Query 025534
Match_columns 251
No_of_seqs 243 out of 2342
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01564 Spermine_synth: Sperm 100.0 6.2E-46 1.3E-50 320.2 22.0 216 30-250 1-220 (246)
2 PLN02823 spermine synthase 100.0 3.6E-45 7.8E-50 327.2 25.9 246 3-249 3-250 (336)
3 PRK00811 spermidine synthase; 100.0 4.7E-44 1E-48 314.7 23.7 217 28-249 2-219 (283)
4 PRK00536 speE spermidine synth 100.0 2E-44 4.4E-49 311.3 20.9 200 30-250 1-200 (262)
5 PLN02366 spermidine synthase 100.0 6.5E-44 1.4E-48 316.0 23.7 219 25-248 12-234 (308)
6 COG0421 SpeE Spermidine syntha 100.0 1.8E-43 3.8E-48 308.6 22.2 218 28-250 2-219 (282)
7 TIGR00417 speE spermidine synt 100.0 3E-40 6.5E-45 288.9 23.1 214 31-249 1-214 (270)
8 PRK01581 speE spermidine synth 100.0 1.4E-39 3.1E-44 290.4 19.8 237 5-250 50-297 (374)
9 COG4262 Predicted spermidine s 100.0 1.1E-36 2.4E-41 266.8 14.9 210 36-250 224-436 (508)
10 PRK03612 spermidine synthase; 100.0 6.4E-35 1.4E-39 276.0 21.5 215 31-250 223-444 (521)
11 KOG1562 Spermidine synthase [A 100.0 1.8E-33 3.8E-38 241.0 9.3 222 22-248 36-264 (337)
12 PRK04457 spermidine synthase; 100.0 1.1E-26 2.4E-31 202.3 20.3 181 52-245 11-198 (262)
13 COG2521 Predicted archaeal met 99.8 2.4E-17 5.2E-22 137.8 14.7 166 70-242 102-269 (287)
14 PF12847 Methyltransf_18: Meth 99.7 1.1E-16 2.4E-21 120.9 7.9 109 103-219 2-111 (112)
15 COG4123 Predicted O-methyltran 99.7 1.8E-15 3.9E-20 129.4 13.9 145 85-240 26-184 (248)
16 PF13659 Methyltransf_26: Meth 99.6 3E-15 6.5E-20 114.1 9.9 112 103-219 1-115 (117)
17 PF05175 MTS: Methyltransferas 99.6 1.8E-15 3.8E-20 123.7 6.8 109 102-219 31-140 (170)
18 PRK00121 trmB tRNA (guanine-N( 99.5 1.9E-13 4.2E-18 114.7 15.4 129 102-241 40-172 (202)
19 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.1E-13 4.5E-18 113.8 15.1 129 102-241 16-148 (194)
20 PRK00107 gidB 16S rRNA methylt 99.5 2.1E-13 4.5E-18 113.2 13.8 103 101-220 44-146 (187)
21 PRK15128 23S rRNA m(5)C1962 me 99.5 1.1E-12 2.4E-17 120.5 19.2 126 102-235 220-353 (396)
22 COG1092 Predicted SAM-dependen 99.5 5.7E-13 1.2E-17 121.4 16.0 115 102-222 217-339 (393)
23 TIGR00138 gidB 16S rRNA methyl 99.5 3.9E-13 8.6E-18 111.0 13.7 103 102-221 42-144 (181)
24 PRK15001 SAM-dependent 23S rib 99.5 2E-13 4.3E-18 124.4 12.6 130 103-246 229-358 (378)
25 PF13847 Methyltransf_31: Meth 99.5 1.1E-13 2.4E-18 110.7 8.5 106 102-219 3-110 (152)
26 COG2813 RsmC 16S RNA G1207 met 99.5 2.6E-13 5.7E-18 118.6 11.3 126 103-246 159-284 (300)
27 TIGR03533 L3_gln_methyl protei 99.5 2E-12 4.4E-17 114.0 15.7 113 102-220 121-252 (284)
28 TIGR02469 CbiT precorrin-6Y C5 99.5 4.8E-13 1E-17 102.3 10.3 105 101-219 18-122 (124)
29 COG2890 HemK Methylase of poly 99.5 1.7E-12 3.7E-17 114.1 14.9 141 69-220 80-239 (280)
30 COG4122 Predicted O-methyltran 99.5 1.3E-12 2.9E-17 110.2 13.5 104 101-217 58-164 (219)
31 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.1E-12 4.6E-17 117.5 15.2 129 102-241 122-251 (390)
32 PRK10909 rsmD 16S rRNA m(2)G96 99.5 4.8E-12 1E-16 106.0 16.2 146 59-220 12-160 (199)
33 PLN02781 Probable caffeoyl-CoA 99.4 5.2E-13 1.1E-17 114.6 10.6 104 101-217 67-176 (234)
34 PRK14966 unknown domain/N5-glu 99.4 3E-12 6.5E-17 117.3 15.8 114 101-220 250-382 (423)
35 PRK00377 cbiT cobalt-precorrin 99.4 6.8E-12 1.5E-16 104.9 16.2 122 101-241 39-161 (198)
36 PRK11036 putative S-adenosyl-L 99.4 1.4E-12 3.1E-17 113.1 12.5 106 101-218 43-148 (255)
37 COG2226 UbiE Methylase involve 99.4 2.4E-12 5.1E-17 110.1 13.4 107 101-219 50-156 (238)
38 PRK11805 N5-glutamine S-adenos 99.4 5E-12 1.1E-16 112.7 15.8 111 104-220 135-264 (307)
39 COG4106 Tam Trans-aconitate me 99.4 8.1E-13 1.8E-17 109.7 9.7 109 90-219 21-129 (257)
40 TIGR00536 hemK_fam HemK family 99.4 6.8E-12 1.5E-16 110.6 16.1 112 104-221 116-246 (284)
41 PLN02476 O-methyltransferase 99.4 1.8E-12 3.8E-17 113.4 12.1 105 101-218 117-227 (278)
42 PRK08287 cobalt-precorrin-6Y C 99.4 4.5E-12 9.6E-17 104.9 13.8 102 101-219 30-131 (187)
43 PRK14103 trans-aconitate 2-met 99.4 1.5E-12 3.3E-17 112.9 11.2 99 101-219 28-126 (255)
44 PF01596 Methyltransf_3: O-met 99.4 8.6E-13 1.9E-17 110.9 9.2 105 101-218 44-154 (205)
45 COG2242 CobL Precorrin-6B meth 99.4 8.6E-12 1.9E-16 102.0 14.7 120 101-242 33-152 (187)
46 TIGR03704 PrmC_rel_meth putati 99.4 7.8E-12 1.7E-16 108.4 15.2 123 103-240 87-230 (251)
47 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3.3E-12 7.1E-17 125.4 14.1 116 102-221 538-658 (702)
48 TIGR03534 RF_mod_PrmC protein- 99.4 1.2E-11 2.6E-16 106.4 15.9 113 101-220 86-218 (251)
49 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.2E-12 4.8E-17 111.5 10.6 108 101-219 55-164 (247)
50 PRK09489 rsmC 16S ribosomal RN 99.4 3.2E-12 6.9E-17 115.4 12.0 107 103-219 197-303 (342)
51 COG2519 GCD14 tRNA(1-methylade 99.4 5E-12 1.1E-16 107.8 12.4 122 101-245 93-216 (256)
52 TIGR02752 MenG_heptapren 2-hep 99.4 8.2E-12 1.8E-16 106.4 13.8 107 101-219 44-151 (231)
53 PRK01683 trans-aconitate 2-met 99.4 3.4E-12 7.4E-17 110.6 11.5 101 101-219 30-130 (258)
54 PRK01544 bifunctional N5-gluta 99.4 1.2E-11 2.5E-16 117.3 15.6 112 103-220 139-270 (506)
55 PF01209 Ubie_methyltran: ubiE 99.4 1.3E-12 2.8E-17 112.0 8.4 106 101-218 46-152 (233)
56 PF08241 Methyltransf_11: Meth 99.4 7.6E-13 1.7E-17 96.1 5.9 95 107-217 1-95 (95)
57 PF10672 Methyltrans_SAM: S-ad 99.4 3.9E-12 8.4E-17 111.7 11.4 127 101-235 122-252 (286)
58 PRK09328 N5-glutamine S-adenos 99.4 2.5E-11 5.4E-16 106.0 16.5 113 101-220 107-239 (275)
59 COG0742 N6-adenine-specific me 99.4 1.8E-11 3.8E-16 100.6 14.3 148 60-220 2-155 (187)
60 PRK07402 precorrin-6B methylas 99.4 1.8E-11 3.9E-16 102.1 14.5 104 101-219 39-142 (196)
61 TIGR00537 hemK_rel_arch HemK-r 99.4 1.4E-11 3.1E-16 101.2 13.3 108 101-219 18-140 (179)
62 COG2227 UbiG 2-polyprenyl-3-me 99.4 3E-12 6.5E-17 108.3 9.3 103 101-219 58-161 (243)
63 PLN02244 tocopherol O-methyltr 99.4 4.1E-12 9E-17 114.8 10.9 107 101-219 117-223 (340)
64 PLN02233 ubiquinone biosynthes 99.4 6.2E-12 1.3E-16 109.6 11.3 109 101-218 72-181 (261)
65 PF02353 CMAS: Mycolic acid cy 99.3 4.2E-12 9.1E-17 111.3 9.3 105 101-219 61-166 (273)
66 PLN02396 hexaprenyldihydroxybe 99.3 5.3E-12 1.1E-16 113.0 10.1 104 102-219 131-235 (322)
67 PRK14967 putative methyltransf 99.3 1.7E-11 3.7E-16 104.3 12.7 109 102-219 36-159 (223)
68 PLN02589 caffeoyl-CoA O-methyl 99.3 1.2E-11 2.5E-16 106.8 11.0 105 101-218 78-189 (247)
69 PRK11207 tellurite resistance 99.3 8.4E-12 1.8E-16 104.3 9.7 103 102-217 30-132 (197)
70 PF13649 Methyltransf_25: Meth 99.3 2.1E-12 4.5E-17 96.2 5.3 96 106-213 1-101 (101)
71 PLN03075 nicotianamine synthas 99.3 2E-11 4.4E-16 107.4 12.3 108 102-219 123-233 (296)
72 PLN02672 methionine S-methyltr 99.3 6.5E-11 1.4E-15 119.4 17.4 118 103-221 119-280 (1082)
73 TIGR00406 prmA ribosomal prote 99.3 8.1E-11 1.8E-15 104.0 16.1 121 101-244 158-278 (288)
74 PF03602 Cons_hypoth95: Conser 99.3 1.5E-11 3.3E-16 101.7 10.6 109 101-220 41-154 (183)
75 TIGR00080 pimt protein-L-isoas 99.3 1.4E-11 3.1E-16 104.2 10.7 102 101-220 76-178 (215)
76 PRK13944 protein-L-isoaspartat 99.3 1.4E-11 3.1E-16 103.6 10.1 101 102-219 72-173 (205)
77 TIGR00740 methyltransferase, p 99.3 5.4E-11 1.2E-15 102.2 13.5 108 101-219 52-161 (239)
78 PF02390 Methyltransf_4: Putat 99.3 3.2E-11 7E-16 100.7 11.4 126 105-241 20-149 (195)
79 PF08704 GCD14: tRNA methyltra 99.3 3.4E-11 7.3E-16 103.8 11.7 128 100-248 38-170 (247)
80 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.4E-17 97.2 2.2 99 107-215 1-99 (99)
81 PRK13942 protein-L-isoaspartat 99.3 2.8E-11 6E-16 102.4 10.9 102 101-220 75-177 (212)
82 smart00828 PKS_MT Methyltransf 99.3 1.1E-11 2.5E-16 105.1 8.4 104 104-219 1-104 (224)
83 PRK00517 prmA ribosomal protei 99.3 1.4E-10 3.1E-15 100.4 15.0 112 101-241 118-229 (250)
84 PRK10258 biotin biosynthesis p 99.3 4.4E-11 9.4E-16 103.4 11.7 99 102-219 42-140 (251)
85 TIGR00095 RNA methyltransferas 99.3 5.5E-11 1.2E-15 98.9 11.8 107 102-219 49-159 (189)
86 COG2230 Cfa Cyclopropane fatty 99.3 2.9E-11 6.4E-16 105.4 10.0 106 100-219 70-176 (283)
87 KOG2352 Predicted spermine/spe 99.3 6.3E-12 1.4E-16 115.6 6.0 138 102-248 295-441 (482)
88 PTZ00098 phosphoethanolamine N 99.3 3.4E-11 7.4E-16 105.1 10.2 105 101-219 51-156 (263)
89 COG2518 Pcm Protein-L-isoaspar 99.3 3.4E-11 7.4E-16 100.5 9.6 100 101-220 71-170 (209)
90 TIGR00446 nop2p NOL1/NOP2/sun 99.2 3.8E-10 8.3E-15 98.5 16.5 134 101-244 70-220 (264)
91 TIGR02072 BioC biotin biosynth 99.2 6.1E-11 1.3E-15 100.7 11.2 103 101-219 33-135 (240)
92 KOG1270 Methyltransferases [Co 99.2 7.1E-12 1.5E-16 107.0 5.3 102 103-219 90-195 (282)
93 PRK11873 arsM arsenite S-adeno 99.2 6.2E-11 1.4E-15 103.6 11.4 106 101-218 76-182 (272)
94 PRK14903 16S rRNA methyltransf 99.2 2.3E-10 5E-15 106.5 15.8 135 101-244 236-387 (431)
95 PRK11188 rrmJ 23S rRNA methylt 99.2 5.8E-11 1.3E-15 100.2 10.2 126 101-248 50-188 (209)
96 PRK14968 putative methyltransf 99.2 2.1E-10 4.5E-15 94.2 13.2 112 101-220 22-149 (188)
97 TIGR00477 tehB tellurite resis 99.2 5E-11 1.1E-15 99.5 9.5 102 102-217 30-131 (195)
98 PRK04266 fibrillarin; Provisio 99.2 1.4E-10 2.9E-15 99.1 12.1 128 101-243 71-204 (226)
99 PF05401 NodS: Nodulation prot 99.2 6.4E-11 1.4E-15 97.8 9.5 128 100-245 41-175 (201)
100 PHA03411 putative methyltransf 99.2 1.4E-10 2.9E-15 101.0 11.8 109 102-222 64-187 (279)
101 PRK14902 16S rRNA methyltransf 99.2 3.1E-10 6.6E-15 106.1 15.1 116 101-221 249-381 (444)
102 COG2264 PrmA Ribosomal protein 99.2 3.4E-11 7.4E-16 105.8 8.0 122 101-244 161-283 (300)
103 PRK14904 16S rRNA methyltransf 99.2 3.9E-10 8.5E-15 105.4 15.4 115 101-222 249-380 (445)
104 TIGR01177 conserved hypothetic 99.2 1.5E-10 3.3E-15 104.1 11.9 111 101-219 181-294 (329)
105 PRK10901 16S rRNA methyltransf 99.2 4E-10 8.6E-15 104.9 14.6 115 101-221 243-374 (427)
106 PF01135 PCMT: Protein-L-isoas 99.2 6.7E-11 1.5E-15 99.7 8.6 102 101-220 71-173 (209)
107 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.4E-10 3E-15 104.4 10.8 102 102-218 113-214 (340)
108 PLN02336 phosphoethanolamine N 99.2 2.9E-10 6.2E-15 107.1 13.3 105 101-219 265-369 (475)
109 PHA03412 putative methyltransf 99.2 1.5E-10 3.3E-15 98.6 10.0 103 102-217 49-160 (241)
110 PRK14901 16S rRNA methyltransf 99.2 6.3E-10 1.4E-14 103.7 15.1 116 101-221 251-386 (434)
111 PRK15068 tRNA mo(5)U34 methylt 99.2 2.7E-10 5.8E-15 102.3 11.8 105 101-218 121-225 (322)
112 PF06325 PrmA: Ribosomal prote 99.2 4.1E-11 8.9E-16 105.8 6.2 115 101-240 160-274 (295)
113 PRK12335 tellurite resistance 99.2 1.3E-10 2.8E-15 102.7 9.3 103 101-217 119-221 (287)
114 TIGR00438 rrmJ cell division p 99.2 3.3E-10 7.1E-15 93.9 11.0 124 101-246 31-167 (188)
115 PRK00216 ubiE ubiquinone/menaq 99.1 3.6E-10 7.9E-15 96.1 10.8 106 102-218 51-157 (239)
116 COG0220 Predicted S-adenosylme 99.1 6.5E-10 1.4E-14 94.7 12.1 111 104-219 50-164 (227)
117 cd02440 AdoMet_MTases S-adenos 99.1 4.2E-10 9.1E-15 81.5 9.5 103 105-218 1-103 (107)
118 PRK11705 cyclopropane fatty ac 99.1 2.8E-10 6.1E-15 104.4 10.4 101 101-219 166-267 (383)
119 PRK03522 rumB 23S rRNA methylu 99.1 7.6E-10 1.7E-14 99.0 12.9 105 102-222 173-277 (315)
120 PRK06922 hypothetical protein; 99.1 3.4E-10 7.3E-15 108.5 10.8 112 102-219 418-537 (677)
121 PRK08317 hypothetical protein; 99.1 5E-10 1.1E-14 94.9 10.6 106 101-219 18-124 (241)
122 smart00650 rADc Ribosomal RNA 99.1 6.6E-10 1.4E-14 90.5 10.8 101 102-220 13-114 (169)
123 TIGR00452 methyltransferase, p 99.1 5.6E-10 1.2E-14 99.6 11.3 106 101-219 120-225 (314)
124 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 6.8E-10 1.5E-14 93.4 11.1 104 101-218 38-142 (223)
125 PRK00312 pcm protein-L-isoaspa 99.1 4.5E-10 9.7E-15 94.7 9.9 100 101-220 77-176 (212)
126 TIGR00563 rsmB ribosomal RNA s 99.1 1.5E-09 3.3E-14 101.0 14.3 136 101-244 237-389 (426)
127 KOG1540 Ubiquinone biosynthesi 99.1 1.3E-09 2.9E-14 92.8 11.9 109 101-218 99-213 (296)
128 TIGR02085 meth_trns_rumB 23S r 99.1 1.2E-09 2.7E-14 99.9 12.6 103 102-220 233-335 (374)
129 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.6E-09 3.4E-14 101.4 12.7 103 102-221 297-402 (443)
130 TIGR03840 TMPT_Se_Te thiopurin 99.1 5.9E-10 1.3E-14 94.4 8.9 110 101-217 33-150 (213)
131 PRK05134 bifunctional 3-demeth 99.1 9.9E-10 2.2E-14 93.7 10.3 104 102-219 48-151 (233)
132 PRK13943 protein-L-isoaspartat 99.1 1.4E-09 3E-14 97.5 11.6 101 101-219 79-180 (322)
133 KOG4300 Predicted methyltransf 99.1 4.9E-10 1.1E-14 92.7 7.9 104 103-218 77-181 (252)
134 PRK11088 rrmA 23S rRNA methylt 99.1 2.7E-09 5.9E-14 93.5 13.1 94 102-219 85-181 (272)
135 PRK04338 N(2),N(2)-dimethylgua 99.1 1.6E-09 3.5E-14 99.2 11.9 100 104-219 59-158 (382)
136 TIGR01983 UbiG ubiquinone bios 99.1 1.4E-09 3E-14 92.1 10.5 105 102-219 45-149 (224)
137 PRK05785 hypothetical protein; 99.0 3.8E-09 8.2E-14 90.2 12.9 99 102-222 51-149 (226)
138 TIGR02716 C20_methyl_CrtF C-20 99.0 1.3E-09 2.8E-14 97.0 10.1 105 102-218 149-253 (306)
139 COG2263 Predicted RNA methylas 99.0 1.7E-09 3.8E-14 88.5 9.7 90 100-203 43-132 (198)
140 PTZ00146 fibrillarin; Provisio 99.0 5.6E-09 1.2E-13 91.8 13.6 128 101-243 131-265 (293)
141 TIGR00479 rumA 23S rRNA (uraci 99.0 6E-09 1.3E-13 97.1 14.5 102 102-219 292-396 (431)
142 TIGR03587 Pse_Me-ase pseudamin 99.0 1.6E-09 3.5E-14 91.1 9.5 94 101-210 42-135 (204)
143 PLN02336 phosphoethanolamine N 99.0 1.7E-09 3.7E-14 101.8 10.2 104 102-218 37-141 (475)
144 TIGR00308 TRM1 tRNA(guanine-26 99.0 3.1E-09 6.8E-14 97.0 11.1 101 104-219 46-147 (374)
145 TIGR02021 BchM-ChlM magnesium 99.0 3.5E-09 7.5E-14 89.7 10.7 102 101-217 54-156 (219)
146 TIGR03438 probable methyltrans 99.0 4.1E-09 8.9E-14 93.8 11.5 111 101-219 62-177 (301)
147 PRK11727 23S rRNA mA1618 methy 99.0 4E-09 8.8E-14 94.2 11.5 82 102-186 114-200 (321)
148 PF03848 TehB: Tellurite resis 99.0 1.5E-09 3.4E-14 90.0 8.2 104 101-218 29-132 (192)
149 KOG2899 Predicted methyltransf 99.0 3.6E-09 7.7E-14 89.6 9.7 113 102-218 58-208 (288)
150 PF13489 Methyltransf_23: Meth 99.0 2.2E-09 4.7E-14 85.5 8.0 95 101-219 21-115 (161)
151 PRK05031 tRNA (uracil-5-)-meth 99.0 1E-08 2.2E-13 93.5 13.4 100 103-220 207-321 (362)
152 KOG1271 Methyltransferases [Ge 99.0 3.1E-09 6.6E-14 86.4 8.4 112 102-220 67-182 (227)
153 TIGR02143 trmA_only tRNA (urac 99.0 1.3E-08 2.9E-13 92.4 13.6 100 103-220 198-312 (353)
154 PRK13255 thiopurine S-methyltr 99.0 2.7E-09 5.8E-14 90.7 8.4 109 101-216 36-152 (218)
155 KOG2904 Predicted methyltransf 98.9 1.4E-08 2.9E-13 87.5 11.7 117 100-220 146-286 (328)
156 PRK07580 Mg-protoporphyrin IX 98.9 2.3E-08 4.9E-13 84.9 13.0 101 101-216 62-163 (230)
157 KOG3010 Methyltransferase [Gen 98.9 4.2E-09 9.2E-14 89.1 7.9 104 102-219 33-137 (261)
158 KOG1663 O-methyltransferase [S 98.9 1.8E-08 3.9E-13 84.8 11.5 105 101-218 72-182 (237)
159 PRK06202 hypothetical protein; 98.9 7.9E-09 1.7E-13 88.3 9.2 103 101-218 59-165 (232)
160 PF02475 Met_10: Met-10+ like- 98.9 2.9E-09 6.3E-14 89.1 6.3 100 101-216 100-199 (200)
161 PLN02585 magnesium protoporphy 98.9 3.3E-08 7.2E-13 88.4 13.2 103 102-217 144-248 (315)
162 PF07021 MetW: Methionine bios 98.9 9.4E-09 2E-13 84.7 8.2 72 101-184 12-84 (193)
163 smart00138 MeTrc Methyltransfe 98.8 6.9E-09 1.5E-13 90.6 7.4 111 102-219 99-242 (264)
164 PRK01544 bifunctional N5-gluta 98.8 7.1E-08 1.5E-12 91.6 14.2 128 102-240 347-477 (506)
165 PF05185 PRMT5: PRMT5 arginine 98.8 2.8E-08 6.2E-13 92.7 9.7 105 103-217 187-295 (448)
166 PF08003 Methyltransf_9: Prote 98.8 9E-08 2E-12 84.1 11.7 113 87-219 103-219 (315)
167 PRK11933 yebU rRNA (cytosine-C 98.8 3.5E-07 7.5E-12 85.9 16.1 135 101-244 112-263 (470)
168 PF09445 Methyltransf_15: RNA 98.8 2.8E-08 6E-13 80.4 7.4 75 105-184 2-78 (163)
169 PTZ00338 dimethyladenosine tra 98.7 1.1E-07 2.3E-12 84.4 11.7 78 101-186 35-112 (294)
170 KOG3191 Predicted N6-DNA-methy 98.7 1.7E-07 3.7E-12 76.3 10.6 126 102-241 43-184 (209)
171 TIGR02081 metW methionine bios 98.7 5.3E-08 1.1E-12 81.0 7.9 92 101-211 12-104 (194)
172 COG4976 Predicted methyltransf 98.7 4.5E-09 9.7E-14 88.4 1.1 100 103-220 126-226 (287)
173 KOG1541 Predicted protein carb 98.7 7.5E-08 1.6E-12 80.6 8.1 105 103-221 51-162 (270)
174 PRK14896 ksgA 16S ribosomal RN 98.7 7.5E-08 1.6E-12 83.8 8.2 74 102-186 29-102 (258)
175 PRK13256 thiopurine S-methyltr 98.7 1.5E-07 3.3E-12 80.2 9.8 110 101-217 42-161 (226)
176 PF05724 TPMT: Thiopurine S-me 98.6 5.4E-08 1.2E-12 82.7 6.5 107 101-214 36-150 (218)
177 PF05891 Methyltransf_PK: AdoM 98.6 1E-07 2.2E-12 80.1 7.8 103 102-218 55-160 (218)
178 COG2520 Predicted methyltransf 98.6 4.6E-07 1E-11 81.4 12.1 106 101-222 187-292 (341)
179 PF00891 Methyltransf_2: O-met 98.6 8.1E-08 1.8E-12 82.5 7.1 98 101-219 99-199 (241)
180 COG2265 TrmA SAM-dependent met 98.6 3.9E-07 8.5E-12 84.7 11.6 105 102-222 293-399 (432)
181 PRK00274 ksgA 16S ribosomal RN 98.6 1.2E-07 2.6E-12 83.1 7.7 75 101-185 41-115 (272)
182 COG3963 Phospholipid N-methylt 98.6 5.4E-07 1.2E-11 72.5 10.2 107 102-222 48-159 (194)
183 KOG1661 Protein-L-isoaspartate 98.6 1.8E-07 3.9E-12 77.7 7.7 106 101-220 81-194 (237)
184 PF01170 UPF0020: Putative RNA 98.6 3.3E-07 7.2E-12 75.5 8.9 111 101-217 27-149 (179)
185 COG0030 KsgA Dimethyladenosine 98.6 5E-07 1.1E-11 78.2 9.9 74 103-186 31-106 (259)
186 COG1041 Predicted DNA modifica 98.5 5.2E-07 1.1E-11 80.7 10.0 121 88-219 185-310 (347)
187 TIGR00755 ksgA dimethyladenosi 98.5 6E-07 1.3E-11 77.9 10.1 74 101-185 28-104 (253)
188 PF10294 Methyltransf_16: Puta 98.5 3E-07 6.5E-12 75.3 7.4 108 101-218 44-155 (173)
189 PF05219 DREV: DREV methyltran 98.4 1.6E-06 3.4E-11 74.7 10.1 92 102-217 94-186 (265)
190 KOG1499 Protein arginine N-met 98.4 4.5E-07 9.7E-12 80.8 6.9 102 102-216 60-164 (346)
191 KOG2915 tRNA(1-methyladenosine 98.4 2.2E-06 4.8E-11 73.9 10.8 124 101-245 104-231 (314)
192 PF05958 tRNA_U5-meth_tr: tRNA 98.4 6.9E-07 1.5E-11 81.2 7.3 79 101-185 195-288 (352)
193 KOG1709 Guanidinoacetate methy 98.4 3.4E-06 7.4E-11 70.5 10.2 105 101-218 100-205 (271)
194 PRK10742 putative methyltransf 98.4 5.7E-06 1.2E-10 71.1 11.8 81 105-187 91-176 (250)
195 KOG2940 Predicted methyltransf 98.3 6.8E-07 1.5E-11 75.4 5.0 99 103-218 73-173 (325)
196 PF13578 Methyltransf_24: Meth 98.3 4.4E-07 9.6E-12 67.9 3.5 97 107-218 1-104 (106)
197 PRK00050 16S rRNA m(4)C1402 me 98.3 3.6E-06 7.7E-11 74.6 9.4 77 102-184 19-99 (296)
198 PRK11783 rlmL 23S rRNA m(2)G24 98.3 6.6E-06 1.4E-10 81.2 11.4 112 102-219 190-347 (702)
199 PF03291 Pox_MCEL: mRNA cappin 98.3 1.2E-06 2.7E-11 78.8 5.4 113 102-219 62-186 (331)
200 KOG1500 Protein arginine N-met 98.3 5.8E-06 1.3E-10 73.4 9.3 102 102-218 177-281 (517)
201 PLN02232 ubiquinone biosynthes 98.2 2.2E-06 4.9E-11 69.2 6.2 81 130-219 1-81 (160)
202 KOG0820 Ribosomal RNA adenine 98.2 4E-06 8.6E-11 72.4 7.9 78 101-186 57-134 (315)
203 PRK01747 mnmC bifunctional tRN 98.2 6.8E-06 1.5E-10 80.7 10.2 113 103-219 58-206 (662)
204 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.9E-06 4.1E-11 76.7 5.6 115 102-219 46-183 (311)
205 KOG3420 Predicted RNA methylas 98.2 2.1E-06 4.6E-11 67.5 5.1 92 101-203 47-138 (185)
206 COG0144 Sun tRNA and rRNA cyto 98.2 4.6E-05 1E-09 69.4 14.6 138 98-244 151-309 (355)
207 TIGR02987 met_A_Alw26 type II 98.2 5.8E-06 1.3E-10 79.0 8.7 80 102-185 31-122 (524)
208 PF02527 GidB: rRNA small subu 98.2 4.6E-05 1E-09 63.1 12.7 113 104-239 50-164 (184)
209 PF01728 FtsJ: FtsJ-like methy 98.2 4E-06 8.7E-11 68.8 6.3 124 102-247 23-161 (181)
210 PRK04148 hypothetical protein; 98.1 6.9E-06 1.5E-10 64.3 6.2 70 102-184 16-86 (134)
211 PF02005 TRM: N2,N2-dimethylgu 98.1 1.3E-05 2.8E-10 73.5 8.1 104 103-219 50-154 (377)
212 PF05430 Methyltransf_30: S-ad 98.0 1E-05 2.2E-10 62.7 5.9 60 156-219 31-90 (124)
213 COG4076 Predicted RNA methylas 98.0 5.9E-06 1.3E-10 67.8 4.4 99 104-217 34-133 (252)
214 PF00398 RrnaAD: Ribosomal RNA 98.0 1.1E-05 2.3E-10 70.5 6.4 76 102-185 30-107 (262)
215 PF03059 NAS: Nicotianamine sy 98.0 3E-05 6.4E-10 68.0 9.0 108 102-219 120-230 (276)
216 TIGR00478 tly hemolysin TlyA f 98.0 3.5E-05 7.6E-10 65.9 9.3 40 101-141 74-113 (228)
217 PF12147 Methyltransf_20: Puta 98.0 0.00013 2.9E-09 63.9 12.2 128 100-240 133-265 (311)
218 COG1867 TRM1 N2,N2-dimethylgua 97.9 6.6E-05 1.4E-09 67.6 9.4 102 103-219 53-154 (380)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 0.00017 3.6E-09 63.7 11.8 136 101-245 84-241 (283)
220 PF01269 Fibrillarin: Fibrilla 97.9 0.00014 3E-09 61.5 10.6 122 101-241 72-203 (229)
221 KOG1975 mRNA cap methyltransfe 97.9 2.1E-05 4.5E-10 69.6 5.6 113 101-219 116-237 (389)
222 PF01739 CheR: CheR methyltran 97.9 0.00013 2.8E-09 61.0 9.6 111 102-219 31-175 (196)
223 PF06080 DUF938: Protein of un 97.8 0.00016 3.4E-09 60.6 9.7 132 105-243 28-166 (204)
224 PRK11760 putative 23S rRNA C24 97.8 0.00014 3E-09 65.4 9.8 115 101-241 210-326 (357)
225 PF07942 N2227: N2227-like pro 97.8 5.6E-05 1.2E-09 66.0 7.1 111 102-222 56-204 (270)
226 KOG2361 Predicted methyltransf 97.8 2.4E-05 5.2E-10 66.6 4.0 107 103-219 72-183 (264)
227 COG0293 FtsJ 23S rRNA methylas 97.7 0.00017 3.6E-09 60.4 8.1 126 101-248 44-182 (205)
228 PF01861 DUF43: Protein of unk 97.6 0.00041 8.8E-09 59.4 9.6 99 101-213 43-142 (243)
229 COG0116 Predicted N6-adenine-s 97.6 0.00021 4.7E-09 64.9 8.1 111 103-219 192-344 (381)
230 KOG2730 Methylase [General fun 97.6 0.00032 6.9E-09 59.1 8.3 101 102-214 94-197 (263)
231 PF04816 DUF633: Family of unk 97.6 0.00057 1.2E-08 57.5 9.7 101 106-219 1-101 (205)
232 PF05971 Methyltransf_10: Prot 97.6 0.00013 2.8E-09 64.6 5.6 80 103-185 103-187 (299)
233 PF08123 DOT1: Histone methyla 97.6 0.00058 1.3E-08 57.5 9.3 108 102-217 42-156 (205)
234 PRK10611 chemotaxis methyltran 97.5 0.00011 2.3E-09 65.0 4.9 112 102-219 115-262 (287)
235 TIGR01444 fkbM_fam methyltrans 97.5 0.00031 6.8E-09 54.9 6.6 56 106-165 2-57 (143)
236 COG1889 NOP1 Fibrillarin-like 97.4 0.0021 4.6E-08 53.5 10.8 127 101-242 75-206 (231)
237 COG0357 GidB Predicted S-adeno 97.4 0.00065 1.4E-08 57.5 8.0 100 103-219 68-168 (215)
238 KOG3178 Hydroxyindole-O-methyl 97.4 0.00046 1E-08 61.8 6.6 96 104-219 179-275 (342)
239 KOG2187 tRNA uracil-5-methyltr 97.4 0.00028 6.1E-09 66.0 5.4 121 101-242 382-507 (534)
240 PF09243 Rsm22: Mitochondrial 97.3 0.0015 3.2E-08 57.5 9.1 125 102-241 33-159 (274)
241 COG2384 Predicted SAM-dependen 97.3 0.0024 5.2E-08 53.9 9.9 105 101-218 15-119 (226)
242 KOG0822 Protein kinase inhibit 97.2 0.00097 2.1E-08 62.6 7.5 105 104-219 369-478 (649)
243 TIGR03439 methyl_EasF probable 97.2 0.011 2.4E-07 53.1 13.7 111 101-219 75-197 (319)
244 KOG1253 tRNA methyltransferase 97.2 0.00037 8.1E-09 64.9 4.1 105 101-219 108-216 (525)
245 COG0500 SmtA SAM-dependent met 97.1 0.0059 1.3E-07 45.9 9.9 102 106-220 52-156 (257)
246 KOG1122 tRNA and rRNA cytosine 97.0 0.011 2.4E-07 54.3 11.5 136 102-246 241-394 (460)
247 COG1352 CheR Methylase of chem 97.0 0.0033 7.1E-08 55.0 7.8 111 102-218 96-240 (268)
248 KOG3115 Methyltransferase-like 96.9 0.0052 1.1E-07 51.3 8.2 114 103-218 61-182 (249)
249 PF03141 Methyltransf_29: Puta 96.9 0.0025 5.4E-08 59.8 6.9 116 87-222 100-221 (506)
250 PF04445 SAM_MT: Putative SAM- 96.9 0.0009 1.9E-08 57.3 3.5 81 104-186 77-162 (234)
251 TIGR00006 S-adenosyl-methyltra 96.9 0.0062 1.3E-07 54.2 9.0 78 102-184 20-101 (305)
252 PF06962 rRNA_methylase: Putat 96.9 0.0039 8.5E-08 49.2 6.6 106 128-240 1-112 (140)
253 KOG2198 tRNA cytosine-5-methyl 96.8 0.012 2.5E-07 53.4 10.1 139 101-244 154-321 (375)
254 PF11599 AviRa: RRNA methyltra 96.8 0.0066 1.4E-07 51.1 7.9 114 101-217 50-212 (246)
255 cd00315 Cyt_C5_DNA_methylase C 96.8 0.003 6.4E-08 55.5 6.2 121 105-241 2-134 (275)
256 KOG4589 Cell division protein 96.8 0.012 2.6E-07 48.6 9.0 124 102-247 69-206 (232)
257 PF07091 FmrO: Ribosomal RNA m 96.7 0.0055 1.2E-07 52.8 7.2 75 101-182 104-178 (251)
258 COG1189 Predicted rRNA methyla 96.7 0.0079 1.7E-07 51.4 8.0 99 100-218 77-177 (245)
259 COG0286 HsdM Type I restrictio 96.7 0.013 2.9E-07 55.6 10.4 114 102-219 186-326 (489)
260 COG3897 Predicted methyltransf 96.7 0.0017 3.8E-08 53.8 3.9 97 102-217 79-176 (218)
261 PF05148 Methyltransf_8: Hypot 96.7 0.0025 5.4E-08 53.5 4.8 89 100-219 70-158 (219)
262 COG1064 AdhP Zn-dependent alco 96.7 0.016 3.4E-07 52.4 9.9 93 101-221 165-261 (339)
263 PF13679 Methyltransf_32: Meth 96.6 0.0054 1.2E-07 48.3 5.9 77 101-181 24-105 (141)
264 KOG1596 Fibrillarin and relate 96.5 0.019 4.1E-07 49.2 8.8 121 101-240 155-285 (317)
265 PRK11524 putative methyltransf 96.5 0.0094 2E-07 52.6 7.1 65 155-220 6-81 (284)
266 PF04989 CmcI: Cephalosporin h 96.5 0.0069 1.5E-07 50.9 5.8 104 101-218 31-146 (206)
267 PTZ00357 methyltransferase; Pr 96.4 0.011 2.3E-07 57.6 7.6 105 105-214 703-830 (1072)
268 PF04672 Methyltransf_19: S-ad 96.3 0.055 1.2E-06 47.2 10.9 128 103-241 69-210 (267)
269 COG0275 Predicted S-adenosylme 96.3 0.031 6.7E-07 49.4 9.2 77 103-184 24-105 (314)
270 KOG3045 Predicted RNA methylas 96.2 0.015 3.1E-07 50.5 6.7 102 102-237 180-281 (325)
271 PF01795 Methyltransf_5: MraW 96.1 0.019 4E-07 51.3 7.2 78 102-184 20-102 (310)
272 KOG2352 Predicted spermine/spe 95.8 0.059 1.3E-06 50.5 9.3 107 105-219 51-161 (482)
273 KOG3201 Uncharacterized conser 95.7 0.012 2.5E-07 47.6 3.6 127 102-241 29-157 (201)
274 COG1568 Predicted methyltransf 95.7 0.017 3.7E-07 50.5 4.9 79 102-185 152-231 (354)
275 COG1063 Tdh Threonine dehydrog 95.6 0.13 2.8E-06 46.7 10.5 99 103-220 169-270 (350)
276 PRK13699 putative methylase; P 95.6 0.036 7.9E-07 47.3 6.3 61 158-219 2-72 (227)
