l~~~~-iD---~vv~G~d~~~ 118 (251)
+..-+ ...|++ |...+++.. ++ +++.|.|-..
T Consensus 88 ~~~~~~v~~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~ 134 (243)
T PRK06973 88 PGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLV 134 (243)
T ss_pred CCceEEEeHhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHh
Confidence 21111 223432 444454433 55 5788987544
No 49
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.34 E-value=9.1e-12 Score=116.52 Aligned_cols=135 Identities=18% Similarity=0.115 Sum_probs=88.5
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCC-CCCCHHHHHHHHh-hccCcccccc------
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLR-HCKWVDEVIP------ 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~-pv~s~~ER~e~l~-~~k~VD~Vi~------ 91 (251)
|++++++|+|||+|.||+.++++|.+.++-|.+++..+.++- .|.. +..+.++|++|++ ++...+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p---~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINP---FKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 568899999999999999999999998767888887776552 2432 3555699999998 4554333322
Q ss_pred --CCCcc-chHHHHHhcCCC---EEEeCCCcccccCCCCchHHHHHHHcCeEEEcCc--------------------cCC
Q 025533 92 --DAPWV-VTQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKR--------------------TDG 145 (251)
Q Consensus 92 --~~p~~-it~~~l~~~~iD---~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~r--------------------t~g 145 (251)
...|+ .|...+++..|+ +++.|.|....-. ... .++.+-+...++.++| ...
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~-~W~-~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~ 155 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFK-KWK-NIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLN 155 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcc-ccc-CHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccc
Confidence 12233 245555555565 6788987554321 111 2344444444444444 136
Q ss_pred CChHHHHHHHHHhh
Q 025533 146 ISTSDIIMRIVKDY 159 (251)
Q Consensus 146 iSTT~Ii~rI~~~~ 159 (251)
||||+||+++.++.
T Consensus 156 iSST~IR~~~~~~~ 169 (342)
T PRK07152 156 ISSTKIRKGNLLGK 169 (342)
T ss_pred cCHHHHHHHHHcCC
Confidence 99999999998763
No 50
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.34 E-value=1.2e-11 Score=107.00 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=63.3
Q ss_pred EEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-CCCCCHHHHHHHHh-hccCcccccc--------CC
Q 025533 24 YADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIP--------DA 93 (251)
Q Consensus 24 ~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-~pv~s~~ER~e~l~-~~k~VD~Vi~--------~~ 93 (251)
++.|+|||+|.||+.++++|++.++.|.+++..+.++- .|. ....+.++|++|++ ++...+.+.+ ..
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 36899999999999999999999877888777776652 232 34589999999999 5654443332 12
Q ss_pred Ccc-chHHHHHhcCCC---EEEeCCCccc
Q 025533 94 PWV-VTQEFLDKHQID---FVAHDSLPYA 118 (251)
Q Consensus 94 p~~-it~~~l~~~~iD---~vv~G~d~~~ 118 (251)
.++ .|...+++..++ ++++|.|-..
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~ 106 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALR 106 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhh
Confidence 233 244555554454 4677887443
No 51
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.34 E-value=1.9e-11 Score=106.98 Aligned_cols=135 Identities=17% Similarity=0.097 Sum_probs=92.4
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-CCCCCHHHHHHHHh-hccCccc-----ccc
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDE-----VIP 91 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-~pv~s~~ER~e~l~-~~k~VD~-----Vi~ 91 (251)
.|+++++.|+|||+|.||+.+.++|.+.++-|.|+...+..+- .|. ++..+.++|++|++ +++..+. ..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p---~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPP---HKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCC---CCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 5788999999999999999999999999988887776666542 233 46899999999999 6765443 222
Q ss_pred ---CCCcc-chHHHHH-hcCCCE---EEeCCCcccccCCCCchHHHHHHHcCeEEEcCccC-------------------
Q 025533 92 ---DAPWV-VTQEFLD-KHQIDF---VAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTD------------------- 144 (251)
Q Consensus 92 ---~~p~~-it~~~l~-~~~iD~---vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~------------------- 144 (251)
...|+ .|.+.++ ++++|. ++.|.|-...-. .-. .++.+.+...|+..+|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~-~W~-~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~ 156 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLP-KWY-DWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLD 156 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhh-hhh-hHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEcc
Confidence 22233 3455555 778874 677876443211 011 244555556666555421
Q ss_pred ----CCChHHHHHHHHHh
Q 025533 145 ----GISTSDIIMRIVKD 158 (251)
Q Consensus 145 ----giSTT~Ii~rI~~~ 158 (251)
.+|||.|++++..+
T Consensus 157 ~~~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 157 LPRLDISSTEIRERIRRG 174 (197)
T ss_pred CccccCchHHHHHHHhCC
Confidence 59999999998765
No 52
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=105.32 Aligned_cols=130 Identities=11% Similarity=0.021 Sum_probs=79.5
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCc--ccccc-----
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWV--DEVIP----- 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~V--D~Vi~----- 91 (251)
|++++++|+|||+|.||+.++++++ .+ |.+++..+...-. + ++..+.++|++|++ ++... +.+.+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~--d~v~~vP~~~~~~---~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLS-HF--DLVLLVPSIAHAW---G-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhh-cC--CEEEEEECCCCcc---c-CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 3578999999999999999999964 33 8888877663211 2 26779999999998 44432 22322
Q ss_pred -----CC-Cccc-hHHHHHhcCCC---EEEeCCCcccccCCCCchHHHHHHHcCeEEEcCccCCCChHHHHHHHHHh
Q 025533 92 -----DA-PWVV-TQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (251)
Q Consensus 92 -----~~-p~~i-t~~~l~~~~iD---~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~ 158 (251)
+. .|++ |...+++..++ +++.|.|...+-.. .. .++.+-+.-.+...++...||||.||+++..+
T Consensus 75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~-W~-~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAK-FY-KADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHH-hC-CHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 11 1321 22333322233 35668875443210 11 13344333445556777789999999999754
No 53
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.31 E-value=4.6e-12 Score=110.77 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=52.2
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhh-cc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CK 84 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~-~k 84 (251)
..++++|.|+|||+||+++|++|++.| |+|||||+|....+..+ .+++..||.+|++. +.
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~~--NPFTa~ER~~MI~~aL~ 65 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNIK--NPFLAIEREQMILSNFS 65 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCCC--CCCCHHHHHHHHHHhcc
Confidence 568999999999999999999999998 79999999976555443 57999999999995 44
No 54
>PRK13671 hypothetical protein; Provisional
Probab=99.30 E-value=1.8e-11 Score=113.15 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=70.8
Q ss_pred EccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCC-CCCHHHHHHHHhhccCcccccc-CCCccc-----
Q 025533 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV----- 97 (251)
Q Consensus 25 ~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~p-v~s~~ER~e~l~~~k~VD~Vi~-~~p~~i----- 97 (251)
+.-+|||||.||+.++++|++.++.|.+|++.+.++ ++ ||.| +++.++|++|+..++ ||.||. +.+|.+
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~q--rg~pa~~~~~~R~~ma~~~G-~DLViELP~~~a~~sAe~ 80 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-TQ--RGEIAVASFEKRKKIALKYG-VDKVIKLPFEYATQAAHI 80 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-CC--CCCCCCCCHHHHHHHHHHcC-CCEEEeccHHHHhhchHH
Confidence 344999999999999999999988888888777776 33 5655 679999999999996 999995 344432
Q ss_pred ----hHHHHHhcCCCEEEeCCC
Q 025533 98 ----TQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 98 ----t~~~l~~~~iD~vv~G~d 115 (251)
...+|..+++|.++.|..
T Consensus 81 FA~gaV~lL~~lgvd~l~FGsE 102 (298)
T PRK13671 81 FAKGAIKKLNKEKIDKLIFGSE 102 (298)
T ss_pred HHHHHHHHHHHcCCCEEEECCC
Confidence 457889999999999974
No 55
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=111.79 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCc-cccc-cc---CCCCCCHHHHHHHHhh-ccCcccccc--
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDE-TTHK-FK---GKTVMTEDERYESLRH-CKWVDEVIP-- 91 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~-~~~~-~K---g~pv~s~~ER~e~l~~-~k~VD~Vi~-- 91 (251)
.+++++.|+|||+|.||+.++++|++++ +.|+|+|++++ .... ++ .+..++.++|+++|+. ++..+.|.+
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~ 129 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHA 129 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEe
Confidence 3579999999999999999999999997 78888887765 2111 11 2358899999999995 565443322
Q ss_pred -------CCC-----cc-chHHHHHhc--CCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCc---cCCCChHHHH
Q 025533 92 -------DAP-----WV-VTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKR---TDGISTSDII 152 (251)
Q Consensus 92 -------~~p-----~~-it~~~l~~~--~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~r---t~giSTT~Ii 152 (251)
+.| |. ....++.+. ++|+++.|.+ + +.+.| ++-.| +++.++. ...||+|.||
T Consensus 130 ~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~-~------d~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR 200 (399)
T PRK08099 130 FNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEE-Q------DAPQY--EEHLGIETVLVDPKRTFMNISGTQIR 200 (399)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCC-C------ChHHH--HHhcCCceeeeccccccCCcCHHHHh
Confidence 222 21 112233332 6899888863 2 11234 45446 5555543 3579999999
Q ss_pred HHHHHhhH
Q 025533 153 MRIVKDYN 160 (251)
Q Consensus 153 ~rI~~~~~ 160 (251)
+.-.+.|+
T Consensus 201 ~~p~~~w~ 208 (399)
T PRK08099 201 ENPFRYWE 208 (399)
T ss_pred hCHHHHHH
Confidence 99877664
No 56
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.13 E-value=4.6e-11 Score=93.48 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=48.9
Q ss_pred EEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc
Q 025533 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC 83 (251)
Q Consensus 23 V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~ 83 (251)
+++.|+|||+|.||+.++++|++++ +.++++++.++... .+ .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~-~~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVK-VW-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCccc-cc-CChHHHHHHHHHHHHH
Confidence 7899999999999999999999997 78999999877532 12 2589999999999987
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.13 E-value=7.6e-10 Score=103.81 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=88.2
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccccc--CCCcc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP--DAPWV 96 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~--~~p~~ 96 (251)
.+++++.|+|||||.||+.++++|.++| |.++|+|..+ + ++.+|.++|++|++ .+...+.|.+ ..++.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~ 209 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYI 209 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCce
Confidence 3679999999999999999999999998 7777777542 1 46999999999999 4665554432 11111
Q ss_pred -----------------------chHH-----HHHhcCCCEEEeCCCcccccCCCCchHHHH-HH----H----cC-eEE
Q 025533 97 -----------------------VTQE-----FLDKHQIDFVAHDSLPYADASGAGKDVYEF-VK----A----AG-KFK 138 (251)
Q Consensus 97 -----------------------it~~-----~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~-lk----~----~G-~~~ 138 (251)
++.. +...++|..-.+|..|+... ...|.. ++ + .+ ++.