277 KOG3987 Uncharacterized conser 95.5 0.0025 5.4E-08 53.4 -0.8 92 102-217 112-205 (288)
278 cd08283 FDH_like_1 Glutathione 95.5 0.11 2.5E-06 47.4 9.9 111 101-219 183-306 (386)
279 PRK09880 L-idonate 5-dehydroge 95.5 0.098 2.1E-06 46.9 9.3 97 102-219 169-266 (343)
280 COG0270 Dcm Site-specific DNA 95.3 0.19 4.2E-06 45.2 10.4 124 103-241 3-138 (328)
281 PF03269 DUF268: Caenorhabditi 95.3 0.049 1.1E-06 43.9 5.7 104 103-219 2-111 (177)
282 PRK09424 pntA NAD(P) transhydr 95.3 0.22 4.7E-06 47.7 11.0 110 102-219 164-285 (509)
283 PHA01634 hypothetical protein 95.1 0.078 1.7E-06 41.2 6.0 75 101-184 27-101 (156)
284 KOG2078 tRNA modification enzy 95.0 0.076 1.6E-06 49.0 6.9 68 101-173 248-316 (495)
285 KOG0024 Sorbitol dehydrogenase 94.9 0.17 3.7E-06 45.3 8.7 101 101-217 168-271 (354)
286 KOG1562 Spermidine synthase [A 94.9 0.061 1.3E-06 47.5 5.8 184 24-220 100-294 (337)
287 KOG2798 Putative trehalase [Ca 94.7 0.031 6.6E-07 49.7 3.5 108 103-222 151-298 (369)
288 KOG1269 SAM-dependent methyltr 94.7 0.045 9.8E-07 50.0 4.7 104 102-218 110-214 (364)
289 KOG1099 SAM-dependent methyltr 94.7 0.093 2E-06 44.8 6.2 124 102-248 41-186 (294)
290 PF00145 DNA_methylase: C-5 cy 94.7 0.17 3.6E-06 44.7 8.3 120 105-241 2-133 (335)
291 PF04378 RsmJ: Ribosomal RNA s 94.7 0.27 5.9E-06 42.5 9.1 118 107-241 62-182 (245)
292 KOG4058 Uncharacterized conser 94.6 0.067 1.5E-06 42.6 4.7 76 89-168 58-134 (199)
293 TIGR00518 alaDH alanine dehydr 94.5 0.49 1.1E-05 43.4 11.0 98 102-216 166-264 (370)
294 PF01555 N6_N4_Mtase: DNA meth 94.4 0.12 2.6E-06 43.0 6.3 44 99-144 188-231 (231)
295 PRK09260 3-hydroxybutyryl-CoA 94.4 0.15 3.3E-06 44.8 7.2 102 104-220 2-118 (288)
296 KOG1501 Arginine N-methyltrans 94.3 0.083 1.8E-06 49.1 5.2 55 104-162 68-122 (636)
297 TIGR00561 pntA NAD(P) transhyd 94.1 0.56 1.2E-05 44.9 10.7 106 102-216 163-281 (511)
298 KOG0821 Predicted ribosomal RN 94.1 0.046 1E-06 46.4 3.0 60 103-168 51-110 (326)
299 COG4121 Uncharacterized conser 94.1 0.062 1.3E-06 46.5 3.9 112 104-219 60-208 (252)
300 PF11968 DUF3321: Putative met 94.0 0.077 1.7E-06 44.8 4.3 95 103-223 52-153 (219)
301 PRK11524 putative methyltransf 94.0 0.16 3.5E-06 44.7 6.6 47 99-147 205-251 (284)
302 cd08230 glucose_DH Glucose deh 94.0 0.45 9.8E-06 42.8 9.6 94 102-219 172-269 (355)
303 COG2961 ComJ Protein involved 94.0 0.67 1.5E-05 40.1 9.8 118 107-241 93-213 (279)
304 PRK05562 precorrin-2 dehydroge 93.9 0.19 4.1E-06 42.8 6.4 84 86-185 8-95 (223)
305 TIGR00675 dcm DNA-methyltransf 93.9 0.19 4E-06 45.1 6.7 120 106-241 1-131 (315)
306 cd08281 liver_ADH_like1 Zinc-d 93.8 0.43 9.4E-06 43.3 9.1 98 102-219 191-290 (371)
307 KOG2671 Putative RNA methylase 93.6 0.045 9.7E-07 49.3 2.2 82 100-185 206-294 (421)
308 TIGR03451 mycoS_dep_FDH mycoth 93.6 0.52 1.1E-05 42.5 9.3 99 101-219 175-276 (358)
309 PRK07502 cyclohexadienyl dehyd 93.4 0.77 1.7E-05 40.7 9.8 89 104-216 7-97 (307)
310 COG5459 Predicted rRNA methyla 93.2 0.15 3.3E-06 46.1 4.9 111 102-222 113-229 (484)
311 PF01210 NAD_Gly3P_dh_N: NAD-d 93.1 0.73 1.6E-05 36.7 8.5 96 105-217 1-101 (157)
312 COG0686 Ald Alanine dehydrogen 93.0 0.92 2E-05 40.6 9.4 98 102-216 167-265 (371)
313 PRK11064 wecC UDP-N-acetyl-D-m 93.0 1.7 3.8E-05 40.4 11.9 103 104-220 4-120 (415)
314 PRK06130 3-hydroxybutyryl-CoA 92.8 0.71 1.5E-05 40.9 8.8 101 104-219 5-115 (311)
315 TIGR01202 bchC 2-desacetyl-2-h 92.8 0.56 1.2E-05 41.5 8.0 86 102-218 144-230 (308)
316 PRK05808 3-hydroxybutyryl-CoA 92.7 0.36 7.8E-06 42.3 6.6 102 104-221 4-120 (282)
317 PF07279 DUF1442: Protein of u 92.7 2.8 6E-05 35.5 11.4 102 101-217 40-146 (218)
318 PF12692 Methyltransf_17: S-ad 92.6 0.34 7.3E-06 38.6 5.6 103 101-217 27-132 (160)
319 PRK12475 thiamine/molybdopteri 92.5 0.48 1E-05 42.9 7.3 34 102-136 23-58 (338)
320 PF10354 DUF2431: Domain of un 92.5 0.15 3.3E-06 41.4 3.7 108 107-219 1-125 (166)
321 PF10237 N6-adenineMlase: Prob 92.4 1.6 3.5E-05 35.3 9.4 96 101-219 24-123 (162)
322 cd08293 PTGR2 Prostaglandin re 92.3 1.1 2.3E-05 39.9 9.4 95 104-218 156-253 (345)
323 TIGR02356 adenyl_thiF thiazole 92.0 0.59 1.3E-05 39.0 6.8 33 102-135 20-54 (202)
324 PRK13699 putative methylase; P 92.0 0.53 1.1E-05 40.2 6.6 46 100-147 161-206 (227)
325 PF00107 ADH_zinc_N: Zinc-bind 91.9 0.43 9.2E-06 36.2 5.5 89 112-221 1-91 (130)
326 PF02737 3HCDH_N: 3-hydroxyacy 91.9 0.94 2E-05 37.1 7.8 100 105-220 1-115 (180)
327 cd05188 MDR Medium chain reduc 91.8 2 4.3E-05 36.2 10.1 99 101-220 133-233 (271)
328 PF05711 TylF: Macrocin-O-meth 91.8 3.4 7.3E-05 35.8 11.4 126 101-243 73-230 (248)
329 PF03721 UDPG_MGDP_dh_N: UDP-g 91.8 0.64 1.4E-05 38.3 6.7 126 105-239 2-139 (185)
330 PRK05597 molybdopterin biosynt 91.8 0.76 1.6E-05 41.9 7.7 34 102-136 27-62 (355)
331 PF02254 TrkA_N: TrkA-N domain 91.7 1.4 3E-05 32.8 7.9 92 106-220 1-97 (116)
332 PRK07066 3-hydroxybutyryl-CoA 91.5 0.94 2E-05 40.8 7.9 103 103-220 7-120 (321)
333 COG3129 Predicted SAM-dependen 91.4 0.48 1E-05 40.7 5.5 82 102-186 78-164 (292)
334 cd08285 NADP_ADH NADP(H)-depen 91.4 1.8 4E-05 38.6 9.8 98 101-218 165-265 (351)
335 TIGR03366 HpnZ_proposed putati 91.4 2 4.4E-05 37.2 9.8 96 102-219 120-218 (280)
336 PRK08644 thiamine biosynthesis 91.4 0.82 1.8E-05 38.6 7.0 33 102-135 27-61 (212)
337 cd08254 hydroxyacyl_CoA_DH 6-h 91.2 1.5 3.4E-05 38.5 9.1 98 101-219 164-263 (338)
338 PRK08293 3-hydroxybutyryl-CoA 91.1 1.9 4.1E-05 37.9 9.4 102 104-220 4-121 (287)
339 COG0287 TyrA Prephenate dehydr 91.1 0.94 2E-05 39.9 7.4 90 104-216 4-95 (279)
340 cd01487 E1_ThiF_like E1_ThiF_l 91.1 1.2 2.7E-05 36.2 7.6 31 105-136 1-33 (174)
341 cd08239 THR_DH_like L-threonin 91.1 2.7 6E-05 37.2 10.6 98 101-219 162-262 (339)
342 PRK06035 3-hydroxyacyl-CoA deh 91.0 1.4 3.1E-05 38.7 8.5 100 104-219 4-121 (291)
343 TIGR01470 cysG_Nterm siroheme 91.0 1.1 2.3E-05 37.7 7.3 74 96-185 2-79 (205)
344 PRK05476 S-adenosyl-L-homocyst 90.9 3.2 6.8E-05 38.9 11.0 90 102-222 211-301 (425)
345 PRK07819 3-hydroxybutyryl-CoA 90.8 1.3 2.9E-05 39.0 8.1 101 104-220 6-122 (286)
346 PF02719 Polysacc_synt_2: Poly 90.8 0.87 1.9E-05 40.4 6.8 75 106-184 1-86 (293)
347 cd00401 AdoHcyase S-adenosyl-L 90.7 2.4 5.3E-05 39.5 10.0 90 101-221 200-290 (413)
348 PRK07688 thiamine/molybdopteri 90.7 1.2 2.6E-05 40.4 7.8 34 102-136 23-58 (339)
349 cd08232 idonate-5-DH L-idonate 90.6 2.1 4.7E-05 37.8 9.4 96 102-218 165-261 (339)
350 PRK10458 DNA cytosine methylas 90.6 1.2 2.6E-05 42.2 8.0 127 103-241 88-250 (467)
351 TIGR00936 ahcY adenosylhomocys 90.5 7.8 0.00017 36.1 13.1 116 101-247 193-309 (406)
352 PF02826 2-Hacid_dh_C: D-isome 90.4 5 0.00011 32.6 10.7 91 101-220 34-127 (178)
353 PLN02353 probable UDP-glucose 90.4 4 8.6E-05 38.8 11.3 113 104-222 2-130 (473)
354 COG4798 Predicted methyltransf 90.2 0.38 8.2E-06 40.2 3.7 115 101-219 47-166 (238)
355 PRK07530 3-hydroxybutyryl-CoA 90.1 1.2 2.6E-05 39.2 7.2 102 104-221 5-121 (292)
356 TIGR03201 dearomat_had 6-hydro 89.9 2.5 5.5E-05 37.9 9.4 44 101-145 165-209 (349)
357 PLN02545 3-hydroxybutyryl-CoA 89.7 1.6 3.4E-05 38.5 7.7 102 103-220 4-120 (295)
358 COG5379 BtaA S-adenosylmethion 89.7 0.75 1.6E-05 40.8 5.3 44 101-146 62-105 (414)
359 cd01485 E1-1_like Ubiquitin ac 89.7 1.7 3.6E-05 36.2 7.4 34 102-136 18-53 (198)
360 COG1748 LYS9 Saccharopine dehy 89.7 1.2 2.6E-05 41.2 7.0 73 104-185 2-78 (389)
361 PLN02740 Alcohol dehydrogenase 89.6 3.9 8.5E-05 37.2 10.4 99 101-219 197-300 (381)
362 COG1086 Predicted nucleoside-d 89.5 2 4.3E-05 41.4 8.5 79 102-184 249-334 (588)
363 KOG1331 Predicted methyltransf 89.4 0.31 6.8E-06 42.8 2.9 100 101-219 44-143 (293)
364 PF01488 Shikimate_DH: Shikima 89.4 4.3 9.3E-05 31.4 9.1 73 101-185 10-85 (135)
365 cd01492 Aos1_SUMO Ubiquitin ac 89.4 1.5 3.3E-05 36.5 6.9 34 102-136 20-55 (197)
366 TIGR02822 adh_fam_2 zinc-bindi 89.3 3.4 7.4E-05 36.8 9.7 90 101-219 164-254 (329)
367 PLN03154 putative allyl alcoho 89.3 3.2 6.8E-05 37.4 9.5 98 101-219 157-258 (348)
368 PF06460 NSP13: Coronavirus NS 89.2 1.8 3.9E-05 37.7 7.2 101 100-220 59-170 (299)
369 cd08238 sorbose_phosphate_red 89.2 4.5 9.8E-05 37.3 10.6 103 102-218 175-287 (410)
370 KOG1227 Putative methyltransfe 89.1 0.099 2.2E-06 46.3 -0.4 78 101-184 193-271 (351)
371 PRK08268 3-hydroxy-acyl-CoA de 89.1 2.1 4.4E-05 41.1 8.4 104 102-221 6-124 (507)
372 PF01262 AlaDh_PNT_C: Alanine 89.0 1.1 2.3E-05 36.2 5.6 107 102-216 19-136 (168)
373 PLN02827 Alcohol dehydrogenase 89.0 4.1 8.8E-05 37.2 10.1 99 101-219 192-295 (378)
374 PF02636 Methyltransf_28: Puta 89.0 0.37 8.1E-06 41.6 3.1 45 103-147 19-71 (252)
375 PRK15116 sulfur acceptor prote 89.0 2.8 6.1E-05 36.7 8.5 35 102-136 29-64 (268)
376 TIGR00497 hsdM type I restrict 88.8 3.2 6.9E-05 39.6 9.5 111 104-217 219-353 (501)
377 PTZ00117 malate dehydrogenase; 88.8 5.8 0.00013 35.6 10.7 110 102-220 4-123 (319)
378 cd00757 ThiF_MoeB_HesA_family 88.7 1.6 3.4E-05 37.1 6.6 34 102-136 20-55 (228)
379 cd08237 ribitol-5-phosphate_DH 88.6 4.4 9.6E-05 36.3 9.9 93 101-219 162-256 (341)
380 cd05278 FDH_like Formaldehyde 88.6 4 8.7E-05 36.1 9.6 96 102-217 167-265 (347)
381 cd08294 leukotriene_B4_DH_like 88.6 4 8.6E-05 35.8 9.5 96 101-218 142-240 (329)
382 COG0604 Qor NADPH:quinone redu 88.5 3.2 6.9E-05 37.3 8.9 97 102-220 142-242 (326)
383 cd05291 HicDH_like L-2-hydroxy 88.5 6.9 0.00015 34.8 10.9 108 104-220 1-118 (306)
384 PRK00066 ldh L-lactate dehydro 88.4 7.7 0.00017 34.7 11.2 113 101-220 4-123 (315)
385 TIGR02825 B4_12hDH leukotriene 88.3 5.1 0.00011 35.3 10.0 96 101-218 137-236 (325)
386 PRK08762 molybdopterin biosynt 88.3 1.4 3E-05 40.5 6.4 33 102-135 134-168 (376)
387 PRK06719 precorrin-2 dehydroge 88.3 0.99 2.2E-05 36.2 4.9 45 93-141 3-49 (157)
388 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.2 2.6 5.6E-05 40.4 8.4 104 102-221 4-122 (503)
389 PTZ00082 L-lactate dehydrogena 88.1 14 0.0003 33.2 12.7 76 102-184 5-83 (321)
390 cd00755 YgdL_like Family of ac 88.1 2.4 5.3E-05 36.3 7.4 35 102-136 10-45 (231)
391 PLN02494 adenosylhomocysteinas 87.9 6.8 0.00015 37.2 10.8 118 101-249 252-371 (477)
392 PRK07417 arogenate dehydrogena 87.7 3.2 7E-05 36.2 8.2 88 105-220 2-91 (279)
393 PF14314 Methyltrans_Mon: Viru 87.6 1.8 3.9E-05 42.6 7.0 142 101-248 321-482 (675)
394 PRK10309 galactitol-1-phosphat 87.6 3.9 8.5E-05 36.4 8.9 100 101-219 159-260 (347)
395 TIGR02818 adh_III_F_hyde S-(hy 87.5 7.2 0.00016 35.3 10.7 45 101-145 184-229 (368)
396 cd05285 sorbitol_DH Sorbitol d 87.4 5.4 0.00012 35.5 9.6 98 101-218 161-264 (343)
397 TIGR01627 A_thal_3515 uncharac 87.1 6.6 0.00014 33.2 9.1 49 97-147 34-82 (225)
398 cd01483 E1_enzyme_family Super 87.0 2.8 6E-05 32.6 6.7 30 105-135 1-32 (143)
399 PRK09496 trkA potassium transp 87.0 4.1 8.9E-05 37.9 8.9 72 102-184 230-306 (453)
400 KOG2912 Predicted DNA methylas 86.9 3.2 6.9E-05 37.4 7.5 75 107-184 107-187 (419)
401 PF11899 DUF3419: Protein of u 86.6 1.9 4.1E-05 39.7 6.3 43 101-145 34-76 (380)
402 cd08295 double_bond_reductase_ 86.5 6.9 0.00015 34.7 9.9 97 101-218 150-250 (338)
403 PRK10637 cysG siroheme synthas 86.5 1.6 3.5E-05 41.2 5.9 75 94-184 3-81 (457)
404 PRK03562 glutathione-regulated 86.4 3.3 7.2E-05 40.7 8.3 70 103-185 400-474 (621)
405 PRK07904 short chain dehydroge 86.3 5.9 0.00013 33.8 9.0 79 101-184 6-96 (253)
406 COG4017 Uncharacterized protei 86.2 1.7 3.7E-05 36.3 5.1 39 100-140 42-81 (254)
407 PRK08945 putative oxoacyl-(acy 85.9 5.1 0.00011 33.7 8.3 77 102-184 11-101 (247)
408 PRK05708 2-dehydropantoate 2-r 85.8 2.8 6.1E-05 37.2 6.9 94 104-217 3-102 (305)
409 PRK07340 ornithine cyclodeamin 85.8 25 0.00054 31.2 12.9 76 99-185 121-198 (304)
410 COG1565 Uncharacterized conser 85.7 1.5 3.3E-05 39.9 5.1 48 100-147 75-130 (370)
411 PRK06223 malate dehydrogenase; 85.7 12 0.00026 33.1 10.8 108 104-220 3-120 (307)
412 PRK08306 dipicolinate synthase 85.6 9.4 0.0002 33.8 10.1 66 102-183 151-218 (296)
413 PF00670 AdoHcyase_NAD: S-aden 85.5 7.8 0.00017 31.3 8.6 90 101-222 21-112 (162)
414 cd08277 liver_alcohol_DH_like 85.5 11 0.00024 33.9 10.8 99 101-219 183-286 (365)
415 cd05292 LDH_2 A subgroup of L- 85.2 16 0.00035 32.5 11.5 105 105-219 2-116 (308)
416 cd08300 alcohol_DH_class_III c 85.1 12 0.00025 33.9 10.7 99 101-219 185-288 (368)
417 PRK07102 short chain dehydroge 85.0 4.4 9.6E-05 34.0 7.5 75 104-184 2-85 (243)
418 PRK03659 glutathione-regulated 85.0 6.3 0.00014 38.6 9.4 93 104-219 401-498 (601)
419 cd08278 benzyl_alcohol_DH Benz 84.8 8.9 0.00019 34.6 9.8 97 102-218 186-284 (365)
420 cd01065 NAD_bind_Shikimate_DH 84.7 6.9 0.00015 30.4 8.0 74 101-186 17-92 (155)
421 PLN02256 arogenate dehydrogena 84.6 9.8 0.00021 33.9 9.7 91 101-220 34-127 (304)
422 PRK08507 prephenate dehydrogen 84.4 7.3 0.00016 33.9 8.8 88 105-220 2-91 (275)
423 PRK06129 3-hydroxyacyl-CoA deh 84.4 9.9 0.00021 33.7 9.7 39 104-144 3-43 (308)
424 PRK05600 thiamine biosynthesis 84.2 5.4 0.00012 36.6 8.1 33 102-135 40-74 (370)
425 cd05290 LDH_3 A subgroup of L- 84.1 15 0.00033 32.8 10.8 111 105-221 1-121 (307)
426 PRK06949 short chain dehydroge 84.0 9 0.0002 32.2 9.0 76 102-184 8-95 (258)
427 TIGR02819 fdhA_non_GSH formald 83.9 17 0.00038 33.4 11.4 108 101-219 184-299 (393)
428 PRK06194 hypothetical protein; 83.9 7.2 0.00016 33.6 8.5 76 102-184 5-92 (287)
429 KOG2793 Putative N2,N2-dimethy 83.9 2.6 5.6E-05 36.6 5.5 42 102-145 86-127 (248)
430 PRK11154 fadJ multifunctional 83.8 4.4 9.5E-05 40.5 7.9 103 104-221 310-427 (708)
431 PTZ00075 Adenosylhomocysteinas 83.8 11 0.00024 35.8 10.1 90 101-221 252-342 (476)
432 cd01488 Uba3_RUB Ubiquitin act 83.8 4 8.7E-05 36.2 6.8 32 105-137 1-34 (291)
433 PF13241 NAD_binding_7: Putati 83.7 5.2 0.00011 29.4 6.5 66 100-184 4-69 (103)
434 PRK12921 2-dehydropantoate 2-r 83.7 7.2 0.00016 34.1 8.5 93 105-217 2-100 (305)
435 COG0677 WecC UDP-N-acetyl-D-ma 83.7 12 0.00025 34.8 9.8 106 104-222 10-131 (436)
436 cd08234 threonine_DH_like L-th 83.6 10 0.00022 33.2 9.5 94 102-218 159-256 (334)
437 cd01493 APPBP1_RUB Ubiquitin a 83.5 3.3 7.1E-05 38.8 6.4 33 102-136 19-54 (425)
438 COG1062 AdhC Zn-dependent alco 83.5 3.2 7E-05 37.6 6.0 99 101-218 184-284 (366)
439 PF00106 adh_short: short chai 83.4 6.7 0.00015 30.6 7.5 76 104-185 1-90 (167)
440 PF03141 Methyltransf_29: Puta 83.4 2.6 5.6E-05 40.0 5.6 102 102-219 365-467 (506)
441 cd08245 CAD Cinnamyl alcohol d 83.2 15 0.00033 32.1 10.5 94 101-218 161-255 (330)
442 cd08261 Zn_ADH7 Alcohol dehydr 83.1 9.3 0.0002 33.7 9.1 97 101-218 158-257 (337)
443 PRK10669 putative cation:proto 83.0 6.1 0.00013 38.2 8.3 93 104-219 418-515 (558)
444 PF01408 GFO_IDH_MocA: Oxidore 82.9 16 0.00036 26.9 12.1 110 105-243 2-114 (120)
445 COG0569 TrkA K+ transport syst 82.6 8.6 0.00019 32.6 8.2 70 104-184 1-75 (225)
446 PRK08328 hypothetical protein; 82.6 1.8 4E-05 36.9 4.1 34 102-136 26-61 (231)
447 PRK06172 short chain dehydroge 82.6 11 0.00023 31.8 8.9 76 102-184 6-93 (253)
448 TIGR02437 FadB fatty oxidation 82.5 5.3 0.00011 40.0 7.8 102 104-221 314-430 (714)
449 PRK12549 shikimate 5-dehydroge 82.4 22 0.00047 31.3 11.0 74 101-184 125-201 (284)
450 PF11899 DUF3419: Protein of u 82.3 2.2 4.7E-05 39.4 4.7 58 156-219 275-334 (380)
451 PRK08618 ornithine cyclodeamin 82.2 36 0.00078 30.5 12.5 114 59-185 86-202 (325)
452 TIGR01408 Ube1 ubiquitin-activ 82.1 4.8 0.0001 41.8 7.5 52 84-136 3-58 (1008)
453 cd08233 butanediol_DH_like (2R 82.0 11 0.00024 33.6 9.1 98 101-218 171-271 (351)
454 COG0169 AroE Shikimate 5-dehyd 81.9 10 0.00022 33.5 8.6 71 76-147 99-171 (283)
455 cd05298 GH4_GlvA_pagL_like Gly 81.9 13 0.00027 35.1 9.7 38 105-143 2-46 (437)
456 PLN02702 L-idonate 5-dehydroge 81.8 16 0.00034 32.8 10.1 97 102-218 181-284 (364)
457 cd08243 quinone_oxidoreductase 81.4 22 0.00047 30.7 10.6 95 101-218 141-237 (320)
458 PRK07035 short chain dehydroge 81.4 13 0.00027 31.3 8.9 76 102-184 7-94 (252)
459 cd08301 alcohol_DH_plants Plan 81.4 19 0.0004 32.5 10.5 45 101-145 186-231 (369)
460 PRK08217 fabG 3-ketoacyl-(acyl 81.3 13 0.00029 30.9 9.0 76 102-184 4-91 (253)
461 cd05213 NAD_bind_Glutamyl_tRNA 81.2 24 0.00052 31.4 10.9 96 102-222 177-275 (311)
462 PRK12749 quinate/shikimate deh 81.1 12 0.00027 33.0 9.0 36 101-137 122-159 (288)
463 PF02153 PDH: Prephenate dehyd 81.1 5.8 0.00013 34.3 6.8 75 117-216 2-76 (258)
464 TIGR01381 E1_like_apg7 E1-like 81.1 2 4.3E-05 42.2 4.1 34 102-136 337-372 (664)
465 TIGR01763 MalateDH_bact malate 81.1 22 0.00048 31.6 10.6 107 104-221 2-120 (305)
466 PRK12548 shikimate 5-dehydroge 80.9 9.6 0.00021 33.6 8.2 76 101-184 124-208 (289)
467 PRK07454 short chain dehydroge 80.9 15 0.00034 30.5 9.2 75 102-184 5-92 (241)
468 KOG2920 Predicted methyltransf 80.8 1.1 2.4E-05 39.4 2.1 39 101-140 115-153 (282)
469 PRK14620 NAD(P)H-dependent gly 80.7 18 0.0004 32.1 10.1 96 105-216 2-103 (326)
470 PRK01438 murD UDP-N-acetylmura 80.7 7.1 0.00015 36.8 7.7 71 102-184 15-87 (480)
471 KOG1198 Zinc-binding oxidoredu 80.7 5.1 0.00011 36.5 6.5 76 101-184 156-234 (347)
472 PLN02427 UDP-apiose/xylose syn 80.6 7.4 0.00016 35.4 7.6 78 102-184 13-95 (386)
473 KOG0022 Alcohol dehydrogenase, 80.6 4.3 9.4E-05 36.5 5.7 45 101-145 191-236 (375)
474 PRK05867 short chain dehydroge 80.5 11 0.00023 31.9 8.1 76 102-184 8-95 (253)
475 PF05050 Methyltransf_21: Meth 80.5 4.1 8.8E-05 31.8 5.2 42 108-149 1-48 (167)
476 PRK06124 gluconate 5-dehydroge 80.5 17 0.00036 30.7 9.4 76 102-184 10-97 (256)
477 PRK12829 short chain dehydroge 80.5 16 0.00034 30.8 9.2 74 102-184 10-95 (264)
478 PRK14027 quinate/shikimate deh 80.4 27 0.00058 30.8 10.8 41 101-142 125-167 (283)
479 PRK07890 short chain dehydroge 80.1 12 0.00027 31.4 8.5 76 102-184 4-91 (258)
480 PRK07453 protochlorophyllide o 80.0 16 0.00035 32.2 9.5 76 102-184 5-92 (322)
481 PRK11730 fadB multifunctional 79.9 6.9 0.00015 39.1 7.6 102 104-221 314-430 (715)
482 KOG1201 Hydroxysteroid 17-beta 79.8 10 0.00023 33.7 7.8 75 102-184 37-123 (300)
483 cd01489 Uba2_SUMO Ubiquitin ac 79.8 7.8 0.00017 34.8 7.2 33 105-138 1-35 (312)
484 cd08236 sugar_DH NAD(P)-depend 79.8 30 0.00064 30.5 11.1 98 101-218 158-257 (343)
485 TIGR03026 NDP-sugDHase nucleot 79.7 29 0.00063 32.1 11.3 107 105-219 2-120 (411)
486 PRK00258 aroE shikimate 5-dehy 79.7 9.9 0.00021 33.2 7.8 73 101-185 121-195 (278)
487 PLN02819 lysine-ketoglutarate 79.6 9.7 0.00021 39.7 8.7 77 102-185 568-658 (1042)
488 cd05297 GH4_alpha_glucosidase_ 79.6 5.7 0.00012 37.1 6.6 75 105-184 2-83 (423)
489 cd05281 TDH Threonine dehydrog 79.6 20 0.00043 31.8 9.9 97 101-218 162-261 (341)
490 PRK06718 precorrin-2 dehydroge 79.5 7.4 0.00016 32.5 6.7 37 96-134 3-41 (202)
491 PRK06522 2-dehydropantoate 2-r 79.3 21 0.00045 31.1 9.8 92 105-217 2-98 (304)
492 TIGR02355 moeB molybdopterin s 79.3 2.9 6.3E-05 35.9 4.2 36 102-138 23-60 (240)
493 PRK08213 gluconate 5-dehydroge 79.2 14 0.00031 31.2 8.5 75 102-184 11-98 (259)
494 PRK07478 short chain dehydroge 79.2 17 0.00037 30.6 9.0 76 102-184 5-92 (254)
495 PRK08267 short chain dehydroge 79.2 11 0.00023 32.0 7.8 72 104-184 2-86 (260)
496 PRK14806 bifunctional cyclohex 79.1 22 0.00047 35.6 10.9 89 104-216 4-94 (735)
497 PRK08324 short chain dehydroge 79.1 29 0.00064 34.4 11.8 74 103-184 422-507 (681)
498 PF02558 ApbA: Ketopantoate re 79.1 11 0.00023 29.3 7.1 95 106-218 1-100 (151)
499 PF06690 DUF1188: Protein of u 79.1 5.7 0.00012 34.1 5.7 39 103-143 42-81 (252)
500 PRK07531 bifunctional 3-hydrox 79.0 18 0.00039 34.5 9.9 101 104-219 5-116 (495)
No 1
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=6.2e-46 Score=320.25 Aligned_cols=216 Identities=46% Similarity=0.833 Sum_probs=197.5
Q ss_pred ceEEeeec---cccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeE
Q 025534 30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (251)
Q Consensus 30 ~w~~~~~~---~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~V 106 (251)
+|++|.++ ++.+..|++.+++++.+|+||+|.|++++.+|+++++||.+|+++++++.|||+|+|+|++.++++++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCCC
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD 185 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~-~fD~Ii~D~~~ 185 (251)
|+||+|+|+++++++++++..+|++|||||+++++|+++|+.....+++||++++++||+.|+++..+ +||+|++|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999877899999999999999999998654446789999999999999998777 99999999999
Q ss_pred CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL 250 (251)
Q Consensus 186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (251)
|. ++...|++.+||+. ++++|+|||++++|..+| +.....++.+.++|+++|+.|.+|..
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTA 220 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEE
Confidence 77 44456999999999 799999999999999777 56788999999999999999999864
No 2
>PLN02823 spermine synthase
Probab=100.00 E-value=3.6e-45 Score=327.15 Aligned_cols=246 Identities=74% Similarity=1.224 Sum_probs=214.0
Q ss_pred ceeeecCCcccccCCccCcCCCC-ccccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccc
Q 025534 3 EISCSNGISQANGADAKNVALTG-YRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA 81 (251)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~ 81 (251)
||--.||.|..........++.. +-.+.|+.|...++.++.+.+.++|++.+|+||+|.|++++.+|++|++||..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~ 82 (336)
T PLN02823 3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA 82 (336)
T ss_pred ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence 56667777754332211112211 22568999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE
Q 025534 82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (251)
Q Consensus 82 ~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~ 161 (251)
+.+++.|||+|+|++++.+++|++||+||+|+|+++++++++++..+|++||+|++++++|+++|+.+.+.+.+||++++
T Consensus 83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~ 162 (336)
T PLN02823 83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI 162 (336)
T ss_pred cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence 99999999999999999999999999999999999999999877789999999999999999999876556778999999
Q ss_pred EcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHH-HHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 162 ~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~-~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
.+|+++|++..+++||+|++|.++|...+|+.+|++.+||+ . ++++|+|||++++|.+++..+...+.++.++++|++
T Consensus 163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99999999877789999999999886545667899999998 8 699999999999998876445567789999999999
Q ss_pred hCCceeeec
Q 025534 241 VFKCGYNLT 249 (251)
Q Consensus 241 ~F~~v~~~~ 249 (251)
+||+|.+|.
T Consensus 242 vF~~v~~y~ 250 (336)
T PLN02823 242 VFKYVVPYT 250 (336)
T ss_pred hCCCEEEEE
Confidence 999999986
No 3
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=4.7e-44 Score=314.72 Aligned_cols=217 Identities=41% Similarity=0.748 Sum_probs=199.3
Q ss_pred ccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (251)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL 107 (251)
..+|+.|..+++.++.+.++++|++.+|+||+|.|++++++||+|++||..|+++++++.|||+++|+|++.++++++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL 81 (283)
T PRK00811 2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL 81 (283)
T ss_pred CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (251)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~ 186 (251)
+||||+|.++++++++++..+|++||+|+++++.|+++++. +.+.+++||++++.+|+++|++...++||+|++|+++|
T Consensus 82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP 161 (283)
T ss_pred EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence 99999999999999987778999999999999999999873 33334689999999999999987678999999999988
Q ss_pred CCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT 249 (251)
Q Consensus 187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (251)
. +|...|++.+||+. ++++|+|||+++++.++| +...+.++++.++|+++|+++.+|.
T Consensus 162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~ 219 (283)
T PRK00811 162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQ 219 (283)
T ss_pred C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEE
Confidence 7 55568999999999 799999999999998877 5567889999999999999999886
No 4
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=2e-44 Score=311.26 Aligned_cols=200 Identities=17% Similarity=0.222 Sum_probs=181.6
Q ss_pred ceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEE
Q 025534 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (251)
Q Consensus 30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~i 109 (251)
+|++|..+++.+..++++++|++.+|+||+|+|++++.|||+|.|| ..|.++.||+.|||||+|+|++.|++|+|||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 5999999999999999999999999999999999999999999999 555689999999999999999999999999999
Q ss_pred ecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025534 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (251)
Q Consensus 110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~ 189 (251)
|+|+|+++++++||+ .+|+.||||++|+++||+|++...++++|||++++. .+.+...++||+||+|..
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~----- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE----- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence 999999999999996 399999999999999999998655678999999997 133323478999999953
Q ss_pred CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL 250 (251)
Q Consensus 190 ~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (251)
++++||+. ++++|+|||++++|+++| +...+.++++.++++++|+.+.||..
T Consensus 149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~ 200 (262)
T PRK00536 149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVA 200 (262)
T ss_pred ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEe
Confidence 34699999 799999999999999999 66788999999999999999999964
No 5
>PLN02366 spermidine synthase
Probab=100.00 E-value=6.5e-44 Score=316.04 Aligned_cols=219 Identities=33% Similarity=0.615 Sum_probs=198.1
Q ss_pred CccccceEEeee--ccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCC
Q 025534 25 GYRKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102 (251)
Q Consensus 25 ~~~~~~w~~~~~--~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~ 102 (251)
.....+|+.|.. +++....++++++|++.+|+||+|.|++++.+|++|++||.+|+++++++.|+|+++|+|++.+++
T Consensus 12 ~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~ 91 (308)
T PLN02366 12 STVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91 (308)
T ss_pred chhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCC
Confidence 356689999884 577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~ 181 (251)
+++||+||||+|+++++++++++..+|++||+|++++++|+++|+.....+++||++++++|+++|+++. +++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 9999999999999999999997778999999999999999999975333467899999999999999765 578999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC-ceeee
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK-CGYNL 248 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~-~v~~~ 248 (251)
|.++|. +|...|++.+||+. ++++|+|||++++|.++| +...+.++.+.++|+++|+ .+..|
T Consensus 172 D~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~ 234 (308)
T PLN02366 172 DSSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYA 234 (308)
T ss_pred cCCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEE
Confidence 999887 56678999999999 799999999999999887 7778899999999999995 55443
No 6
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=308.63 Aligned_cols=218 Identities=41% Similarity=0.740 Sum_probs=203.3
Q ss_pred ccceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (251)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL 107 (251)
..+|+.|..+++.+..+.++.++++++|.||.|.+++++.+|++|.+||..|+++.+++.|||+++|++++.++++++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 46899999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025534 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (251)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~ 187 (251)
+||+|.|++++++++|.+.+++++||||++++++||++|+.......+||++++++|+++|+++..++||+||+|.++|.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999998889999999999999999999986543334899999999999999988779999999999995
Q ss_pred CCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL 250 (251)
Q Consensus 188 ~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (251)
+|+..|++.+||+. ++++|+|+|++++|+++| +...+....+.+.++.+|+.+.+|..
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~ 219 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVA 219 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhcccccccee
Confidence 88889999999999 699999999999999887 66678899999999999999887753
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=3e-40 Score=288.92 Aligned_cols=214 Identities=38% Similarity=0.750 Sum_probs=196.2
Q ss_pred eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEe
Q 025534 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG 110 (251)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG 110 (251)
|+.|..+++.+..+.++++|++.+|+||+|.|++++++|++|++||..|+++.+++.|+++++|++++.+++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCC
Q 025534 111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG 190 (251)
Q Consensus 111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~ 190 (251)
||+|.++++++++.+..++++||+|+++++.|+++++.....+.+++++++.+|++++++...++||+|++|++++. .
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999986567999999999999999999865434456899999999999999877789999999998776 4
Q ss_pred cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeec
Q 025534 191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLT 249 (251)
Q Consensus 191 p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (251)
+...|++.+|++. ++++|+|||+++++..+| +...+.++.+.++++++|+++.+|.
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~ 214 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYT 214 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5567899999999 799999999999998777 5678899999999999999999885
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=1.4e-39 Score=290.38 Aligned_cols=237 Identities=32% Similarity=0.467 Sum_probs=196.4
Q ss_pred eeecCCc-----ccccCCccCcCCCCcccc---ceEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcC
Q 025534 5 SCSNGIS-----QANGADAKNVALTGYRKS---CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG 76 (251)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg 76 (251)
+-+.||. |-|...+|||-+-+-..+ .|- +.+- ..+..+..++|++.+|+||+|.|+++..+ .|+|||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG 124 (374)
T PRK01581 50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EISL-KEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK 124 (374)
T ss_pred eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHHH-HHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence 3455664 556677788776443332 232 2221 12223556899999999999999999976 689999
Q ss_pred ccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh---cccCCC
Q 025534 77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF 153 (251)
Q Consensus 77 ~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~ 153 (251)
.+|+++.|+++|||+++|+++..+++|++||+||||+|.++++++++++..+|++||+|++|+++|++++. +++..+
T Consensus 125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 99999999999999999999999999999999999999999999998777899999999999999998543 344456
Q ss_pred CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHH
Q 025534 154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (251)
Q Consensus 154 ~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~ 233 (251)
.+||++++++|+++|++...++||+|++|+++|.. .+...+++.+||+. ++++|+|||+++++.++| +.....++.
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~ 280 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS 280 (374)
T ss_pred CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence 78999999999999998777899999999988763 23468999999999 799999999999999887 555677889
Q ss_pred HHHHHHhhCCceeeecc
Q 025534 234 IYNTLRQVFKCGYNLTL 250 (251)
Q Consensus 234 i~~~l~~~F~~v~~~~~ 250 (251)
+.++|+++|+.+.+|..
T Consensus 281 i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 281 IGNTIEHAGLTVKSYHT 297 (374)
T ss_pred HHHHHHHhCCceEEEEE
Confidence 99999999999998864
No 9
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=266.83 Aligned_cols=210 Identities=31% Similarity=0.503 Sum_probs=189.8
Q ss_pred eccccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchH
Q 025534 36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS 115 (251)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~ 115 (251)
++...++.+..+++||..+|+||+|-|.+.++. +.|++||..|.+++||++|||.++++++...+..++||++|+|+|.
T Consensus 224 it~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d-~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGL 302 (508)
T COG4262 224 ITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDD-LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGL 302 (508)
T ss_pred eeehHHHHhhcCceeeeccCccceEEEEEecCc-eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchH
Confidence 344456667788999999999999999998753 7789999999999999999999999988777788999999999999
Q ss_pred HHHHHHhcCCCcEEEEEECChHHHHHHHhch---hcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcc
Q 025534 116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC 192 (251)
Q Consensus 116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~---~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~ 192 (251)
.+++++|+|...+|+-||+||+|++++++.. ..|++.+.|||++++..|+++|+++..++||+||+|.+||.... .
T Consensus 303 AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~ 381 (508)
T COG4262 303 ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-I 381 (508)
T ss_pred HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-h
Confidence 9999999987899999999999999999653 36778899999999999999999988899999999999998432 3
Q ss_pred cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeeecc
Q 025534 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNLTL 250 (251)
Q Consensus 193 ~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (251)
..+|+.|||.. ++++|+++|++++|.++| +..++.++++.+|+++..-.++||.+
T Consensus 382 ~rlYS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv 436 (508)
T COG4262 382 GRLYSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHV 436 (508)
T ss_pred hhhhhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEE
Confidence 68999999999 899999999999999999 78889999999999999888999975
No 10
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=6.4e-35 Score=275.96 Aligned_cols=215 Identities=32% Similarity=0.536 Sum_probs=184.6
Q ss_pred eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecC-ce--eEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEE
Q 025534 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (251)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~-~g--~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL 107 (251)
|..+.........+..++++++.+|+||+|.|++++. +| +.|++||..|+++.+++.|+|+++|++++.++++++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL 302 (521)
T PRK03612 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL 302 (521)
T ss_pred HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 4444444444555677899999999999999999876 35 88999999999999999999999999998888999999
Q ss_pred EEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch--h-cccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (251)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~--~-~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~ 184 (251)
+||||+|.++++++++++..+|++||+|+++++.+++++ + .+...+++||++++++|++++++..+++||+|++|++
T Consensus 303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~ 382 (521)
T PRK03612 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP 382 (521)
T ss_pred EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence 999999999999999865579999999999999999953 3 3444567899999999999999877789999999998
Q ss_pred CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCceeeecc
Q 025534 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGYNLTL 250 (251)
Q Consensus 185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~ 250 (251)
++.... ..++++.|||+. ++++|+|||++++|..+| +.+.+.++++.++++++ | .+.+|..
T Consensus 383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~ 444 (521)
T PRK03612 383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHV 444 (521)
T ss_pred CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEe
Confidence 876222 257999999999 799999999999999888 56788899999999999 8 7888764
No 11
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=241.02 Aligned_cols=222 Identities=32% Similarity=0.612 Sum_probs=205.5
Q ss_pred CCCCccccceEEeeecc-----ccceeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhH
Q 025534 22 ALTGYRKSCWYEEEIEE-----NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA 96 (251)
Q Consensus 22 ~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~ 96 (251)
+..+....+|+.|.... +....+.++++++.++|.||++.|+++.-+|+.|.+||..|.++++++.|.||++|+|
T Consensus 36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~ 115 (337)
T KOG1562|consen 36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA 115 (337)
T ss_pred cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence 56778889999988763 7888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCc
Q 025534 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES 175 (251)
Q Consensus 97 ~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~ 175 (251)
++.+++|++||+||+|+|++.++..+|..+..++.+|+|..+++..++|++.....++++++.++.+|++.|++.. .++
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 9999999999999999999999999998889999999999999999999997666799999999999999999876 589
Q ss_pred eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce-eee
Q 025534 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG-YNL 248 (251)
Q Consensus 176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v-~~~ 248 (251)
||+||.|+.+|. +|+..+|.+.+|+. +++.||+||+++++..+- |...+...+..+..+.+|+.+ +||
T Consensus 196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ 264 (337)
T KOG1562|consen 196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAI 264 (337)
T ss_pred ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceee
Confidence 999999999998 88889999999999 899999999999998654 888899999999999999966 354
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.95 E-value=1.1e-26 Score=202.34 Aligned_cols=181 Identities=22% Similarity=0.379 Sum_probs=147.2
Q ss_pred EeecCCCcEEEEEecCceeEEEEcCc-cccc----ccc--chhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcC
Q 025534 52 TGETRYQDIALLDTKPFGKALVIDGK-LQSA----EVD--EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK 124 (251)
Q Consensus 52 ~~~s~~~~i~v~~~~~~g~~l~ldg~-~q~~----~~~--~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~ 124 (251)
-.++.|++|.|+|... .|+|.+|+. .|+. .|. .+.|+++|.. .+...+++++||+||||+|.++..++++.
T Consensus 11 ~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 11 PAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred cccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence 4567799999999886 589999884 6764 222 3468887753 34445678999999999999999998876
Q ss_pred CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHH
Q 025534 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204 (251)
Q Consensus 125 ~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~ 204 (251)
+..+|++||+||++++.|+++|..+. .+++++++++|+++++....++||+|++|.++.. .+...+.+.+|++.
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~- 162 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD- 162 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH-
Confidence 66799999999999999999987643 3589999999999999876789999999987644 33357889999999
Q ss_pred HcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCce
Q 025534 205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG 245 (251)
Q Consensus 205 ~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (251)
++++|+|||++++|. +.....+..++++++++|+++
T Consensus 163 ~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~ 198 (262)
T PRK04457 163 CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGR 198 (262)
T ss_pred HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCc
Confidence 699999999999986 333456788899999999863
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.76 E-value=2.4e-17 Score=137.81 Aligned_cols=166 Identities=22% Similarity=0.268 Sum_probs=134.2
Q ss_pred eEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc
Q 025534 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (251)
Q Consensus 70 ~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~ 149 (251)
-++.+||..+..+.....+.+++......-..++.+|||.+.|-|.++.+.++. ++.+|..||.||.++++|.-+ +++
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence 467899987776655566777777665544457899999999999999999996 556999999999999999876 333
Q ss_pred cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCC-CCC
Q 025534 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH 227 (251)
Q Consensus 150 ~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~-~~~ 227 (251)
.+ +...+++++.+|+.+++++. +++||+||.|||--. .+.+||+.+||++ +.++|+|||.++-.++.|+. +..
T Consensus 180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 32 23458999999999999875 477999999998533 2358999999999 89999999999988888863 345
Q ss_pred hHHHHHHHHHHHhhC
Q 025534 228 TEVFSCIYNTLRQVF 242 (251)
Q Consensus 228 ~~~~~~i~~~l~~~F 242 (251)
.+..+.+.+.|+++.
T Consensus 255 ~d~~~gVa~RLr~vG 269 (287)
T COG2521 255 LDLPKGVAERLRRVG 269 (287)
T ss_pred CChhHHHHHHHHhcC
Confidence 678889999999983
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=1.1e-16 Score=120.93 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=84.2
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+.+|||||||+|.++.++++..+..+|++||+||++++.|++++...+ ..++++++++|+ .+.....++||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 579999999999999999994345799999999999999999984322 458999999999 4444445789999998
Q ss_pred C-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 183 L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 183 ~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
. ..+. ... .-...++++. ++++|+|||+++++.
T Consensus 78 ~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 7 2211 010 0123468888 799999999999864
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=129.44 Aligned_cols=145 Identities=20% Similarity=0.306 Sum_probs=109.7
Q ss_pred chhHH-HHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc
Q 025534 85 EFIYH-ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN 163 (251)
Q Consensus 85 ~~~y~-e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~ 163 (251)
.+.|. +.+....+...+..++|||||||.|.++..++++.+..+|++||+++++.+.|++++.++. -.+|++++++
T Consensus 26 ~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~ 102 (248)
T COG4123 26 GFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEA 102 (248)
T ss_pred ccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehh
Confidence 34443 3333333333445799999999999999999987444799999999999999999998764 4589999999
Q ss_pred chHHHHhcCC-CceeEEEEcCCCCCC--C-Cc--c-------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHH
Q 025534 164 DARAELESRK-ESYDVIIGDLADPIE--G-GP--C-------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (251)
Q Consensus 164 D~~~~l~~~~-~~fD~Ii~D~~~~~~--~-~p--~-------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~ 230 (251)
|.-+|.+... .+||+|++|||.... . .+ . ..+.-.++++. ++++|||||.+.+ .++++.
T Consensus 103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~-------V~r~er 174 (248)
T COG4123 103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAF-------VHRPER 174 (248)
T ss_pred hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEE-------EecHHH
Confidence 9999987644 469999999983211 0 11 0 12223678887 7999999999987 356778
Q ss_pred HHHHHHHHHh
Q 025534 231 FSCIYNTLRQ 240 (251)
Q Consensus 231 ~~~i~~~l~~ 240 (251)
+.+++..|++
T Consensus 175 l~ei~~~l~~ 184 (248)
T COG4123 175 LAEIIELLKS 184 (248)
T ss_pred HHHHHHHHHh
Confidence 8899999997
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=3e-15 Score=114.06 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=86.0
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~ 181 (251)
+.+|||+|||+|.++..+++.. ..+++++|+||..+++++++++..+ ...+++++++|+++.... ..++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEE
Confidence 3589999999999999999876 5799999999999999999988653 346899999999998733 4689999999
Q ss_pred cCCCCCC-C-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIE-G-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~-~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+|.... . .....-...+|++. +.++|+|||++++.+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence 9984321 0 11112234689999 799999999998753
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=1.8e-15 Score=123.69 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
..++|||+|||+|.++..++++.+..+|+++|+|+.+++.+++++..++ -.+++++..|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----cccccccccccccccc--ccceeEEEE
Confidence 6689999999999999999997665689999999999999999998764 1239999999877653 589999999
Q ss_pred cCCCCCCCCcc-cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~-~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|||... +.. ......+|++. ++++|+|||.+++-.
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVI 140 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEe
Confidence 998433 211 12234788998 799999999886544
No 18
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.55 E-value=1.9e-13 Score=114.70 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=96.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~I 179 (251)
+..+|||||||+|..+..+++..+..+|++||+++.+++.|++++..++ .++++++++|+.+.+. ..+++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence 5678999999999999999876555689999999999999999876442 2679999999944443 235789999
Q ss_pred EEcCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 180 i~D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+++.++|+...+. .......+++. +.++|+|||++++.+. .......+.+.+++.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE 172 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence 9987666532111 12234789999 7999999999998642 345566677777653
No 19
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=2.1e-13 Score=113.77 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=99.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~I 179 (251)
+..+|||||||+|.++..+++..+..++++||+++.+++.|+++....+ -++++++.+|+.++... ..+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 4568999999999999988886556799999999999999998876432 25899999999887643 23589999
Q ss_pred EEcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 180 i~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+++.++||.... ...+...++++. +.++|+|||.+.+.+. ....+..+.+.+.+.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 999988873221 123455789999 7999999999988652 344566666776654
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=2.1e-13 Score=113.17 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=83.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|+++...++ -++++++.+|+.++. . .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCC-C-CCCccEEE
Confidence 44789999999999999988875455799999999999999999887553 235999999998853 2 57899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
++... . -.++++. +.+.|+|||++++..+
T Consensus 118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKG 146 (187)
T ss_pred Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeC
Confidence 97531 1 1478888 7999999999998754
No 21
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.52 E-value=1.1e-12 Score=120.51 Aligned_cols=126 Identities=25% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~ 178 (251)
++++|||+|||+|+++..++.. +..+|++||+|+.+++.|++++..++ +...+++++.+|++++++. .+++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5789999999999998876664 45699999999999999999998774 2224899999999999854 2468999
Q ss_pred EEEcCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534 179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~ 235 (251)
|++|||.-.. .. ..+. -.++++. +.++|+|||++++-++++ ....+.+..++
T Consensus 297 VilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~--~~~~~~f~~~v 353 (396)
T PRK15128 297 IVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG--LMTSDLFQKII 353 (396)
T ss_pred EEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC--cCCHHHHHHHH
Confidence 9999984221 11 1111 1244455 578999999999866655 33444444443
No 22
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.51 E-value=5.7e-13 Score=121.41 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=92.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~ 178 (251)
++++||++-|-||+++.+++.. ++.+||.||+|...+++|++++.+|+ +...+++++++|+++|++.. +++||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 4899999999999999998884 66799999999999999999999986 35578999999999999763 459999
Q ss_pred EEEcCCCCCCCCcccCCcc-----HHHHHHHHcccCCCCcEEEEecCCC
Q 025534 179 IIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~-----~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
||+|||.-.. ++. ..+. .+.... +.++|+|||++++-+++.
T Consensus 294 IilDPPsF~r-~k~-~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFAR-SKK-QEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCccccc-Ccc-cchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence 9999985332 221 1221 244555 479999999999877655
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=3.9e-13 Score=110.98 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=82.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||+|||+|.++..++...+..+|++||+|+.+++.++++....+ .++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999888765555789999999999999998876442 246999999998852 3478999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+... . -.++++. +.+.|+|||++++..++
T Consensus 116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKGK 144 (181)
T ss_pred hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcCC
Confidence 8521 1 1367787 69999999999987643
No 24
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=2e-13 Score=124.39 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=93.6
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
..+|||||||+|.++..+++..+..+|++||+|+.+++.|++++..+... ...+++++.+|+...+ .+++||+|++|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence 46999999999999999988755679999999999999999998755311 1247899999987654 23589999999
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (251)
||.+........ ...++++. ++++|+|||.+.+-... .. .....|++.|+.+.
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~l----~y~~~L~~~fg~~~ 358 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----HL----DYFHKLKKIFGNCT 358 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----Cc----CHHHHHHHHcCCce
Confidence 885442111111 23578888 79999999998875421 11 23345556666553
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.49 E-value=1.1e-13 Score=110.68 Aligned_cols=106 Identities=23% Similarity=0.330 Sum_probs=83.3
Q ss_pred CCCeEEEEecCchHHHHHHH-hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I 179 (251)
+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+...+ -++++++++|..+ +... .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeEE
Confidence 56899999999999999999 44455799999999999999999876442 3489999999999 5431 2789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++.+.++. + ....+++. +.+.|+++|++++..
T Consensus 78 ~~~~~l~~~--~----~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHHF--P----DPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGGT--S----HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcCchhhc--c----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 999653221 1 12368888 799999999998765
No 26
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.6e-13 Score=118.58 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=95.1
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
..+|||+|||.|.++..+++..+..++|.||+|...++.||+++..|+ -++..++.+|..+-+. ++||+|++|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~s~~~~~v~---~kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASNLYEPVE---GKFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEEeccccccc---ccccEEEeC
Confidence 459999999999999999998777899999999999999999998764 2333788888766543 499999999
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (251)
||-+..... .+-...++++. .+++|++||.|.+-... . ......|++.|.+|.
T Consensus 232 PPfh~G~~v-~~~~~~~~i~~-A~~~L~~gGeL~iVan~---~------l~y~~~L~~~Fg~v~ 284 (300)
T COG2813 232 PPFHAGKAV-VHSLAQEIIAA-AARHLKPGGELWIVANR---H------LPYEKKLKELFGNVE 284 (300)
T ss_pred CCccCCcch-hHHHHHHHHHH-HHHhhccCCEEEEEEcC---C------CChHHHHHHhcCCEE
Confidence 986642111 12234589999 79999999977654321 1 133457778888664
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=2e-12 Score=114.02 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=85.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|++++..++ ...+++++.+|+.+.+. .++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEE
Confidence 4578999999999999999987555699999999999999999987553 23589999999877652 357999999
Q ss_pred cCCCCCCC-----------CcccCC--------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534 182 DLADPIEG-----------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 182 D~~~~~~~-----------~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
|||.-... .|...+ +...+++. +.++|+|||.+++..+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 98731100 111111 12456777 6899999999999875
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.46 E-value=4.8e-13 Score=102.34 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=83.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+..+|||+|||+|..+..+++..+..+|+++|+++.+++.+++++...+ .++++++.+|+...+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence 34579999999999999999987544799999999999999999876442 35789999997754433346899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++.... . ..++++. +.+.|+|||.++++.
T Consensus 94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence 974311 1 2478898 799999999999864
No 29
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.7e-12 Score=114.13 Aligned_cols=141 Identities=22% Similarity=0.325 Sum_probs=95.7
Q ss_pred eeEEEEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc
Q 025534 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (251)
Q Consensus 69 g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~ 148 (251)
|..+.++-.+-...++.....+.+. ..... .+.+|||||||+|.++..+++..+..+|+++|+|+.++++|+++...
T Consensus 80 gl~~~v~~~vliPr~dTe~Lve~~l--~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 80 GLRFKVDEGVLIPRPDTELLVEAAL--ALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred ceeeeeCCCceecCCchHHHHHHHH--Hhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 4555566555454455433333322 11111 12279999999999999999987667999999999999999999886
Q ss_pred ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------cHHHHHHHHcccC
Q 025534 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRL 209 (251)
Q Consensus 149 ~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~----------~~p~~~l~--------~~ef~~~~~~~~L 209 (251)
++ . .++.++.+|.++-+ .++||+|++|||. |.. ..|...|+ ...|... +.+.|
T Consensus 157 ~~---l-~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~-a~~~l 228 (280)
T COG2890 157 NG---L-VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE-APDIL 228 (280)
T ss_pred cC---C-ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh-hHHHc
Confidence 64 1 56777777766554 3599999999983 221 11211111 2456666 68999
Q ss_pred CCCcEEEEecC
Q 025534 210 NPEGIFVTQAG 220 (251)
Q Consensus 210 ~pgG~l~~~~~ 220 (251)
+|||.+++..+
T Consensus 229 ~~~g~l~le~g 239 (280)
T COG2890 229 KPGGVLILEIG 239 (280)
T ss_pred CCCcEEEEEEC
Confidence 99999999875
No 30
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=110.19 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=88.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~fD 177 (251)
..+++||+||++.|..+.+++.. +...+++.+|+|++.++.|++++...+ -+++++++. +|+.+.+.. ..++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCcc
Confidence 47899999999999999999885 436799999999999999999997554 457799999 699999975 468999
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+||+|+... ..++||+. +.++|+|||++++
T Consensus 135 liFIDadK~---------~yp~~le~-~~~lLr~GGliv~ 164 (219)
T COG4122 135 LVFIDADKA---------DYPEYLER-ALPLLRPGGLIVA 164 (219)
T ss_pred EEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEE
Confidence 999997422 23589999 6899999999986
No 31
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=2.1e-12 Score=117.48 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=101.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 180 (251)
....+||||||+|..+..+++..+...+++||+++.+++.|.+.....+ -++++++.+|++.++.. .++.+|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 4568999999999999999886556799999999999999988876442 35799999999876543 357899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+..++||...+...+...+|++. ++++|+|||.+.+.+. ..+.+..+++.+.+.
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL 251 (390)
T ss_pred EeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence 99999985333335667899999 7999999999998763 345566666665543
No 32
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.45 E-value=4.8e-12 Score=105.97 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=96.8
Q ss_pred cEEEEEecCceeEEEE-cCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChH
Q 025534 59 DIALLDTKPFGKALVI-DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (251)
Q Consensus 59 ~i~v~~~~~~g~~l~l-dg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (251)
.++|+..+..|+.|.. ++.. . .+....-.+.+.. .+.......+|||+|||+|.++.+++... ..+|++||+|++
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~-~-Rp~~d~v~e~l~~-~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPG-L-RPTTDRVRETLFN-WLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCC-c-CcCCHHHHHHHHH-HHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 4778877766777643 1110 1 1111111122221 11111345799999999999999766643 479999999999
Q ss_pred HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHc--ccCCCCcEE
Q 025534 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIF 215 (251)
Q Consensus 138 vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~--~~L~pgG~l 215 (251)
+++.+++++..++ -.+++++.+|+.+++....++||+|++|||... + + ..+.++. +. ..|+|+|++
T Consensus 88 a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv 155 (199)
T PRK10909 88 VAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALI 155 (199)
T ss_pred HHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEE
Confidence 9999999987653 247999999999988544457999999998432 1 1 2334444 33 458999999
Q ss_pred EEecC
Q 025534 216 VTQAG 220 (251)
Q Consensus 216 ~~~~~ 220 (251)
++...
T Consensus 156 ~ve~~ 160 (199)
T PRK10909 156 YVESE 160 (199)
T ss_pred EEEec
Confidence 98763
No 33
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.45 E-value=5.2e-13 Score=114.60 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=84.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~ 174 (251)
.++++||+||||+|..+..+++. ++..+|+++|+|++.++.|++++...+ -..+++++.+|+.+.+... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 36789999999999988888764 445799999999999999999997654 2468999999999987541 36
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+||+|++|...+. -.++++. +.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~---------y~~~~~~-~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN---------YVHFHEQ-LLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCeEEEE
Confidence 8999999975321 1367888 6899999999886
No 34
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.45 E-value=3e-12 Score=117.29 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=82.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++..+|||+|||+|.++..+++..+..+|+++|+|+++++.|+++...++ .+++++.+|..+......++||+|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEE
Confidence 34569999999999999988875455799999999999999999986542 3799999998664211235799999
Q ss_pred EcCCC-CCC----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~-~~~----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|||. +.. ..|...|+ -+.+++. +.++|+|||.+++..+
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~-a~~~LkpgG~lilEiG 382 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQG-APDRLAEGGFLLLEHG 382 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHH-HHHhcCCCcEEEEEEC
Confidence 99973 110 01111122 1244555 4689999999988764
No 35
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.44 E-value=6.8e-12 Score=104.89 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=93.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++..++ ...+++++.+|+.+++....++||.|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhcCCCCCEE
Confidence 45689999999999999988774 334689999999999999999876542 13579999999988876555789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+++.... . -.++++. +.++|+|||.+++... ..+.+..+...|++.
T Consensus 116 ~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 116 FIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENI 161 (198)
T ss_pred EECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHc
Confidence 9964211 1 2467888 7899999999987542 345567777777654
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=113.12 Aligned_cols=106 Identities=22% Similarity=0.351 Sum_probs=83.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
..+.+|||+|||+|.++..+++. + .+|+++|+++++++.|+++....+ ..++++++++|+.+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g-~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G-HQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 45689999999999999999986 3 589999999999999999876432 246899999999886434457899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+...-++...| ..+++. +.+.|||||++++.
T Consensus 118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence 87542221122 367888 79999999999764
No 37
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2.4e-12 Score=110.12 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=84.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||||-++..+++..+..+|+++|+++.|++.+++.....+ ...++++.+||.+ |.-.+++||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence 36899999999999999999997666899999999999999999876321 1239999999876 456789999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+.-.-.+... -...+++ +.|+|||||++++..
T Consensus 125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence 9754322111 2467888 799999999887654
No 38
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=5e-12 Score=112.67 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=85.2
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ ...+++++++|+.+.+. .++||+|++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 78999999999999999886555799999999999999999987543 23579999999887653 35799999998
Q ss_pred CCCCC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534 184 ADPIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 184 ~~~~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
|.-.. ..|...++ ...+++. +.++|+|||.+++..+
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 73110 01211111 2466777 6899999999999865
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.43 E-value=8.1e-13 Score=109.75 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=90.1
Q ss_pred HHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (251)
Q Consensus 90 e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l 169 (251)
+.+.+++. ..+.+|.|||||.|..+..|+++.+.+.|+++|.|++|++.|++.+ |++++..+|.++|
T Consensus 21 dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w- 87 (257)
T COG4106 21 DLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW- 87 (257)
T ss_pred HHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc-
Confidence 45555554 3578999999999999999999878899999999999999998763 6789999999998
Q ss_pred hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+.....|+|+.|+.-+|. | . -.+.+.. +...|+|||++++|+
T Consensus 88 -~p~~~~dllfaNAvlqWl--p-d---H~~ll~r-L~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 -KPEQPTDLLFANAVLQWL--P-D---HPELLPR-LVSQLAPGGVLAVQM 129 (257)
T ss_pred -CCCCccchhhhhhhhhhc--c-c---cHHHHHH-HHHhhCCCceEEEEC
Confidence 345789999999876662 2 1 1366777 688999999999997
No 40
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.42 E-value=6.8e-12 Score=110.65 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=84.3
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
.+|||+|||+|.++..+++..+..+|+++|+++++++.|+++...++ ...+++++.+|..+.+. .++||+|++||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECC
Confidence 68999999999999999987555799999999999999999976543 23469999999877542 24899999998
Q ss_pred CCCCC-----------CCcccCC--------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 184 ADPIE-----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 184 ~~~~~-----------~~p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|.-.. ..|...| +.+.+++. +.+.|+|||.+++..+.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~-a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL-APDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc
Confidence 73111 0111111 12456676 67899999999998753
No 41
>PLN02476 O-methyltransferase
Probab=99.42 E-value=1.8e-12 Score=113.38 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=86.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~ 174 (251)
.++++||+||+++|..+.++++. ++..+|+.+|.|++..+.|++++...+ ..++++++.+|+.+.+.+. .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 46899999999999999998874 334689999999999999999998654 2469999999999988642 36
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+||+|++|+.... ..++|+. +.++|+|||++++.
T Consensus 194 ~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence 8999999975321 2478888 68999999998864
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=4.5e-12 Score=104.92 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.+++++..++ -++++++.+|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEEE
Confidence 46689999999999999999886555799999999999999999876542 247999999975433 36899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++.... ...++++. +.+.|+|||.++++.
T Consensus 103 ~~~~~~---------~~~~~l~~-~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 103 IGGSGG---------NLTAIIDW-SLAHLHPGGRLVLTF 131 (187)
T ss_pred ECCCcc---------CHHHHHHH-HHHhcCCCeEEEEEE
Confidence 974311 12467888 799999999998864
No 43
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=112.87 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++. +++++.+|+.++. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence 456899999999999999998864446899999999999999762 4788999987763 346899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++..-++... ...+++. ++++|||||.+++..
T Consensus 95 ~~~~l~~~~d------~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPE------HADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCC------HHHHHHH-HHHhCCCCcEEEEEc
Confidence 9876444211 2578888 799999999998864
No 44
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.41 E-value=8.6e-13 Score=110.90 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=84.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~ 174 (251)
.++++||+||++.|..+.++++. ++..+|+.+|+|++..+.|++++...+ ...+++++.+|+.+++.+. .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 36899999999999999999975 445799999999999999999997543 2469999999999988641 24
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+||+|++|.... .-.++|+. +.++|+|||++++.
T Consensus 121 ~fD~VFiDa~K~---------~y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKR---------NYLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEccccc---------chhhHHHH-HhhhccCCeEEEEc
Confidence 899999997421 12478888 68999999999874
No 45
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=8.6e-12 Score=102.02 Aligned_cols=120 Identities=24% Similarity=0.224 Sum_probs=98.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+..+++|||||+|+++.+++...+..+|+++|-|+++++..+++....+ -++++++.+|+-+.+.+.+ ++|.|+
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCCC-CCCEEE
Confidence 35578999999999999999976667899999999999999999976442 4799999999999997654 899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (251)
+.-.. --.+.++. +..+|+|||++++|.. ..+....+++.|++.-
T Consensus 108 IGGg~----------~i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~g 152 (187)
T COG2242 108 IGGGG----------NIEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQLG 152 (187)
T ss_pred ECCCC----------CHHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHcC
Confidence 98431 12477888 6899999999999963 3566777778887653
No 46
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.41 E-value=7.8e-12 Score=108.41 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii~ 181 (251)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..+ +++++.+|..+++.. ..++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEE
Confidence 46899999999999999887644468999999999999999998654 247899999887643 2357999999
Q ss_pred cCCC-CCC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 182 DLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 182 D~~~-~~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
|+|. +.. ..|...+. ..++++. +.++|+|||.+++..+. +...++...|++
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~-------~~~~~v~~~l~~ 230 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSE-------RQAPLAVEAFAR 230 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc-------chHHHHHHHHHH
Confidence 9973 210 01111111 2466776 68999999999987532 123455555654
No 47
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.40 E-value=3.3e-12 Score=125.40 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=89.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++ +...+++++.+|++++++..+++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 5789999999999999999985 55689999999999999999998775 22258999999999998655678999999
Q ss_pred cCCCCCCCCcccCCc-----cHHHHHHHHcccCCCCcEEEEecCC
Q 025534 182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 182 D~~~~~~~~p~~~l~-----~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|||.-.........+ -.+++.. +.++|+|||++++.+++
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence 997422100000111 1346666 57899999999886654
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=1.2e-11 Score=106.41 Aligned_cols=113 Identities=18% Similarity=0.289 Sum_probs=84.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
..+.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++...+ .++++++.+|+.+.+ ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence 34569999999999999999986555699999999999999999876542 247999999987754 247899999
Q ss_pred EcCCCCCCCC------------cccCC--------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGG------------PCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~------------p~~~l--------~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|+|...... |...+ .-..+++. +.+.|+|||.+++..+
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG 218 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 9987321100 00000 01357777 6899999999998753
No 49
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=2.2e-12 Score=111.51 Aligned_cols=108 Identities=17% Similarity=0.289 Sum_probs=81.3
Q ss_pred CCCCeEEEEecCchHHHHHHHh--cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
++..+|||||||+|..+..+++ ..+..++++||+++.|++.|++++...+ ...+++++.+|+.+.. ...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence 4668999999999999888876 2345799999999999999999876432 2358999999987642 246999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++...-+.. .+ -....+++. +++.|+|||.+++..
T Consensus 129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9987543221 11 112468898 799999999998753
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=3.2e-12 Score=115.42 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ -..+++.+|+...+ .++||+|++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEEC
Confidence 468999999999999999987555689999999999999999887653 23578888876543 4789999999
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++.+..... ..-...++++. +.++|+|||.+.+-.
T Consensus 269 PPFH~g~~~-~~~~~~~~i~~-a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQT-SLDAAQTLIRG-AVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccc-cHHHHHHHHHH-HHHhcCcCCEEEEEE
Confidence 875541111 01123688998 799999999887654
No 51
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5e-12 Score=107.76 Aligned_cols=122 Identities=23% Similarity=0.321 Sum_probs=99.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+||+.|.|+|.++..|++. .+..+|+.+|+.++..+.|++++...+ -..++++..+|..+.... +.||+|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~---l~d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG---LGDRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc---cccceEEEeccccccccc--cccCEE
Confidence 46789999999999999999974 445799999999999999999987542 234599999999998743 499999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCce
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCG 245 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v 245 (251)
++|.++|| ++++. +++.|+|||.+++.+ |+ -+..+.....|++. |-+.
T Consensus 168 ~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P~----veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 168 FLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--PT----VEQVEKTVEALRERGFVDI 216 (256)
T ss_pred EEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--CC----HHHHHHHHHHHHhcCccch
Confidence 99999887 56778 799999999999875 32 45677888888877 5443
No 52
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.39 E-value=8.2e-12 Score=106.42 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=82.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.+++++... ..++++++.+|+.++. ...++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence 35689999999999999998875 34469999999999999999887533 2358999999987742 235789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++..-++. + ...++++. +.++|+|||.+++..
T Consensus 119 ~~~~~l~~~--~----~~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRNV--P----DYMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEecccccC--C----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence 987543321 1 12467888 699999999988654
No 53
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=3.4e-12 Score=110.65 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=82.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++ ++++++.+|+.++. ..++||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4568999999999999999987644579999999999999999863 46889999988764 346899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++..-++... ...+++. +.++|+|||.+++..