T Consensus 210 is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~----t~~yn~~m~~~~~~~~~~~~I~~~ 285 (332)
T TIGR00124 210 ISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV----TALYNQKMKYWLEEPNDAPPIEVV 285 (332)
T ss_pred eccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh----HHHHHHHHHHhhhccCCCCCcEEE
Confidence 1111 22335788888999998753 235654 33 1 12 677
Q ss_pred EcCc----cCCCChHHHHHHHHHh
Q 025533 139 ETKR----TDGISTSDIIMRIVKD 158 (251)
Q Consensus 139 ~~~r----t~giSTT~Ii~rI~~~ 158 (251)
.++| +..+|+|.||+.|.++
T Consensus 286 ~I~R~~~~~~~~SASaIR~~L~~~ 309 (332)
T TIGR00124 286 EIQRKLAAGGPISASTVRELLAKG 309 (332)
T ss_pred EEeeecCCCCeeCHHHHHHHHHcC
Confidence 7888 3468999999999654
No 58
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.10 E-value=9.3e-10 Score=102.61 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=53.1
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDE 88 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~ 88 (251)
|+++++.|+|||+|.||+.++++|++++ |+|+|++++.+. +. |.++..+.++|++||+ .+.....
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~-~~-~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFY-DS-KAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCc-Cc-cCCCCCCHHHHHHHHHHHhccCCC
Confidence 4688999999999999999999999997 899999987431 11 3357899999999998 5665555
No 59
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.08 E-value=8.9e-10 Score=98.03 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=45.6
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCe-E-EEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTY-L-LVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEV 89 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~-L-IVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~V 89 (251)
+.++.|+|||+|.||+.++++|.+.+..+. + +|.+..-|.....+.....+.++|++|++ ++...+.+
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~ 72 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWI 72 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCE
Confidence 568899999999999999999998875454 2 33221112111112145789999999999 66544433
No 60
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.06 E-value=3.6e-10 Score=96.99 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccC--cc-cccc-C-
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKW--VD-EVIP-D- 92 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~--VD-~Vi~-~- 92 (251)
+|+++++.|.|.|||.||+.++++|++.. |+|+|+|+|+...+..+ ..+|..||..|++ +++. .| .+.. .
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t~~--nPfTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHTLK--NPFTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCccccccc--CCCCccchhHHHHHHHHhcCCCceEEEEec
Confidence 67889999999999999999999999996 89999999998766544 5799999999999 4542 23 1221 1
Q ss_pred CCcc---chHHHHHhcCCCEEEeCCCcccccCCCCch-HHHHHHHcC-eEEEcCc--cCCCChHHHHHHHHHhhH
Q 025533 93 APWV---VTQEFLDKHQIDFVAHDSLPYADASGAGKD-VYEFVKAAG-KFKETKR--TDGISTSDIIMRIVKDYN 160 (251)
Q Consensus 93 ~p~~---it~~~l~~~~iD~vv~G~d~~~~~~~~g~d-~y~~lk~~G-~~~~~~r--t~giSTT~Ii~rI~~~~~ 160 (251)
..+. +-..+++..-|-+-.. |+ ++. +.....+.| ++.+.+- ....|.|.|+.+++.+..
T Consensus 78 ~d~~~n~i~v~~v~~~~p~~~~~----~~-----~n~~v~~lf~~~~~~~~~p~~f~~~e~~~t~ir~~~~~~e~ 143 (172)
T COG1056 78 FDIEYNDIWVAYVEDLVPPFDVV----YT-----WNPWVARLFHEKGEKVYYPPMFPRWEYSGTAIRRKMLGGED 143 (172)
T ss_pred CccccchhhHHHHhhcCCCcccc----CC-----CCHHHHHHHhhcCceeecCCcccccccccchHHHHhhcCcc
Confidence 1111 1123334443333211 11 121 233344566 5555442 347899999999887544
No 61
>PRK13670 hypothetical protein; Provisional
Probab=99.02 E-value=9.1e-10 Score=105.25 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=68.9
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCC-CCCCHHHHHHHHhhccCcccccc-CCCcc-
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLRHCKWVDEVIP-DAPWV- 96 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~-pv~s~~ER~e~l~~~k~VD~Vi~-~~p~~- 96 (251)
|++|-+.--|||||.||+.+|++|++.++. .++++|.+-...++ |. ++++.++|++++..++ ||.|+. +..+.
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qr--g~p~i~~~~~R~~~a~~~G-vD~vielpf~~a~ 76 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQR--GEPAIVDKWTRAKMALENG-VDLVVELPFLYSV 76 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCC--CCCCCCCHHHHHHHHHHcC-CCEEEEeCCchHh
Confidence 555666668999999999999999998755 55666666555543 43 3999999999999998 999986 22232
Q ss_pred c-hH-------HHHHhcCCCEEEeCCC
Q 025533 97 V-TQ-------EFLDKHQIDFVAHDSL 115 (251)
Q Consensus 97 i-t~-------~~l~~~~iD~vv~G~d 115 (251)
. .. .+|..++++.+++|.+
T Consensus 77 ~sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 77 QSADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CCHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 1 11 2556689999999986
No 62
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.95 E-value=1.4e-08 Score=90.74 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=45.4
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcccccccCCCCCCHHHHHHHHh-hccC
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKFKGKTVMTEDERYESLR-HCKW 85 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~ 85 (251)
.+.++.|+|||+|.||+.+++.|.+....+.+ +|++..-|.....+.....+.++|++|++ ++..
T Consensus 23 ~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~ 89 (236)
T PLN02945 23 VVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED 89 (236)
T ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC
Confidence 45777889999999999999998887644554 55444444322222135679999999998 5543
No 63
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.79 E-value=6.1e-09 Score=99.60 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=43.9
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCC-CCCHHHHHHHHhhccCcccccc-CCCccc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV 97 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~p-v~s~~ER~e~l~~~k~VD~Vi~-~~p~~i 97 (251)
|+++-+.--|+|||.||..+|++||+..+.| .||+|+|..+++ +|.| +++-..|+++-..++ ||-|+. +.+|++
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL~~G-aDLViELP~~~a~ 76 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFVQ--RGEPAIIDKWTRAEMALKNG-ADLVIELPVVYAL 76 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTSB--TSSB-SS-HHHHHHHHHHHT--SEEEE---G---
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCccc--CCCeeeCCHHHHHHHHHHcC-CCEEEECCCcccc
Confidence 5556666689999999999999999998666 567788888876 4777 999999999999888 999986 444431
Q ss_pred ---------hHHHHHhcCCCEEEeCCC
Q 025533 98 ---------TQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 98 ---------t~~~l~~~~iD~vv~G~d 115 (251)
...+|..+++|.++.|..
T Consensus 77 qsA~~FA~gaV~lL~~lgvd~l~FGsE 103 (388)
T PF05636_consen 77 QSAEYFARGAVSLLNALGVDYLSFGSE 103 (388)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 347788899999999873
No 64
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.66 E-value=3.1e-07 Score=79.31 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=90.2
Q ss_pred EccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccccc--CCCcc-----
Q 025533 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP--DAPWV----- 96 (251)
Q Consensus 25 ~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~--~~p~~----- 96 (251)
+.-+-+||++||..++++|++.+ |.|.|=|-++. +..++..+|++||+ .++..+.|.+ ..+|.
T Consensus 4 IVMNaNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aT 74 (182)
T PF08218_consen 4 IVMNANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSAT 74 (182)
T ss_pred EEEcCCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeeccc
Confidence 34467899999999999999997 78855444432 35899999999999 5776666643 22221
Q ss_pred ------------------chH-----HHHHhcCCCEEEeCCCcccccCCCCchHHH-----HHHHcC-eEEEcCc----c
Q 025533 97 ------------------VTQ-----EFLDKHQIDFVAHDSLPYADASGAGKDVYE-----FVKAAG-KFKETKR----T 143 (251)
Q Consensus 97 ------------------it~-----~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~-----~lk~~G-~~~~~~r----t 143 (251)
+.. .+...++|..-.+|..|+... ...|. +|-..| +++++|| +
T Consensus 75 FPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v----T~~YN~~M~~~Lp~~gi~v~ei~R~~~~g 150 (182)
T PF08218_consen 75 FPSYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV----TRIYNEAMKEILPPYGIEVVEIPRKEING 150 (182)
T ss_pred ChhhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH----HHHHHHHHHHhccccCCEEEEEecccCCC
Confidence 111 133456888888999988643 23454 344456 7889998 4
Q ss_pred CCCChHHHHHHHHHhhHHHHHH
Q 025533 144 DGISTSDIIMRIVKDYNQYVMR 165 (251)
Q Consensus 144 ~giSTT~Ii~rI~~~~~~y~~r 165 (251)
..||.|.+|+.|.++....++.
T Consensus 151 ~~ISAS~VR~~l~~~~~~~i~~ 172 (182)
T PF08218_consen 151 EPISASRVRKLLKEGDFEEIKK 172 (182)
T ss_pred cEEcHHHHHHHHHcCCHHHHHH
Confidence 5899999999999887665544
No 65
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.48 E-value=3.5e-07 Score=82.53 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=86.0
Q ss_pred CCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-CCCCCHHHHHHHHhh----ccC---
Q 025533 14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRH----CKW--- 85 (251)
Q Consensus 14 ~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-~pv~s~~ER~e~l~~----~k~--- 85 (251)
+.|..+-.++...|+||-+|.||--+|..|+.++ -+.|||||+.|+...+.+- .-+.+.++|++-|.. ++.
T Consensus 136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~ 214 (293)
T KOG3351|consen 136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLN 214 (293)
T ss_pred ccchhcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCce
Confidence 3444555679999999999999999999999887 5899999999997654221 138899999987764 231
Q ss_pred ccccccCCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC----eEEEc---CccCCCChHHHHHH
Q 025533 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKET---KRTDGISTSDIIMR 154 (251)
Q Consensus 86 VD~Vi~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G----~~~~~---~rt~giSTT~Ii~r 154 (251)
|+.+=+.+|++.+.. .-.++++|+....+.|+.. +-+.=-+.| .+..+ ...+.+|+|+++.-
T Consensus 215 ~~~vpi~Dp~GPt~~---d~elE~lVVS~ET~~Ga~a----VNr~R~E~glseLai~vVell~~~~kls~t~~~~~ 283 (293)
T KOG3351|consen 215 VRVVPIHDPFGPTIT---DPELEALVVSEETKTGATA----VNRKRVERGLSELAIYVVELLYDAQKLSSTENREL 283 (293)
T ss_pred EEEEecccCCCCCcc---CCcceEEEEeeccccchhh----hhHHHHHcCCchheEEEEeeccChhhcchhHHHHh
Confidence 222223577774322 2467888888766654321 111112345 23332 23346888887653
No 66
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=81.41 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=68.1
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCC-CCCHHHHHHHHhhccCccccccC-------
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIPD------- 92 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~p-v~s~~ER~e~l~~~k~VD~Vi~~------- 92 (251)
+.+=+.--|||||.||+.+|++|+..+.+|..++++..| .++ .|.| +.+..+|.++..+++ +|.||+.
T Consensus 2 ~~~Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rgepai~~k~~r~~~aL~~g-~D~VIelP~~~s~q 77 (358)
T COG1323 2 KSIGIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGEPAIGHKWERKKMALEGG-ADLVIELPLERSGQ 77 (358)
T ss_pred CceeeeeecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCCCccccHHHHHhhhhhcC-ceEEEEcceEEecC
Confidence 334444579999999999999999988666555555554 444 4655 999999999999988 9999872
Q ss_pred -CCcc--chHHHHHhcCCCEEEeCCC
Q 025533 93 -APWV--VTQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 93 -~p~~--it~~~l~~~~iD~vv~G~d 115 (251)
++|- -...++..+++|.++.|..
T Consensus 78 ~a~~fa~~av~il~~l~~~~i~fgse 103 (358)
T COG1323 78 GAPYFATRAVRILNALGGDDIAFGSP 103 (358)
T ss_pred CCchhhHHHHHHHHhcCCCeEEEeCC
Confidence 2321 2446777889999999874
No 67
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=97.99 E-value=1.1e-05 Score=74.29 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=50.0
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-----CCCCCHHHHHHHHhhccCccccccC
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-----KTVMTEDERYESLRHCKWVDEVIPD 92 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-----~pv~s~~ER~e~l~~~k~VD~Vi~~ 92 (251)
.|.+.|+ +|.||+.+|++|++.+ + .|.|+.++++..+.. .-+.+.++|.++++.++ ||.++..
T Consensus 26 ~v~tmG~---lH~GH~~Li~~a~~~a--~--~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~G-vD~v~~p 93 (281)
T PRK00380 26 LVPTMGA---LHEGHLSLVREARAEA--D--IVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAG-VDLVFAP 93 (281)
T ss_pred EEEccCc---eeHHHHHHHHHHHHhC--C--EEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcC-CCEEEeC
Confidence 3667777 9999999999999986 4 666777777766521 12789999999999997 9988763
No 68
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.89 E-value=0.00027 Score=65.68 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=92.8
Q ss_pred CCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccccc--CC
Q 025533 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP--DA 93 (251)
Q Consensus 18 ~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~Vi~--~~ 93 (251)
+..+++.+.-+-+||.+||.-+++||.+.| |.| +..|..|. ..++.++|.+++. .+.+.+.|.+ +.
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD~--------S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgs 212 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKEDS--------SLFPYEDRLDLVKKGTADLPNVTVHSGS 212 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEeccc--------ccCCHHHHHHHHHHhhccCCceEEecCC
Confidence 345677888899999999999999999997 787 55555563 4799999999998 4665555432 11
Q ss_pred Ccc-----------------------chHH-----HHHhcCCCEEEeCCCcccccCCCCchHHH-----HHHHcC-----
Q 025533 94 PWV-----------------------VTQE-----FLDKHQIDFVAHDSLPYADASGAGKDVYE-----FVKAAG----- 135 (251)
Q Consensus 94 p~~-----------------------it~~-----~l~~~~iD~vv~G~d~~~~~~~~g~d~y~-----~lk~~G----- 135 (251)
+|- +... +...++|..-.+|..|.... ...|. +|.+.+
T Consensus 213 dYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~v----T~~YNq~M~~~L~~~~~~~p~ 288 (352)
T COG3053 213 DYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRV----TAIYNQQMRYWLEDPTISAPP 288 (352)
T ss_pred CeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHH----HHHHHHHHHHHHhccCCCCCc
Confidence 110 1222 33446888888998877532 12343 566544
Q ss_pred -eEEEcCc----cCCCChHHHHHHHHHhhHHHHHH
Q 025533 136 -KFKETKR----TDGISTSDIIMRIVKDYNQYVMR 165 (251)
Q Consensus 136 -~~~~~~r----t~giSTT~Ii~rI~~~~~~y~~r 165 (251)
.+++++| ...||.|.+|+.+.++.-+.++.
T Consensus 289 I~vvei~Rk~~~~~~ISAS~VR~~l~~~~~~~ia~ 323 (352)
T COG3053 289 IEVVEIERKKYQEMPISASRVRQLLAKNDLEAIAN 323 (352)
T ss_pred eEEEEeehhhhcCCcccHHHHHHHHHhCCHHHHHh
Confidence 5778888 45899999999998876554443
No 69
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=97.82 E-value=4.3e-05 Score=70.37 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=58.0
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-----CCCCCHHHHHHHHhhccCccccccCC---
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-----KTVMTEDERYESLRHCKWVDEVIPDA--- 93 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-----~pv~s~~ER~e~l~~~k~VD~Vi~~~--- 93 (251)
.|.+.|. +|.||+.++++|++.+ +.++ |+.++++..+.. .-+.+.+++++.++.++ ||.++...
T Consensus 26 ~V~TmG~---LH~GH~~LI~~a~~~a--~~vV--vtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~G-vD~vF~p~~~~ 97 (277)
T cd00560 26 FVPTMGA---LHEGHLSLVRRARAEN--DVVV--VSIFVNPLQFGPNEDLDRYPRTLEADLALLEEAG-VDLLFAPSVEE 97 (277)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--CEEE--EEecCChhhcCCcccccccCCCHHHHHHHHHHCC-CCEEECCCHHH
Confidence 4778898 9999999999999996 5444 455555444421 12789999999999987 89886421
Q ss_pred --CccchHHHHHhcCCCEEEeCC
Q 025533 94 --PWVVTQEFLDKHQIDFVAHDS 114 (251)
Q Consensus 94 --p~~it~~~l~~~~iD~vv~G~ 114 (251)
|-.....++...++..++.|.
T Consensus 98 m~p~~f~~~~v~~~~~~~il~G~ 120 (277)
T cd00560 98 MYPEGLFSTFVDVGPLSEVLEGA 120 (277)
T ss_pred cCCCCCceEEEecCCCceEEecC
Confidence 211001122335677888899
No 70
>PLN02660 pantoate--beta-alanine ligase
Probab=97.57 E-value=0.00014 Score=67.15 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=49.0
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-----CCCCCHHHHHHHHhhccCcccccc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-----KTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-----~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
.|.+.|. +|.||+.++++|++.+ + .|.|+.++++..+.. +-+.+.++++++++.++ ||.++.