T Consensus 99 ~~~~l~~~~d------~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWLPD------HLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhCCC------HHHHHHH-HHHhcCCCcEEEEEC
Confidence 9876544211 2478898 799999999999875
No 54
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.38 E-value=1.2e-11 Score=117.25 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=83.0
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ ...+++++.+|..+.+. .++||+|++|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEEC
Confidence 468999999999999988875445799999999999999999976543 23589999999876552 3689999999
Q ss_pred CCCCC-C-----------CCcccCCc----c----HHHHHHHHcccCCCCcEEEEecC
Q 025534 183 LADPI-E-----------GGPCYKLY----T----KSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 183 ~~~~~-~-----------~~p~~~l~----~----~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|.-. . ..|...|+ . ..+++. +.++|+|||.+++..+
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig 270 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence 87311 0 01211222 1 234555 5789999999998764
No 55
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.38 E-value=1.3e-12 Score=112.00 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|.++..++++ .+..+|+++|+++.|++.|++.....+ ..+++++++|+.+. ...+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeEE
Confidence 45789999999999999999886 334699999999999999999876432 24899999999874 3456899999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
++...-.. -+ .-...+++ +.|+|||||.+++-
T Consensus 121 ~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il 152 (233)
T PF01209_consen 121 TCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL 152 (233)
T ss_dssp EEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred EHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence 98653221 11 12468888 79999999988764
No 56
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.38 E-value=7.6e-13 Score=96.14 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=73.5
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~ 186 (251)
||+|||+|..+..++++ +..+++++|+++++++.+++... ..+++++.+|+.++ .-.++.||+|++...-+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999998 45799999999999999999764 24567999998776 44568999999986532
Q ss_pred CCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+. -.-..++++ ++|.|||||++++
T Consensus 72 ~~------~~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL------EDPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence 21 113578898 7999999999875
No 57
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.38 E-value=3.9e-12 Score=111.73 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=87.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~ 178 (251)
.+.++||++-|-+|+++..+++. ++.+|+.||.|..+++++++++.+|+ ++..+++++.+|++++++. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 35789999999999999998874 67799999999999999999999886 3446899999999999864 3579999
Q ss_pred EEEcCCCCCCCCcccCCc--cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025534 179 IIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~--~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~ 235 (251)
||+|||.-.. +. ..+. -.+.... +.++|+|||.+++-++++. ...+.+.+++
T Consensus 199 IIlDPPsF~k-~~-~~~~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~~~ 252 (286)
T PF10672_consen 199 IILDPPSFAK-SK-FDLERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLEAV 252 (286)
T ss_dssp EEE--SSEES-ST-CEHHHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHHHH
T ss_pred EEECCCCCCC-CH-HHHHHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHHHH
Confidence 9999984321 11 1110 1235555 4789999999988777663 3444444433
No 58
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=2.5e-11 Score=106.01 Aligned_cols=113 Identities=20% Similarity=0.333 Sum_probs=84.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++... ...+++++.+|..+.+. .++||+|+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv 180 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV 180 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence 3567899999999999999988755579999999999999999987621 24689999999855432 46899999
Q ss_pred EcCCCCCC------------CCcccCCcc--------HHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIE------------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~------------~~p~~~l~~--------~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|+|.... ..|...++. ..+++. +.+.|+|||.+++..+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 99873110 011111211 456666 5799999999998764
No 59
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.8e-11 Score=100.58 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=103.5
Q ss_pred EEEEEecCceeEE-EEcCccccccccchhHHHHHHHhHhhc-CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChH
Q 025534 60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (251)
Q Consensus 60 i~v~~~~~~g~~l-~ldg~~q~~~~~~~~y~e~l~~~~~~~-~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (251)
++|+..+..||.| ..+|. .+.|....-.|.+.. .+.. .-.+.++||+-+|+|+++.+++.+ ++.+++.||.|.+
T Consensus 2 mRIi~G~~kgr~L~~p~~~--~~RPT~drVREalFN-il~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~ 77 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGP--GTRPTTDRVREALFN-ILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK 77 (187)
T ss_pred eEEEeccccCCcccCCCCC--CcCCCchHHHHHHHH-hccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence 4566666667766 34441 111222233455532 2222 246799999999999999999997 5789999999999
Q ss_pred HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc--eeEEEEcCCCCCCCCcccCCc--cHHHHHHHHcccCCCCc
Q 025534 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG 213 (251)
Q Consensus 138 vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~--fD~Ii~D~~~~~~~~p~~~l~--~~ef~~~~~~~~L~pgG 213 (251)
++...+++....+ ...+.+++..|+..++++...+ ||+|++|||... + +. ...+....-...|+|+|
T Consensus 78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~--~----l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK--G----LLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc--c----hhhHHHHHHHHHhcCCcCCCc
Confidence 9999999987543 2478999999999998776555 999999998653 1 22 12222210258899999
Q ss_pred EEEEecC
Q 025534 214 IFVTQAG 220 (251)
Q Consensus 214 ~l~~~~~ 220 (251)
.+++...
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999864
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.37 E-value=1.8e-11 Score=102.11 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=81.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
....+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++...+ .++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 35579999999999999998875444799999999999999999886542 24799999999775543334578888
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++.. .+ -.++++. +.++|+|||.+++..
T Consensus 115 ~~~~-----~~-----~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGG-----RP-----IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECC-----cC-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence 7642 11 2477888 789999999999875
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=1.4e-11 Score=101.19 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||+|||+|.++..+++... +|+++|+|+.+++.+++++..++ .+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence 3567899999999999999988642 89999999999999999987542 36899999976643 35899999
Q ss_pred EcCCCCCCCCcc---------------cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~---------------~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++++......+. ......++++. +.++|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEE
Confidence 998742211100 00013568888 799999999988764
No 62
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.36 E-value=3e-12 Score=108.33 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
..+.+|||+|||+|.++..+++. + ++|+++|++++.|+.|+.+...++ -.++.......+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence 36789999999999999999997 4 799999999999999999976543 2366777777776543 48999999
Q ss_pred EcCCCCCCCCcccCCcc-HHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYT-KSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~-~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+--- .+|+-+ ..|.+. +.+++||||++++.+
T Consensus 130 cmEV-------lEHv~dp~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 130 CMEV-------LEHVPDPESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred EhhH-------HHccCCHHHHHHH-HHHHcCCCcEEEEec
Confidence 8632 122222 358888 599999999998754
No 63
>PLN02244 tocopherol O-methyltransferase
Probab=99.36 E-value=4.1e-12 Score=114.77 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=82.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..+++..+ .+|++||+++.+++.+++.....+ ..++++++.+|+.+. ...+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence 3568999999999999999988653 699999999999999998765432 236799999998764 23457899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+....+. .+ ....++++ +.++|||||.+++..
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 8643222 11 12478898 799999999988753
No 64
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=6.2e-12 Score=109.62 Aligned_cols=109 Identities=14% Similarity=0.026 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|.++..+++. ++..+|++||++++|++.|++....... ...++++++++|+.+. ...+++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 45679999999999999988875 3346999999999999999876542110 0235899999998764 3345789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
++...-++... -.+++++ +.++|||||.+++-
T Consensus 150 ~~~~~l~~~~d------~~~~l~e-i~rvLkpGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRNVVD------RLKAMQE-MYRVLKPGSRVSIL 181 (261)
T ss_pred EEecccccCCC------HHHHHHH-HHHHcCcCcEEEEE
Confidence 98654332111 2478898 79999999998764
No 65
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=4.2e-12 Score=111.28 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||.|+++..+++..+ .+|++|.+|++..+.+++.+...+ ...++++...|.+++ +.+||.|+
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~Iv 132 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRIV 132 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEEE
Confidence 4678999999999999999999755 599999999999999999876443 346899999997764 34999999
Q ss_pred EcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+-- +.+. ++ -.-..||+. +.+.|+|||+++++.
T Consensus 133 Si~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 763 2322 21 123689999 799999999999876
No 66
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.34 E-value=5.3e-12 Score=113.00 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||||||+|.++..+++. + .+|++||+++++++.|++++.... ...+++++++|+.++. ..+++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g-~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G-ATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence 3468999999999999988874 3 689999999999999998865432 2357999999987753 33578999998
Q ss_pred cCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
... .+.. .| .+|++. ++++|||||.+++..
T Consensus 205 ~~vLeHv~-d~------~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVA-NP------AEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcC-CH------HHHHHH-HHHHcCCCcEEEEEE
Confidence 643 2221 22 478898 799999999998765
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=1.7e-11 Score=104.30 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=81.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+..+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++..++ .+++++.+|..+.+. .++||+|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEEE
Confidence 4579999999999999998886 34599999999999999999876542 358899999877643 468999999
Q ss_pred cCCCCCCCC-------cc--------cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGG-------PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~-------p~--------~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++...... +. .......+++. +.++|+|||++++..
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 976321100 00 00012457777 689999999988743
No 68
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1.2e-11 Score=106.77 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------C
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K 173 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~ 173 (251)
.++++||+||++.|..+.++++. ++..+|+.+|+|++..+.|+++|...+ ...+++++.+|+.+.+.+. .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccccC
Confidence 46789999999999999988874 445799999999999999999997543 2479999999999998652 2
Q ss_pred CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
++||+|++|.... ...++|+. +.++|+|||++++.
T Consensus 155 ~~fD~iFiDadK~---------~Y~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKD---------NYINYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHH---------HhHHHHHH-HHHhcCCCeEEEEc
Confidence 6899999996421 12478888 58999999999863
No 69
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=8.4e-12 Score=104.33 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=78.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++.....+ ..+++++..|..++- .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g-~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G-FDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEEE
Confidence 5689999999999999999986 3 599999999999999998776432 246889999987642 2467999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
...-++. .+ -....+++. +++.|+|||.+++
T Consensus 102 ~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 7543221 11 113578888 7999999998543
No 70
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.32 E-value=2.1e-12 Score=96.22 Aligned_cols=96 Identities=24% Similarity=0.428 Sum_probs=71.0
Q ss_pred EEEEecCchHHHHHHHhcC---CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
|||+|||+|..+..+++.. +..++++||+|+++++.+++++... .++++++++|+.++ ....++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999998763 2269999999999999999987642 24899999999885 4456799999993
Q ss_pred -C-CCCCCCCcccCCccHHHHHHHHcccCCCCc
Q 025534 183 -L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (251)
Q Consensus 183 -~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG 213 (251)
. ..+. .+ -....++++ +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 3 2221 11 113578898 799999998
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.32 E-value=2e-11 Score=107.43 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCeEEEEecCchHH-HHHHH-hcCCCcEEEEEECChHHHHHHHhchhc-ccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGEGST-AREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.+++|++||||.|.+ +..++ ++.+..+++++|+|+++++.||+++.. .+ -.++++|+.+|+.+... ..++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcCE
Confidence 789999999997744 33333 355567999999999999999999853 22 25789999999988532 2368999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++++...+... .-.+.++. +.++|+|||++++.+
T Consensus 199 VF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence 999954333111 12578898 799999999999876
No 72
>PLN02672 methionine S-methyltransferase
Probab=99.32 E-value=6.5e-11 Score=119.39 Aligned_cols=118 Identities=21% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC------------CCCCCeEEEEcchHHHHh
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA------------FSDPRLELVINDARAELE 170 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~------------~~~~rv~~~~~D~~~~l~ 170 (251)
+.+|||||||+|.++..+++..+..+|+++|+|+++++.|+++...++.. ....|++++++|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988655579999999999999999998764210 012479999999988774
Q ss_pred cCCCceeEEEEcCCC-CCC-----------CC---------cccCCcc-----------HHHHHHHHcccCCCCcEEEEe
Q 025534 171 SRKESYDVIIGDLAD-PIE-----------GG---------PCYKLYT-----------KSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 171 ~~~~~fD~Ii~D~~~-~~~-----------~~---------p~~~l~~-----------~ef~~~~~~~~L~pgG~l~~~ 218 (251)
....+||+|++|+|. +.. .. |...|+. +.+.+. ..++|+|||.++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEE
Confidence 333479999999982 100 01 1122322 345555 46899999999999
Q ss_pred cCC
Q 025534 219 AGP 221 (251)
Q Consensus 219 ~~~ 221 (251)
.+.
T Consensus 278 iG~ 280 (1082)
T PLN02672 278 MGG 280 (1082)
T ss_pred ECc
Confidence 863
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.32 E-value=8.1e-11 Score=104.02 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=88.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++ ...++++..+|.... ..++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~~---~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQP---IEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecccccc---cCCCceEEE
Confidence 35689999999999999888876 45699999999999999999987654 235677777763222 246899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCc
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (251)
++.... + ..+++.. +.+.|+|||.+++.. +. ......+.+.+++.|..
T Consensus 231 an~~~~----~-----l~~ll~~-~~~~LkpgG~li~sg-----i~-~~~~~~v~~~~~~~f~~ 278 (288)
T TIGR00406 231 ANILAE----V-----IKELYPQ-FSRLVKPGGWLILSG-----IL-ETQAQSVCDAYEQGFTV 278 (288)
T ss_pred EecCHH----H-----HHHHHHH-HHHHcCCCcEEEEEe-----Cc-HhHHHHHHHHHHccCce
Confidence 986421 1 1467888 799999999998753 11 23345666666665543
No 74
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.31 E-value=1.5e-11 Score=101.67 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=80.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD 177 (251)
..+.+|||+.+|+|+++.+++.+ ++.+|+.||.|+..++..++++...+ ...+++++..|+..++.+ ..++||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence 36789999999999999999986 57899999999999999999987442 234799999999998864 368999
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHH--cccCCCCcEEEEecC
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG 220 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~--~~~L~pgG~l~~~~~ 220 (251)
+|++|||... . +.-.+.++. + ...|+++|+++++..
T Consensus 117 iIflDPPY~~--~----~~~~~~l~~-l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAK--G----LYYEELLEL-LAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTS--C----HHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCccc--c----hHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence 9999997533 1 112345555 3 389999999999874
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=1.4e-11 Score=104.19 Aligned_cols=102 Identities=22% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||||||+|..+..+++..+ ..+|++||+++++++.|++++...+ ..+++++.+|+.+... ...+||+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I 150 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWE-PLAPYDRI 150 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCc-ccCCCCEE
Confidence 4568999999999999998888643 3479999999999999999987542 3579999999877543 23689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+++...+. . .+. +.+.|+|||++++..+
T Consensus 151 i~~~~~~~--~----------~~~-~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 151 YVTAAGPK--I----------PEA-LIDQLKEGGILVMPVG 178 (215)
T ss_pred EEcCCccc--c----------cHH-HHHhcCcCcEEEEEEc
Confidence 99865322 1 133 5678999999988654
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=1.4e-11 Score=103.56 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=77.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+..+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+ ...+++++.+|+.+.+.. ..+||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEEE
Confidence 45799999999999998887753 23589999999999999999886442 124799999999876532 46899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++...+. +.+. +.+.|+|||++++..
T Consensus 148 ~~~~~~~------------~~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST------------IPSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch------------hhHH-HHHhcCcCcEEEEEE
Confidence 9865321 1234 577899999998754
No 77
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.30 E-value=5.4e-11 Score=102.17 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
++..+|||||||+|..+..++++ .+..+++++|+++.+++.|++++.... ...+++++.+|+.++- .+.+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 45678999999999999988874 234799999999999999999875322 2357999999987652 246999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++...-++. .+ -.-..+++. ++++|+|||.+++..
T Consensus 126 v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred EeeecchhhC-CH---HHHHHHHHH-HHHhcCCCeEEEEee
Confidence 8886543321 11 012478898 799999999998763
No 78
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.29 E-value=3.2e-11 Score=100.71 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=96.7
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeEEEEc
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD 182 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~D 182 (251)
-+||||||.|.....+++..+...+.+||+....+..+.+..... .-+++.++++|+..++.. .+++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 799999999999998888656689999999999999988776543 347999999999998764 35799999999
Q ss_pred CCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 183 ~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
-|+||.... ...+.+.+|+.. +.++|+|||.+.+.+. ..+.+..+++.+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 999984322 257899999999 8999999999998763 356777778887774
No 79
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.29 E-value=3.4e-11 Score=103.76 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHh-cCCCce
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELE-SRKESY 176 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~-~~~~~f 176 (251)
..++.+||+-|.|+|+++..+++. .+..+|...|+.++-.+.|+++|...+ ...++++.+.|..+ -.. .....+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecceecccccccccCcc
Confidence 356799999999999999999974 445799999999999999999998654 35689999999863 222 224689
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccC-CCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCceeee
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGYNL 248 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L-~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~ 248 (251)
|.|++|.++||. .+.. +.+.| ++||++++.+ |+ .+...+....|++. |..+..+
T Consensus 115 DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P~----ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 115 DAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--PC----IEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--SS----HHHHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--CC----HHHHHHHHHHHHHCCCeeeEEE
Confidence 999999999883 2455 68889 8999999875 43 56677778888874 6554433
No 80
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=1.1e-12 Score=97.17 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=59.5
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~ 186 (251)
||||||+|.++..+++..+..+++++|+|+.+++.+++++..... ....++++...|..+. ...++||+|++...-+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence 799999999999999875668999999999999989888764320 0111333333333222 1225999999876533
Q ss_pred CCCCcccCCccHHHHHHHHcccCCCCcEE
Q 025534 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (251)
Q Consensus 187 ~~~~p~~~l~~~ef~~~~~~~~L~pgG~l 215 (251)
+.. ...++++. +++.|+|||+|
T Consensus 78 ~l~------~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHH-HTTT-TSS-EE
T ss_pred hhh------hHHHHHHH-HHHHcCCCCCC
Confidence 311 13588998 79999999986
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=2.8e-11 Score=102.36 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||||||+|.++..+++.. ...+|+++|+++++++.+++++...+ ..+++++.+|+..... ...+||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence 456899999999999998888753 23599999999999999999887442 3579999999876542 24689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+++...+. ..+. +.+.|+|||++++..+
T Consensus 150 ~~~~~~~~------------~~~~-l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 150 YVTAAGPD------------IPKP-LIEQLKDGGIMVIPVG 177 (212)
T ss_pred EECCCccc------------chHH-HHHhhCCCcEEEEEEc
Confidence 99854221 1134 4678999999988654
No 82
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.28 E-value=1.1e-11 Score=105.06 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=79.5
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
++|||||||+|..+..+++..+..+|+++|+++++++.+++++...+ ..++++++..|..+.. ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence 47999999999999998886544689999999999999999876432 3468999999975431 246899999754
Q ss_pred CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.-+. .+ ....+++. ++++|+|||.+++..
T Consensus 76 ~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK----DKMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC----CHHHHHHH-HHHHcCCCCEEEEEE
Confidence 3221 11 12578999 799999999988754
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.27 E-value=1.4e-10 Score=100.41 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=80.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||+|.++..+.+. +..+|+++|+|+.+++.|++++..++ ...++.+..+|. +||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~~~---------~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQGDL---------KADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccCCC---------CcCEEE
Confidence 46789999999999999887775 34579999999999999999987653 123444444332 799999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
++.... + ...+++. +.++|+|||.+++.... ......+.+.+++.
T Consensus 185 ani~~~----~-----~~~l~~~-~~~~LkpgG~lilsgi~------~~~~~~v~~~l~~~ 229 (250)
T PRK00517 185 ANILAN----P-----LLELAPD-LARLLKPGGRLILSGIL------EEQADEVLEAYEEA 229 (250)
T ss_pred EcCcHH----H-----HHHHHHH-HHHhcCCCcEEEEEECc------HhhHHHHHHHHHHC
Confidence 985421 1 1367777 78999999999986421 22344566666654
No 84
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.27 E-value=4.4e-11 Score=103.36 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||+|||+|.++..+.+. + .+++++|+++.+++.|+++.. ..+++.+|+... ...+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-G-SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence 4679999999999999888775 3 689999999999999998632 346788998663 233568999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+..-++... ..+++.+ +.++|+|||.+++..
T Consensus 110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence 876544212 2478888 799999999998764
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=5.5e-11 Score=98.86 Aligned_cols=107 Identities=20% Similarity=0.127 Sum_probs=82.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~ 178 (251)
...+|||++||+|.++.+++.+ +..+|++||+|+.+++.+++++..++ ...+++++.+|+.+++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCCCceE
Confidence 5689999999999999999997 45699999999999999999988664 2347999999999887532 235899
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~ 219 (251)
|+.|||... . + ..+.++.+. ...|+++|++++..
T Consensus 125 v~~DPPy~~--~----~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN--G----A-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC--C----c-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999997532 1 1 233444311 46899999999875
No 86
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=2.9e-11 Score=105.39 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=85.3
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..++.+|||||||.|+++.+++++.+ .+|++|++|++..+.+++.+...+ ...+++++..|-+++ .++||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~g---l~~~v~v~l~d~rd~----~e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARG---LEDNVEVRLQDYRDF----EEPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcC---CCcccEEEecccccc----cccccee
Confidence 35679999999999999999999865 699999999999999999876443 235899999997765 3569999
Q ss_pred EEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++-- +.+. ++ -.-.+||+. +++.|+|||++++++
T Consensus 142 vSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 142 VSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred eehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 9853 4443 22 123589999 799999999999886
No 87
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.26 E-value=6.3e-12 Score=115.58 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=112.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC------CCc
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------KES 175 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~~ 175 (251)
.+.++|++|.|+|++...+..+.+..++|+||+||++++.|++||.+.. +.|.+++..|+.+|++++ +..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhhhhHhhchHHHHHHhhccccccC
Confidence 4678999999999999988877666799999999999999999998764 348999999999999753 357
Q ss_pred eeEEEEcCC--CCC-CCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceeee
Q 025534 176 YDVIIGDLA--DPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYNL 248 (251)
Q Consensus 176 fD~Ii~D~~--~~~-~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (251)
||+++.|.- ++. ...|...+.+..+++. ++..|.|.|++++|..++ +......+...|+.+||+.+-+
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r----~~~~~~~~~~~l~~vf~~l~~~ 441 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTR----NSSFKDEVLMNLAKVFPQLYHH 441 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecC----CcchhHHHHHhhhhhhHHHhhh
Confidence 999999874 321 1234456667889998 899999999999998654 4556778889999999987644
No 88
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.25 E-value=3.4e-11 Score=105.08 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++.+.. .++++++.+|+.+. ...+++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEEEE
Confidence 4568999999999999998877543 5999999999999999987542 35799999997642 12347899999
Q ss_pred Ec-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+. ...+. .. -....+++. +.++|||||.+++..
T Consensus 123 s~~~l~h~--~~---~d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHL--SY---ADKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhC--CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 84 33222 10 012478888 799999999998754
No 89
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.4e-11 Score=100.48 Aligned_cols=100 Identities=25% Similarity=0.300 Sum_probs=82.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+||+||||+|..+.-+++.- .+|+.||++++..+.|++++...+ -.++.++++|+...... ..+||.|+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD~I~ 143 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYDRII 143 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcCEEE
Confidence 456899999999999999998874 499999999999999999987553 34699999999887643 47899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+....+. .| +. +.+.|+|||++++-.+
T Consensus 144 Vtaaa~~--vP----------~~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 144 VTAAAPE--VP----------EA-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EeeccCC--CC----------HH-HHHhcccCCEEEEEEc
Confidence 9986544 34 12 4567999999998765
No 90
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.25 E-value=3.8e-10 Score=98.52 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=93.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|+.+..+++.. ....|+++|+++..++.+++++...+ -.+++++..|+..+.. ..++||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEE
Confidence 345789999999999998887753 23589999999999999999987553 2469999999987643 33569999
Q ss_pred EEcCCCCCC----CCccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 180 IGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 180 i~D~~~~~~----~~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
++|+|.... ..|.. .. ...++++. +.+.|||||+++..+.+ + ..+....+.+.+-+.++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs---~-~~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCS---L-EPEENEAVVDYLLEKRP 219 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC---C-ChHHHHHHHHHHHHhCC
Confidence 999984321 11110 00 12457777 68999999999866543 2 23334455555555544
Q ss_pred c
Q 025534 244 C 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 220 ~ 220 (264)
T TIGR00446 220 D 220 (264)
T ss_pred C
Confidence 3
No 91
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=6.1e-11 Score=100.70 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=81.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|+.+.. ..+++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 34579999999999999999887555679999999999999988643 47889999987653 2357899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++...++... ...+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 9865443212 2468888 799999999998764
No 92
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=7.1e-12 Score=107.00 Aligned_cols=102 Identities=19% Similarity=0.336 Sum_probs=76.6
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCC---CeEEEEcchHHHHhcCCCceeEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~---rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
+++|||+|||+|.++..|++.. ++|+++|+++++|+.|+++..... .++.+ |+++.+.|+... .++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~----~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGL----TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhc----cccccee
Confidence 4789999999999999999974 699999999999999999943321 11222 577777876554 3569999
Q ss_pred EEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++--- .|.. .| ++|.+. +.++|+|+|.+++-+
T Consensus 163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEeee
Confidence 98632 3321 23 478887 799999999998754
No 93
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=6.2e-11 Score=103.62 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||||||+|..+..+++.. ...+|+++|+++.+++.|+++....+ .++++++.+|+.+. ...++.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l-~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL-PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC-CCCCCceeEE
Confidence 456899999999999887776642 33589999999999999999876432 25889999997653 3335689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+++...+. .+ .....+++ +.++|||||++++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98864322 11 12467888 79999999999874
No 94
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=2.3e-10 Score=106.47 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=93.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|+.+..++... +..+|+++|+++..++.+++++...+ -.+++++.+|+..+-....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCEE
Confidence 356799999999999998888753 34699999999999999999986442 2468999999987642334689999
Q ss_pred EEcCCCCCCC----Cccc--C--------C--ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 180 IGDLADPIEG----GPCY--K--------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 180 i~D~~~~~~~----~p~~--~--------l--~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
++|+|..... .|.. . + ...+.+.. +.+.|+|||.++.-+++. . ++.....++.+-+.+|
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~---~-~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV---T-KEENTEVVKRFVYEQK 386 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC---C-hhhCHHHHHHHHHhCC
Confidence 9999853211 1100 0 0 12556777 689999999998776543 2 3334444444434444
Q ss_pred c
Q 025534 244 C 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 387 ~ 387 (431)
T PRK14903 387 D 387 (431)
T ss_pred C
Confidence 3
No 95
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.23 E-value=5.8e-11 Score=100.24 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=87.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH------h-cC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------E-SR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l------~-~~ 172 (251)
.++.+|||||||+|..+..+++.. +..+|++||+++. . ..++++++++|+.+.- . ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456799999999999999988863 2358999999981 1 1256899999987641 1 12
Q ss_pred CCceeEEEEcCCCCCCCCcccCC-----ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534 173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN 247 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l-----~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (251)
.++||+|++|...++...+.... ...+.++. +.+.|+|||.+++.. + ..+.+..++..++..|..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence 47899999997432211121000 01457787 699999999999854 2 223466778888888887765
Q ss_pred e
Q 025534 248 L 248 (251)
Q Consensus 248 ~ 248 (251)
+
T Consensus 188 ~ 188 (209)
T PRK11188 188 R 188 (209)
T ss_pred E
Confidence 4
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=99.23 E-value=2.1e-10 Score=94.24 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=82.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||+|||+|.++..+++. + .+++++|+++++++.+++++..++ ..+.+++++.+|..+.+. .++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence 45678999999999999999887 3 699999999999999999876543 122238899999876543 34899999
Q ss_pred EcCCCCCCCCccc----------------CCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPCY----------------KLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~~----------------~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
++++.... .+.. ......++++ +.++|+|||.+++...
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEEc
Confidence 99763110 0100 0112467888 7899999998887653
No 97
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.23 E-value=5e-11 Score=99.52 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=75.1
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++.....+ -++++...|...+- .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g-~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~~--~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G-YDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAAA--LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhcc--ccCCCCEEEE
Confidence 4689999999999999999986 3 589999999999999998765332 13677778865431 2467999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
...-+.. .+ -...++++. ++++|+|||.+++
T Consensus 101 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~lli 131 (195)
T TIGR00477 101 TVVFMFL-QA---GRVPEIIAN-MQAHTRPGGYNLI 131 (195)
T ss_pred ecccccC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence 7543221 11 113478888 7999999998443
No 98
>PRK04266 fibrillarin; Provisional
Probab=99.22 E-value=1.4e-10 Score=99.09 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--hcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~~~~~~fD~ 178 (251)
.++.+|||+|||+|.++..+++..+..+|+++|+++++++.+++.... .+++.++.+|+.+.. ....++||+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCCE
Confidence 356799999999999999998864345899999999999977665431 257899999986421 112356999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC-CCCCC--CChHHHHHHHHHHHhh-CC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG-PAGIF--SHTEVFSCIYNTLRQV-FK 243 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~-~p~~~--~~~~~~~~i~~~l~~~-F~ 243 (251)
|++|..+++ . ...+++. +++.|||||.+++... .+..+ .....++...+.+++. |.
T Consensus 145 i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 145 IYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE 204 (226)
T ss_pred EEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence 999866433 1 1245677 6899999999887321 00001 1224455566777665 44
No 99
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.22 E-value=6.4e-11 Score=97.76 Aligned_cols=128 Identities=14% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.... .++|++++.|..++. +.++||+|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDLI 110 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDLI 110 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeEE
Confidence 3455899999999999999999874 6899999999999999998752 378999999998874 45899999
Q ss_pred EEcCCCCCCCCcccCCcc----HHHHHHHHcccCCCCcEEEEecCCC--C-CCCChHHHHHHHHHHHhhCCce
Q 025534 180 IGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPA--G-IFSHTEVFSCIYNTLRQVFKCG 245 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~----~ef~~~~~~~~L~pgG~l~~~~~~p--~-~~~~~~~~~~i~~~l~~~F~~v 245 (251)
++.-- ...|.. ..+.+. +.++|+|||.+++-.-.. + .|.+...-.++...|.+.+-.+
T Consensus 111 V~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~ 175 (201)
T PF05401_consen 111 VLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEV 175 (201)
T ss_dssp EEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEE
T ss_pred EEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhe
Confidence 98742 122322 236676 689999999998743100 0 0223334557777777766544
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=1.4e-10 Score=100.98 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=80.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
...+|||+|||+|.++..++++.+..+|++||+|+.+++.+++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 357899999999999988877643469999999999999999853 468999999998853 468999999
Q ss_pred cCCCCCCC---CcccCCc-----------cHHHHHHHHcccCCCCcEEEE-ecCCC
Q 025534 182 DLADPIEG---GPCYKLY-----------TKSFYEFVVKPRLNPEGIFVT-QAGPA 222 (251)
Q Consensus 182 D~~~~~~~---~p~~~l~-----------~~ef~~~~~~~~L~pgG~l~~-~~~~p 222 (251)
|+|..... .....-+ -.+++.. +...|+|+|.+.+ ..+.|
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEEEeccc
Confidence 99743210 0000011 2567788 7899999996654 33444
No 101
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=3.1e-10 Score=106.13 Aligned_cols=116 Identities=22% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.....++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCEE
Confidence 345789999999999999888753 34699999999999999999987543 1359999999987643223689999
Q ss_pred EEcCCCCCC----CCcccCC------------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 180 IGDLADPIE----GGPCYKL------------YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 180 i~D~~~~~~----~~p~~~l------------~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
++|++.... ..|.... ...++++. +.++|+|||.++..+.+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 381 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcCC
Confidence 999873211 0111000 12467888 68999999999876543
No 102
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.4e-11 Score=105.79 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=87.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||+|||+|.++..+++. ++.+|.++|+||..++.|++++..|+. .+.++.-..+..... ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc--ccCcccEEE
Confidence 47899999999999999999997 567899999999999999999988752 222333333333332 236999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh-hCCc
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKC 244 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~ 244 (251)
.|... .|. ..+... ++++|+|||.+++.. .. .+....+...+.+ -|..
T Consensus 235 ANILA----~vl-----~~La~~-~~~~lkpgg~lIlSG-----Il-~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 235 ANILA----EVL-----VELAPD-IKRLLKPGGRLILSG-----IL-EDQAESVAEAYEQAGFEV 283 (300)
T ss_pred ehhhH----HHH-----HHHHHH-HHHHcCCCceEEEEe-----eh-HhHHHHHHHHHHhCCCeE
Confidence 99742 231 366777 789999999999754 22 2335666677743 4543
No 103
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=3.9e-10 Score=105.44 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ..++||+|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~V 322 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDAI 322 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCEE
Confidence 345799999999999988877642 23589999999999999999986542 246999999998864 34689999
Q ss_pred EEcCCCCCC----CCcc--cCC----------ccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 180 IGDLADPIE----GGPC--YKL----------YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 180 i~D~~~~~~----~~p~--~~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
++|+|.... ..|. +.+ ...+++.. +.+.|+|||+++..+++.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence 999874221 0110 011 12357787 689999999999887653
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.20 E-value=1.5e-10 Score=104.08 Aligned_cols=111 Identities=21% Similarity=0.068 Sum_probs=83.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||+|+++.+++.. + .+++++|+|+.+++.+++++...+ .++++++.+|+.+. ....++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~-~-~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM-G-AKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh-C-CeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence 45678999999999999887764 3 689999999999999999886543 23489999998874 33357899999
Q ss_pred EcCCCCCCCCcccC---CccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~---l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+|+|.......... -...++++. ++++|+|||.+++..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 99874321111111 113578888 799999999988765
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=4e-10 Score=104.88 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=84.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
.++.+|||+|||+|+.+.++++..+..+|+++|+++.+++.+++++...+ .+++++.+|+.+.... ..++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence 35689999999999999999886433699999999999999999987543 2478999999764321 24679999
Q ss_pred EEcCCCCCC----CCcccC-Cc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 025534 180 IGDLADPIE----GGPCYK-LY-----------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 180 i~D~~~~~~----~~p~~~-l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
++|+|.... ..|... .. ..++++. +.+.|+|||.++..+++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 374 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATCS 374 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 999974211 011100 01 1357777 68999999999977654
No 106
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=6.7e-11 Score=99.75 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++...+ ..+++++++|+..-... ..+||.|
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~I 145 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDRI 145 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCEE
Confidence 46689999999999999888875 334579999999999999999987542 35899999999876543 4689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
++....+. .| .. +.+.|++||++++-.+
T Consensus 146 ~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 146 IVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred EEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence 99875432 23 22 3456999999998554
No 107
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.19 E-value=1.4e-10 Score=104.40 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=78.1
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.+|||||||+|.++..+++..+..+++++|+++++++.|+++.+ .++++++.+|+.+. ...++.||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEEE
Confidence 4579999999999999888875444689999999999999998754 24688999998763 223578999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
...-+.... ....+++ +.+.|+|||.+++.
T Consensus 185 ~~~L~~~~d------~~~~L~e-~~rvLkPGG~LvIi 214 (340)
T PLN02490 185 AGSIEYWPD------PQRGIKE-AYRVLKIGGKACLI 214 (340)
T ss_pred cChhhhCCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence 653222111 2357888 79999999998763
No 108
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=2.9e-10 Score=107.06 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++... ...+++++.+|+.+.. ..+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence 3467999999999999998888654 5899999999999999987542 2357999999976532 2346899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+...-.+... ...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence 9643222111 2478888 799999999998764
No 109
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=1.5e-10 Score=98.60 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.+.+|||+|||+|.++..+++. .+..+|++||+|+.+++.|+++. ++++++.+|+..+. ..++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 3679999999999999988764 12358999999999999999763 35889999987643 2468999
Q ss_pred EEEcCCCCCCCCc------ccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 179 Ii~D~~~~~~~~p------~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
||+|||....... ...+....+++. +.+++++|+ +++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~-~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGT-FII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCE-EEe
Confidence 9999984321110 012334567777 566555555 444
No 110
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=6.3e-10 Score=103.73 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=85.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh---cCCCce
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~---~~~~~f 176 (251)
.++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.. ...++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence 356899999999999999888752 33589999999999999999987543 2469999999987642 124689
Q ss_pred eEEEEcCCCCCC----CCccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 177 DVIIGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 177 D~Ii~D~~~~~~----~~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|.|++|+|.... ..|.. .. ...+++.. +.+.|||||.++..+++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 999999974221 01110 00 02567888 68999999999876543
No 111
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=2.7e-10 Score=102.26 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||||||+|..+..+++.. ...|+++|+++.++..++..-.... .+++++++.+|+.+. .. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence 356899999999999999998874 4579999999998865432211111 245899999998765 32 57899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+...-.+...| .++++. +++.|+|||.+++.
T Consensus 195 s~~vl~H~~dp------~~~L~~-l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRRSP------LDHLKQ-LKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccCCH------HHHHHH-HHHhcCCCcEEEEE
Confidence 85432111122 468888 79999999999875
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=4.1e-11 Score=105.84 Aligned_cols=115 Identities=20% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||+|||+|.++..+++. ++.+|+++|+||.+++.|+++...|+ -..++++. ...+. ..++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~--~~~~~---~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS--LSEDL---VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES--CTSCT---CCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE--Eeccc---ccccCCEEE
Confidence 45689999999999999999987 56899999999999999999999885 23466553 11111 238999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
.|... .+ | .+.... +.++|+|||.+++.. +.. +....+.+.+++
T Consensus 231 ANI~~----~v---L--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~ 274 (295)
T PF06325_consen 231 ANILA----DV---L--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQ 274 (295)
T ss_dssp EES-H----HH---H--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHT
T ss_pred ECCCH----HH---H--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHC
Confidence 99752 11 1 355666 688999999999854 222 223456666654
No 113
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.16 E-value=1.3e-10 Score=102.68 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=78.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.++++....+ .++++...|+.... .+++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G-FDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence 35679999999999999999885 3 599999999999999998876432 26888888876542 257899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+...-+.. .+ -....+++. ++++|+|||.+++
T Consensus 190 ~~~vl~~l-~~---~~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFL-NR---ERIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhC-CH---HHHHHHHHH-HHHhcCCCcEEEE
Confidence 88643221 11 112478888 7999999998554
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.16 E-value=3.3e-10 Score=93.87 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=82.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-----Hh--cC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-----l~--~~ 172 (251)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+ . .++++++.+|..+. +. ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 457899999999999998887753 34589999999864 1 14578888887542 11 12
Q ss_pred CCceeEEEEcCCCCCCCCcc-cCCc----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~-~~l~----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (251)
.++||+|++|...+....+. .++. ...+++. +.+.|+|||++++.... ...+..+++.++..|..+.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~~------~~~~~~~l~~l~~~~~~~~ 167 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVFQ------GEEIDEYLNELRKLFEKVK 167 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEcc------CccHHHHHHHHHhhhceEE
Confidence 46899999986422110110 0111 1467888 79999999999986422 2334567777777775443
No 115
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.14 E-value=3.6e-10 Score=96.06 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=81.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++.+||++|||+|..+..+++..+ ..+++++|+++.+++.+++++.... ..++++++.+|+.+.. ...++||+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEEE
Confidence 457999999999999999888643 4799999999999999999875421 2467899999987643 2356899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+...-+.. + ...++++. +.+.|+|||.+++.
T Consensus 127 ~~~~l~~~--~----~~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 127 IAFGLRNV--P----DIDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred EecccccC--C----CHHHHHHH-HHHhccCCcEEEEE
Confidence 86432221 1 13578888 79999999988764
No 116
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.14 E-value=6.5e-10 Score=94.73 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=93.9
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEEEE
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIG 181 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~ 181 (251)
.-+|+||||.|.....+++..+...+.+||+....+..|.+.....+ -+++++++.||.+.+... +++.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 47999999999999999987666799999999999999988776432 238999999999998753 349999999
Q ss_pred cCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+-||||..... ..+...+|++. +.+.|+|||.+-+.+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 99999953322 47889999999 799999999999865
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.14 E-value=4.2e-10 Score=81.53 Aligned_cols=103 Identities=23% Similarity=0.265 Sum_probs=78.9
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~ 184 (251)
+++++|||.|..+..+++. ...+++++|+++..++.+++..... ...+++++.+|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999998883 4579999999999999998532222 2467999999999886433578999999976
Q ss_pred CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 185 ~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.... .-....+++. +.+.|+|+|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 4320 1123577887 68999999998863
No 118
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=2.8e-10 Score=104.36 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=78.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..++++.+ .+|+++|+++++++.|++... ..++++...|..+. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 4567999999999999999988654 589999999999999998753 12488889997653 46899998
Q ss_pred EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+... .+. +. -.-..+++. +.++|||||.+++..
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7643 221 11 112478898 799999999998864
No 119
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.13 E-value=7.6e-10 Score=99.02 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.+|||+|||+|.++..+++. . .+|+++|+++.+++.|+++...++ -++++++.+|+.++.....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~-~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-G-MQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4689999999999999999985 3 699999999999999999987653 257999999999987544457999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
|||.. +- ..+..+. + ..++|++++.+.+++.
T Consensus 247 dPPr~---G~-----~~~~~~~-l-~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 247 NPPRR---GI-----GKELCDY-L-SQMAPRFILYSSCNAQ 277 (315)
T ss_pred CCCCC---Cc-----cHHHHHH-H-HHcCCCeEEEEECCcc
Confidence 98732 11 2344444 3 3478888887766543
No 120
>PRK06922 hypothetical protein; Provisional
Probab=99.12 E-value=3.4e-10 Score=108.47 Aligned_cols=112 Identities=20% Similarity=0.106 Sum_probs=82.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii 180 (251)
++.+|||+|||+|..+..+++..+..+++++|+++.|++.|++..... ..+++++.+|+.+.-. ..+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 468999999999999988887555579999999999999999875432 2478899999877421 2357899999
Q ss_pred EcCCCCCC--CCcc-----cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIE--GGPC-----YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~--~~p~-----~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++..-++. ..|. ..-....+++. +.++|||||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 87643210 0010 00123578888 799999999999864
No 121
>PRK08317 hypothetical protein; Provisional
Probab=99.12 E-value=5e-10 Score=94.91 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=80.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|..+..++++. +..+++++|+++.+++.++++... ..++++++.+|+...- ...++||+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~v 91 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDAV 91 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceEE
Confidence 456899999999999999988764 456999999999999999987322 2367899999976532 234789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++...-..... ...+++. +.++|+|||.+++..
T Consensus 92 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 92 RSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD 124 (241)
T ss_pred EEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence 98754222111 2468888 799999999988654
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=6.6e-10 Score=90.53 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
...+|||||||+|.++.+++++ ..++++||+|+.+++.+++++.. .++++++.+|+.++.. ...+||.|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEEE
Confidence 4578999999999999999987 36899999999999999988742 3589999999988642 2346999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHc-ccCCCCcEEEEecC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQAG 220 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~-~~L~pgG~l~~~~~ 220 (251)
|+|... +.+.+..++. ..+.++|+++++..
T Consensus 84 n~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 84 NLPYNI---------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCCccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 986432 1233444233 23558899998763
No 123
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.12 E-value=5.6e-10 Score=99.63 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++++|||||||+|..+..++... ...|++||+++.++..++..-.... ..+++.+...|..+.- ...+||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp--~~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLH--ELYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCC--CCCCcCEEE
Confidence 456899999999999998888763 4589999999999875432111111 2367888888876542 235899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+...-.+...| .+++++ +++.|+|||.+++..
T Consensus 194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence 87532221122 378888 799999999998753
No 124
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.11 E-value=6.8e-10 Score=93.40 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++.. .++++++.+|+.+.. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEEE
Confidence 35789999999999999988886443 5899999999999999988651 357899999987753 234689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
++....+.... ...+++. +++.|+|||.+++.
T Consensus 111 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRNVTD------IQKALRE-MYRVLKPGGRLVIL 142 (223)
T ss_pred EEeeeeCCccc------HHHHHHH-HHHHcCCCcEEEEE
Confidence 98643222111 2478888 79999999998864
No 125
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.11 E-value=4.5e-10 Score=94.74 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+..+||++|||+|..+..+++.. .+|+++|+++++++.+++++...+ -.+++++.+|+.+.+. ..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEEE
Confidence 356899999999999998777753 489999999999999999886442 2459999999865432 236899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
++...+. +.+. +.+.|+|||++++...
T Consensus 150 ~~~~~~~------------~~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPE------------IPRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchh------------hhHH-HHHhcCCCcEEEEEEc
Confidence 9864221 1234 5678999999988664
No 126
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.11 E-value=1.5e-09 Score=100.98 Aligned_cols=136 Identities=21% Similarity=0.170 Sum_probs=90.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I 179 (251)
.++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ . ..++.+..+|+..... ...++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~-~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--L-TIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--C-CeEEEEeccccccccccccccccCEE
Confidence 34689999999999999998886444699999999999999999987543 1 1234446677654321 124679999
Q ss_pred EEcCCCCCCC----Cccc--CC----------ccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 180 IGDLADPIEG----GPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 180 i~D~~~~~~~----~p~~--~l----------~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
++|+|..... .|.. .. ...+++.. +.+.|||||.++..+++- . ++....+++.+-+.+|
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~---~-~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV---L-PEENSEQIKAFLQEHP 388 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC---C-hhhCHHHHHHHHHhCC
Confidence 9998743210 1210 00 12567887 689999999999876542 2 3333444444444454
Q ss_pred c
Q 025534 244 C 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 389 ~ 389 (426)
T TIGR00563 389 D 389 (426)
T ss_pred C
Confidence 3
No 127
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.09 E-value=1.3e-09 Score=92.84 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCC------cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~ 174 (251)
.+..++||++||+|-++..++++-+. .+|+++||||+|+..+++.... .....++++.++.+||.+. ...+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence 35689999999999999999987544 6899999999999999988632 1122456899999998774 45568
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.||...+.---.. .-.-...+++ +.|+|||||++.+-
T Consensus 177 s~D~yTiafGIRN------~th~~k~l~E-AYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 177 SFDAYTIAFGIRN------VTHIQKALRE-AYRVLKPGGRFSCL 213 (296)
T ss_pred cceeEEEecceec------CCCHHHHHHH-HHHhcCCCcEEEEE
Confidence 8998887532110 1112356788 79999999998753
No 128
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.09 E-value=1.2e-09 Score=99.91 Aligned_cols=103 Identities=10% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.+|||+|||+|.++..++.. . .+|++||+|+.+++.|++++..++ -.+++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 4578999999999999999874 3 689999999999999999987663 248999999999987543356999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
|||.. +. ..++.+. +. .++|++++.+.+.
T Consensus 307 DPPr~---G~-----~~~~l~~-l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 NPPRR---GI-----GKELCDY-LS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC---CC-----cHHHHHH-HH-hcCCCeEEEEEeC
Confidence 98742 21 2466676 44 5899998888664
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=101.37 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~ 178 (251)
+..+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..++ -.+++++.+|+.+++.. .+++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45799999999999999998863 689999999999999999987653 24699999999887642 2357999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|++|+|.. +. .+.++. +.+ ++|++++.+.++|
T Consensus 371 Vi~dPPr~---g~------~~~~~~-l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 371 VLLDPPRA---GA------AEVMQA-LAK-LGPKRIVYVSCNP 402 (443)
T ss_pred EEECcCCc---Ch------HHHHHH-HHh-cCCCeEEEEEeCh
Confidence 99998742 11 245565 444 7999988887654
No 130
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.07 E-value=5.9e-10 Score=94.36 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=75.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--------CCCCCCCeEEEEcchHHHHhcC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~~~~~D~~~~l~~~ 172 (251)
+++.+||++|||.|..+..++++ + .+|++||+++.+++.+.+...... ......+++++++|+.++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 3 589999999999998644221110 0012357999999988763222
Q ss_pred CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
.++||.|+-...-.. ..| -....+++. +.+.|+|||++++
T Consensus 111 ~~~fD~i~D~~~~~~-l~~---~~R~~~~~~-l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 LGPVDAVYDRAALIA-LPE---EMRQRYAAH-LLALLPPGARQLL 150 (213)
T ss_pred CCCcCEEEechhhcc-CCH---HHHHHHHHH-HHHHcCCCCeEEE
Confidence 357999886543211 011 113457888 7999999997443
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.07 E-value=9.9e-10 Score=93.72 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+||+||||+|.++..+.+. . .+++++|+++.+++.+++++.... .+++++..|+.++.....++||+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEEE
Confidence 4678999999999999988885 3 589999999999999998876432 35788899988876445579999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
...-..... ..++++. +.+.|+|||.+++..
T Consensus 121 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 121 MEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred hhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 643222111 2467888 799999999988764
No 132
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=97.45 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=76.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||||||+|.++..+++..+ ..+|++||+++++++.|++++...+ ..+++++.+|+.+.+.. ..+||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence 3557999999999999999888643 2479999999999999999876543 25799999998876543 3579999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++...+ +.... +.+.|+|||++++..
T Consensus 154 i~~~g~~------------~ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD------------EVPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH------------HhHHH-HHHhcCCCCEEEEEe
Confidence 9984321 11223 467899999988753
No 133
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=4.9e-10 Score=92.69 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeE-EEEcchHHHHhcCCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~-~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
..+||++|||+|..-...-.. +..+||++|.++.|-+.+.+.+..+ ..+++. ++++|+++..+-.+.+||.|++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEEE
Confidence 457899999999987775443 4579999999999999999988755 346776 9999999876446789999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
-.--.....| .+.+++ ++++|+|||++++.
T Consensus 152 TlvLCSve~~------~k~L~e-~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 152 TLVLCSVEDP------VKQLNE-VRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEeccCCH------HHHHHH-HHHhcCCCcEEEEE
Confidence 7532111123 467788 79999999988764
No 134
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=2.7e-09 Score=93.46 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=71.7
Q ss_pred CCCeEEEEecCchHHHHHHHhcCC---CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
...+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++.. +++++..+|+.+. ...+++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCceeE
Confidence 457899999999999998876422 137999999999999998752 4688999997763 233578999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++... | .++++ ++++|+|||.+++..
T Consensus 155 I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 155 IIRIYA------P-------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence 997421 2 12456 688999999998765
No 135
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=99.20 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=81.9
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..|+ -.+++++.+|+..++.. .++||+|++||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence 58999999999999998775455689999999999999999998774 24578999999998854 46799999998
Q ss_pred CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|. .+ .+|+.. ..+.++++|++.+-.
T Consensus 134 ~G----s~------~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 134 FG----SP------APFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred CC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence 61 22 367776 467799999998764
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.05 E-value=1.4e-09 Score=92.08 Aligned_cols=105 Identities=19% Similarity=0.172 Sum_probs=80.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.+||++|||+|.++..+++.. .+++++|+++.+++.+++++...+ ..++++..+|+.++....+++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 46799999999999999888753 479999999999999998876432 126899999998876544578999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
...-..... ...+++. +.+.|+|||.+++..
T Consensus 119 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 743221112 2467888 799999999887654
No 137
>PRK05785 hypothetical protein; Provisional
Probab=99.04 E-value=3.8e-09 Score=90.23 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+|||||||+|.++..+.+.. ..+|+++|++++|++.|++. ...+++|+.+. .-.+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~l-p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEAL-PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhhC-CCCCCCEEEEEe
Confidence 46899999999999999998864 25899999999999999863 12467887653 344689999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
...-++... ....+++ ++++|||.+ .++..+.|
T Consensus 117 ~~~l~~~~d------~~~~l~e-~~RvLkp~~-~ile~~~p 149 (226)
T PRK05785 117 SFALHASDN------IEKVIAE-FTRVSRKQV-GFIAMGKP 149 (226)
T ss_pred cChhhccCC------HHHHHHH-HHHHhcCce-EEEEeCCC
Confidence 754322111 2468888 799999943 23344333
No 138
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.04 E-value=1.3e-09 Score=97.04 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+..+|||||||+|.++..++++.+..+++++|+ |.+++.++++....+ ..+|++++.+|+++. .. ..+|+|++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~--~~-~~~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE--SY-PEADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC--CC-CCCCEEEe
Confidence 457999999999999999998755579999998 899999998876432 246899999998752 12 34799876
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.-.-+.. .+ -....+++. +++.|+|||++++.
T Consensus 222 ~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 5432210 11 112467888 79999999999775
No 139
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.7e-09 Score=88.47 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=71.1
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.-.++.|+|+|||+|.++..++-. +..+|++||+||++++.++++.+.. ..+++++++|+.++ ..++|.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceE
Confidence 346778999999999999988776 4579999999999999999997642 35899999998776 4789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHH
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEF 203 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~ 203 (251)
++|||-... ..+ .+.+|++.
T Consensus 113 imNPPFG~~---~rh-aDr~Fl~~ 132 (198)
T COG2263 113 IMNPPFGSQ---RRH-ADRPFLLK 132 (198)
T ss_pred EECCCCccc---ccc-CCHHHHHH
Confidence 999974321 112 35667665
No 140
>PTZ00146 fibrillarin; Provisional
Probab=99.03 E-value=5.6e-09 Score=91.79 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~fD 177 (251)
.+..+|||+|||+|.++..+++.- +...|++||+++++.+...+... ..+++..+.+|++.- .....+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence 455799999999999999999863 23589999999976543333221 125789999998642 121235799
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--C-ChHHHHHHHHHHHhh-CC
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S-HTEVFSCIYNTLRQV-FK 243 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~-~~~~~~~i~~~l~~~-F~ 243 (251)
+|++|...++ . ...+... +++.|||||.+++..-..+.. . ..+.+.+-.+.|++. |.
T Consensus 205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~ 265 (293)
T PTZ00146 205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK 265 (293)
T ss_pred EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence 9999986433 1 1234455 688999999988743211111 1 123455555778876 66
No 141
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.02 E-value=6e-09 Score=97.06 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~ 178 (251)
+..+|||+|||+|.++..+++.. .+|++||+++.+++.|++++..++ ..+++++.+|+.+++.. ...+||+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 45789999999999999998853 589999999999999999987653 35899999999887653 2357999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++|++.. + ...++++. +. .++|++++.+.+
T Consensus 366 vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 366 LLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence 99998742 1 12467776 45 489998776643
No 142
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.02 E-value=1.6e-09 Score=91.10 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+++.+|||+|||+|..+..+.+..+..++++||+|+++++.|++++ ++++++.+|+.+. ..+++||+|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V~ 110 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLVL 110 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEEE
Confidence 5678999999999999999988634468999999999999999863 3577888998762 2457899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~ 210 (251)
+...-... .| . .-.++++. +.++++
T Consensus 111 ~~~vL~hl-~p-~--~~~~~l~e-l~r~~~ 135 (204)
T TIGR03587 111 TKGVLIHI-NP-D--NLPTAYRE-LYRCSN 135 (204)
T ss_pred ECChhhhC-CH-H--HHHHHHHH-HHhhcC
Confidence 87642211 22 1 12467777 677763
No 143
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.01 E-value=1.7e-09 Score=101.80 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=77.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~~~~fD~Ii 180 (251)
+..+|||||||+|.++..++++. .+|++||+++.+++.+++..+ ..++++++.+|+... +...+++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45789999999999999999863 589999999999998776322 136799999998642 222357899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+..+-++. .+ -...++++. +++.|+|||.+++.
T Consensus 109 ~~~~l~~l-~~---~~~~~~l~~-~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYL-SD---KEVENLAER-MVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhC-CH---HHHHHHHHH-HHHhcCCCeEEEEE
Confidence 98653221 10 012578888 69999999999875
No 144
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.00 E-value=3.1e-09 Score=96.98 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=85.1
Q ss_pred CeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
-+|||+.+|+|..+.++++. .++.+|+++|+||..++.+++++..++ ..+++++++|+..++....++||+|++|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 48999999999999999886 356799999999999999999998774 2468999999999997656789999999
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+. .| .+|+.. +.+.++++|++.+-.
T Consensus 122 PfG----s~------~~fld~-al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PFG----TP------APFVDS-AIQASAERGLLLVTA 147 (374)
T ss_pred CCC----Cc------HHHHHH-HHHhcccCCEEEEEe
Confidence 862 22 268888 678899999988763
No 145
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.00 E-value=3.5e-09 Score=89.70 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+..+|||||||+|.++..+++. . .+|+++|+|+++++.|++++.... ...++++.++|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~-~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-G-AIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence 35789999999999999999875 3 589999999999999999876432 124799999997653 27899998
Q ss_pred EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+... .+. .+ . ....+++. +.+.+++++++.+
T Consensus 125 ~~~~l~~~--~~-~--~~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY--PA-S--DMAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC--CH-H--HHHHHHHH-HHHHhCCCEEEEE
Confidence 7432 221 11 0 12356777 6777887666554
No 146
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.99 E-value=4.1e-09 Score=93.75 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=76.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC----c
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S 175 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~----~ 175 (251)
+++.+|||+|||+|..+..+++... ..++++||+|++|++.|++.+... +..-+++.+++|..+.+..... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 4567899999999999999988632 368999999999999999876531 1123467789998765422211 2
Q ss_pred eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
..+++++..-... .+ -....+++. ++++|+|||.+++-.
T Consensus 139 ~~~~~~gs~~~~~-~~---~e~~~~L~~-i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNF-TP---EEAVAFLRR-IRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEec
Confidence 3345444432211 11 113478999 799999999998754
No 147
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.99 E-value=4e-09 Score=94.23 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEE-cchHHHHh---cCCCce
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~-~D~~~~l~---~~~~~f 176 (251)
...++||||||+|.+...++......+++++|+|+.+++.|++++..+ + -..+++++. .|...... ...++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhcccccCCce
Confidence 457999999999988776665433468999999999999999998866 2 235788864 44433332 235789
Q ss_pred eEEEEcCCCC
Q 025534 177 DVIIGDLADP 186 (251)
Q Consensus 177 D~Ii~D~~~~ 186 (251)
|+|++|||..
T Consensus 191 DlivcNPPf~ 200 (321)
T PRK11727 191 DATLCNPPFH 200 (321)
T ss_pred EEEEeCCCCc
Confidence 9999999843
No 148
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.99 E-value=1.5e-09 Score=90.02 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.++||||||.|-.+.+|++. + -.|+++|+|+..++.+++..... .-.++....|..++- .++.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~-G-~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ-G-FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT-T--EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEEE
Confidence 46789999999999999999997 4 58999999999999887765432 234889999976542 347899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+......- .+ -.-+..++. +++.++|||.+++.
T Consensus 100 st~v~~fL-~~---~~~~~i~~~-m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFL-QR---ELRPQIIEN-MKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS--G---GGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred EEEEeccC-CH---HHHHHHHHH-HHhhcCCcEEEEEE
Confidence 86432210 11 122567888 79999999987764
No 149
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=89.56 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=78.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC------------------------------
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------------------------------ 151 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------------------------------ 151 (251)
.++.+|||||-+|.++..++++.+...|.+||||+..|..|+++.+....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 46889999999999999999998888999999999999999998653211
Q ss_pred --------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 152 --------AFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 152 --------~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.+...+..+-..| |+.....+||+|++=+-.-|..---..-=-..||+. +.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~d---fl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDD---FLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecch---hhhhccccccEEEEEEeeeeEecccccHHHHHHHHH-HHHhhCcCcEEEEc
Confidence 0011122223333 333335789999986542221000000012589999 89999999999985
No 150
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.97 E-value=2.2e-09 Score=85.54 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=67.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++..+|||||||.|.++..+.+. + .+++++|+++.+++. .+ +.....+.... ...+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~~-~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK--RN------------VVFDNFDAQDP-PFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH--TT------------SEEEEEECHTH-HCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh--hh------------hhhhhhhhhhh-hccccchhhHh
Confidence 56789999999999999999775 3 399999999999998 11 11111111122 12357999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+...-.+ -+ .-.++++. ++++|||||.+++..
T Consensus 84 ~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 84 CNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9854222 11 13578888 799999999998865
No 151
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.97 E-value=1e-08 Score=93.46 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC----------
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------- 172 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---------- 172 (251)
+.+|||++||+|.++..+++. ..+|++||+++.+++.++++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999988875 3589999999999999999987664 248999999999987531
Q ss_pred -----CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 173 -----~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
..+||+|++|||.. +. ..+.++. +.+ +++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~---G~-----~~~~l~~-l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRA---GL-----DDETLKL-VQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCC---CC-----cHHHHHH-HHc---cCCEEEEEeC
Confidence 12599999999842 21 2455565 443 7888877654
No 152
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.96 E-value=3.1e-09 Score=86.42 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+..||||||||.|.+...|++..-....++||.++.++++|+.-....+ ....+++.+.|...- ....++||+|+-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEee
Confidence 3449999999999999999986322359999999999999886654433 234599999997653 234578888874
Q ss_pred cCC-CCCC---CCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 182 D~~-~~~~---~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
--+ +... ..+..++ .-++.. +.+.|+|||++++-++
T Consensus 143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSC 182 (227)
T ss_pred cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEec
Confidence 322 1110 1222222 123445 7899999999998764
No 153
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.96 E-value=1.3e-08 Score=92.44 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=77.1
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---------C
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K 173 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---------~ 173 (251)
+.+|||+|||+|.++..+++.. .+|++||+++++++.|++++..++ -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999999999888753 589999999999999999988764 247999999999988631 1
Q ss_pred ------CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 174 ------~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
.+||+|++|||. . +. ..++++. +. +|++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~--G~-----~~~~l~~-l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-A--GL-----DPDTCKL-VQ---AYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCC-C--CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence 248999999983 2 21 2355555 43 37888887664
No 154
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=2.7e-09 Score=90.67 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=75.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc--------CCCCCCCeEEEEcchHHHHhcC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~~~~~D~~~~l~~~ 172 (251)
+++.+||++|||.|..+..|+++ + .+|++||+++..++.+.+...... ..+...+++++++|++++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35579999999999999999986 3 589999999999998643211110 0123468999999998874322
Q ss_pred CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
..+||.|+--..-.. -|. -....+++. +.+.|+|||+++
T Consensus 114 ~~~fd~v~D~~~~~~--l~~--~~R~~~~~~-l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALIA--LPE--EMRERYVQQ-LAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHhh--CCH--HHHHHHHHH-HHHHcCCCCeEE
Confidence 357999985432111 111 113567888 799999998533
No 155
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=87.52 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE----EcchHHHHhcCCCc
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES 175 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~----~~D~~~~l~~~~~~ 175 (251)
+.++..+||+|||+|+++..+++.-+...|++||.++.++.+|.++..... ...++.++ ..|...-.....++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence 345668999999999999999886446799999999999999999875432 24578777 44544333233489
Q ss_pred eeEEEEcCCCC-CC-----------CCcccCCc--------cHHHHHHHHcccCCCCcEEEEecC
Q 025534 176 YDVIIGDLADP-IE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 176 fD~Ii~D~~~~-~~-----------~~p~~~l~--------~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|+|++|+|.- .. ..|...|. -..++.. +.|+|+|||.+.++..
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence 99999999821 10 11111111 1245555 5799999999998875
No 156
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.92 E-value=2.3e-08 Score=84.91 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+ ...+++++.+|. .. ..+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-ES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-hh---ccCCcCEEE
Confidence 456799999999999999998863 479999999999999999876432 125899999993 22 246899999
Q ss_pred EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
+... .+. +.. .....++. +.+.+++++++.
T Consensus 133 ~~~~l~~~---~~~--~~~~~l~~-l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHY---PQE--DAARMLAH-LASLTRGSLIFT 163 (230)
T ss_pred EcchhhcC---CHH--HHHHHHHH-HHhhcCCeEEEE
Confidence 8643 222 111 12355666 566665444443
No 157
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.91 E-value=4.2e-09 Score=89.09 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=80.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.-+-++|+|||+|..++-++.++ .+|+++|++++|++.|+++.+... .+-..++...|...++. .+++.|+|++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeeehh
Confidence 33479999999998888888886 589999999999999999876432 33455666667666653 3689999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCc-EEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG-~l~~~~ 219 (251)
.-.-|| +...+||+. ++++||++| +++++.
T Consensus 107 Aqa~HW-------Fdle~fy~~-~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 107 AQAVHW-------FDLERFYKE-AYRVLRKDGGLIAVWN 137 (261)
T ss_pred hhhHHh-------hchHHHHHH-HHHHcCCCCCEEEEEE
Confidence 765555 224689999 899999977 777765
No 158
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=1.8e-08 Score=84.83 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=84.1
Q ss_pred CCCCeEEEEecCchHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025534 101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-----~~~ 174 (251)
-.++++|+||.-+|..+...+. .++..+|+++|+|+...+++.+..+..+ .+.+++++++++.+-+.+ ..+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence 3689999999999998766654 4667899999999999999987766443 467999999999988764 247
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+||++|+|..-. .|. .+++. +-+.||+||++++.
T Consensus 149 tfDfaFvDadK~--------nY~-~y~e~-~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVDADKD--------NYS-NYYER-LLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEccchH--------HHH-HHHHH-HHhhcccccEEEEe
Confidence 899999996421 222 78888 58999999999874
No 159
>PRK06202 hypothetical protein; Provisional
Probab=98.89 E-value=7.9e-09 Score=88.30 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=70.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f 176 (251)
.++.+|||||||+|.++..+++. ....+|+++|+++.+++.|++.... +++++...|+... ...+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence 45679999999999998887753 2235899999999999999987532 3456666654333 2245789
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|+|++...-++...+ ...++++. +.+.++ |.++++
T Consensus 131 D~V~~~~~lhh~~d~----~~~~~l~~-~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHHLDDA----EVVRLLAD-SAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeecCChH----HHHHHHHH-HHHhcC--eeEEEe
Confidence 999998643221111 12468888 688887 444444
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.89 E-value=2.9e-09 Score=89.09 Aligned_cols=100 Identities=25% Similarity=0.401 Sum_probs=74.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+...|||+.||-|.++..++++.....|.++|+||..++..+++..+|+ -..++.++.+|+++++. ...||.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CCCeEEEEcCCHHHhcC--ccccCEEE
Confidence 46789999999999999999986566789999999999999999999885 34689999999999986 67999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
++.|.. +.+|+.. +.+++++||++-
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 997632 2367777 678899998763
No 161
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.89 E-value=3.3e-08 Score=88.36 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=70.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccC-CCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++.+|||||||+|.++..+++. + .+|+++|+++.+++.++++.+.... .....++++...|.... .++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 4679999999999999999986 3 5899999999999999998753210 00124688899996543 47899998
Q ss_pred EcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+... .+. |... ..++++. +. .+.++|+++.
T Consensus 218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIIS 248 (315)
T ss_pred EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEE
Confidence 7532 221 1100 1245665 44 4667776653
No 162
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.86 E-value=9.4e-09 Score=84.73 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
+++.||||||||+|.+...|.+.. ..+..+||+|++-+..|.++ .+.++++|+-+.+.. .+++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 567999999999999999988865 46899999999998888764 578999999998864 56899999
Q ss_pred EEcCC
Q 025534 180 IGDLA 184 (251)
Q Consensus 180 i~D~~ 184 (251)
|+.-+
T Consensus 80 Ilsqt 84 (193)
T PF07021_consen 80 ILSQT 84 (193)
T ss_pred ehHhH
Confidence 99865
No 163
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.85 E-value=6.9e-09 Score=90.63 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=73.7
Q ss_pred CCCeEEEEecCchH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhchh-c-----------------ccCCC-
Q 025534 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-V-----------------NKEAF- 153 (251)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~~-~-----------------~~~~~- 153 (251)
++.+|+++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..- . .++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4444544321 3589999999999999998531 0 00000
Q ss_pred ----CCCCeEEEEcchHHHHhcCCCceeEEEEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 154 ----SDPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 154 ----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-..++++...|+.+.- ...++||+|++-. .... .+ -....+++. +.++|+|||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~~---~~~~~~l~~-l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--DE---PTQRKLLNR-FAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--CH---HHHHHHHHH-HHHHhCCCeEEEEEC
Confidence 0136888999976632 1257899999943 2211 11 112468888 799999999999854
No 164
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.83 E-value=7.1e-08 Score=91.60 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=97.6
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 180 (251)
...-+|+||||.|..+..+++..+...+.+||+....+..+.+..... .-.++.++..|+..+... .+.+.|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 456799999999999988888656678999999999888776654322 235789999997655443 347899999
Q ss_pred EcCCCCCCCCc--ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 181 GDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 181 ~D~~~~~~~~p--~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
+.-||||.... ...+.+.+|++. +++.|+|||.+.+.+. ..+++..++..+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~ 477 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ 477 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence 99999994321 347889999999 8999999999988652 34556566666554
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.78 E-value=2.8e-08 Score=92.73 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=73.3
Q ss_pred CCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.+-|||+|+|+|.++..+++. ....+|.+||.|+.++...++....++ + ..+|+++.+|.+++- .+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence 356999999999998776653 234699999999998887766544332 2 468999999999873 3579999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
||+-..... +- .+ ...|.+.. ..+.|||||+++=
T Consensus 262 IVSElLGsf--g~-nE-l~pE~Lda-~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSF--GD-NE-LSPECLDA-ADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTT--BT-TT-SHHHHHHH-GGGGEEEEEEEES
T ss_pred EEEeccCCc--cc-cc-cCHHHHHH-HHhhcCCCCEEeC
Confidence 999886433 21 22 35678887 6899999999873
No 166
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.77 E-value=9e-08 Score=84.09 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=76.5
Q ss_pred hHHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHH---HhchhcccCCCCCCCeEEEEc
Q 025534 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC---KSYLVVNKEAFSDPRLELVIN 163 (251)
Q Consensus 87 ~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a---~~~~~~~~~~~~~~rv~~~~~ 163 (251)
-+.+..-|++ .-.+++|||||||.|..+..+++. +++.|+++|.++...-.. +++++ .++++. ...
T Consensus 103 KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~-~lp 171 (315)
T PF08003_consen 103 KWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLG------QDPPVF-ELP 171 (315)
T ss_pred hHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhC------CCccEE-EcC
Confidence 4555444442 347899999999999999999986 557899999988765542 22222 122333 333
Q ss_pred chHHHHhcCCCceeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 164 DARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 164 D~~~~l~~~~~~fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+.+.+.. .+.||+|++--- .|. ..| .+.+++ +++.|+|||.+++++
T Consensus 172 lgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 172 LGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLET 219 (315)
T ss_pred cchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEE
Confidence 56666655 578999998642 222 144 267778 799999999999764
No 167
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.76 E-value=3.5e-07 Score=85.90 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=95.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+|||+++|.|+=+.+++..- +...|+++|+++.-++..++++...+ -.++.+...|+..+.....+.||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence 356899999999999888887752 33589999999999999999886432 3578999999987654445789999
Q ss_pred EEcCCCCCC----CCccc-CCc-----------cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 180 IGDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 180 i~D~~~~~~----~~p~~-~l~-----------~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
++|+|.... ..|.. .-+ ..+++.. +.+.|||||+++-.+++ + .++....+++.+-+.++
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT---~-~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT---L-NREENQAVCLWLKETYP 262 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC---C-CHHHHHHHHHHHHHHCC
Confidence 999985432 11210 011 2567777 67999999999755543 3 35556666666655565
Q ss_pred c
Q 025534 244 C 244 (251)
Q Consensus 244 ~ 244 (251)
.
T Consensus 263 ~ 263 (470)
T PRK11933 263 D 263 (470)
T ss_pred C
Confidence 4
No 168
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.75 E-value=2.8e-08 Score=80.38 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=56.3
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEEEc
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD 182 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~-~fD~Ii~D 182 (251)
.|+|+.||.|+.+.++++.. .+|++||+||.-++.|+.+...-+ ...+++++++|.++.++... . .||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999974 589999999999999999987543 35689999999999886532 2 28999999
Q ss_pred CC
Q 025534 183 LA 184 (251)
Q Consensus 183 ~~ 184 (251)
||
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 86
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.75 E-value=1.1e-07 Score=84.40 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=63.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+..+|||||||.|.++..+++.. .+|+++|+|+.+++.+++++...+ ..++++++.+|+.+.- -..||.|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence 345789999999999999998863 589999999999999999876432 2468999999987752 24799999
Q ss_pred EcCCCC
Q 025534 181 GDLADP 186 (251)
Q Consensus 181 ~D~~~~ 186 (251)
.|+|..
T Consensus 107 aNlPY~ 112 (294)
T PTZ00338 107 ANVPYQ 112 (294)
T ss_pred ecCCcc
Confidence 998743
No 170
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.7e-07 Score=76.29 Aligned_cols=126 Identities=22% Similarity=0.239 Sum_probs=90.9
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++=+|+||||+|.++..+.+. .+.....+.||||.+.+..++-...|+ -+++.++.|...-++. ++.|+++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-----~~~~~V~tdl~~~l~~--~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-----VHIDVVRTDLLSGLRN--ESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-----CccceeehhHHhhhcc--CCccEEE
Confidence 4677999999999999888774 344678899999999999888776653 5689999999998875 8999999
Q ss_pred EcCCC-CCCCCcc--------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 181 GDLAD-PIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 181 ~D~~~-~~~~~p~--------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
.+++. |....+. ..-.+..++.+ +...|+|.|++.+..... ..-+++++.|++.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~~------N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALRA------NKPKEILKILEKK 184 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehhh------cCHHHHHHHHhhc
Confidence 99872 3221111 11113456777 689999999998876332 1224556655543
No 171
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.70 E-value=5.3e-08 Score=81.00 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I 179 (251)
+++.+|||||||+|.++..+++..+ ..++++|+++++++.+++. +++++.+|+.+.+. ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEE
Confidence 3567999999999999988876543 5789999999999988742 46788899876443 235789999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP 211 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p 211 (251)
++...-++... ...++++ +.+.+++
T Consensus 80 i~~~~l~~~~d------~~~~l~e-~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRN------PEEILDE-MLRVGRH 104 (194)
T ss_pred EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence 99864322111 2356666 5665553
No 172
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.69 E-value=4.5e-09 Score=88.36 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=74.7
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii~ 181 (251)
-+++||||||||..+-.+... +.++++||||..|++.|.+.=. -=++.++|+..|++ .++++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 479999999999999887664 4689999999999999987521 12577889988997 45689999986
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
----+.. + .| ..+|.. +...|+|||.|++.+.
T Consensus 195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE 226 (287)
T COG4976 195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE 226 (287)
T ss_pred hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence 4211111 1 11 345666 6899999999988664
No 173
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.68 E-value=7.5e-08 Score=80.62 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+.=+||||||+|..+..+... + -..++|||+|.|++.|.+. ... -.++.+|.-+-+...+++||-+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence 667999999999999887764 3 4799999999999999862 111 2577788777777778999988876
Q ss_pred CCCCCC-------CCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 183 LADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 183 ~~~~~~-------~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
..-.|. ..|... ...||.. +..+|++|+..++|..+
T Consensus 120 SAvQWLcnA~~s~~~P~~R--l~~FF~t-Ly~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKR--LLRFFGT-LYSCLKRGARAVLQFYP 162 (270)
T ss_pred eeeeeecccCccccChHHH--HHHHhhh-hhhhhccCceeEEEecc
Confidence 553332 122212 2468998 79999999999999854
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.67 E-value=7.5e-08 Score=83.83 Aligned_cols=74 Identities=18% Similarity=0.361 Sum_probs=61.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+..+|||||||+|.++..+++.. .+|++||+|+.+++.+++++.. .++++++++|+.++- -..||.|++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEEE
Confidence 46789999999999999999873 5899999999999999987642 368999999987642 245899999
Q ss_pred cCCCC
Q 025534 182 DLADP 186 (251)
Q Consensus 182 D~~~~ 186 (251)
++|..
T Consensus 98 NlPy~ 102 (258)
T PRK14896 98 NLPYQ 102 (258)
T ss_pred cCCcc
Confidence 98743
No 175
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.67 E-value=1.5e-07 Score=80.16 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=77.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc--------cCCCCCCCeEEEEcchHHHHh--
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE-- 170 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--------~~~~~~~rv~~~~~D~~~~l~-- 170 (251)
+++.|||+.|||.|.-+.+|+.+ + -+|++||+++..++.+.+..... ...+...+++++++|.+++-.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999997 3 47999999999999986632110 001234589999999988621
Q ss_pred cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
...++||+|+--.+-... .| -....+.+. +.+.|+|||.+++
T Consensus 120 ~~~~~fD~VyDra~~~Al-pp---~~R~~Y~~~-l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIAL-PN---DLRTNYAKM-MLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhcC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence 122589998865442210 12 124567777 7999999997764
No 176
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.65 E-value=5.4e-08 Score=82.68 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=75.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHh-chhccc-------CCCCCCCeEEEEcchHHHHhcC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELESR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~~~~~~-------~~~~~~rv~~~~~D~~~~l~~~ 172 (251)
+.+.+||+.|||.|.-+..|+++ + -+|++||+++.+++.+.+ +..... ......+++++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 45679999999999999999997 4 589999999999999843 321110 0123568999999998864333
Q ss_pred CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE
Q 025534 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~ 214 (251)
.++||+|+=-.+-.. -| .-...++.+. ++++|+|||.