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a--~--~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~ 91 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARA--D--VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALG-VDAVFN 91 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhC--C--EEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcC-CCEEEC
Confidence 4888898 9999999999999996 5 555666666655532 12789999999999987 887765
No 71
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=97.40 E-value=0.00035 Score=64.54 Aligned_cols=62 Identities=23% Similarity=0.134 Sum_probs=47.5
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccC-----CCCCCHHHHHHHHhhccCcccccc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-----KTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg-----~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
.|.+.|+ +|.||+.++++|++.+ + .|.|+.++++..+.. +-+.+.+++.++++.++ ||.++.
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a--~--~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~ 92 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAEN--D--VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKLG-VDVVFA 92 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--C--eEEEEecCChHHhCCccccccCCCCHHHHHHHHHHcC-CCEEEC
Confidence 4778899 9999999999999996 5 444555555544431 12889999999999987 887765
No 72
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=96.91 E-value=0.0075 Score=53.70 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCeEEEEccccCCCCHHHHHHHHHHhhhC--C-CCeEEEEEecCcccccccCCCCCCHHHHHHHHh-hccCcccc
Q 025533 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSF--P-NTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEV 89 (251)
Q Consensus 18 ~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~--~-~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~-~~k~VD~V 89 (251)
..+...++.|+|.|...+|+++++-|+..- . +-.++=|+.| |..-.||.+.+.+..-|+.|++ ++..-|.+
T Consensus 6 ~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~ElAt~~Skwl 80 (234)
T KOG3199|consen 6 KTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVELATETSKWL 80 (234)
T ss_pred cceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHhhhccccce
Confidence 345567889999999999999999999653 2 2345556655 3333566568999999999999 45533333
No 73
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=96.90 E-value=0.012 Score=56.67 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=59.8
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc-cCc---ccccc-CCCc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWV---DEVIP-DAPW 95 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~-k~V---D~Vi~-~~p~ 95 (251)
++|++.=+|||+|.||..++++|....+.|.|+|-...-++ | ....+.+-|+++++.+ ... +.+++ ..|+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~~----k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~ 258 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGLT----K-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL 258 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCCC----C-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence 45777899999999999999999987445766555444432 3 2479999999999954 221 22222 1222
Q ss_pred c---------chHH-HHHhcCCCEEEeCCCc
Q 025533 96 V---------VTQE-FLDKHQIDFVAHDSLP 116 (251)
Q Consensus 96 ~---------it~~-~l~~~~iD~vv~G~d~ 116 (251)
. +... +-+.+++.+++.|.|.
T Consensus 259 em~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred HhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 1 1111 3345688999999764
No 74
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.66 E-value=0.067 Score=49.55 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=36.6
Q ss_pred ccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccccc---CCCCCCHHHHHHHHhhccCcccccc
Q 025533 28 IYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 28 ~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~K---g~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
+---+|-||+.++++|++.+ |.+||.|.-+|.--... .+-+-+.+.=+++++.++ ||.|+.
T Consensus 29 TMGaLHeGHlsLi~~A~~~~--d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~g-vD~vF~ 92 (280)
T PF02569_consen 29 TMGALHEGHLSLIRRARAEN--DVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKAG-VDAVFA 92 (280)
T ss_dssp E-SS--HHHHHHHHHHHHHS--SEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHTT--SEEE-
T ss_pred CCchhhHHHHHHHHHHHhCC--CEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhccC-CCEEEc
Confidence 55567999999999999985 88999998887532211 012466777778888776 777654
No 75
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.24 E-value=0.082 Score=52.76 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=48.0
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccccc---CCCCCCHHHHHHHHhhccCcccccc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~K---g~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
++++++ +-=-+|-||+.++++|++.+ |.+||.|.-+|.-..-. .+=+-+.+.=+++++..+ ||.|+.
T Consensus 21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~--d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~g-vd~vf~ 90 (512)
T PRK13477 21 TIGFVP-TMGALHQGHLSLIRRARQEN--DVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESAG-VDAIFA 90 (512)
T ss_pred cEEEEC-CCcchhHHHHHHHHHHHHhC--CEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhcC-CCEEEC
Confidence 344444 77789999999999999985 88999998777422110 011467777788888876 887765
No 76
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=92.80 E-value=1.9 Score=41.26 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEE-EEecCcccccccCCCCCCHHHHHHHHhhc--cCc--ccccc-CCC
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLV-GCCNDETTHKFKGKTVMTEDERYESLRHC--KWV--DEVIP-DAP 94 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIV-gV~sD~~~~~~Kg~pv~s~~ER~e~l~~~--k~V--D~Vi~-~~p 94 (251)
++|++.=+-+|+|.||..+++.|.....++.|+| -+..- .| .-=++.+-|++..+.+ .|. |.+++ .-|
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~-----~k-~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW-----TK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC-----CC-CCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 3577788999999999999999999763244433 22211 12 1257888899888865 233 55443 222
Q ss_pred cc---------c-hHHHHHhcCCCEEEeCCC
Q 025533 95 WV---------V-TQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 95 ~~---------i-t~~~l~~~~iD~vv~G~d 115 (251)
+. + ..-+-+.+++.++++|-|
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrD 261 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRD 261 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 21 1 222334579999999975
No 77
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=92.03 E-value=0.74 Score=42.72 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=45.5
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccccc---CCCCCCHHHHHHHHhhccCcccccc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIP 91 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~K---g~pv~s~~ER~e~l~~~k~VD~Vi~ 91 (251)
++++++ +---+|-||+.++++|++. +|.+||.|.-+|.-.--- .+=+-+.+.=++.++..+ ||.++.
T Consensus 23 ~Vg~VP-TMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~g-vd~vF~ 92 (285)
T COG0414 23 RVGLVP-TMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKEG-VDIVFA 92 (285)
T ss_pred EEEEEc-CCcccchHHHHHHHHHhhc--CCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhcC-CcEEeC
Confidence 355555 7778999999999999988 589999998887532100 011355555566666665 776653
No 78
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=88.80 E-value=2.7 Score=40.60 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=54.1
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhc---cC-cccccc-CCCc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC---KW-VDEVIP-DAPW 95 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~---k~-VD~Vi~-~~p~ 95 (251)
++|++.=++||.|.||-.+.+.|....++ -|+-.|-.. .| .-=.+.+-|++..+.+ .| -|.+++ .-||
T Consensus 184 k~vvafQTRNp~HraHEyl~K~Al~~vdg-llv~plVG~-----tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~ 256 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRALEKVDG-LLVHPLVGA-----TK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA 256 (397)
T ss_pred eEEEEEecCCCchHHHHHHHHHHHHhcCc-EEEEeeecc-----cc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence 57899999999999999999999998743 122222211 12 1236677777666643 22 355554 2333
Q ss_pred c---------chHHHHH-hcCCCEEEeCCC
Q 025533 96 V---------VTQEFLD-KHQIDFVAHDSL 115 (251)
Q Consensus 96 ~---------it~~~l~-~~~iD~vv~G~d 115 (251)
. +.-.+++ .+++..+++|-|
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRD 286 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRD 286 (397)
T ss_pred HhhhcCcHHHHHHHHHHhhcCCeeeeecCC
Confidence 2 2233443 468988888874
No 79
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=85.09 E-value=9.3 Score=37.09 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=54.7
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhcc--C--cccccc-CCCc
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--W--VDEVIP-DAPW 95 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k--~--VD~Vi~-~~p~ 95 (251)
+.|++.=+-+|+|.||..+.+.|.+.+ |-|++ .+.+-..| .-=++.+-|++..+++. + -+.+++ .-|+
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~--d~lll----~plvG~~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 259 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIV--DGLLL----NPLVGETK-SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA 259 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhc--CeEEE----ecCcCCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 467778899999999999999999986 43333 11111112 12588888998888652 1 133322 1122
Q ss_pred -----c----c-hHHHHHhcCCCEEEeCCC
Q 025533 96 -----V----V-TQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 96 -----~----i-t~~~l~~~~iD~vv~G~d 115 (251)
+ + ..-+-+.+++.++++|-|
T Consensus 260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrD 289 (391)
T PRK04149 260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRD 289 (391)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 1 1 223334579999999975
No 80
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=84.76 E-value=13 Score=33.26 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=49.8
Q ss_pred EEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhcc--C--cccccc-CCCcc
Q 025533 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--W--VDEVIP-DAPWV 96 (251)
Q Consensus 22 ~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k--~--VD~Vi~-~~p~~ 96 (251)
.|++.=+-+|+|.||..+++.|.+.+ ++.|+|--.-.+ .| .-=++.+-|++..+.+- | -+.|++ .-|+.
T Consensus 22 ~VvafqtrnPlHraHe~l~~~a~e~~-~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 95 (215)
T PF01747_consen 22 RVVAFQTRNPLHRAHEYLMRRALEKA-GDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLP 95 (215)
T ss_dssp SEEEEEESS---HHHHHHHHHHHHHH-TSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh-cCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCch
Confidence 35555669999999999999999986 566644322221 12 12578888988877642 1 233433 12221
Q ss_pred ---------c-hHHHHHhcCCCEEEeCCCc
Q 025533 97 ---------V-TQEFLDKHQIDFVAHDSLP 116 (251)
Q Consensus 97 ---------i-t~~~l~~~~iD~vv~G~d~ 116 (251)
+ ..-+-+.+++..+++|-|.
T Consensus 96 mr~aGPrEallhAiirkN~GcTh~IvGrdh 125 (215)
T PF01747_consen 96 MRYAGPREALLHAIIRKNYGCTHFIVGRDH 125 (215)
T ss_dssp ---SHHHHHHHHHHHHHHTT-SEEEE-TTT
T ss_pred hcccCcHHHHHHHHHHHHCCCceEEeCCcC
Confidence 1 2223345799999999853
No 81
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=82.89 E-value=2 Score=38.81 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccccccc-C--CCCCCHHHHHHHHhhccCccccc
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK-G--KTVMTEDERYESLRHCKWVDEVI 90 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~K-g--~pv~s~~ER~e~l~~~k~VD~Vi 90 (251)
+.++++++ +.-.+|-||..+++|+++. +++.+|.|.-+|.-...- . .-+-+...-+..|++++ ||.|+
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~Lg-vdvvf 93 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESLG-VDVVF 93 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhcC-ceEEE
Confidence 44566665 6778999999999999999 589999998887532210 0 00223334466677775 77664
No 82
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=76.88 E-value=41 Score=34.15 Aligned_cols=89 Identities=11% Similarity=-0.048 Sum_probs=53.4
Q ss_pred eEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhcc--C-cccccc-CCCc-
Q 025533 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--W-VDEVIP-DAPW- 95 (251)
Q Consensus 21 ~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k--~-VD~Vi~-~~p~- 95 (251)
+.|++.=+-+|+|.||..+++.|...++ ..| -+ .|.+-..| .--++.+-|++..+.+. + -|.+++ .-|+
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d-~~l--ll--~p~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~ 260 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVG-ANL--LI--HPVVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA 260 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcC-CeE--EE--ecCCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 4577788999999999999999998762 122 11 22111112 12678888998877652 1 133322 1121
Q ss_pred ----c-----chHHHHHhcCCCEEEeCCC
Q 025533 96 ----V-----VTQEFLDKHQIDFVAHDSL 115 (251)
Q Consensus 96 ----~-----it~~~l~~~~iD~vv~G~d 115 (251)
+ ...-+-+.+++.++++|-|
T Consensus 261 mryaGpreai~hAi~r~N~Gcth~ivGrd 289 (568)
T PRK05537 261 MRMAGPREALWHAIIRRNYGCTHFIVGRD 289 (568)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 1 1223334579999999965
No 83
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=66.43 E-value=24 Score=28.82 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=38.9
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHHHhh
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDY 159 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~~~ 159 (251)
..++|..+++|+++.+.+ |...|..|+++| +++..++ -+..+.++..+.+.
T Consensus 57 ~a~~l~~~gvdvvi~~~i--------G~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~g~ 108 (121)
T COG1433 57 IAELLVDEGVDVVIASNI--------GPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHcCCCEEEECcc--------CHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhcCC
Confidence 479999999999998763 445799999999 6666555 57777777766554
No 84
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=65.38 E-value=1.9 Score=42.23 Aligned_cols=28 Identities=4% Similarity=-0.128 Sum_probs=24.7
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhC
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSF 47 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~ 47 (251)
.+.+++.|+||.+|.||+.+|.++..-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 414 EDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred cchhHHHHhhcccccchhhhhhhhhhcc
Confidence 3568999999999999999999998764
No 85
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=50.02 E-value=29 Score=30.63 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeEEEEEecCc
Q 025533 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCNDE 60 (251)
Q Consensus 19 r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~LIVgV~sD~ 60 (251)
+...+|+.| .++..|+||++ +|.+.+++. |..+.-.++.|+
T Consensus 19 ~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~dd 67 (213)
T cd00672 19 GLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDL-GYKVRYVQNITD 67 (213)
T ss_pred CCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhc-CCeeEEEeecCC
Confidence 333455555 68999999974 556666665 344544444554
No 86
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=47.21 E-value=58 Score=25.68 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHHhhhHHHH
Q 025533 183 EKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAM-------------HRNEWVENADRWVA 229 (251)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~w~~~~~~~~~ 229 (251)
+-+.++...|.+||++++....+-.+++..++. |....++-+.+|-.
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~eL~~aFeeiAaRFR~ 62 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRG 62 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHhc
Confidence 445677889999999999998888888876542 55555555555543
No 87
>PLN02946 cysteine-tRNA ligase
Probab=46.96 E-value=29 Score=35.29 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeEEEEEec
Q 025533 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCN 58 (251)
Q Consensus 17 ~~r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~LIVgV~s 58 (251)
.+..+..|+.| +||..|+||++ +|.+..+.. |..+.-+.+.
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~-Gy~V~~V~ni 125 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHL-GYEVRYVRNF 125 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhc-CCcEEEEECC
Confidence 34556778877 79999999985 466666655 3444333333
No 88
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=46.05 E-value=14 Score=32.93 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=50.1
Q ss_pred ccccccCCCccchHHHHHhcCCCEEEeCCCcccccC-CCCchHHHHHHHcCeEE-E--cCccCCCChHHHHHHHHHhhHH
Q 025533 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFK-E--TKRTDGISTSDIIMRIVKDYNQ 161 (251)
Q Consensus 86 VD~Vi~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~-~~g~d~y~~lk~~G~~~-~--~~rt~giSTT~Ii~rI~~~~~~ 161 (251)
|-+++...|- +.+++++++|||.+.|..+...+. ..|-|.-..+.+..... . ..-....|...++..|+..+-.
T Consensus 8 vg~iv~~~p~--~~~vf~~~~idfCcgG~~~l~ea~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~LidyI~~~~H~ 85 (220)
T PRK10992 8 LGELALSIPR--ATALFREYDLDFCCGGKQTLARAAARKNLDIDVIEARLAALQEQPIEKDWRSAPLAELIDHIIVRYHD 85 (220)
T ss_pred HHHHHHhCcc--HHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHHHhccccCChhhCCHHHHHHHHHHHHhH
Confidence 4445555554 467899999999998886554332 12223222222221111 0 1112357889999999999999
Q ss_pred HHHHHhhc
Q 025533 162 YVMRNLDR 169 (251)
Q Consensus 162 y~~r~l~r 169 (251)
|.++++..
T Consensus 86 ~~r~~lp~ 93 (220)
T PRK10992 86 RHREQLPE 93 (220)
T ss_pred HHHHHHHH
Confidence 98888766
No 89
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=43.89 E-value=1.1e+02 Score=22.25 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=34.2
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHH
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIV 156 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~ 156 (251)
...+|...++++++.|.. |...+..|++.| +++.. ..-+..+++++++
T Consensus 45 ~~~~l~~~~v~~li~~~i--------G~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGI--------GEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCS--------CHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCC--------CHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 356777799999999873 455788999999 45543 4556777766654
No 90
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=41.65 E-value=1.4e+02 Score=26.70 Aligned_cols=57 Identities=9% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 025533 181 VKEKRLRVNMKLKKLQEKVKQQQ----ERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEE 237 (251)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~~~~ 237 (251)
+.+.+.++...+++..+.+..+. ....+.+..+..++.+|+..+...+..+-..+..
T Consensus 136 l~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 136 LEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566777777777766543 2334444456678999999998877766655543
No 91
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=41.48 E-value=48 Score=32.13 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=25.4
Q ss_pred CeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeEEEEEecC
Q 025533 20 PVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCND 59 (251)
Q Consensus 20 ~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~LIVgV~sD 59 (251)
.+.+|+.| .||+.|+||++ +|.+..+.. |..+.-+.+.|
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~-G~~V~~V~nit 55 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDA-GHDVHYVQNVT 55 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHc-CCceEEEEecC
Confidence 55677776 79999999986 456666665 34443333333
No 92
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=41.20 E-value=39 Score=33.18 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=23.5
Q ss_pred CCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeE--EEEEe
Q 025533 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYL--LVGCC 57 (251)
Q Consensus 19 r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~L--IVgV~ 57 (251)
.+..+|+.| .+|..|+||++ +|.+.+++. |..+ +.|++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~-G~~V~~v~~~t 69 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYL-GYKVTYVRNIT 69 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhc-CCceEEeecCC
Confidence 344556555 78999999986 455666654 3444 44443
No 93
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=1.2e+02 Score=29.70 Aligned_cols=188 Identities=20% Similarity=0.274 Sum_probs=93.3
Q ss_pred CeEEEEc--cccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCcccccccCCCCCCHHHHHHHHhhccCccccccCCCccc
Q 025533 20 PVRVYAD--GIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (251)
Q Consensus 20 ~~~V~~~--G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~~k~VD~Vi~~~p~~i 97 (251)
|.++|+. =+=+-+|+||+-.+...+.+-...+=++.+-.|-+. .=|-|....++|-.+-+. .|.. |
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta--~IgDpsGk~e~r~~l~~e-----~v~~---n-- 99 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATA--MIGDPSGKSEERKLLTRE-----TVLE---N-- 99 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccce--ecCCCCCCHHHHhhccHH-----HHHH---H--
Confidence 4555553 233459999998888887664322334444444432 223344555555433210 0000 0
Q ss_pred hHHHHHhcC--CC---EEEeCCCcccccCCCCchHHHHHHHcCeEEE-------------cCccCCCChHHHHHHHHHhh
Q 025533 98 TQEFLDKHQ--ID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKE-------------TKRTDGISTSDIIMRIVKDY 159 (251)
Q Consensus 98 t~~~l~~~~--iD---~vv~G~d~~~~~~~~g~d~y~~lk~~G~~~~-------------~~rt~giSTT~Ii~rI~~~~ 159 (251)
...+.+.++ +| .++.+.+|.... +....+...|+... ..+..++|-|+..=-+++.|
T Consensus 100 ~~~i~~ql~~~ld~k~~~v~ns~w~~~~-----~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay 174 (401)
T COG0162 100 AETIKKQLGKFLDNKAEFVNNSDWLKKL-----NYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY 174 (401)
T ss_pred HHHHHHHhcccCCcceEEEechHHhCcC-----CHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH
Confidence 001111111 22 455566555432 24445555553222 12234799999999999999
Q ss_pred HH-HHHHHhhcCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHH---------HHh-hhHHHH--------------HH
Q 025533 160 NQ-YVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQ---------ERV-GEKIQT--------------VA 214 (251)
Q Consensus 160 ~~-y~~r~l~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~--------------~~ 214 (251)
|- |....++=|=+-+.-|+-. .+ +|..+..... ... |.+..+ --
T Consensus 175 D~~~L~~dlq~GG~DQ~~ni~~----------gr-dl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s~~~Sp~ 243 (401)
T COG0162 175 DFVYLNKDLQLGGSDQWGNILA----------GR-DLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPY 243 (401)
T ss_pred HHHHHccchhcCChHHHHHHHH----------HH-HHHHHhCCCCeEEEEeccccCCCCCcccccCCCceEccCCCCCcH
Confidence 85 4444455555444444321 11 1111111100 000 111100 11
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 025533 215 MHRNEWVENADRWVAGFLEMF 235 (251)
Q Consensus 215 ~~~~~w~~~~~~~~~~f~~~~ 235 (251)
.+.++|++-.|+.+..|+.+|
T Consensus 244 ~~yq~~~~i~D~~~~~~~~~~ 264 (401)
T COG0162 244 DFYQYWMNIEDADVKRFLKLL 264 (401)
T ss_pred hhhhcHhcCcHHHHHHHHHHh
Confidence 278999999999999999999
No 94
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=40.41 E-value=44 Score=32.97 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=23.7
Q ss_pred CCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeE--EEEEe
Q 025533 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYL--LVGCC 57 (251)
Q Consensus 19 r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~L--IVgV~ 57 (251)
....+|+.| .+|..|+||++ ++.+..+.. |..+ +.+++
T Consensus 20 ~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~-G~~V~~v~n~t 67 (465)
T TIGR00435 20 GKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYL-GYKVQYVQNIT 67 (465)
T ss_pred CcceEEEecCccCCCcccccchHHHHHHHHHHHHHHc-CCcEEEEEeeC
Confidence 344566666 68999999986 345555554 3334 55554
No 95
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.98 E-value=20 Score=35.79 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcc--ccCCCCHHHHH------HHHHHhhhC
Q 025533 16 PSDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSF 47 (251)
Q Consensus 16 ~~~r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~ 47 (251)
..+..+..|+.| ++|+.|+||++ +|.+..+..