T Consensus 114 ~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred cCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence 358999996654322 22 1234567777 8999999998
No 177
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.64 E-value=1e-07 Score=80.11 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
...++||+|+|-|-++..++.. -..+|+.||..+..++.|++++... .....++++.-..+|... ..+||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P~-~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTPE-EGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccCC-CCcEeEEEe
Confidence 4578999999999999988764 2579999999999999999987642 123356777777777543 468999999
Q ss_pred cCCCCCCCCcccCCcc---HHHHHHHHcccCCCCcEEEEe
Q 025534 182 DLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~---~ef~~~~~~~~L~pgG~l~~~ 218 (251)
...- .+|.. .+|++. +++.|+|+|++++.
T Consensus 129 QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK 160 (218)
T ss_dssp ES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred hHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence 8541 34544 468999 59999999999984
No 178
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=4.6e-07 Score=81.36 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=88.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.+|+ -..++..+++|++++.... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc-ccCCEEE
Confidence 4589999999999999999999754 459999999999999999999986 3456999999999998654 7899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
+..+.. +.+|+.. ..+.++++|++-.....|
T Consensus 262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccc
Confidence 997631 3466776 678899999998876544
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.63 E-value=8.1e-08 Score=82.47 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
...++|+|||+|.|.++..+++..+..+++..|+ |++++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 3457899999999999999998766679999999 999999988 269999999976 33445 99999
Q ss_pred EcCC-CCCCCCcccCCccHHHHHHHHcccCCCC--cEEEEec
Q 025534 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA 219 (251)
Q Consensus 181 ~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pg--G~l~~~~ 219 (251)
+--. +.| .+ -.....++. +++.|+|| |+|++..
T Consensus 164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence 8654 223 11 113467888 69999998 9887754
No 180
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.9e-07 Score=84.71 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=86.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~I 179 (251)
...+|||+=||.|.++..+++. ..+|++||+++++++.|+++...|+ ..+++++.+|+.++.... ...+|.|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 3468999999999999999974 4799999999999999999998875 345999999999998764 3689999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
++|||-.. - .+++.+. + ..++|..++.+.+++.
T Consensus 367 vvDPPR~G---~-----~~~~lk~-l-~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 367 VVDPPRAG---A-----DREVLKQ-L-AKLKPKRIVYVSCNPA 399 (432)
T ss_pred EECCCCCC---C-----CHHHHHH-H-HhcCCCcEEEEeCCHH
Confidence 99998532 1 3577787 3 5789999998877543
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.60 E-value=1.2e-07 Score=83.13 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.+|||||||+|.++..++++. .+|+++|+|+++++.+++.+. .++++++++|+.++-. .+-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~-~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDL-SELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCH-HHcCcceEE
Confidence 356789999999999999999874 389999999999999998653 2689999999887521 111159999
Q ss_pred EcCCC
Q 025534 181 GDLAD 185 (251)
Q Consensus 181 ~D~~~ 185 (251)
.++|.
T Consensus 111 ~NlPY 115 (272)
T PRK00274 111 ANLPY 115 (272)
T ss_pred EeCCc
Confidence 99863
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.59 E-value=5.4e-07 Score=72.48 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hc-CCCce
Q 025534 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ES-RKESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~-~~~~f 176 (251)
.+..||++|.|+|.+++.++++. ....++++|.|++.+....+.+ |.++++.+|+++.= .. .+..|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCCee
Confidence 45689999999999999999973 2368999999999999888865 45679999988642 22 35789
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
|.||+..|--. -|. -.+.+.++. +..+|..||.++.-...|
T Consensus 119 D~viS~lPll~--~P~--~~~iaile~-~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 119 DSVISGLPLLN--FPM--HRRIAILES-LLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeEEecccccc--CcH--HHHHHHHHH-HHHhcCCCCeEEEEEecC
Confidence 99999886322 221 224578888 789999999888655333
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-07 Score=77.75 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcc------cCCCCCCCeEEEEcchHHHHhcC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRLELVINDARAELESR 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~~rv~~~~~D~~~~l~~~ 172 (251)
.++.+.|++|.|+|.++..+.+. .+.....+||.-|++++.+++++... ..-+..+++.++.+|++..-. .
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~-e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA-E 159 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-c
Confidence 35689999999999988776653 22234599999999999999987532 223567899999999987643 4
Q ss_pred CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
..+||.|.+-+..+. .| +. +-..|++||.+++-.+
T Consensus 160 ~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence 579999999865433 22 34 5677999998887543
No 184
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.57 E-value=3.3e-07 Score=75.51 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcE---------EEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~ 171 (251)
.+...|||--||+|+++.+.+....... +.++|+|+++++.|++++...+ ....+.+...|+.++- .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~ 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence 3457899999999999988876422223 8899999999999999987443 2356899999998864 3
Q ss_pred CCCceeEEEEcCCCCCCCCc---ccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 172 ~~~~fD~Ii~D~~~~~~~~p---~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
..+.+|+|++|+|.....+. ...| -.+|++. ++++|++..++++
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~l-y~~~~~~-~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKL-YRQFLRE-LKRVLKPRAVFLT 149 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHH-HHHHHHH-HHCHSTTCEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHH-HHHHHHH-HHHHCCCCEEEEE
Confidence 45789999999985432111 1122 2457777 6899999545554
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5e-07 Score=78.22 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC--ceeEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDVII 180 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~--~fD~Ii 180 (251)
...||+||.|.|+++..|++.. .+|++||+|+.+++..++.+.. .++++++++|+..+= .++ .++.|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d--~~~l~~~~~vV 100 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFD--FPSLAQPYKVV 100 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCc--chhhcCCCEEE
Confidence 5789999999999999999974 5899999999999999988752 368999999988752 223 789999
Q ss_pred EcCCCC
Q 025534 181 GDLADP 186 (251)
Q Consensus 181 ~D~~~~ 186 (251)
.|.|..
T Consensus 101 aNlPY~ 106 (259)
T COG0030 101 ANLPYN 106 (259)
T ss_pred EcCCCc
Confidence 998754
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.54 E-value=5.2e-07 Score=80.71 Aligned_cols=121 Identities=23% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHHHHHhHhhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chH
Q 025534 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR 166 (251)
Q Consensus 88 y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~ 166 (251)
+.+.|+.++. ..++..|||--||||+++.++.-. + .++.+.|+|.+|++-|+.|+..-+ -+...++.. |+.
T Consensus 185 lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~ 256 (347)
T COG1041 185 LARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccc
Confidence 4455554332 345679999999999999998765 4 699999999999999999987542 245656666 876
Q ss_pred HHHhcCCCceeEEEEcCCCCCCC-Ccc---cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 167 AELESRKESYDVIIGDLADPIEG-GPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 167 ~~l~~~~~~fD~Ii~D~~~~~~~-~p~---~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+ ++-.+.++|.|++|||..... ... ..| ..++++. ..++|++||.+++..
T Consensus 257 ~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~-~~evLk~gG~~vf~~ 310 (347)
T COG1041 257 N-LPLRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALES-ASEVLKPGGRIVFAA 310 (347)
T ss_pred c-CCCCCCccceEEecCCCCcccccccccHHHH-HHHHHHH-HHHHhhcCcEEEEec
Confidence 5 333334699999999854321 111 122 3578888 799999999998865
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.54 E-value=6e-07 Score=77.85 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=60.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee---
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD--- 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD--- 177 (251)
.++.+|||||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.++-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 356799999999999999999875 4699999999999999987642 3689999999876421 2466
Q ss_pred EEEEcCCC
Q 025534 178 VIIGDLAD 185 (251)
Q Consensus 178 ~Ii~D~~~ 185 (251)
+|+.+++.
T Consensus 97 ~vvsNlPy 104 (253)
T TIGR00755 97 KVVSNLPY 104 (253)
T ss_pred eEEEcCCh
Confidence 89988763
No 188
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.52 E-value=3e-07 Score=75.31 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=65.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH--h-cCCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--~-~~~~~fD 177 (251)
.++++||+||||+|..+..+++..+..+|++-|.++ +++.++++...|.. ...+++++..-|-.+.+ . ....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 467899999999999999888874457999999999 99999999887642 12456777665432211 1 1246899
Q ss_pred EEEEc-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+.. ... .+ -....+++. +++.|+++|.+++-
T Consensus 122 ~IlasDv~Y----~~---~~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILASDVLY----DE---ELFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEEES--S-----G---GGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred EEEEecccc----hH---HHHHHHHHH-HHHHhCCCCEEEEE
Confidence 99964 321 11 123567777 79999999975543
No 189
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.45 E-value=1.6e-06 Score=74.73 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
...++||||.|+|.++..++.+. .+|.+-|+++.|....++. ..+++..| ++ .+.+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w-~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DW-QQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hh-hccCCceEEEee
Confidence 45789999999999999998865 5899999999998766653 34444333 33 344678999987
Q ss_pred -cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 182 -D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
|..|... .| ...++. +++.|+|+|++++
T Consensus 158 LNvLDRc~-~P------~~LL~~-i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDRCD-RP------LTLLRD-IRRALKPNGRLIL 186 (265)
T ss_pred hhhhhccC-CH------HHHHHH-HHHHhCCCCEEEE
Confidence 3444332 34 367788 7999999998875
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.44 E-value=4.5e-07 Score=80.82 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+.+.|||+|||+|.++...++. ++.+|.+||.+..+ +.|++-+..|+ -...++++.+.+.+.. -+.++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi~-LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDIE-LPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEEe-cCccceeEEee
Confidence 5789999999999999999997 46899999997655 89998877664 3457899999887762 23489999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHH---cccCCCCcEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVV---KPRLNPEGIFV 216 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~---~~~L~pgG~l~ 216 (251)
..-.. .|+-...+..++ -+.|+|||.+.
T Consensus 134 EWMGy-------~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGY-------FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhH-------HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 85321 122222222211 37899999886
No 191
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.2e-06 Score=73.94 Aligned_cols=124 Identities=19% Similarity=0.155 Sum_probs=93.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~~~fD 177 (251)
.++..||+-|.|+|++++.+++. .+-.++...|....-.+.|++.|...+ -..++++++.|... |.. ...++|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks~~aD 179 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KSLKAD 179 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-cccccc
Confidence 45689999999999999999985 345799999999999999999998654 35689998888654 222 246899
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh-CCce
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCG 245 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v 245 (251)
.|++|.+.||...|. +.++|+.+|.-+++. +|| .+..++..+.|++. |-..
T Consensus 180 aVFLDlPaPw~AiPh------------a~~~lk~~g~r~csF-SPC----IEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 180 AVFLDLPAPWEAIPH------------AAKILKDEGGRLCSF-SPC----IEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred eEEEcCCChhhhhhh------------hHHHhhhcCceEEec-cHH----HHHHHHHHHHHHhCCCceE
Confidence 999999999965552 345888888655554 344 46667777777763 4433
No 192
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.40 E-value=6.9e-07 Score=81.20 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---------
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--------- 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--------- 171 (251)
+.+.+|||+-||.|.++..+++.. .+|++||+++.+++.|+++...++ -.+++++.+++.++...
T Consensus 195 ~~~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 195 LSKGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp T-TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred cCCCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence 334589999999999999998863 699999999999999999998874 46899999887665321
Q ss_pred ------CCCceeEEEEcCCC
Q 025534 172 ------RKESYDVIIGDLAD 185 (251)
Q Consensus 172 ------~~~~fD~Ii~D~~~ 185 (251)
...++|+|++|||-
T Consensus 269 ~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp GGGS-GGCTTESEEEE---T
T ss_pred hhhhhhhhcCCCEEEEcCCC
Confidence 12369999999984
No 193
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.38 E-value=3.4e-06 Score=70.53 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
.++.|||.+|.|-|.+...+-+.++ .+-+.+|..|.|.+..|++-.. +..+|.++.+--.+.+.+ .++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 5789999999999999998888765 5778899999999999987442 346777777665555544 24679999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+-|.+.+. .-.+.+|++. +-+.|||+|++..-
T Consensus 174 ~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhH------HHHHHHHHHH-HhhhcCCCceEEEe
Confidence 99988432 1124689998 79999999999753
No 194
>PRK10742 putative methyltransferase; Provisional
Probab=98.37 E-value=5.7e-06 Score=71.14 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=66.8
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc--cCCCC---CCCeEEEEcchHHHHhcCCCceeEE
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAFS---DPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~~---~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
+|||+-+|.|..+.+++.. + ++|++||-+|.+..+.++.+... ..... ..|++++++|+.+|+....+.||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999987 4 46999999999999999887531 11111 1579999999999998766789999
Q ss_pred EEcCCCCC
Q 025534 180 IGDLADPI 187 (251)
Q Consensus 180 i~D~~~~~ 187 (251)
++||+.|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99998654
No 195
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=6.8e-07 Score=75.43 Aligned_cols=99 Identities=26% Similarity=0.440 Sum_probs=79.0
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe--EEEEcchHHHHhcCCCceeEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDVII 180 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv--~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
-..+++|||+-|.+.+.+... ++.+++.+|.+..|++.|+.- ++|.+ ....+| .+++....+++|+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDLII 142 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhhhh
Confidence 457999999999999999886 588999999999999999874 34554 456677 677776678999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+....+|... | +..+.+ ++..|||+|.++..
T Consensus 143 sSlslHW~Nd----L--Pg~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 143 SSLSLHWTND----L--PGSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhcc----C--chHHHH-HHHhcCCCccchhH
Confidence 9988777421 2 356677 59999999999854
No 196
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.33 E-value=4.4e-07 Score=67.89 Aligned_cols=97 Identities=22% Similarity=0.147 Sum_probs=45.2
Q ss_pred EEEecCchHHHHHHHhcC-CC--cEEEEEECChH---HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-CceeEE
Q 025534 107 FIMGGGEGSTAREILRHK-TV--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~-~~--~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~~fD~I 179 (251)
|+||+..|..+..+++.. .. .++++||..+. .-+..++ .. ...+++++.+|..+.+.... ++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 689999999888777642 22 37999999995 3333333 11 23579999999999887654 899999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
++|..+.. -.....++. +.++|+|||++++.
T Consensus 74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence 99975321 123456777 68999999999874
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.31 E-value=3.6e-06 Score=74.57 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=63.5
Q ss_pred CCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC---cee
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~---~fD 177 (251)
++..++|++||.|+-+..+++..+ ..+|+++|.||++++.|++.+.. ..+++++++|..++.....+ ++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 346899999999999999998743 46999999999999999987532 25899999999988643322 799
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
.|++|+-
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9999973
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.27 E-value=6.6e-06 Score=81.21 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCCeEEEEecCchHHHHHHHhc-----C-------------------------------------CCcEEEEEECChHHH
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-----K-------------------------------------TVEKVVMCDIDEEVV 139 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-----~-------------------------------------~~~~v~~VEid~~vi 139 (251)
....++|.+||+|+++.+++.. + ...+++++|+|++++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3578999999999999887642 0 013699999999999
Q ss_pred HHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC---CCCcEE
Q 025534 140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL---NPEGIF 215 (251)
Q Consensus 140 ~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L---~pgG~l 215 (251)
+.|++++...+ ...++++..+|+.+..... .++||+|++|||.....+. .-...++|+. +-+.| .+|+.+
T Consensus 270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~--~~~l~~lY~~-lg~~lk~~~~g~~~ 343 (702)
T PRK11783 270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE--EPALIALYSQ-LGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--hHHHHHHHHH-HHHHHHHhCCCCeE
Confidence 99999987654 2457999999998864221 2579999999985332111 1112344444 33333 378777
Q ss_pred EEec
Q 025534 216 VTQA 219 (251)
Q Consensus 216 ~~~~ 219 (251)
++-+
T Consensus 344 ~llt 347 (702)
T PRK11783 344 ALFS 347 (702)
T ss_pred EEEe
Confidence 6654
No 199
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.26 E-value=1.2e-06 Score=78.80 Aligned_cols=113 Identities=23% Similarity=0.275 Sum_probs=70.3
Q ss_pred CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCC-----CCCeEEEEcchHHH-Hhc--
Q 025534 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARAE-LES-- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-----~~rv~~~~~D~~~~-l~~-- 171 (251)
++.+|||||||-|+ +.++... ++..++++||+++.|+.|++... +...... .=...++.+|...- +..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56899999999776 5555443 46899999999999999998762 1111000 11356788887532 221
Q ss_pred --CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 172 --RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 172 --~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
...+||+|-+-..-|..... .-..+.+++. +..+|+|||.++.-+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fes--e~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFES--EEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 12599999998654331111 1123568898 799999999998654
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.26 E-value=5.8e-06 Score=73.39 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=76.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
..+-|||+|||+|.++..++.. ++++|.+||.+ +|.+.||+...-|. ...|+.++.|-..+. ..+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEdi--eLPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIEDI--ELPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCccccc--cCchhccEEEe
Confidence 3577999999999999988875 67899999996 47788888776442 457999999987664 34689999999
Q ss_pred cCCCCCCCCcccCCccH---HHHHHHHcccCCCCcEEEEe
Q 025534 182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~---ef~~~~~~~~L~pgG~l~~~ 218 (251)
.+-. .-|+.+ |-|-. .++.|+|.|.+.--
T Consensus 250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 8642 123333 44555 58999999988643
No 201
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.25 E-value=2.2e-06 Score=69.19 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=57.8
Q ss_pred EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC
Q 025534 130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (251)
Q Consensus 130 ~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L 209 (251)
+++|+++.|++.|++........ ..++++++++|+.+. ...+++||+|++...-++.. ...+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~------d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV------DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC------CHHHHHHH-HHHHc
Confidence 58999999999998765422100 125799999998774 44457899999864332211 13578899 79999
Q ss_pred CCCcEEEEec
Q 025534 210 NPEGIFVTQA 219 (251)
Q Consensus 210 ~pgG~l~~~~ 219 (251)
||||.+++..
T Consensus 72 kpGG~l~i~d 81 (160)
T PLN02232 72 KPGSRVSILD 81 (160)
T ss_pred CcCeEEEEEE
Confidence 9999987653
No 202
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.25 E-value=4e-06 Score=72.42 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=62.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.-||++|.|+|.++..++... ++|+++|+||.|+....+.+.-.. ...+++++++|. +...-..||.+|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence 345679999999999999999863 699999999999999888775322 247899999995 433347899999
Q ss_pred EcCCCC
Q 025534 181 GDLADP 186 (251)
Q Consensus 181 ~D~~~~ 186 (251)
.+.|..
T Consensus 129 sNlPyq 134 (315)
T KOG0820|consen 129 SNLPYQ 134 (315)
T ss_pred ccCCcc
Confidence 998743
No 203
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.23 E-value=6.8e-06 Score=80.67 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCeEEEEecCchHHHHHHHhc--------CC----CcEEEEEECChH---HHHHHHhchhc----------------cc-
Q 025534 103 PKTIFIMGGGEGSTAREILRH--------KT----VEKVVMCDIDEE---VVEFCKSYLVV----------------NK- 150 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~--------~~----~~~v~~VEid~~---vi~~a~~~~~~----------------~~- 150 (251)
.-+|||+|.|+|.....+++. ++ .-+++.+|..|- -+..+-+.++. .+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 368999999999855444321 11 237899998652 22222111110 00
Q ss_pred --CCCCCC--CeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 151 --EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 151 --~~~~~~--rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-.+.+. +++++.+|+++.+.+...++|+|++|.|.|.. +| .+++.++|+. ++++++|||++++.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence 011223 45688999999998766779999999998863 44 6999999999 899999999999764
No 204
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.22 E-value=1.9e-06 Score=76.75 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=71.7
Q ss_pred CCCeEEEEecCchHHHHHHHhc-------CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-C
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K 173 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~ 173 (251)
+..+|||..||+|+++.++.++ ....++.++|+|+.++.+|+-++.+.+. ......+..+|.+..-... .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccccccccccc
Confidence 4567999999999998887762 1346899999999999999987654321 1234568899975443222 4
Q ss_pred CceeEEEEcCCCCCC--CCc---ccC----------CccHHHHHHHHcccCCCCcEEEEec
Q 025534 174 ESYDVIIGDLADPIE--GGP---CYK----------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~--~~p---~~~----------l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++||+|+++||-... ..+ ... -....|++. +.+.|++||++++-.
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEEe
Confidence 689999999983211 000 000 011247788 688999999876543
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.1e-06 Score=67.54 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
..++++++||||.|.+...... ++...|.++||||+.++.++++..... -++.+.+.|..+.... .+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhcc-CCeEeeEE
Confidence 4678999999999999965544 566899999999999999999865321 2457777776554332 48999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHH
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEF 203 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~ 203 (251)
.|++.... ..-.+-+|.+.
T Consensus 120 iNppFGTk----~~~aDm~fv~~ 138 (185)
T KOG3420|consen 120 INPPFGTK----KKGADMEFVSA 138 (185)
T ss_pred ecCCCCcc----cccccHHHHHH
Confidence 99875331 11234566665
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4.6e-05 Score=69.40 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=93.5
Q ss_pred hcCC-CCCeEEEEecCchHHHHHHHhcCC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-
Q 025534 98 LHHP-NPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK- 173 (251)
Q Consensus 98 ~~~~-~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~- 173 (251)
.+.+ ++.+|||++.+.|+=+.+++.... ...|+++|+++.=++..++++.-.+ -.++.++..|++.+.....
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccc
Confidence 3444 458999999999998777777533 2457999999999999999876442 2458899999887654432
Q ss_pred -CceeEEEEcCCCCCC----CCccc------------CCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHH
Q 025534 174 -ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (251)
Q Consensus 174 -~~fD~Ii~D~~~~~~----~~p~~------------~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~ 236 (251)
++||.|++|+|.... ..|.. .-+..+++.. +.+.|||||+|+.-+++. .++....+.+
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~vV~ 301 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEVVE 301 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHHHH
Confidence 369999999984322 11210 0113567777 689999999999766543 2444455555
Q ss_pred HHHhhCCc
Q 025534 237 TLRQVFKC 244 (251)
Q Consensus 237 ~l~~~F~~ 244 (251)
.+-+..+.
T Consensus 302 ~~L~~~~~ 309 (355)
T COG0144 302 RFLERHPD 309 (355)
T ss_pred HHHHhCCC
Confidence 54444433
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.19 E-value=5.8e-06 Score=79.01 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCC--------CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH----
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---- 169 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---- 169 (251)
...+|||.|||+|.+...++++.. ...++++|+|+.+++.++..+...+ ...+++..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 346899999999999887765321 1478999999999999998875432 123566666644321
Q ss_pred hcCCCceeEEEEcCCC
Q 025534 170 ESRKESYDVIIGDLAD 185 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~~ 185 (251)
....++||+||.|||-
T Consensus 107 ~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 107 ESYLDLFDIVITNPPY 122 (524)
T ss_pred ccccCcccEEEeCCCc
Confidence 1123589999999983
No 208
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.18 E-value=4.6e-05 Score=63.06 Aligned_cols=113 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+++|||+|+|. +...++. +..+++.||.+..=+...+.-....+ -++++++++.+.+ .....+||+|++
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRELG----LSNVEVINGRAEE--PEYRESFDVVTA 121 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--TTTTT-EEEEEE
T ss_pred ceEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHhC----CCCEEEEEeeecc--cccCCCccEEEe
Confidence 389999999996 4444444 44689999999998888776654332 3579999999988 345689999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~ 239 (251)
=+..+. ..+++. +...|++||.++..-++. ..+.+....+.+.
T Consensus 122 RAv~~l----------~~l~~~-~~~~l~~~G~~l~~KG~~----~~~El~~~~~~~~ 164 (184)
T PF02527_consen 122 RAVAPL----------DKLLEL-ARPLLKPGGRLLAYKGPD----AEEELEEAKKAWK 164 (184)
T ss_dssp ESSSSH----------HHHHHH-HGGGEEEEEEEEEEESS------HHHHHTHHHHHH
T ss_pred ehhcCH----------HHHHHH-HHHhcCCCCEEEEEcCCC----hHHHHHHHHhHHH
Confidence 876432 366777 689999999999876642 2344444444444
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.17 E-value=4e-06 Score=68.79 Aligned_cols=124 Identities=18% Similarity=0.273 Sum_probs=68.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-----HHHHhc----
Q 025534 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES---- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-----~~~l~~---- 171 (251)
.+.+||||||+.|+.+..++++. ...+|.+||+.+. . ..+.+..+.+|. .+.+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~---------~~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D---------PLQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G---------S-TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c---------cccceeeeecccchhhHHHhhhhhccc
Confidence 56899999999999999999875 3579999999987 1 012333333332 222222
Q ss_pred CCCceeEEEEcCCCCCCCCcc-cCCc----cHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCcee
Q 025534 172 RKESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGY 246 (251)
Q Consensus 172 ~~~~fD~Ii~D~~~~~~~~p~-~~l~----~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (251)
..+++|+|++|........+. .+.. ....+.. +.+.|+|||.+++..-. .... ..++..++..|..+.
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~-a~~~L~~gG~~v~K~~~-----~~~~-~~~~~~l~~~F~~v~ 160 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLL-ALELLKPGGTFVIKVFK-----GPEI-EELIYLLKRCFSKVK 160 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHH-HHHHHCTTEEEEEEESS-----STTS-HHHHHHHHHHHHHEE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHH-HHhhhcCCCEEEEEecc-----CccH-HHHHHHHHhCCeEEE
Confidence 236899999998422211110 0000 1122223 35789999988886522 1122 255555666665554
Q ss_pred e
Q 025534 247 N 247 (251)
Q Consensus 247 ~ 247 (251)
.
T Consensus 161 ~ 161 (181)
T PF01728_consen 161 I 161 (181)
T ss_dssp E
T ss_pred E
Confidence 3
No 210
>PRK04148 hypothetical protein; Provisional
Probab=98.12 E-value=6.9e-06 Score=64.29 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++.+||+||||.|. ++..|.+. + .+|+++|+|+..++.+++. .++++.+|.++-=...-+.+|+|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G-~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-G-FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEEE
Confidence 45789999999996 77777765 4 5999999999999988864 367888887653212236799999
Q ss_pred EcCC
Q 025534 181 GDLA 184 (251)
Q Consensus 181 ~D~~ 184 (251)
+--+
T Consensus 83 sirp 86 (134)
T PRK04148 83 SIRP 86 (134)
T ss_pred EeCC
Confidence 8643
No 211
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.08 E-value=1.3e-05 Score=73.48 Aligned_cols=104 Identities=29% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+-+|||.=+|+|.=+...++. .+..+|++-|+|++.+++.++++.+|+. .+.++++.+.|+...+....+.||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999976555554 6678999999999999999999988752 2238999999999988655689999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
||+. .| ..|+.. +.+.++.||+|.+-.
T Consensus 128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence 9984 33 268888 678999999998754
No 212
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.05 E-value=1e-05 Score=62.66 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 156 ~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-+++++.+|+++.+++...++|+|+.|.|.|.. +| .+++.++++. +.++++|||++++.+
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES-
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEee
Confidence 356889999999998877899999999998763 44 6999999999 899999999999864
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.03 E-value=5.9e-06 Score=67.82 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=75.9
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
..+.|+|.|+|.++..+++. +.+|.++|.||...++|++++..++ +.+++++.+|++.|= -+.-|+|+|..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~---fe~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYD---FENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEeccccccc---ccccceeHHHH
Confidence 56899999999999887775 4799999999999999999987664 578999999999872 16789999876
Q ss_pred CCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 184 ADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 184 ~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
.|.... .+ ....+.. +.+-|+.++.++-
T Consensus 105 lDTaLi~E~-----qVpV~n~-vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEK-----QVPVINA-VLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhccc-----ccHHHHH-HHHHhhcCCcccc
Confidence 542210 11 1245566 4567888888874
No 214
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.03 E-value=1.1e-05 Score=70.46 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=61.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD~I 179 (251)
+...|||||.|.|.++..++++. .++++||+|+..++..++.+. .+++++++.+|+.++-... ......|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 56889999999999999999975 799999999999999998765 2579999999998763211 2356788
Q ss_pred EEcCCC
Q 025534 180 IGDLAD 185 (251)
Q Consensus 180 i~D~~~ 185 (251)
+.+.|.
T Consensus 102 v~NlPy 107 (262)
T PF00398_consen 102 VGNLPY 107 (262)
T ss_dssp EEEETG
T ss_pred EEEecc
Confidence 888763
No 215
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.02 E-value=3e-05 Score=67.96 Aligned_cols=108 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred CCCeEEEEecCchHHHH-HHHh-cCCCcEEEEEECChHHHHHHHhchh-cccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~-~l~~-~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.|++|+-||+|.==++. .+++ +.....|+++|+||+.++.+++-.. ..+ ...+++++.+|+.+.-.. -..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~d-l~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTYD-LKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-GG-----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhccccc-cccCCE
Confidence 46799999999765544 4443 3334689999999999999998765 222 246899999998764322 268999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++.+.-.....+ -.+.++. +.++++||.++++..
T Consensus 196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 9998764221123 3578898 799999999999875
No 216
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=3.5e-05 Score=65.86 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHH
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF 141 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 141 (251)
.+.++|||+|||+|.++..+++. ++.+|++||+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999997 56799999999977664
No 217
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.99 E-value=0.00013 Score=63.87 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES 175 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~ 175 (251)
...|-+||||.||.|-....++...+ ..+|...|.++..++..++.....+ -..-+++.++|+++. +.....+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence 35688999999999998877766433 3689999999999999998876443 234459999999886 3334567
Q ss_pred eeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 176 YDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 176 fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
.|++++.-- +-. |.+.+ -..-+.. +.+.+.|||.++ .++.| |++ .+.-|...|.+
T Consensus 210 P~l~iVsGL~ElF---~Dn~l-v~~sl~g-l~~al~pgG~lI-yTgQP--wHP--Qle~IAr~Lts 265 (311)
T PF12147_consen 210 PTLAIVSGLYELF---PDNDL-VRRSLAG-LARALEPGGYLI-YTGQP--WHP--QLEMIARVLTS 265 (311)
T ss_pred CCEEEEecchhhC---CcHHH-HHHHHHH-HHHHhCCCcEEE-EcCCC--CCc--chHHHHHHHhc
Confidence 888887642 211 10111 1234566 688999999887 56666 643 24445555544
No 218
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=6.6e-05 Score=67.58 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=82.4
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+.+|||-=+|+|.=+...+..-+..+|+.-|+||..++++++++..|. .....++..|+-.++.+....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 789999999999976555554343489999999999999999999872 3456777799999998767899999999
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
||. .|. +|+.. +.+..+.+|++.+-.
T Consensus 129 PFG----SPa------PFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFG----SPA------PFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC----CCc------hHHHH-HHHHhhcCCEEEEEe
Confidence 984 343 67777 678888899998754
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.91 E-value=0.00017 Score=63.75 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~ 178 (251)
.+..+|||++++.|+=+.+++.. .....|+++|+++.=+...++++...+ ..++.+...|+..+.... ...||.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccch
Confidence 34578999999999987777765 324699999999999999998876432 357888889999885433 346999
Q ss_pred EEEcCCCCCC----CCccc------------CCccHHHHHHHHcccC----CCCcEEEEecCCCCCCCChHHHHHHHHHH
Q 025534 179 IIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (251)
Q Consensus 179 Ii~D~~~~~~----~~p~~------------~l~~~ef~~~~~~~~L----~pgG~l~~~~~~p~~~~~~~~~~~i~~~l 238 (251)
|++|+|.... ..|.. .-...+.++. +.+.+ +|||+++--+++ +. ++....+.+.+
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS---~~-~eENE~vV~~f 234 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS---LS-PEENEEVVEKF 234 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH---HH-GGGTHHHHHHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc---HH-HHHHHHHHHHH
Confidence 9999984322 11210 0012567777 68899 999999876653 22 33344555555
Q ss_pred HhhCCce
Q 025534 239 RQVFKCG 245 (251)
Q Consensus 239 ~~~F~~v 245 (251)
-+.+|..
T Consensus 235 l~~~~~~ 241 (283)
T PF01189_consen 235 LKRHPDF 241 (283)
T ss_dssp HHHSTSE
T ss_pred HHhCCCc
Confidence 4445543
No 220
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.90 E-value=0.00014 Score=61.46 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=81.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHH----HHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~ 173 (251)
.++.+||-||..+|.+..+++.. .+...|.+||.+|.. +++|++ .+|+--+.+||+..-+- .-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence 34689999999999999999885 334689999999954 555554 36888899999864321 23
Q ss_pred CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec--CCCCC-CCChHHHHHHHHHHHhh
Q 025534 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~--~~p~~-~~~~~~~~~i~~~l~~~ 241 (251)
+..|+|+.|...|. .++-+... ++.-||+||.+++-. .+-.. ..+...++...+.|++.
T Consensus 142 ~~VDvI~~DVaQp~--------Qa~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~ 203 (229)
T PF01269_consen 142 EMVDVIFQDVAQPD--------QARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEE 203 (229)
T ss_dssp --EEEEEEE-SSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCT
T ss_pred ccccEEEecCCChH--------HHHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHc
Confidence 68999999987543 12334555 567899999777532 11110 23456888889999874
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.89 E-value=2.1e-05 Score=69.58 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCC----CeEEEEcchHHHH-hc----
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP----RLELVINDARAEL-ES---- 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~----rv~~~~~D~~~~l-~~---- 171 (251)
++...+|+||||-|+-+....+. +...++++||...-|+.|++....... ... .+.++.+|...-. ..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~--r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKN--RFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHh--hhhcccceeEEEEeccchhHHHHhccC
Confidence 56678999999999977665553 577999999999999999987642110 011 3688999976532 11
Q ss_pred CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+.+||+|-+....|..... .-...-+++. +.++|+|||+++--.
T Consensus 193 ~dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence 23449999987654431111 0112346777 689999999998643
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.86 E-value=0.00013 Score=61.02 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCCeEEEEecCchH----HHHHHHh---c-CC-CcEEEEEECChHHHHHHHhc------------------h-hcccCCC
Q 025534 102 NPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF 153 (251)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------~-~~~~~~~ 153 (251)
.+-||+-.||++|- ++..+.. . .+ .-+|++.|||+.+++.|++- | ...++.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46789999999996 3333333 1 11 24899999999999999862 1 1111111
Q ss_pred C-----CCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 154 S-----DPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 154 ~-----~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~-~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
. ..+|++...|..+ .....++||+|+|---- -. .+ -.....++. +.+.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF--~~---~~~~~vl~~-l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF--DP---ETQQRVLRR-LHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS---H---HHHHHHHHH-HGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe--CH---HHHHHHHHH-HHHHcCCCCEEEEec
Confidence 1 2478888888877 12235789999996320 00 11 113567787 799999999998743
No 223
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.83 E-value=0.00016 Score=60.58 Aligned_cols=132 Identities=15% Similarity=0.104 Sum_probs=82.7
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch-HHHHh---cCCCceeEEE
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKESYDVII 180 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~-~~~l~---~~~~~fD~Ii 180 (251)
+||+||+|+|.-+.+++++.+.-+..--|.++......+.+....+.....+-+.+-..+. ..+.. ...+.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999887665678889999998776666654221100112233322222 22210 1246899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC---CChHHHHHHHHHHHhhCC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~---~~~~~~~~i~~~l~~~F~ 243 (251)
+--.-|. .| + -.+..+|+. +.++|++||.|++.. |-.. ...+...++-..||+.-|
T Consensus 108 ~~N~lHI--~p-~-~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 108 CINMLHI--SP-W-SAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred ehhHHHh--cC-H-HHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence 8755333 12 1 124678888 799999999999875 2001 124556666677776544
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.82 E-value=0.00014 Score=65.35 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=75.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.++.++||||+++|+.+..++++ + .+|++||..+..-. . ..+++|+.+.+|++.+... .+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G-~~V~AVD~g~l~~~-L----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-G-MFVTAVDNGPMAQS-L----------MDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-C-CEEEEEechhcCHh-h----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 35689999999999999999997 4 49999996552211 1 1468999999999998643 57899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCC--cEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg--G~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+|... .|. ...+. +.+.|..| ...++|.--|. ..+.+..+..++.+.+.
T Consensus 276 cDmve----~P~------rva~l-m~~Wl~~g~cr~aIfnLKlpm-k~r~~~v~~~l~~i~~~ 326 (357)
T PRK11760 276 CDMVE----KPA------RVAEL-MAQWLVNGWCREAIFNLKLPM-KKRYEEVRQCLELIEEQ 326 (357)
T ss_pred Eeccc----CHH------HHHHH-HHHHHhcCcccEEEEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence 99863 331 33444 45555544 24455543231 33444455555555543
No 225
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.82 E-value=5.6e-05 Score=66.05 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc----c--------c---C---------------
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----N--------K---E--------------- 151 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~----~--------~---~--------------- 151 (251)
.+.+||+-|||.|-++.++++. + -.+.+.|.|--|+=..+--+.. + . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999997 4 5899999999886543321110 0 0 0
Q ss_pred ------CCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 152 ------~~~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
.....++.+..||..++.... .++||+|+..-|-.. +..+ .++++. +.++||||| +.+|.||.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni--~~Yi~t-I~~lLkpgG-~WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENI--IEYIET-IEHLLKPGG-YWINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHH--HHHHHH-HHHHhccCC-EEEecCCc
Confidence 012347889999988876443 479999998755222 1122 378888 799999999 55688765
No 226
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.78 E-value=2.4e-05 Score=66.59 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCeEEEEecCchHHHHHHHhcCCC--cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-Hhc--CCCcee
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESYD 177 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~--~~~~fD 177 (251)
+.++|++|||.|.+..-+++..+. -.|.++|.+|.++++.+++-..+ ..++....-|.-.- +.. ..+.+|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCccc
Confidence 447999999999999888886444 58999999999999999875433 23444433333211 111 246789
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+|++----.. ..| +.. ...+.. +.++|||||.+++-.