T Consensus 19 ~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~ 58 (490)
T PRK14536 19 IEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL 58 (490)
T ss_pred CCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 344567788888 79999999986 456666665
No 96
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=39.11 E-value=50 Score=24.02 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=32.7
Q ss_pred HhhHHHHHHHhhcCCCccccCchhHHHHHHHHHHHHHHHHHHH
Q 025533 157 KDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKV 199 (251)
Q Consensus 157 ~~~~~y~~r~l~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 199 (251)
.+|+..+...++- ....|.|--+|.++|-++..|.++.+++
T Consensus 21 ~D~DaaInAmi~~--~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 21 ADFDAAINAMIAT--GCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred hhHHHHHHHHHHh--CCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4677788888885 5567888899999999988888887765
No 97
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.68 E-value=46 Score=34.45 Aligned_cols=41 Identities=32% Similarity=0.565 Sum_probs=27.1
Q ss_pred CCCCeEEEEcc--ccCCCCHHHHH------HHHHHhh-hCCCCeE--EEEEec
Q 025533 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKK-SFPNTYL--LVGCCN 58 (251)
Q Consensus 17 ~~r~~~V~~~G--~FDlfH~GH~~------~L~qAk~-~~~~d~L--IVgV~s 58 (251)
.++.+..|+.| +||..|+||++ +|++..+ .+ |-.+ +.+|+.
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~-Gy~V~~v~nitD 108 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYF-GYDVFYVMNITD 108 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhc-CCceEEEeCCCC
Confidence 34556667766 79999999986 5667776 55 3333 555553
No 98
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=37.12 E-value=52 Score=34.47 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=27.6
Q ss_pred CCCCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeE--EEEEe
Q 025533 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYL--LVGCC 57 (251)
Q Consensus 17 ~~r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~L--IVgV~ 57 (251)
.++.+..|+.| +||..|+||++ +|.+..+.. |-.+ +.+++
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~-Gy~V~fV~NiT 294 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLREC-GYPLTYVRNIT 294 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHc-CCceEEEeCCc
Confidence 34567788888 79999999985 466666664 3344 55554
No 99
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.48 E-value=1.6e+02 Score=31.77 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=61.9
Q ss_pred hHHHHHHHc-C-eEEEcCcc--CCCChHHHHHHHHHhhHHHHHHHhhcCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 025533 126 DVYEFVKAA-G-KFKETKRT--DGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQ 201 (251)
Q Consensus 126 d~y~~lk~~-G-~~~~~~rt--~giSTT~Ii~rI~~~~~~y~~r~l~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
|.+...+++ | .+...|-+ .|+.|...++|.+ .+.|.++.|++---+-++-.+.+ ++-.+++++
T Consensus 60 D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l----------~~~g~~r~d~gRe~Fl~~~weWk---~e~~~~I~~ 126 (877)
T COG0525 60 DILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQL----------AAEGITRHDLGREEFLKKCWEWK---EESGGTIRE 126 (877)
T ss_pred HHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHH----------HHcCCCccccCHHHHHHHHHHHH---HHHHHHHHH
Confidence 444445554 6 46666654 4898887766554 34599999999554444433332 223445555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-----------ccCCCCcccc
Q 025533 202 QQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEG-----------CHKMPSGIEF 248 (251)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~~~~~-----------~~~~~~~~~~ 248 (251)
++.++|--++--.+...-=.+-|+-....|+++|++| |-..+|||++
T Consensus 127 Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd 184 (877)
T COG0525 127 QLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISD 184 (877)
T ss_pred HHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhh
Confidence 5555553332000000000223556677899999886 5677788763
No 100
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=2.1e+02 Score=27.38 Aligned_cols=65 Identities=23% Similarity=0.161 Sum_probs=39.5
Q ss_pred ccccccCCCccchHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHHH
Q 025533 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (251)
Q Consensus 86 VD~Vi~~~p~~it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (251)
||.||+.+|.. ..++++..||.=+|..-.-.- ......+++++.| +-+.++| -.|..+|++-+.+
T Consensus 93 vDaviv~Dpg~--i~l~~e~~p~l~ih~S~q~~v---~N~~~~~f~~~~G~~rvVl~r--Els~~ei~~i~~~ 158 (347)
T COG0826 93 VDAVIVADPGL--IMLARERGPDLPIHVSTQANV---TNAETAKFWKELGAKRVVLPR--ELSLEEIKEIKEQ 158 (347)
T ss_pred CCEEEEcCHHH--HHHHHHhCCCCcEEEeeeEec---CCHHHHHHHHHcCCEEEEeCc--cCCHHHHHHHHHh
Confidence 88888887864 367777787776665422221 1123456778888 3334455 4677777665544
No 101
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=34.26 E-value=36 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCCCeEEEEccc-cCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcc
Q 025533 17 SDRPVRVYADGI-YDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDET 61 (251)
Q Consensus 17 ~~r~~~V~~~G~-FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~ 61 (251)
.++++++++..+ +.+.-..++..|.++...++...+ +|+|+.|+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 456777777777 999999999999988866543334 899999863
No 102
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.21 E-value=3e+02 Score=27.20 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=69.0
Q ss_pred EccccCCCCHHHHHHHHHHhhhCCCCeEEEEEec-CcccccccCCCCCCHHHHHHHHhhccC--cc---ccccCCCcc--
Q 025533 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCN-DETTHKFKGKTVMTEDERYESLRHCKW--VD---EVIPDAPWV-- 96 (251)
Q Consensus 25 ~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~s-D~~~~~~Kg~pv~s~~ER~e~l~~~k~--VD---~Vi~~~p~~-- 96 (251)
+....|.+.. ..++|+..++.+ -..+.+|+-| ++...+.=++. .+.++-.+.++.|+. +. ..+++-|..
T Consensus 276 ~~~r~~~i~~-d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~ 352 (497)
T TIGR02026 276 INTRVTDIVR-DADILHLYRRAG-LVHISLGTEAAAQATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGFENETD 352 (497)
T ss_pred EecccccccC-CHHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCH
Confidence 3344454422 245666666654 4678889865 44333321222 344444445544331 11 123344432
Q ss_pred ----chHHHHHhcCCCEEEeC-CCcccccCCCCchHHHHHHHcCeEEE---------cCccCCCChHHHHHHHHHhhHHH
Q 025533 97 ----VTQEFLDKHQIDFVAHD-SLPYADASGAGKDVYEFVKAAGKFKE---------TKRTDGISTSDIIMRIVKDYNQY 162 (251)
Q Consensus 97 ----it~~~l~~~~iD~vv~G-~d~~~~~~~~g~d~y~~lk~~G~~~~---------~~rt~giSTT~Ii~rI~~~~~~y 162 (251)
-|.+++.++++|.+... ..|+- |...|+.+++.|.+.. +=.+.++|..+|.+.+.+.|..+
T Consensus 353 e~~~~t~~~~~~l~~~~~~~~~~tP~P-----GT~l~~~~~~~~~~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~~~f 427 (497)
T TIGR02026 353 ETFEETYRQLLDWDPDQANWLMYTPWP-----FTSLFGELSDRVEVQDYTKYNFVTPIMKPTHMPRWEILLGVKLNYIRF 427 (497)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCCC-----CcHHHHHHHhhcccCchhhccccceEeeCCCCCHHHHHHHHHHHHHHH
Confidence 45677888899876543 23443 4568888877664311 01135677777777777766543
No 103
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=33.38 E-value=83 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.1
Q ss_pred HHHHhhhHHHHHHHHH
Q 025533 219 EWVENADRWVAGFLEM 234 (251)
Q Consensus 219 ~w~~~~~~~~~~f~~~ 234 (251)
--+++|.+|+.+|...