T Consensus 147 ~it~IFvLSA-i~p-ek~--~~a~~n-l~~llKPGG~llfrD 183 (264)
T KOG2361|consen 147 IITLIFVLSA-IHP-EKM--QSVIKN-LRTLLKPGGSLLFRD 183 (264)
T ss_pred eEEEEEEEec-cCh-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence 7766421100 012 111 356777 699999999998753
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00017 Score=60.44 Aligned_cols=126 Identities=21% Similarity=0.278 Sum_probs=81.6
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCC-CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-----HHhc-C-
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-R- 172 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-----~l~~-~- 172 (251)
.+..+|+|||+.-|+.+..+++.-+ ...|++||+.|.- ..+++.++.+|..+ -+.. .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4578999999999999999888633 2359999998742 23568888887653 1211 1
Q ss_pred CCceeEEEEcCCCCCCCCc-ccCCcc----HHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534 173 KESYDVIIGDLADPIEGGP-CYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN 247 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p-~~~l~~----~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (251)
..+.|+|++|......... ..+..+ ...++. +...|+|||.+++.. + ..+....+++.++..|..|..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~-----f-qg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV-----F-QGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE-----E-eCCCHHHHHHHHHHhhceeEE
Confidence 3457999999864221111 011111 112232 358999999998764 2 233456888888888888765
Q ss_pred e
Q 025534 248 L 248 (251)
Q Consensus 248 ~ 248 (251)
+
T Consensus 182 ~ 182 (205)
T COG0293 182 F 182 (205)
T ss_pred e
Confidence 4
No 228
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.65 E-value=0.00041 Score=59.37 Aligned_cols=99 Identities=24% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~I 179 (251)
..+++||.+|=.+-......+... .++|+++|||+++++..++.....+ -+++.++.|.++-+... .++||++
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEE
Confidence 357999999987776544444433 3799999999999999988766442 24999999999988653 5899999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCc
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG 213 (251)
+.|||.-.. + .. -|... .-..||..|
T Consensus 117 ~TDPPyT~~-G--~~----LFlsR-gi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPPYTPE-G--LK----LFLSR-GIEALKGEG 142 (243)
T ss_dssp EE---SSHH-H--HH----HHHHH-HHHTB-STT
T ss_pred EeCCCCCHH-H--HH----HHHHH-HHHHhCCCC
Confidence 999874210 1 12 35555 356677766
No 229
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00021 Score=64.94 Aligned_cols=111 Identities=22% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCeEEEEecCchHHHHHHHhcCC--------------------------------Cc-------EEEEEECChHHHHHHH
Q 025534 103 PKTIFIMGGGEGSTAREILRHKT--------------------------------VE-------KVVMCDIDEEVVEFCK 143 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~--------------------------------~~-------~v~~VEid~~vi~~a~ 143 (251)
....+|-=||+|+++.+++-... .+ .+.++|+|+.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 36799999999999988876431 01 3779999999999999
Q ss_pred hchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCc---ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 144 ~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p---~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.|....+ ....+++..+|+..+-... +.+|+||+|||.....+. ...|| ++|-+. +++.++--+.+++-+
T Consensus 272 ~NA~~AG---v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAG---VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcC---CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEEc
Confidence 9976443 3568999999988763222 789999999985432111 11233 466666 678888777777643
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.62 E-value=0.00032 Score=59.10 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=69.8
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~---~~~fD~ 178 (251)
.+..|+|.-||.|+.+...+.+. ..|.+||+||.-|.+|+++++.-+ -..|+++++||..+..... ...+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhheeee
Confidence 56778888888777776666654 489999999999999999987654 2349999999998876542 345778
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~ 214 (251)
++..++ |. +|. ....+.|. +..++.|.|.
T Consensus 169 vf~spp--wg-gp~--y~~~~~~D--L~~~~~p~~~ 197 (263)
T KOG2730|consen 169 VFLSPP--WG-GPS--YLRADVYD--LETHLKPMGT 197 (263)
T ss_pred eecCCC--CC-Ccc--hhhhhhhh--hhhhcchhHH
Confidence 777654 42 442 12233343 3566666654
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.59 E-value=0.00057 Score=57.52 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=70.9
Q ss_pred EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~ 185 (251)
|.||||--|.++.+|++...+.+++++|+++.-++.|+++....+ ...+++++.+|+.+.+.. ++..|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIA--- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIA--- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEe---
Confidence 689999999999999998767789999999999999999987543 347999999999998743 3447999987
Q ss_pred CCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 186 ~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+... ....++++. ....++..-.|+++-
T Consensus 74 ----GMGG-~lI~~ILe~-~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 74 ----GMGG-ELIIEILEA-GPEKLSSAKRLILQP 101 (205)
T ss_dssp ----EE-H-HHHHHHHHH-TGGGGTT--EEEEEE
T ss_pred ----cCCH-HHHHHHHHh-hHHHhccCCeEEEeC
Confidence 3322 224566776 466676666788763
No 232
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.57 E-value=0.00013 Score=64.61 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc----hHHHHhcCCCcee
Q 025534 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELESRKESYD 177 (251)
Q Consensus 103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D----~~~~l~~~~~~fD 177 (251)
.-++||||+|.-.+ +....+..+ -++++.|||+..++.|+++...|.. ...+|+++... .+..+....+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence 46899999998876 343344444 5999999999999999999987621 35789887653 2222333457999
Q ss_pred EEEEcCCC
Q 025534 178 VIIGDLAD 185 (251)
Q Consensus 178 ~Ii~D~~~ 185 (251)
+.+|+||.
T Consensus 180 ftmCNPPF 187 (299)
T PF05971_consen 180 FTMCNPPF 187 (299)
T ss_dssp EEEE----
T ss_pred EEecCCcc
Confidence 99999973
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.56 E-value=0.00058 Score=57.46 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=59.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCCCCCCeEEEEcchHHH--HhcCCC
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAE--LESRKE 174 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~~~~rv~~~~~D~~~~--l~~~~~ 174 (251)
+..-.+|||+|.|-....++...+..+..+||+.+...+.|++..... .-.....++++..+|..+. ....-.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 456799999999998877765556678999999999999887643210 0012346889999997543 221114
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
.-|+|+++.+.- .+ .+ ...+.. ....||+|-+++.
T Consensus 122 ~AdvVf~Nn~~F---~~--~l--~~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTCF---DP--DL--NLALAE-LLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TTT----H--HH--HHHHHH-HHTTS-TT-EEEE
T ss_pred CCCEEEEecccc---CH--HH--HHHHHH-HHhcCCCCCEEEE
Confidence 579999986521 11 01 122333 3467888877764
No 234
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.55 E-value=0.00011 Score=64.98 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCeEEEEecCchH----HHHHHHhc----CCCcEEEEEECChHHHHHHHhch------------------hcc-c--CC
Q 025534 102 NPKTIFIMGGGEGS----TAREILRH----KTVEKVVMCDIDEEVVEFCKSYL------------------VVN-K--EA 152 (251)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~------------------~~~-~--~~ 152 (251)
.+-||+..||.+|- ++..+... ...-+|++.|||+.+++.|++-. ... + +.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999996 33333332 11247999999999999998731 100 0 00
Q ss_pred -C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcC-CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 153 -F-----SDPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 153 -~-----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~-~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+ -..+|++...|..+.-....++||+|+|-. .-.. .+ -.....++. +.+.|+|||.|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEeC
Confidence 0 114566777776542101136899999942 2111 11 123567888 799999999988743
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.51 E-value=0.00031 Score=54.92 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=46.1
Q ss_pred EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcch
Q 025534 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA 165 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~ 165 (251)
+||+|||.|..+..+++..+..+|+++|.+|.+.+.+++++..++ -++++++....
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~al 57 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAAV 57 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEeee
Confidence 799999999999998887554589999999999999999987653 24577777654
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0021 Score=53.54 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=86.2
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh--cCCCceeE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~--~~~~~fD~ 178 (251)
..+.+||-||..+|.+..+++.--+...|.+||.+|++.+-.- .... ..+|+-=+.+||+.--+ ..-+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl---~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL---DVAE---KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH---HHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence 4578999999999999999998755568999999998765322 2111 24677778888864321 12367999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCc--EEEEecCCCCC-CCChHHHHHHHHHHHhhC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGI-FSHTEVFSCIYNTLRQVF 242 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG--~l~~~~~~p~~-~~~~~~~~~i~~~l~~~F 242 (251)
|+.|...|.. +.=+... +..-|+++| ++++...+-.+ ....+.+++..+.|++-+
T Consensus 149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 9999875541 1234445 578899999 55555443221 123467887888888764
No 237
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.00065 Score=57.48 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=69.9
Q ss_pred CCeEEEEecCchHHHHHHH-hcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+++++|||+|.|.=+.-++ -.+. .+||.+|.+..=+...++-.... .-++++++++.+.++-.+... ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~~~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEKKQ-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccccc-CcEEEe
Confidence 6899999999996333332 2344 56999999998887776654322 346899999999988532222 999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-+..+. ..+.+- +...+++||.+++.-
T Consensus 142 RAva~L----------~~l~e~-~~pllk~~g~~~~~k 168 (215)
T COG0357 142 RAVASL----------NVLLEL-CLPLLKVGGGFLAYK 168 (215)
T ss_pred ehccch----------HHHHHH-HHHhcccCCcchhhh
Confidence 876432 134455 578999999876543
No 238
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.37 E-value=0.00046 Score=61.84 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=72.1
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~ 183 (251)
...+|+|+|.|.+++.++.+++ +|.+++.|..-+..++.++. |.|+.+.+|+++-+ .+-|+|++-.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~----P~~daI~mkW 244 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT----PKGDAIWMKW 244 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC----CCcCeEEEEe
Confidence 6789999999999999998654 69999999888887777642 34888999976642 3456999875
Q ss_pred C-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 184 A-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 184 ~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
- .+|.+. . -..|++. +++.|+|+|.+++--
T Consensus 245 iLhdwtDe---d--cvkiLkn-C~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 245 ILHDWTDE---D--CVKILKN-CKKSLPPGGKIIVVE 275 (342)
T ss_pred ecccCChH---H--HHHHHHH-HHHhCCCCCEEEEEe
Confidence 4 334211 1 1479999 599999999887643
No 239
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00028 Score=66.00 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-C---Cce
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K---ESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~---~~f 176 (251)
+..+-+||+.||+|.++..+++. +.+|.+||++|+.++-|+++...|+ -.+.+++++-+.+.+... . ..=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCCC
Confidence 45578999999999999998885 5799999999999999999988774 468999999766655431 1 233
Q ss_pred e-EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhC
Q 025534 177 D-VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (251)
Q Consensus 177 D-~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (251)
+ ++|+|++... . ...+++. +++.-++.=.+.+.++++ ...+.+...++..+
T Consensus 456 ~~v~iiDPpR~G---l-----h~~~ik~-l~~~~~~~rlvyvSCn~~------t~ar~v~~lc~~~~ 507 (534)
T KOG2187|consen 456 TLVAIIDPPRKG---L-----HMKVIKA-LRAYKNPRRLVYVSCNPH------TAARNVIDLCSSPK 507 (534)
T ss_pred ceEEEECCCccc---c-----cHHHHHH-HHhccCccceEEEEcCHH------HhhhhHHHhhcCcc
Confidence 4 7888887432 1 2345555 444444555554444322 11344555555444
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.31 E-value=0.0015 Score=57.50 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-HHHhcCCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-~~l~~~~~~fD~I 179 (251)
.|++|||+|+|.|..+..+... +...++++||.++.++++++.-+.... ....... ..+.. +.. .-.+.|+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~-~~~~~~~~~--~~~~~DLv 106 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEW-RRVLYRDFL--PFPPDDLV 106 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc---ccccchh-hhhhhcccc--cCCCCcEE
Confidence 5789999999999876655543 245689999999999999998654221 0111111 11110 111 11345999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
++.-.-.. -+ . -...++.+. +.+.+++ =++++.-+.| ..-+.+..+.+.|.+.
T Consensus 107 i~s~~L~E--L~-~-~~r~~lv~~-LW~~~~~-~LVlVEpGt~---~Gf~~i~~aR~~l~~~ 159 (274)
T PF09243_consen 107 IASYVLNE--LP-S-AARAELVRS-LWNKTAP-VLVLVEPGTP---AGFRRIAEARDQLLEK 159 (274)
T ss_pred EEehhhhc--CC-c-hHHHHHHHH-HHHhccC-cEEEEcCCCh---HHHHHHHHHHHHHhhC
Confidence 98632111 11 1 122456666 5566665 3444454544 2234555555555543
No 241
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.31 E-value=0.0024 Score=53.88 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=82.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++..++.||||--+.++.+|.+...+..++++|+++--++.|.++++.+. ..+++++..+|+..-+. .++.+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~-~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLE-LEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccC-ccCCcCEEE
Confidence 45667999999999999999997677899999999999999999998664 46899999999977764 345799999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+.- ... ..=.+++++ -++.|+.-=.+++|
T Consensus 91 IAG-------MGG-~lI~~ILee-~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAG-------MGG-TLIREILEE-GKEKLKGVERLILQ 119 (226)
T ss_pred EeC-------CcH-HHHHHHHHH-hhhhhcCcceEEEC
Confidence 873 211 223467777 57777754466665
No 242
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.00097 Score=62.63 Aligned_cols=105 Identities=18% Similarity=0.342 Sum_probs=77.0
Q ss_pred CeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHh-chhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
..++++|+|-|-+....++. ..--++.+||.||.++-..+. ++.. + +.+|+++..|.|.|-. +.++-|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W-~~~Vtii~~DMR~w~a-p~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----W-DNRVTIISSDMRKWNA-PREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----h-cCeeEEEeccccccCC-chhhccc
Confidence 34778999999887666552 112378999999999887664 2321 1 4799999999999963 2489999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|++.+.... + ..-.++|.+.. +.+.|||+|+.+-..
T Consensus 443 ~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 443 IVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred hHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence 999876443 2 12346888898 799999999987544
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.21 E-value=0.011 Score=53.09 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=71.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE--EEcchHHHHh---c
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE---S 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~--~~~D~~~~l~---~ 171 (251)
+++..++++|||+|.=.+.|++. ....+.+.||+|.+.++.+.+.+... .-|.+++ +++|..+-+. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 45568999999999865555442 12357999999999999998887621 2366766 7887765433 2
Q ss_pred C--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcc-cCCCCcEEEEec
Q 025534 172 R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (251)
Q Consensus 172 ~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~-~L~pgG~l~~~~ 219 (251)
. .....+|+.=-..-.+..| .-...|++. +++ .|+|||.+++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~---~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSR---PEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccCCCH---HHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1 2335565543211110112 223578888 788 999999988754
No 244
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00037 Score=64.88 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=83.3
Q ss_pred CCCCeEEEEecCchHHHHHHHh-cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC---Cce
Q 025534 101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~---~~f 176 (251)
.++-+||+.=+++|.-+...++ .+++.+|++-|.|+..++..+++..+|. ....++..++|+....-... +.|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 3467899988888886554444 4778899999999999999999998875 45688999999988765444 889
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+|=+|++. .| ..|+.. +-+.+++||+|.+-+
T Consensus 185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence 999999884 22 267787 688999999998754
No 245
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.14 E-value=0.0059 Score=45.86 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=65.2
Q ss_pred EEEEecCchHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-HhcCC-CceeEEEEc
Q 025534 106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD 182 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~~-~~fD~Ii~D 182 (251)
++++|||+|... .+...... ..++++|+++.++..++..... . ....+.+..+|.... +.... ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 33333221 3788899999999985544321 1 011168888887662 33233 479999333
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
...... . ....+.. +.+.|+|+|.+++...
T Consensus 127 ~~~~~~-~------~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLL-P------PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcC-C------HHHHHHH-HHHhcCCCcEEEEEec
Confidence 322110 0 3567777 6899999998887653
No 246
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.99 E-value=0.011 Score=54.30 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=92.0
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
++.||||+++..|+=+.+++.. ..-..|.+.|.+..-++..+.++...+ -.+.-+...|+++|-.+ ...+||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccccee
Confidence 3589999999999866666553 233589999999999999988876543 35678888999887533 23489999
Q ss_pred EEcCCCCCC---CCcc-------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 180 IGDLADPIE---GGPC-------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 180 i~D~~~~~~---~~p~-------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
++|+|.... ..+. ..-+.++.+.. .-+.+++||+|+-.+++ .. .+......+.+-..||
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCS---I~-~~ENE~vV~yaL~K~p 391 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCS---IT-VEENEAVVDYALKKRP 391 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeee---cc-hhhhHHHHHHHHHhCC
Confidence 999985321 0010 00012456666 57899999999876544 22 3445566666666676
Q ss_pred cee
Q 025534 244 CGY 246 (251)
Q Consensus 244 ~v~ 246 (251)
.+.
T Consensus 392 ~~k 394 (460)
T KOG1122|consen 392 EVK 394 (460)
T ss_pred ceE
Confidence 653
No 247
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.96 E-value=0.0033 Score=55.03 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCCeEEEEecCchH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhc-hh-cc-----------------cCC-
Q 025534 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSY-LV-VN-----------------KEA- 152 (251)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~-~~-~~-----------------~~~- 152 (251)
.+-||+-.||++|- ++..+.+..+ .-+|++.|||..+++.|++- .+ .. .+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36789999999995 4555555432 35899999999999999862 11 00 000
Q ss_pred C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 153 F-----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 153 ~-----~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+ -...|++-..|...--. ..+.||+|+|=----. ...-...+.+.. .+..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIY----Fd~~~q~~il~~-f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIY----FDEETQERILRR-FADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEe----eCHHHHHHHHHH-HHHHhCCCCEEEEc
Confidence 0 01233444444322110 2357999999521000 001123567777 78999999999874
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.94 E-value=0.0052 Score=51.32 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=82.6
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc----cCCCCCCCeEEEEcchHHHHhcC--CCce
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESY 176 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~----~~~~~~~rv~~~~~D~~~~l~~~--~~~f 176 (251)
.-.+.|||||-|++...|+...+...|.+.||--.|.+..++..... .+. .-+++.+....+..|+.+- ..+-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhccc
Confidence 35689999999999999998877789999999999999988875321 111 2578899999999998652 2344
Q ss_pred eEEEEcCCCCCC--CCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 177 DVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 177 D~Ii~D~~~~~~--~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+-++.-.++|.. ......+.+.....+ +.-+|++||++..-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~yti 182 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTI 182 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEE
Confidence 444444444431 111245666777777 68899999998764
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.92 E-value=0.0025 Score=59.75 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=62.2
Q ss_pred hHHHHHHHh-Hhh-cCCCCCeEEEEecCchHHHHHHHhcCCCcEEE--EEECChHHHHHHHhc-hhcccCCCCCCCeEEE
Q 025534 87 IYHESLVHP-ALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LVVNKEAFSDPRLELV 161 (251)
Q Consensus 87 ~y~e~l~~~-~~~-~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~~ 161 (251)
.|.+.+..+ +.. ....-+.+||+|||.|+++.+++.+ ++..++ .-|..+..++.|-+. ++. -+-+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa--------~~~~- 169 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPA--------MIGV- 169 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcch--------hhhh-
Confidence 466655432 321 2223467999999999999999886 332222 123334445554432 111 0000
Q ss_pred EcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 162 INDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 162 ~~D~~~~l~~~~~~fD~Ii~D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
.+ -.-+.-..+.||+|=+.-. .+|. +...+ ++-+ +.|+|+|||.++ .+++|
T Consensus 170 ~~--s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv-~S~pp 221 (506)
T PF03141_consen 170 LG--SQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFV-LSGPP 221 (506)
T ss_pred hc--cccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEE-ecCCc
Confidence 01 1112234678999876543 3442 11111 2334 689999999876 55566
No 250
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.89 E-value=0.0009 Score=57.26 Aligned_cols=81 Identities=22% Similarity=0.185 Sum_probs=49.2
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh---cccCC--CCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEA--FSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~--~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.+|||.=+|-|.=+.-++.. + .+|+++|-||.+..+.+.-+. ..... ..-.|++++++|..+|++...+.||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999888888877766654 4 589999999999888775432 11100 00148999999999999865789999
Q ss_pred EEEcCCCC
Q 025534 179 IIGDLADP 186 (251)
Q Consensus 179 Ii~D~~~~ 186 (251)
|.+||-.|
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99999544
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.89 E-value=0.0062 Score=54.25 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CC-Ccee
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~-~~fD 177 (251)
++..++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+... ..|+++++++..++... .+ +++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 446899999999999999988633379999999999999999876422 35899999998876532 12 5799
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
.|+.|.-
T Consensus 95 gIl~DLG 101 (305)
T TIGR00006 95 GILVDLG 101 (305)
T ss_pred EEEEecc
Confidence 9999973
No 252
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.85 E-value=0.0039 Score=49.17 Aligned_cols=106 Identities=24% Similarity=0.183 Sum_probs=63.5
Q ss_pred EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCC-CCCCC--CcccCCccHHHHHH
Q 025534 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLA-DPIEG--GPCYKLYTKSFYEF 203 (251)
Q Consensus 128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~~fD~Ii~D~~-~~~~~--~p~~~l~~~ef~~~ 203 (251)
+|.+.||-+++++.+++.+...+ ...|++++++.=.+...-.+ ++.|+++.|.- -|..+ .....-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58899999999999999886442 23589999876554333223 48999999973 34311 00111234567777
Q ss_pred HHcccCCCCcEEEEec--CCCCCCCChHHHHHHHHHHHh
Q 025534 204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 204 ~~~~~L~pgG~l~~~~--~~p~~~~~~~~~~~i~~~l~~ 240 (251)
+.++|+|||++++-. |+|. ..+....+.+.+++
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~g---G~eE~~av~~~~~~ 112 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHPG---GKEESEAVEEFLAS 112 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STCH---HHHHHHHHHHHHHT
T ss_pred -HHHhhccCCEEEEEEeCCCCC---CHHHHHHHHHHHHh
Confidence 689999999887655 4441 23444455555543
No 253
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.012 Score=53.37 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=83.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhc--CC--CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh------
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------ 170 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~------ 170 (251)
.+..+|||++..-|+=+..++.. .. ...|.+-|.|+.=+...++-.... ..+++.+...|+-.+-.
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence 45689999999999977766653 21 238999999998777766544322 23445554444433211
Q ss_pred --cCCCceeEEEEcCCCCCC----CCcc-------------cCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHH
Q 025534 171 --SRKESYDVIIGDLADPIE----GGPC-------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF 231 (251)
Q Consensus 171 --~~~~~fD~Ii~D~~~~~~----~~p~-------------~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~ 231 (251)
.....||-|++|.+.... ..+. -+......+.. ..+.||+||.++-.+++-+..-+....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 123589999999983221 0110 01112345555 368999999999776543223344456
Q ss_pred HHHHHHHHhhCCc
Q 025534 232 SCIYNTLRQVFKC 244 (251)
Q Consensus 232 ~~i~~~l~~~F~~ 244 (251)
+.+++..+..|+-
T Consensus 309 ~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 309 QEALQKVGGAVEL 321 (375)
T ss_pred HHHHHHhcCcccc
Confidence 6666666555543
No 254
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.81 E-value=0.0066 Score=51.14 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=66.3
Q ss_pred CCCCeEEEEecCchHHHHH--HHhcCCCcEEEEEECChHHHHHHHhchhccc-C--------------------------
Q 025534 101 PNPKTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E-------------------------- 151 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~-------------------------- 151 (251)
..|-.+-|-+||+|.++.- +++......|.+-|+|++++++|++|+.+.. +
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4577899999999997643 3444446789999999999999999875321 0
Q ss_pred -----------CCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCC----CCCC-CcccCCccHHHHHHHHcccCCC
Q 025534 152 -----------AFSDPRLELVINDARAELE----SRKESYDVIIGDLAD----PIEG-GPCYKLYTKSFYEFVVKPRLNP 211 (251)
Q Consensus 152 -----------~~~~~rv~~~~~D~~~~l~----~~~~~fD~Ii~D~~~----~~~~-~p~~~l~~~ef~~~~~~~~L~p 211 (251)
.-......+...|.++.-. .....-|+|+.|.|. .|.. .+. --...++.. +...|-+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~--~p~~~ml~~-l~~vLp~ 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG--GPVAQMLNS-LAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H--HHHHHHHHH-HHCCS-T
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC--CcHHHHHHH-HHhhCCC
Confidence 0012346788888877532 123456999999984 3432 111 113578898 8999976
Q ss_pred CcEEEE
Q 025534 212 EGIFVT 217 (251)
Q Consensus 212 gG~l~~ 217 (251)
++++++
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 777777
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.80 E-value=0.003 Score=55.54 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=78.5
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~ 183 (251)
+|+++.||.|++...+.+. +...+.++|+|+.+++..+++++. .++.+|..++.... ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~----------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN----------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC----------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998887765 456789999999999999988641 15667776654332 45799999999
Q ss_pred CCCCC--C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534 184 ADPIE--G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV 241 (251)
Q Consensus 184 ~~~~~--~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~ 241 (251)
|.... . .+...| -.++++. + +.++|.=+++=|+ +.... ....+..+.+.|.+.
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEEL 134 (275)
T ss_pred CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhC
Confidence 74211 0 111112 2356654 3 4568875544343 32221 245677787877764
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.012 Score=48.59 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chH---HHHh----cC
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR---AELE----SR 172 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~---~~l~----~~ 172 (251)
+..+|||+|+..|+.+.-+.+. .+...|.+||+- ++.- .+.+.++.+ |.. .+.+ .+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEP------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccC------CCCcccccccccCCHHHHHHHHHhCC
Confidence 4578999999999988777665 356789999983 3221 123444444 332 2211 13
Q ss_pred CCceeEEEEcCCCCCCCCc--ccCCccHHHHHHH---HcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534 173 KESYDVIIGDLADPIEGGP--CYKLYTKSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN 247 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p--~~~l~~~ef~~~~---~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (251)
+.+.|+|++|...... +. ..+....+....+ .-..++|+|.++... |... .-..+.+.|.++|..|..
T Consensus 134 ~r~VdvVlSDMapnaT-Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~-----w~g~-e~~~l~r~l~~~f~~Vk~ 206 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNAT-GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL-----WDGS-EEALLQRRLQAVFTNVKK 206 (232)
T ss_pred CCcccEEEeccCCCCc-CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE-----ecCC-chHHHHHHHHHHhhhcEe
Confidence 5789999999763211 21 1122222222110 246788999999865 3222 234555667777776653
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.74 E-value=0.0055 Score=52.82 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+.+.+|+|||||.-=++.-.....+...+.++|||..+++....++... .++.++...|...- ...+..|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchhh
Confidence 5589999999998877765555544569999999999999999998754 36778888885432 2357799888
Q ss_pred Ec
Q 025534 181 GD 182 (251)
Q Consensus 181 ~D 182 (251)
+=
T Consensus 177 ll 178 (251)
T PF07091_consen 177 LL 178 (251)
T ss_dssp EE
T ss_pred HH
Confidence 74
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0079 Score=51.39 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD 177 (251)
..+.+.+||||.-||+++-.+++. ++.+|.+||..-..+.+--+ ++||+.++..-=..++.. ..+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhhCCHHHcccCCC
Confidence 457799999999999999999996 57899999997655554322 467876655332333322 235789
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|++|... .+ ....+.. +...|+|++.++.-
T Consensus 147 ~~v~DvSF----IS-----L~~iLp~-l~~l~~~~~~~v~L 177 (245)
T COG1189 147 LIVIDVSF----IS-----LKLILPA-LLLLLKDGGDLVLL 177 (245)
T ss_pred eEEEEeeh----hh-----HHHHHHH-HHHhcCCCceEEEE
Confidence 99999742 11 1233444 56677777766543
No 259
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.73 E-value=0.013 Score=55.65 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCeEEEEecCchHHHHHHHhcCC----CcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh----cCC
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----SRK 173 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~----~~~ 173 (251)
...+|.|.-||+|++.....++-. ...+.+.|+++....+|+-++-+++... .+.+.++|-..-.. ...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCCc
Confidence 446899999999998776665421 2568999999999999999987665311 45566666433221 123
Q ss_pred CceeEEEEcCCCC---CCC--------------C-cccCCcc-HHHHHHHHcccCCCCcEEEEec
Q 025534 174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 174 ~~fD~Ii~D~~~~---~~~--------------~-p~~~l~~-~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
++||.|+.+||.. |.. + +...-.. ..|++. +...|+|+|...+-.
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaivl 326 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIVL 326 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEEe
Confidence 6799999999842 110 0 0001111 568888 689999988555443
No 260
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.73 E-value=0.0017 Score=53.78 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++++|||+|.|+|..+...++. +...|...|++|-.+...+-+...|+ -.+.+...|..- .+..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~g----~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLIG----SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeeccccC----CCcceeEEEe
Confidence 4799999999999999888875 56799999999998888888777653 467888888533 4678999886
Q ss_pred -cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 182 -D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
|.+... .. ....+. + +++|+..|..++
T Consensus 149 gDlfy~~----~~---a~~l~~-~-~~~l~~~g~~vl 176 (218)
T COG3897 149 GDLFYNH----TE---ADRLIP-W-KDRLAEAGAAVL 176 (218)
T ss_pred eceecCc----hH---HHHHHH-H-HHHHHhCCCEEE
Confidence 444211 11 112233 2 566777776665
No 261
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.71 E-value=0.0025 Score=53.52 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=50.7
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++...|-|+|||.+.++..+-. . -+|...|+-+ .++ .++..|... +.-.++..|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~--~-~~V~SfDLva-----------------~n~--~Vtacdia~-vPL~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN--K-HKVHSFDLVA-----------------PNP--RVTACDIAN-VPLEDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SST--TEEES-TTS--S--TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhccc--C-ceEEEeeccC-----------------CCC--CEEEecCcc-CcCCCCceeEE
Confidence 34456799999999999976532 1 3577777732 123 355677643 33346899999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|..+.--. . --.+|+++ +.|+|||||.|.+--
T Consensus 127 VfcLSLMG---T----n~~~fi~E-A~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 127 VFCLSLMG---T----NWPDFIRE-ANRVLKPGGILKIAE 158 (219)
T ss_dssp EEES---S---S-----HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEhhhhC---C----CcHHHHHH-HHheeccCcEEEEEE
Confidence 99875321 1 12488999 799999999987743
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.68 E-value=0.016 Score=52.38 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=63.8
Q ss_pred CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhcCCCce
Q 025534 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~~~~~f 176 (251)
.++++|++.|+| .|.++.++++..+ ++|++++.+++-.+.|++.-. -.++. .|..+-+ .+.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~---~~~~ 230 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAV---KEIA 230 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHh---HhhC
Confidence 457899999987 2346777777555 799999999999999998622 12222 3333333 2459
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|+|+.-.. +. . +.. ..+.|+++|.+++-..+
T Consensus 231 d~ii~tv~-~~-----------~-~~~-~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-PA-----------T-LEP-SLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-hh-----------h-HHH-HHHHHhcCCEEEEECCC
Confidence 99998754 21 1 233 35789999999976654
No 263
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.60 E-value=0.0054 Score=48.28 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=52.6
Q ss_pred CCCCeEEEEecCchHHHHHHHh-----cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCc
Q 025534 101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES 175 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~ 175 (251)
.++.+|+|+|+|-|.++..++. .+ ..+|++||.++..++.++++....... -..++++..++...... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCNESLVESAQKRAQKLGSD-LEKRLSFIQGDIADESS--SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECCcHHHHHHHHHHHHhcch-hhccchhhccchhhhcc--cCC
Confidence 4568999999999999999888 53 469999999999999998875432211 12456666665444321 234
Q ss_pred eeEEEE
Q 025534 176 YDVIIG 181 (251)
Q Consensus 176 fD~Ii~ 181 (251)
.++++-
T Consensus 100 ~~~~vg 105 (141)
T PF13679_consen 100 PDILVG 105 (141)
T ss_pred CeEEEE
Confidence 454443
No 264
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.51 E-value=0.019 Score=49.23 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=80.7
Q ss_pred CCCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChH----HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~ 173 (251)
+...+||-||.++|....++... .+..-|.+||.++. .+.+|++ .+++--++.||+.--+- .-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45689999999999998888775 33457999999864 4455554 36777788998764321 12
Q ss_pred CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCC---CCChHHHHHHHHHHHh
Q 025534 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~---~~~~~~~~~i~~~l~~ 240 (251)
...|+|+.|.+.|.. ++-.... .+.-||+||-+++..-.+|. ......|+.-.+.|++
T Consensus 225 gmVDvIFaDvaqpdq--------~RivaLN-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqe 285 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQ--------ARIVALN-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQE 285 (317)
T ss_pred eeEEEEeccCCCchh--------hhhhhhh-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHH
Confidence 478999999875542 1112223 46789999988876543332 1234567777777764
No 265
>PRK11524 putative methyltransferase; Provisional
Probab=96.47 E-value=0.0094 Score=52.58 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=45.1
Q ss_pred CCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCC---CcccC-------CccHHHHHHHHcccCCCCcEEEEecC
Q 025534 155 DPRLELVINDARAELESR-KESYDVIIGDLADPIEG---GPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 155 ~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~---~p~~~-------l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
....+++++|+.++++.. +++||+|++|||..... ..... -+..+++.+ +.++|||||.+++...
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 345689999999988653 57899999999743200 11000 012467888 6999999999998653
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.45 E-value=0.0069 Score=50.86 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCCeEEEEecCchHHHHHHHh---c-CCCcEEEEEECChHHHH-HHHhchhcccCCCCCCCeEEEEcchHHH--Hhc--
Q 025534 101 PNPKTIFIMGGGEGSTAREILR---H-KTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAE--LES-- 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~---~-~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~-- 171 (251)
.+|..|+++|.-.|+.+...+. . .+.++|.+||||..-.. .+.+.-+ ..+|++++.||..+- +.+
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp------~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHP------MSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcc------ccCceEEEECCCCCHHHHHHHH
Confidence 3788999999999887765543 2 24579999999754432 2222212 237999999997532 221
Q ss_pred -C--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 172 -~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
. .....+|+.|+.+... + ...-++. +...+++|+.+++.
T Consensus 105 ~~~~~~~~vlVilDs~H~~~-----h--vl~eL~~-y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTHE-----H--VLAELEA-YAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS----S-----S--HHHHHHH-HHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCccHH-----H--HHHHHHH-hCccCCCCCEEEEE
Confidence 1 2356699999764321 1 1234455 57899999999874
No 267
>PTZ00357 methyltransferase; Provisional
Probab=96.44 E-value=0.011 Score=57.61 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=66.1
Q ss_pred eEEEEecCchHHHHHHHhc---CC-CcEEEEEECChHHHHHHHhch---h-ccc-CCCCCCCeEEEEcchHHHHhcC---
Q 025534 105 TIFIMGGGEGSTAREILRH---KT-VEKVVMCDIDEEVVEFCKSYL---V-VNK-EAFSDPRLELVINDARAELESR--- 172 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~---~~-~~~v~~VEid~~vi~~a~~~~---~-~~~-~~~~~~rv~~~~~D~~~~l~~~--- 172 (251)
.|+++|+|-|-+....++. .+ ..+|.+||.||..+...+... . +.. ......+|+++..|.|.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 4899999999887665552 11 247999999966443333221 1 211 0011468999999999984211
Q ss_pred -------CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCC----CcE
Q 025534 173 -------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI 214 (251)
Q Consensus 173 -------~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~p----gG~ 214 (251)
-+++|+||+.+...+ +- .-+++|.+.. +.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSF--GD--NELSPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSL--GD--NELSPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccc--cc--ccCCHHHHHH-HHHhhhhhcccccc
Confidence 137999999876444 21 2235677777 5777776 676
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.33 E-value=0.055 Score=47.23 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=68.6
Q ss_pred CCeEEEEecCchH--HHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---Hhc-----
Q 025534 103 PKTIFIMGGGEGS--TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES----- 171 (251)
Q Consensus 103 ~~~VL~iG~G~G~--~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~---l~~----- 171 (251)
-+..||||||-=. ..+++++. .+.++|..||.||.++.-+|.-+.-+. ..+..++.+|.++- +..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4789999998543 56777663 345799999999999998888765331 12489999998863 221
Q ss_pred ---CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 172 ---~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
.+++.=++++...+.... .-.-.+.++. +++.|.||..|++...... ..+...+.+...+++.
T Consensus 145 ~lD~~rPVavll~~vLh~v~D----~~dp~~iv~~-l~d~lapGS~L~ish~t~d--~~p~~~~~~~~~~~~~ 210 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPD----DDDPAGIVAR-LRDALAPGSYLAISHATDD--GAPERAEALEAVYAQA 210 (267)
T ss_dssp C--TTS--EEEECT-GGGS-C----GCTHHHHHHH-HHCCS-TT-EEEEEEEB-T--TSHHHHHHHHHHHHHC
T ss_pred cCCCCCCeeeeeeeeeccCCC----ccCHHHHHHH-HHHhCCCCceEEEEecCCC--CCHHHHHHHHHHHHcC
Confidence 123333555544322110 0112478888 7999999999988654331 2333444555555544
No 269
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.031 Score=49.45 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---C-CCcee
Q 025534 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESYD 177 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~-~~~fD 177 (251)
..-.+|.=.|.|+-+..+++. ++..+++++|.||.+++.|++.+... ++|++++++...++... . ..++|
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 467888888999999999886 44567999999999999999987533 37999999987665432 2 36899
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
-|+.|.-
T Consensus 99 GiL~DLG 105 (314)
T COG0275 99 GILLDLG 105 (314)
T ss_pred EEEEecc
Confidence 9999973
No 270
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.25 E-value=0.015 Score=50.47 Aligned_cols=102 Identities=23% Similarity=0.214 Sum_probs=64.3
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
...-|-|+|||.+-++. ..+ ..|...|+-+ .+-+++..|.++ +.-.+++.|+++.