T Consensus 15 vLe~NAe~FV~~fVQK 30 (33)
T TIGR03687 15 VLESNAEEFVRGFVQK 30 (33)
T ss_pred HHHHhHHHHHHHHHHc
Confidence 3678999999999864
No 104
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=31.45 E-value=34 Score=30.62 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHhcCCCEEEeCCCcccc-cCCCCchHHHHHHHcCeEEEcC----ccCCCChHHHHHHHHHhhHHHHHHHhhc
Q 025533 99 QEFLDKHQIDFVAHDSLPYAD-ASGAGKDVYEFVKAAGKFKETK----RTDGISTSDIIMRIVKDYNQYVMRNLDR 169 (251)
Q Consensus 99 ~~~l~~~~iD~vv~G~d~~~~-~~~~g~d~y~~lk~~G~~~~~~----rt~giSTT~Ii~rI~~~~~~y~~r~l~r 169 (251)
.+++++|++||.+-|.-.... +...|-|.-+..+++..+...+ .....+.|++|..|+..|-.+-+.+|..
T Consensus 19 ~~iFr~y~iDFCCGG~~~L~~Aa~~k~l~~~~i~a~L~~l~~~~~~~~dw~~~~~s~lIdhIi~ryH~~hReqlpe 94 (221)
T COG2846 19 AEIFRSYDIDFCCGGKVTLERAAAEKGLDIDEIEARLNALQQEPTPSKDWATAPLSELIDHIIVRYHERHREQLPE 94 (221)
T ss_pred HHHHHHcCCceecCChHHHHHHHHHcCCCHHHHHHHHHHHHhccCcccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999998766421111 1122333333344443222222 3457899999999999999988888876
No 105
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=31.16 E-value=34 Score=32.18 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeE--EEEEec
Q 025533 15 APSDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYL--LVGCCN 58 (251)
Q Consensus 15 ~~~~r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~L--IVgV~s 58 (251)
|..++.+.+|+.| ++|..|+||.+ +|.+..+.+ |-.+ +..||.
T Consensus 3 p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~-g~~V~~V~NiTD 55 (300)
T PF01406_consen 3 PLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYL-GYDVTYVMNITD 55 (300)
T ss_dssp -SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEB-
T ss_pred CCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHc-CCeEEEEEeccc
Confidence 3455667788888 79999999986 566666665 3334 777775
No 106
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=30.27 E-value=48 Score=29.88 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=47.9
Q ss_pred cccccCCCccchHHHHHhcCCCEEEeCCCccccc--CCCCchHHHHHHHcCeEE--EcCc---cCCCChHHHHHHHHHhh
Q 025533 87 DEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADA--SGAGKDVYEFVKAAGKFK--ETKR---TDGISTSDIIMRIVKDY 159 (251)
Q Consensus 87 D~Vi~~~p~~it~~~l~~~~iD~vv~G~d~~~~~--~~~g~d~y~~lk~~G~~~--~~~r---t~giSTT~Ii~rI~~~~ 159 (251)
-+|+...|- +.+.+.++++|+.+.|..+...+ ...|-|.-+.+++..... .... ....+++.+|..|+..|
T Consensus 9 geIv~~~P~--aa~VF~~~gIdfCcgg~~tLeeA~~~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~~~Lid~I~~~h 86 (224)
T PRK13276 9 ADVVTDYPK--AADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSAY 86 (224)
T ss_pred HHHHHhCcc--HHHHHHHcCCCcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHhhccccCccChhhCCHHHHHHHHHHHH
Confidence 344444554 46788999999865554332211 112333333344433221 1111 12478899999999999
Q ss_pred HHHHHHHhhc
Q 025533 160 NQYVMRNLDR 169 (251)
Q Consensus 160 ~~y~~r~l~r 169 (251)
-.|.++++..
T Consensus 87 H~~~r~~lp~ 96 (224)
T PRK13276 87 HEPLREEFKN 96 (224)
T ss_pred hHHHHHHHHH
Confidence 9999998876
No 107
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=29.92 E-value=1.9e+02 Score=22.70 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---------HHHHHHHhhhHHHHHHH
Q 025533 186 LRVNMKLKKLQEKVKQQQERVGEKIQTVAM---------HRNEWVENADRWVAGFL 232 (251)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~w~~~~~~~~~~f~ 232 (251)
-++...|.+|+++++....+-.++|..++. -=.+|..-..+....|-
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHh
Confidence 456778899999999998888888876542 11345555555555554
No 108
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=29.39 E-value=2.1e+02 Score=21.14 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=29.6
Q ss_pred hHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHH
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIM 153 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~ 153 (251)
..++|..+++|+|+.+.. |...+..|++.| +++..+. -+..++++
T Consensus 55 ~~~~l~~~~v~~vi~~~i--------G~~~~~~l~~~gI~v~~~~~---~~i~~vl~ 100 (103)
T cd00851 55 AAEFLADEGVDVVIVGGI--------GPRALNKLRNAGIKVYKGAE---GTVEEAIE 100 (103)
T ss_pred HHHHHHHcCCCEEEeCCC--------CcCHHHHHHHCCCEEEEcCC---CCHHHHHH
Confidence 356777789999998862 334688899999 5554443 24444443
No 109
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.25 E-value=58 Score=28.63 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=67.7
Q ss_pred CeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecC-ccccccc-CCCCCCHHHHHHHHhhccCcccccc-CCCcc
Q 025533 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCND-ETTHKFK-GKTVMTEDERYESLRHCKWVDEVIP-DAPWV 96 (251)
Q Consensus 20 ~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD-~~~~~~K-g~pv~s~~ER~e~l~~~k~VD~Vi~-~~p~~ 96 (251)
.+.|++.|.=|.+-.||+-+--..-..- +..+-+|+.+. ..+...| |+|-++..|.+-+-.....++.+-. -.||.
T Consensus 40 ~~~vvaf~~kdgik~~~~~~~vNg~~v~-g~~~~~Gl~~~~~ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ 118 (199)
T KOG3369|consen 40 LKVVVAFGSKDGIKVGHLVQAVNGENVN-GYILYDGLSSPRNYPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEP 118 (199)
T ss_pred cceeEEeecccccchhheeeeecccccc-cceecccccCccccccccccCCCcccccchhhhhhhhcchhheeeccCCCC
Confidence 4679999999999999975322222222 35678887653 3333334 5677888887654444444444432 24443
Q ss_pred chHHHHHhcCCCEEEeCCCcccccCCCCchHHHHHHHcC-eEEEcCccCCCChHHHHHHHHHhhHHHHHHH
Q 025533 97 VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDYNQYVMRN 166 (251)
Q Consensus 97 it~~~l~~~~iD~vv~G~d~~~~~~~~g~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~~~~~y~~r~ 166 (251)
- .-++..+-.+.--.+ +|..+ -| +|+.+-...-.-...+..+|-+-|.+|+.+|
T Consensus 119 k------sSGie~LetdtF~l~--------~~QTl--TG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKN 173 (199)
T KOG3369|consen 119 K------SSGIEVLETDTFTLH--------IFQTL--TGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKN 173 (199)
T ss_pred C------CCceEEEEeccEEEE--------EEEcc--CCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcC
Confidence 1 112222222110000 00000 13 5555433222334556778888888888765
No 110
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=29.09 E-value=36 Score=29.92 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=43.0
Q ss_pred hHHHHHhcCCCEEEeCCCccccc-CCCCchHHHHHHHcCeEEE--c----CccCCCChHHHHHHHHHhhHHHHHHHhhc
Q 025533 98 TQEFLDKHQIDFVAHDSLPYADA-SGAGKDVYEFVKAAGKFKE--T----KRTDGISTSDIIMRIVKDYNQYVMRNLDR 169 (251)
Q Consensus 98 t~~~l~~~~iD~vv~G~d~~~~~-~~~g~d~y~~lk~~G~~~~--~----~rt~giSTT~Ii~rI~~~~~~y~~r~l~r 169 (251)
+.+.+.++++|+.+.|..+...+ ...|-|.-+.+.+...... . .-....|+..|+..|+..+-.|+++++..
T Consensus 11 ~~~vf~~~gid~cc~g~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~~~~~~~~~~~~~~Lid~i~~~hH~~i~~~l~~ 89 (216)
T TIGR03652 11 AARIFRKYGIDFCCGGNVSLAEACKEKGLDPDEILAELNALQQEPENSGAKDWREAPLSELIDHIVDRHHEYLREELPE 89 (216)
T ss_pred HHHHHHHcCCCccCCCcchHHHHHHHcCCCHHHHHHHHHHHHhccccccccChhhCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 46788999999655453222111 1123344344444332211 1 11235799999999999999999988875
No 111
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.70 E-value=73 Score=23.48 Aligned_cols=33 Identities=30% Similarity=0.574 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhhH---HHHHHH-HHHHHHH
Q 025533 190 MKLKKLQEKVKQQQERVGEK---IQTVAM-HRNEWVE 222 (251)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~w~~ 222 (251)
..+++++.||+..+.+-|+- +.++++ |-.+|-+
T Consensus 6 s~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wte 42 (71)
T COG5420 6 SSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTE 42 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHH
Confidence 35778889999988887763 344433 6667754
No 112
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=27.23 E-value=2.4e+02 Score=26.98 Aligned_cols=82 Identities=18% Similarity=0.117 Sum_probs=50.0
Q ss_pred CCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeEEEEEecCccc-------------ccccCCCCCCHHHHHHHHhhccC
Q 025533 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-------------HKFKGKTVMTEDERYESLRHCKW 85 (251)
Q Consensus 19 r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~LIVgV~sD~~~-------------~~~Kg~pv~s~~ER~e~l~~~k~ 85 (251)
+|..|+..|-|= .+-.|...+ -..++|++.--..+ ++..|....+. ||-.++.++
T Consensus 93 ~p~~v~~~Gg~v--------~~~aA~~~~-~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~l~~~~-- 160 (396)
T TIGR03492 93 KGDLIVAVGDIV--------PLLFAWLSG-KPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSRR-- 160 (396)
T ss_pred cCCEEEEECcHH--------HHHHHHHcC-CCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHHhhchh--
Confidence 555666666442 455554443 35667777644333 22245555666 666666543
Q ss_pred ccccccCCCccchHHHHHhcCCCEEEeCC
Q 025533 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDS 114 (251)
Q Consensus 86 VD~Vi~~~p~~it~~~l~~~~iD~vv~G~ 114 (251)
+|.|.+..+ .+.+++.++++.+++.|.
T Consensus 161 a~~v~~~~~--~t~~~l~~~g~k~~~vGn 187 (396)
T TIGR03492 161 CLAVFVRDR--LTARDLRRQGVRASYLGN 187 (396)
T ss_pred hCEEeCCCH--HHHHHHHHCCCeEEEeCc
Confidence 567776444 467888888888888886
No 113
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=26.19 E-value=1e+02 Score=30.24 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCeEEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeEEEEEecC
Q 025533 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCND 59 (251)
Q Consensus 19 r~~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~LIVgV~sD 59 (251)
+.+.+|+.| .||..|+||++ +|.+..++. |..+.-..+.|
T Consensus 35 ~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~-G~~V~fV~nit 82 (411)
T TIGR03447 35 PEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDA-GHRVHYVQNVT 82 (411)
T ss_pred CcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhc-CCceEEeeCCC
Confidence 445566666 79999999985 466666665 34453334433
No 114
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=24.65 E-value=1.1e+02 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred EEEEcc--ccCCCCHHHHH------HHHHHhhhCCCCeEEEEEecCcc
Q 025533 22 RVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCNDET 61 (251)
Q Consensus 22 ~V~~~G--~FDlfH~GH~~------~L~qAk~~~~~d~LIVgV~sD~~ 61 (251)
.+++.| .-.++|+||+. ++.++.++. |..+.....+|++
T Consensus 21 ~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~-G~~v~~v~~~Dd~ 67 (353)
T cd00674 21 YVVASGISPSGHIHIGNFREVITADLVARALRDL-GFEVRLIYSWDDY 67 (353)
T ss_pred EEEecCCCCCCCcccCccHHHHHHHHHHHHHHHc-CCCEEEEEEEcCC
Confidence 455444 56899999986 566777765 3445444555554
No 115
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=24.45 E-value=3.5e+02 Score=22.57 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 025533 179 SYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVEN 223 (251)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 223 (251)
+||.+.+-.+.+.|++|++.+.+...+..+--..+..+...|..+
T Consensus 25 ~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~ 69 (146)
T PF08702_consen 25 DFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPR 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 355555556666677777777666665555444443344455543
No 116
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.71 E-value=4.9e+02 Score=25.33 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=62.5
Q ss_pred HHHHHHhhhCCCCeEEEEEec-CcccccccCCCCCCHHHHHHHHhhccC--c--c-ccccCCCcc------chHHHHHhc
Q 025533 38 RSLEQAKKSFPNTYLLVGCCN-DETTHKFKGKTVMTEDERYESLRHCKW--V--D-EVIPDAPWV------VTQEFLDKH 105 (251)
Q Consensus 38 ~~L~qAk~~~~~d~LIVgV~s-D~~~~~~Kg~pv~s~~ER~e~l~~~k~--V--D-~Vi~~~p~~------it~~~l~~~ 105 (251)
++|+..++.+ ...+.+|+-| ++.+.+.=++. .+.++-.+.++.++. + . ..|++-|.. -+.+++.++
T Consensus 288 e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 288 ETLKVMKENG-LRLLLVGYESGDQQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 4555555543 4678888865 44433321223 344444444443321 1 1 123344543 356778888
Q ss_pred CCCEEEeCC-CcccccCCCCchHHHHHHHcCeEEEc--------------CccCCCChHHHHHHHHHhhHH
Q 025533 106 QIDFVAHDS-LPYADASGAGKDVYEFVKAAGKFKET--------------KRTDGISTSDIIMRIVKDYNQ 161 (251)
Q Consensus 106 ~iD~vv~G~-d~~~~~~~~g~d~y~~lk~~G~~~~~--------------~rt~giSTT~Ii~rI~~~~~~ 161 (251)
+++.+.... .|+- |...|+.+++.|.+..- -.++.+|..++...+..-|..
T Consensus 366 ~~~~~~~~~l~P~P-----GT~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~~~~~~~~ 431 (472)
T TIGR03471 366 NPHTIQVSLAAPYP-----GTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDGVERFYKR 431 (472)
T ss_pred CCCceeeeecccCC-----CcHHHHHHHHCCCcCCchhhcccCCCceeeeecCCCCCHHHHHHHHHHHHHH
Confidence 888764432 3443 55688888888743210 113567777777766665554
No 117
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=23.50 E-value=1.3e+02 Score=23.98 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=6.8
Q ss_pred CeEEEEEecCcc
Q 025533 50 TYLLVGCCNDET 61 (251)
Q Consensus 50 d~LIVgV~sD~~ 61 (251)
.+-+||+.+|+.
T Consensus 103 g~~vvg~~d~~~ 114 (175)
T PF13727_consen 103 GYRVVGFVDDDP 114 (175)
T ss_dssp SEEEEEEE-S-G
T ss_pred CceEEEEEeCch
Confidence 345888887764
No 118
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=21.68 E-value=1e+02 Score=23.20 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Q 025533 188 VNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEG 238 (251)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~~~~~ 238 (251)
|+..+.++.++|+....-+.+.-+..+. ..++--+-+.-+-++++-|.++
T Consensus 16 L~~~l~dmd~kvk~mlklieedgdSfak-rAEmyy~kRp~Li~~vee~yr~ 65 (74)
T PF07765_consen 16 LQENLSDMDEKVKAMLKLIEEDGDSFAK-RAEMYYKKRPELISLVEEFYRS 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHH-hhHHHhcccHHHHHHHHHHHHH
Confidence 3455666666666654444321111111 1233344444444566666433
No 119
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.17 E-value=47 Score=33.16 Aligned_cols=28 Identities=39% Similarity=0.724 Sum_probs=22.7
Q ss_pred eEEEEcc--ccCCCCHHHHH------HHHHHhhhCC
Q 025533 21 VRVYADG--IYDLFHFGHAR------SLEQAKKSFP 48 (251)
Q Consensus 21 ~~V~~~G--~FDlfH~GH~~------~L~qAk~~~~ 48 (251)
+..|+.| +||-.|+||.+ +|++..+..+
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~G 58 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLG 58 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhC
Confidence 6788888 79999999974 7778877653
No 120
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=20.93 E-value=2.1e+02 Score=23.71 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCCCCCCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcccccccCCCCCCHHHHHHHHhh
Q 025533 11 STDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKFKGKTVMTEDERYESLRH 82 (251)
Q Consensus 11 ~~~~~~~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~~~~~Kg~pv~s~~ER~e~l~~ 82 (251)
..-=||+-|-.+|.+.|.+|+ .++..|.+-+ .|.+ ++|+.-++ .| |. .--...+.|++.+..
T Consensus 23 rmqyp~~vRiIrv~CsGrvn~------~fvl~Al~~G-aDGV~v~GC~~ge-CH-y~-~GN~ka~rR~~~lke 85 (132)
T COG1908 23 RMQYPPNVRIIRVMCSGRVNP------EFVLKALRKG-ADGVLVAGCKIGE-CH-YI-SGNYKAKRRMELLKE 85 (132)
T ss_pred cccCCCceEEEEeeccCccCH------HHHHHHHHcC-CCeEEEecccccc-ee-ee-ccchHHHHHHHHHHH
Confidence 344466677788999999997 5677777766 4655 66766555 32 32 123667889988774
No 121
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=20.14 E-value=2e+02 Score=23.48 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCCCeEEEEccccCCCCHHHHHHHHHHhhhCCCCeE-EEEEecCcc
Q 025533 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDET 61 (251)
Q Consensus 17 ~~r~~~V~~~G~FDlfH~GH~~~L~qAk~~~~~d~L-IVgV~sD~~ 61 (251)
.++++.+++.+++=+...-.+..|.+..+.++...+ +|+|+.|+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~ 69 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDI 69 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 456677888888888776666677777766643334 899999863
Done!