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SER--HKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhhhh---ccc--cceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEEe
Confidence 34568889999998876 222 3566666521 234566777777 4455789999998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHH
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~ 237 (251)
.+.--. ..+ .+|+.+ +.|+|++||.+.+--.... +.+...+.+.+..
T Consensus 235 CLSLMg-----tn~--~df~kE-a~RiLk~gG~l~IAEv~SR-f~dv~~f~r~l~~ 281 (325)
T KOG3045|consen 235 CLSLMG-----TNL--ADFIKE-ANRILKPGGLLYIAEVKSR-FSDVKGFVRALTK 281 (325)
T ss_pred eHhhhc-----ccH--HHHHHH-HHHHhccCceEEEEehhhh-cccHHHHHHHHHH
Confidence 865211 112 489999 7999999999876542221 3344444444433
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.14 E-value=0.019 Score=51.28 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---hcC--CCce
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESR--KESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~--~~~f 176 (251)
+...++|.=.|.|+-+..+++..+..++.++|.||++++.+++.+... .+|+.+++++..++- ... ..++
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCcc
Confidence 456789988899999999987644489999999999999999886532 479999998876543 323 2589
Q ss_pred eEEEEcCC
Q 025534 177 DVIIGDLA 184 (251)
Q Consensus 177 D~Ii~D~~ 184 (251)
|.|+.|.-
T Consensus 95 dgiL~DLG 102 (310)
T PF01795_consen 95 DGILFDLG 102 (310)
T ss_dssp EEEEEE-S
T ss_pred CEEEEccc
Confidence 99999973
No 272
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.059 Score=50.51 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=74.1
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~ 184 (251)
++|.+|||.--+...+.+- +...|+.+|+|+.+++.....-.. ..+-.++...|..... -.++.||+|+.-.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~-fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV-FEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc-CCCcceeEEEecCc
Confidence 7999999998888877764 457899999999999987654321 3567888888876643 35689999997554
Q ss_pred CCCCCCcccCC----ccHHHHHHHHcccCCCCcEEEEec
Q 025534 185 DPIEGGPCYKL----YTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 185 ~~~~~~p~~~l----~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
......+...+ .....+.. +.+.|+++|+++.-+
T Consensus 124 lDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYISVT 161 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEEEE
Confidence 21111111112 22345666 689999999976544
No 273
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.012 Score=47.58 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCeEEEEecCchHHHHHH-HhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTAREI-LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I 179 (251)
.+++||++|+|--+++-.+ +...+...|..-|-|++.++-.++-...|.. ..-.+..+..-+-..-.. ....+||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEE
Confidence 3588999999976665444 4445567899999999999988875433310 011223222222111111 124589999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
++.-.-.. .-+-....+. ++..|+|.|.-++. +| .+.+.++.+.+-..++
T Consensus 108 laADClFf------dE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 108 LAADCLFF------DEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTV 157 (201)
T ss_pred EeccchhH------HHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhc
Confidence 98532100 0112345555 79999999985554 34 3455666666665555
No 274
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.72 E-value=0.017 Score=50.45 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=56.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 180 (251)
.+++|+++|=-+ ..+..++-..-..+|.+||||+..++...+..... .-.+++.+.-|.++-+.+ ...+||+++
T Consensus 152 ~gK~I~vvGDDD-Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDD-LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCch-hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 468899999433 33332222222379999999999999988876533 235688888898887654 347999999
Q ss_pred EcCCC
Q 025534 181 GDLAD 185 (251)
Q Consensus 181 ~D~~~ 185 (251)
.||+.
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 99875
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.59 E-value=0.13 Score=46.71 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=66.0
Q ss_pred CCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcC-CCceeEE
Q 025534 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESR-KESYDVI 179 (251)
Q Consensus 103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~-~~~fD~I 179 (251)
+.+|+++|+|.=++ +..+++..+..+|+++|.+++=+++|++++.... ..++.-+ |...-+ ..+ +..+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--~~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--VVNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--eecCccc----cHHHHHHHHhCCCCCCEE
Confidence 34899999998554 4667777777899999999999999999654211 0111111 333333 223 3479999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+--.- +...+.. +.+.++++|.+++...
T Consensus 243 ie~~G------------~~~~~~~-ai~~~r~gG~v~~vGv 270 (350)
T COG1063 243 IEAVG------------SPPALDQ-ALEALRPGGTVVVVGV 270 (350)
T ss_pred EECCC------------CHHHHHH-HHHHhcCCCEEEEEec
Confidence 96542 1245666 5789999999987653
No 276
>PRK13699 putative methylase; Provisional
Probab=95.55 E-value=0.036 Score=47.32 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=42.4
Q ss_pred eEEEEcchHHHHhc-CCCceeEEEEcCCCCCC----CC-cc-cC---CccHHHHHHHHcccCCCCcEEEEec
Q 025534 158 LELVINDARAELES-RKESYDVIIGDLADPIE----GG-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 158 v~~~~~D~~~~l~~-~~~~fD~Ii~D~~~~~~----~~-p~-~~---l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+++++|+.+.++. .+++.|+|+.|||.... .+ .. .. -+..+++.+ +.++|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 37899999999876 46899999999985310 01 00 00 122466777 689999999988754
No 277
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.54 E-value=0.0025 Score=53.39 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=63.4
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+.++||||.|+|-++..++.+. .+|.+-|++..|....++. +.+++- ..+|+. ++-+||+|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~c 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLILC 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHHH
Confidence 46899999999999999887654 6899999999999877653 122221 234553 4568999986
Q ss_pred c-CCCCCCCCcccCCccHHHHHHHHcccCCC-CcEEEE
Q 025534 182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT 217 (251)
Q Consensus 182 D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~p-gG~l~~ 217 (251)
- ..|.. ..| -..++. ++.+|+| +|.+++
T Consensus 176 lNlLDRc-~~p------~kLL~D-i~~vl~psngrviv 205 (288)
T KOG3987|consen 176 LNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEE
Confidence 3 23322 133 245677 6888999 887664
No 278
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.51 E-value=0.11 Score=47.41 Aligned_cols=111 Identities=19% Similarity=0.154 Sum_probs=66.4
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc-hHHHHhc--CCCce
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES--RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~l~~--~~~~f 176 (251)
.+..+||++|+|+ |..+..+++..+..+|++++.+++..+.++++... ..+.....| ..+.+.. .++.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3467899999887 77778888876655799999999999999986421 111222221 3333322 22469
Q ss_pred eEEEEcCCCCCCCCcccC---------CccHHHHHHHHcccCCCCcEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYK---------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~---------l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+|+-.........+..+ -.+...+.. +.+.|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 988864321100000000 012345666 578899999988653
No 279
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.49 E-value=0.098 Score=46.93 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=58.3
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++.+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +... -+..-..|..+.... .+.+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK------LVNPQNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE------EecCCcccHHHHhcc-CCCCCEEE
Confidence 467899998742 22445666665655799999999999999874 2110 000011223333332 24599887
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-..- . ...++. ..+.|+++|+++.-.
T Consensus 241 d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSG-----H-------PSSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCC-----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence 4421 1 134455 467899999988654
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.19 Score=45.24 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=81.7
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII 180 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~-~-~fD~Ii 180 (251)
..+++++-+|.|++..-+... +..-+.++|+||..++.-+.+++. ..++..|..++....- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 357999999999998877765 456788999999999999988753 4566778776654322 2 789999
Q ss_pred EcCCCCCC--C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCC-hHHHHHHHHHHHhh
Q 025534 181 GDLADPIE--G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV 241 (251)
Q Consensus 181 ~D~~~~~~--~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~-~~~~~~i~~~l~~~ 241 (251)
--+|.+.. . ++-..| ..++++. -..++| - +++.-+.|+.... ...+..+.+.|.+.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P-~-~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRP-K-FFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCC-C-EEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 98874311 1 221222 3577775 367888 3 3333334433322 34677777777765
No 281
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.27 E-value=0.049 Score=43.92 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=62.9
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCe-EEEEcchHHHHhcCCCceeEEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.++++++|...=-+=..++++ ++.+|..||-++--++ .+ | ..|+ .+...|...-...-.++||.+.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~--------~dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F--------RDRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c--------ccccccccHHHHHHHHHHhhccchhhhe
Confidence 578999999866666666666 5678999998862211 11 1 1233 23334433322334578998876
Q ss_pred cCC-CCCC----CCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~-~~~~----~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-.. ++.. ..|....-...-+.. +++.||+||.+.+-.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence 543 2221 234334445567777 799999999887643
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.26 E-value=0.22 Score=47.65 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhc-cc-CCCCCC-----CeEEEEcchH----HHH
Q 025534 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NK-EAFSDP-----RLELVINDAR----AEL 169 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~-~~~~~~-----rv~~~~~D~~----~~l 169 (251)
.+.+|+++|+|.=++ +...++..+. +|+++|.+++..+.+++.=.. .. +..+.. .++-...|.. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 579999999997664 4556666564 899999999999999984111 00 000000 0111111211 111
Q ss_pred hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+..+.+|+||.-...|. .+...+.+ ++ .-+.+||||+++.-.
T Consensus 243 ~~~~~gaDVVIetag~pg--~~aP~lit----~~-~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPG--KPAPKLIT----AE-MVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCc--ccCcchHH----HH-HHHhcCCCCEEEEEc
Confidence 111246999998775443 11112322 44 456788999887543
No 283
>PHA01634 hypothetical protein
Probab=95.06 E-value=0.078 Score=41.17 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
-..++|+|||.+-|..+.+.+-. ++..|.++|.+|...+..++....+.. -+. ..... +| ...-+.||+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK-~v~~~----eW-~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDK-AVMKG----EW-NGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eec-eeecc----cc-cccCCCcceEE
Confidence 46799999999999999988875 678999999999999999987664421 011 11110 12 12336899888
Q ss_pred EcCC
Q 025534 181 GDLA 184 (251)
Q Consensus 181 ~D~~ 184 (251)
+|--
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 8853
No 284
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.04 E-value=0.076 Score=49.05 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=57.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCC-eEEEEcchHHHHhcCC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELESRK 173 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~~~~~D~~~~l~~~~ 173 (251)
..+.-|.|+.||.|-++.-+++.. ++|++-|++|+++++.+.+.+++. -+|. ++++..||..|+++.+
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Flr~e~ 316 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFLRQEP 316 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHhhcCC
Confidence 456778899999999998888753 799999999999999999998875 3454 9999999999997433
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.94 E-value=0.17 Score=45.33 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=63.4
Q ss_pred CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025534 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fD 177 (251)
..+.+||++|+|.=++ +...++..++.+|.++|+++.-+++|++ |+...- ....+-. ...+.++-+.+. ...+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence 4578999999997554 4555666678899999999999999999 542210 0011111 334445554432 25688
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+.|--.-. . ..++. .-..++.+|++++
T Consensus 245 ~~~dCsG~----~--------~~~~a-ai~a~r~gGt~vl 271 (354)
T KOG0024|consen 245 VTFDCSGA----E--------VTIRA-AIKATRSGGTVVL 271 (354)
T ss_pred eEEEccCc----h--------HHHHH-HHHHhccCCEEEE
Confidence 88855311 1 22444 4568999998654
No 286
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.93 E-value=0.061 Score=47.47 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=109.2
Q ss_pred CCccccceEEeeeccccc---eeeeeccEEEEeecCCCcEEEEEecCceeEEEEcCccccccccchhHHHHHHHhHhhcC
Q 025534 24 TGYRKSCWYEEEIEENLR---WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH 100 (251)
Q Consensus 24 ~~~~~~~w~~~~~~~~~~---~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~l~ldg~~q~~~~~~~~y~e~l~~~~~~~~ 100 (251)
|+..... +.|.+.+..- -++....+|....++++++.|.. +..+.++.++.+.+..+.+ ..|...|+. .
T Consensus 100 te~de~~-Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----g 171 (337)
T KOG1562|consen 100 TERDEFA-YQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-----G 171 (337)
T ss_pred Ccccccc-ceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-----c
Confidence 4444444 4455553222 22344568999999999998888 5578888888776554433 245544431 1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc----hhcccCCCCCCCeEEEEcchHHHHhc---CC
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RK 173 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~~~~~D~~~~l~~---~~ 173 (251)
-..++|..+|+ +|....+.++..+ ..|+.+|+|..+...+..+ |....+.+....+.+.++|..-...+ ..
T Consensus 172 y~~~~v~l~iG-DG~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~ 249 (337)
T KOG1562|consen 172 YEGKKVKLLIG-DGFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG 249 (337)
T ss_pred cCCCceEEEec-cHHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH
Confidence 35678998888 8888888776544 6899999999888877654 34333445667888888886543221 12
Q ss_pred CceeEEEEcCCC-CCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 174 ESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 174 ~~fD~Ii~D~~~-~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
.+||-++.+... ++...|....- +-.|..| .. |+|+|-+.....
T Consensus 250 r~~~~~~f~~t~ya~ttvPTypsg-~igf~l~-s~-~~~~~~~~~p~n 294 (337)
T KOG1562|consen 250 RSFCYVIFDLTAYAITTVPTYPSG-RIGFMLC-SK-LKPDGKYKTPGN 294 (337)
T ss_pred HHhHHHhcCccceeeecCCCCccc-eEEEEEe-cc-cCCCCCccCCCC
Confidence 455555554431 22212211000 0111222 33 899998876543
No 287
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.031 Score=49.70 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=66.2
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhccc-----------------------CC-------
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----------------------EA------- 152 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----------------------~~------- 152 (251)
+-+||+-|||.|.++..++.... .+-+-|.+--|+=.. +|-+|. +.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S--~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICS--SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHH--HHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 56899999999999999998643 455557766554321 111110 00
Q ss_pred ----C----CCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 153 ----F----SDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 153 ----~----~~~rv~~~~~D~~~~l~~~--~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
. ......+..||..+..... .+.||+|+...|-... ... .|+++. +.+.|+|||+.+ |.||.
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa----~Ni--leYi~t-I~~iLk~GGvWi-NlGPL 298 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA----HNI--LEYIDT-IYKILKPGGVWI-NLGPL 298 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech----HHH--HHHHHH-HHHhccCCcEEE-eccce
Confidence 0 0112334557766655432 2579999988652221 112 388898 799999999775 77653
No 288
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.73 E-value=0.045 Score=50.02 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=72.1
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++.+++++|||-|...+++.... .+.+++++.++.-+..+........ .+.+-.++..|..+-. .++..||.+-.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~~ 184 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVRF 184 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEEE
Confidence 34589999999999999998864 4689999999988877766532111 2234444767754432 34678998875
Q ss_pred c-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 182 D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
- ...+ .| .....|++ +.+.++|||.+++.
T Consensus 185 ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence 3 3322 12 13578898 79999999999863
No 289
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.72 E-value=0.093 Score=44.79 Aligned_cols=124 Identities=22% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCeEEEEecCchHHHHHHHhc-----C-CCc---EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH------
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-----K-TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------ 166 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~------ 166 (251)
.-+||.||+...|+.+..|.+. + ..+ .|++||+-+.+ + -+.|.-+++|.-
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 3578999999999876655542 1 111 39999997643 2 245666666642
Q ss_pred HHHhc-CCCceeEEEEcCCCCCCCCcc--cCCccHH----HHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534 167 AELES-RKESYDVIIGDLADPIEGGPC--YKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (251)
Q Consensus 167 ~~l~~-~~~~fD~Ii~D~~~~~~~~p~--~~l~~~e----f~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~ 239 (251)
..++- .+++-|+|++|-.... .+.. ......+ .+.- ...+|+|||.|+... .+.+...-++..|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDv-TGlHd~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql~ 177 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDV-TGLHDLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQLR 177 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCc-cccccHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHHH
Confidence 22222 2479999999965211 1211 0011111 2222 258999999999753 23333456677888
Q ss_pred hhCCceeee
Q 025534 240 QVFKCGYNL 248 (251)
Q Consensus 240 ~~F~~v~~~ 248 (251)
..|..|.-+
T Consensus 178 ~ff~kv~~~ 186 (294)
T KOG1099|consen 178 KFFKKVTCA 186 (294)
T ss_pred HHhhceeee
Confidence 888877654
No 290
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.68 E-value=0.17 Score=44.69 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=75.8
Q ss_pred eEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025534 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~ 183 (251)
+|+++-||.|++..-+.+. +...+.++|+|+..++.-+.+++ .+..+|..+.-... ++..|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 6899999999999888775 45678999999999999988763 67778877654221 11599999988
Q ss_pred CCCC-C-C-------CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHHhh
Q 025534 184 ADPI-E-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV 241 (251)
Q Consensus 184 ~~~~-~-~-------~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~--~~~~~~~i~~~l~~~ 241 (251)
|... + . .+...|+ .++++. + +.++|.-+++=|+ ++... ....+..+++.|.+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV--~~l~~~~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENV--PGLLSSKNGEVFKEILEELEEL 133 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEE--GGGGTGGGHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEeccc--ceeecccccccccccccccccc
Confidence 7422 1 1 1112222 456664 3 5688987766555 22122 225678888888764
No 291
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.66 E-value=0.27 Score=42.47 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~D~ 183 (251)
|..=.|+=.++..+++. ..+.+.+|+-|+-.+..+++|. .+++++++..|+++-+.. +.++==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 56667777888888874 3699999999999999998876 357999999999998764 345677999998
Q ss_pred CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
+.-. +.+.-.-.+.+.. +.++- +.|+++++. | ..+....+.+.+.|++.
T Consensus 134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKAL 182 (245)
T ss_dssp ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH
T ss_pred CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhc
Confidence 6321 1111111233333 23333 478888876 3 34566677788888765
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.067 Score=42.64 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHhHhhcCCC-CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH
Q 025534 89 HESLVHPALLHHPN-PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (251)
Q Consensus 89 ~e~l~~~~~~~~~~-~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~ 167 (251)
.|.+.+.--+...+ ..+.+|||.|+|-+....+++. ...-++||+||-.+..+|-+.--.+ -..+.++...|..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence 45555442222333 3789999999999999888864 5678999999999999887643222 23567777777665
Q ss_pred H
Q 025534 168 E 168 (251)
Q Consensus 168 ~ 168 (251)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 293
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.50 E-value=0.49 Score=43.41 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=54.0
Q ss_pred CCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+.+|+++|+|.= ..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+.. .+.+.-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~-~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAY-EIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHH-HHHHHHccCCEEE
Confidence 4678999999733 33444444445 4799999998877665543321 1111112211 2222124689999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
....-+....| .+.+.+.++ .++|+++++
T Consensus 236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence 86543221123 355665544 357777665
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.40 E-value=0.12 Score=43.00 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=35.1
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (251)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (251)
...++.-|||.-+|+|+++..+.+.. .+..++|++++.+++|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 34567889999999999999988863 689999999999999875
No 295
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.38 E-value=0.15 Score=44.83 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=62.1
Q ss_pred CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-c-----CCCC-------CCCeEEEEcchHHH
Q 025534 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-----EAFS-------DPRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~-----~~~~-------~~rv~~~~~D~~~~ 168 (251)
++|.+||+|. +.++..+++. + .+|+++|.|++.++.++++.... . .... ..+++. ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 5799999984 3455555554 3 47999999999999877643210 0 0000 012232 2333333
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+ +..|+|+...++.. -...+++++ +.+.++|+.++++++.
T Consensus 79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 2 45799998876421 113467777 6788899888877764
No 296
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.26 E-value=0.083 Score=49.07 Aligned_cols=55 Identities=15% Similarity=0.361 Sum_probs=43.5
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~ 162 (251)
.-||+||+|+|.++..+.+. ++..||++|.-..|.++||+-...++ + ..+++++.
T Consensus 68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng--~-SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNG--M-SDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCC--C-ccceeeec
Confidence 35899999999999988886 46789999999999999998765443 2 34666654
No 297
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.12 E-value=0.56 Score=44.85 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCC--------CCCeEEEEcchHH----H
Q 025534 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E 168 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~--------~~rv~~~~~D~~~----~ 168 (251)
++.+||++|+|.=++ +..+++..+ ..|+++|.+++..+.+++. +...-..+ ..-.+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999987654 444555445 4799999999999988873 21100000 0001111112111 1
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
+.+.-+.+|+||.-..-|. .+...|.+.+.. +.+|||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv-----~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMV-----DSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHHH-----hhCCCCCEEE
Confidence 1222357999988765443 232356666643 4577887765
No 298
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.06 E-value=0.046 Score=46.40 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~ 168 (251)
..-|.+||-|.|++++.++.. +.++...||+|+..+.-.+-..+. .+.+..++++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence 456999999999999999985 578999999999998866543332 245889999998765
No 299
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.062 Score=46.54 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=78.7
Q ss_pred CeEEEEecCchHHHHHHHhcC------------CCcEEEEEECChHHHHHHHhc--hhcc----------------c---
Q 025534 104 KTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKSY--LVVN----------------K--- 150 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~a~~~--~~~~----------------~--- 150 (251)
-.|+++|.|+|.....+.+.. ..-+++.+|.+|.....++.+ ++.. +
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 468889999998766555421 123578899887655443321 1100 0
Q ss_pred CCC-CCCCeEEEEcchHHHHhcCCC---ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 151 EAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 151 ~~~-~~~rv~~~~~D~~~~l~~~~~---~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
..+ ..-.+.++++|+.+.+...+. ++|+.+.|.|.|.. +| .+++.+++.. ++++.+|||.++..+
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s 208 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA 208 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence 011 134678899999999876555 79999999998763 55 6899999999 899999999998743
No 300
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.03 E-value=0.077 Score=44.83 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH-Hh-cCCCceeEEE
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII 180 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~-l~-~~~~~fD~Ii 180 (251)
+-++||||+=+...... . .+.-.|+.||+++.- | .+...|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~-~~~fdvt~IDLns~~-----------------~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--T-SGWFDVTRIDLNSQH-----------------P--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc--c-cCceeeEEeecCCCC-----------------C--CceeeccccCCCCCCcccceeEEE
Confidence 36899999975543332 2 233469999998722 2 3445565443 21 2357999999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcE-----EEEecCCCC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQAGPAG 223 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~-----l~~~~~~p~ 223 (251)
+..--.. -| .....-+..+. +.+.|+|+|. +++-...||
T Consensus 110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEeCchH
Confidence 8764211 12 11234578888 6999999999 777665555
No 301
>PRK11524 putative methyltransferase; Provisional
Probab=94.02 E-value=0.16 Score=44.71 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=40.7
Q ss_pred cCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
...++.-|||.-+|+|+++..+.+.. .+..++|++++-++.|++.+.
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 34567889999999999999888863 689999999999999999864
No 302
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.99 E-value=0.45 Score=42.80 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=55.7
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEEC---ChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 177 (251)
.+.+||++|+|+ |.++..+++..+. +|++++. +++-.+.+++. ... .+.....|..+ .. ....+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~-------~v~~~~~~~~~-~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GAT-------YVNSSKTPVAE-VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCE-------EecCCccchhh-hh-hcCCCC
Confidence 568999998754 3355667776654 7999986 67788888764 211 01000112111 11 235699
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+|+--.. . ...+.. ..+.|+++|.+++..
T Consensus 241 ~vid~~g-----~-------~~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATG-----V-------PPLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcC-----C-------HHHHHH-HHHHccCCcEEEEEe
Confidence 8885432 1 134555 568899999887643
No 303
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.96 E-value=0.67 Score=40.06 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=84.5
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~D~ 183 (251)
|..=+|+=-+++.+++. ..++...|+-|.=....+++|. .+.++++..+|++.-+.. ++++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 77788888899999884 3689999999999999999887 357999999999988765 246788999998
Q ss_pred CCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhh
Q 025534 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (251)
Q Consensus 184 ~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (251)
|.... + +.-...+.+++ ..++. ++|+++++. | ....+..+++++.|++.
T Consensus 165 PfE~~-~--eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 165 PFELK-D--EYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEAL 213 (279)
T ss_pred Ccccc-c--HHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhc
Confidence 74221 0 11111233343 23333 478888875 3 34567788888888865
No 304
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.87 E-value=0.19 Score=42.84 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=52.7
Q ss_pred hhHHHHHHHhHhhcCCCCCeEEEEecCchHHHH--HHHhcCCCcEEEEE--ECChHHHHHHHhchhcccCCCCCCCeEEE
Q 025534 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (251)
Q Consensus 86 ~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~~~ 161 (251)
..|.+..-.+|.....+.++||++|+|.=+.-+ .|++. + ++||+| |+++++.++++. ++++++
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~-g-A~VtVVap~i~~el~~l~~~-----------~~i~~~ 74 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK-G-CYVYILSKKFSKEFLDLKKY-----------GNLKLI 74 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence 355555555676666778999999999777643 34443 3 577777 888888776542 356666
Q ss_pred EcchHHHHhcCCCceeEEEEcCCC
Q 025534 162 INDARAELESRKESYDVIIGDLAD 185 (251)
Q Consensus 162 ~~D~~~~l~~~~~~fD~Ii~D~~~ 185 (251)
..+...-- -+.+++|+....+
T Consensus 75 ~r~~~~~d---l~g~~LViaATdD 95 (223)
T PRK05562 75 KGNYDKEF---IKDKHLIVIATDD 95 (223)
T ss_pred eCCCChHH---hCCCcEEEECCCC
Confidence 65432211 1457777776443
No 305
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.85 E-value=0.19 Score=45.08 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=74.1
Q ss_pred EEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~ 185 (251)
|+++.||.|++..-+.+. +..-+.++|+|+..++..+.+++ . .++.+|..+.-...-...|+++..+|.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG---------N-KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 689999999998887664 45567789999999999988764 1 445678777543222468999998873
Q ss_pred CC-C-CC-------cccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--CChHHHHHHHHHHHhh
Q 025534 186 PI-E-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV 241 (251)
Q Consensus 186 ~~-~-~~-------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~~~~~~~~i~~~l~~~ 241 (251)
.. . .+ +...| -.++++. + +.++|.=+++=|+ |... .....+..+++.|+..
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~ 131 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL 131 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence 21 1 11 11112 2355554 3 5678874444333 2211 1234567777777653
No 306
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.78 E-value=0.43 Score=43.29 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=58.3
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
...+||+.|+|. |.++..+++..+..+|++++.+++-.+.+++. ... .-+.....|..+.+.. .++.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 457899998643 23455666766655799999999999998764 211 0011111233333332 23469988
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+-... .+ +.++. ..+.|+++|.++...
T Consensus 264 id~~G-----~~-------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAG-----SV-------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EECCC-----Ch-------HHHHH-HHHHHhcCCEEEEEc
Confidence 85431 11 33455 467899999887643
No 307
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.62 E-value=0.045 Score=49.29 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHH-------hchhcccCCCCCCCeEEEEcchHHHHhcC
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK-------SYLVVNKEAFSDPRLELVINDARAELESR 172 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-------~~~~~~~~~~~~~rv~~~~~D~~~~l~~~ 172 (251)
..++.=|+|--.|||++....++. + +.|.+-|||-.+++..| .+|+.-+. .+--+.+..+|.-+-.-..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh
Confidence 345677999999999998887764 5 68999999999998432 34443321 2234577888865432223
Q ss_pred CCceeEEEEcCCC
Q 025534 173 KESYDVIIGDLAD 185 (251)
Q Consensus 173 ~~~fD~Ii~D~~~ 185 (251)
...||.|++|||.
T Consensus 282 n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 282 NLKFDAIVCDPPY 294 (421)
T ss_pred cceeeEEEeCCCc
Confidence 5789999999984
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.59 E-value=0.52 Score=42.49 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD 177 (251)
.++.+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.. . +..+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3468999998643 23455666766655699999999999988764 21 11111112344444433 2 24689
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+|+ |... .+ +.++. ..+.|+++|++++-.
T Consensus 248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 887 4321 11 33455 467899999988643
No 309
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.37 E-value=0.77 Score=40.73 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=52.1
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+|.+||+|.-+ ++..+.+.....+|+++|.+++..+.+++. .. ... ...+..+.+ +..|+|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 689999998633 445555432224899999999988777653 10 011 122333333 35799998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
..+... ..++++. +...++++.+++
T Consensus 73 avp~~~---------~~~v~~~-l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA---------SGAVAAE-IAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH---------HHHHHHH-HHhhCCCCCEEE
Confidence 865321 2345555 456677766543
No 310
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.15 Score=46.11 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=63.4
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHH---hchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCK---SYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~---~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 177 (251)
.|+++||+|.|.|..+..+-.- +...+++.+|.+|.+-++.. ++..... .+-|..=+..|- .-+. ..+.|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~dR-l~lp-~ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTEDR-LSLP-AADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchhc-cCCC-ccceee
Confidence 5789999999999877665553 55578999999997765543 3322111 111222222331 1111 236788
Q ss_pred EEEEc-CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec-CCC
Q 025534 178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPA 222 (251)
Q Consensus 178 ~Ii~D-~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~-~~p 222 (251)
+|++- -.-|. +....++ ..++. +...++|||.+++-. |.|
T Consensus 188 l~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEEeCCCc
Confidence 77753 22222 1111222 36777 789999999887643 444
No 311
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.14 E-value=0.73 Score=36.74 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=60.0
Q ss_pred eEEEEecCchHHHH--HHHhcCCCcEEEEEECChHHHHHHHhchh---cccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 105 TIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 105 ~VL~iG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
+|.+||+|.++.+. .++.. + .+|+....+++.++..++.-. ...+....+++++ ..|..+.+ +.-|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----CcccEE
Confidence 58899999998654 33443 3 589999999988887765321 1110001234544 57776666 357999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
++-.|. ..-++++++ ++..|+++-.++.
T Consensus 74 iiavPs---------~~~~~~~~~-l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 74 IIAVPS---------QAHREVLEQ-LAPYLKKGQIIIS 101 (157)
T ss_dssp EE-S-G---------GGHHHHHHH-HTTTSHTT-EEEE
T ss_pred EecccH---------HHHHHHHHH-HhhccCCCCEEEE
Confidence 988652 223688998 7999976666654
No 312
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.00 E-value=0.92 Score=40.60 Aligned_cols=98 Identities=20% Similarity=0.321 Sum_probs=64.9
Q ss_pred CCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+.+|.+||+|.-+ -+..++--- .+.|+.+|+|..=++.....|. .|++.......++-. .-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee-~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEE-AVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHH-HhhhccEEE
Confidence 46789999887533 333333323 3699999999887776665542 478888887766543 346899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
....-|....| .|.+++. .+.++||++++
T Consensus 237 gaVLIpgakaP--kLvt~e~-----vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKAP--KLVTREM-----VKQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCCc--eehhHHH-----HHhcCCCcEEE
Confidence 87654443334 4665553 45688998876
No 313
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.96 E-value=1.7 Score=40.40 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=58.6
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----------
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----------- 170 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~----------- 170 (251)
++|.+||+|--+ ++..+++. + -+|+++|+|++.++..++-. +.+...+..+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G-~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-Q-KQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 579999998554 34455554 3 58999999999988654321 0111111111111
Q ss_pred cCCCceeEEEEcCCCCCCCCcccCC-ccHHHHHHHHcccCCCCcEEEEecC
Q 025534 171 SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 171 ~~~~~fD~Ii~D~~~~~~~~p~~~l-~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
...+..|+|++..+.|........+ .-.+..+. +.+.|++|-+++..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 0113579999988765321111111 22345566 6788998877777664
No 314
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.71 Score=40.92 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=58.0
Q ss_pred CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCC--------CCeEEEEcchHHHHhcCC
Q 025534 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK 173 (251)
Q Consensus 104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~~~~~D~~~~l~~~~ 173 (251)
++|.+||+|.- .++..+++. + .+|+++|.+++.++.+++........... .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 68999999843 455666554 3 48999999999998877642110000000 11222 23433333
Q ss_pred CceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+..|+|+...+... -...+++.. +...++++-+++.++
T Consensus 78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT 115 (311)
T ss_pred ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence 45799998865321 112456777 566676666655554
No 315
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.78 E-value=0.56 Score=41.48 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+.++||++|+|+ |.++.++++..+...|.++|.+++-++.++++.-.+ +. + .....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~------~~---------~---~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD------PE---------K---DPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC------hh---------h---ccCCCCCEEE
Confidence 467899998653 335566777666656888899888777666431111 10 0 0134689888
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
-..- . ...++. +.+.|+++|++++-
T Consensus 206 d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 206 DASG-----D-------PSLIDT-LVRRLAKGGEIVLA 230 (308)
T ss_pred ECCC-----C-------HHHHHH-HHHhhhcCcEEEEE
Confidence 4321 1 133455 46789999998854
No 316
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.69 E-value=0.36 Score=42.26 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----ccCC-CC-------CCCeEEEEcchHHH
Q 025534 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEA-FS-------DPRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~~~-~~-------~~rv~~~~~D~~~~ 168 (251)
++|.+||+| ++.++..+++. + .+|+++|++++.++.+++.+.. .... .. ..++++ ..|.. -
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-D 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-H
Confidence 479999998 45566777665 3 4899999999999765533210 0000 00 013332 23422 1
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ +..|+|+...+... ....++++. +.+.++|+.+++.++.+
T Consensus 80 ~----~~aDlVi~av~e~~-------~~k~~~~~~-l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L----KDADLVIEAATENM-------DLKKKIFAQ-LDEIAKPEAILATNTSS 120 (282)
T ss_pred h----ccCCeeeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 2 45799998865321 123578888 78889999888766643
No 317
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.66 E-value=2.8 Score=35.50 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCeEEEEecCchH----HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-HHHhcCCCc
Q 025534 101 PNPKTIFIMGGGEGS----TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKES 175 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-~~l~~~~~~ 175 (251)
-+.+-+++..+++|. ++..++.+....++++|-.+++-....++.+...+ ..+.++|+.+|.. +.+.. -+.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~-~~~ 115 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPG-LKG 115 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhh-ccC
Confidence 355778888665442 33433433344689999999888877777765322 2245799999854 45543 367
Q ss_pred eeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 176 fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
.|++++|.-. .-+..++++. + .+.|.|.+++
T Consensus 116 iDF~vVDc~~--------~d~~~~vl~~-~--~~~~~GaVVV 146 (218)
T PF07279_consen 116 IDFVVVDCKR--------EDFAARVLRA-A--KLSPRGAVVV 146 (218)
T ss_pred CCEEEEeCCc--------hhHHHHHHHH-h--ccCCCceEEE
Confidence 9999999531 1122355554 2 2767776555
No 318
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.61 E-value=0.34 Score=38.58 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=54.1
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD 177 (251)
.-+.-||++|.|.|-+-.++....+..+|.+.|-. .+.|-.. ..|.-+++.+|+++.+.. .+.+--
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~------l~~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~~a~ 95 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA------LACHPSS-----TPPEEDLILGDIRETLPALARFGAGAA 95 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee------cccCCCC-----CCchHheeeccHHHHhHHHHhcCCceE
Confidence 34578999999999998888887667899999873 2222111 234567999999998865 234444
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
++=.|.-.. .+.....+...+.-.+..+|+|||+++-
T Consensus 96 laHaD~G~g---~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 96 LAHADIGTG---DKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEeecCCC---CcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 555554322 1111122223333335799999998873
No 319
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.50 E-value=0.48 Score=42.92 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=25.1
Q ss_pred CCCeEEEEecCch-H-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
..++||++|||+- + ++..|++ .++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 4678999999853 2 4455555 4678999999985
No 320
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.49 E-value=0.15 Score=41.38 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=63.3
Q ss_pred EEEecCchHHHHHHHhcCC-CcEEEEE--ECChHHHHHHH---hchhcccCCCCCCCeEEE-EcchHHHHhc---CCCce
Q 025534 107 FIMGGGEGSTAREILRHKT-VEKVVMC--DIDEEVVEFCK---SYLVVNKEAFSDPRLELV-INDARAELES---RKESY 176 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~-~~~v~~V--Eid~~vi~~a~---~~~~~~~~~~~~~rv~~~-~~D~~~~l~~---~~~~f 176 (251)
|.+|=|.-+++..|+++.+ ...+++- |...++.+... +++.. +....++++ --|+.+.-.. ...+|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~----L~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE----LRELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH----HhhcCCccccCCCCCcccccccccCCcC
Confidence 5788899999999988644 4566554 44444444322 22221 123444443 3455443222 34789
Q ss_pred eEEEEcCCCCCCC---Cc----ccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 177 DVIIGDLADPIEG---GP----CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~---~p----~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|.|+-+-|+.... +. ...-.-..||+. ++++|+++|.+.+-.
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVTL 125 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 9999998854310 00 011223689999 799999999776543
No 321
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.35 E-value=1.6 Score=35.29 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
....+|+.|||=+-.....-. ..+..++...|+|.+.-....+.|-.-+ ++.| .+.......+||+|+
T Consensus 24 ~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence 355899999997665544331 2234689999999877654433111100 0111 111111246999999
Q ss_pred EcCCCCCCCCcccCCccHHHH----HHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFY----EFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~----~~~~~~~L~pgG~l~~~~ 219 (251)
+|||- .+.+.. +. ++..+++++.++.-+
T Consensus 92 ~DPPF----------l~~ec~~k~a~t-i~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPF----------LSEECLTKTAET-IRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCC----------CCHHHHHHHHHH-HHHHhCccceEEEec
Confidence 99863 122332 44 566778888887643
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.34 E-value=1.1 Score=39.90 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=58.0
Q ss_pred CeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025534 104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (251)
Q Consensus 104 ~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 180 (251)
.+||+.|+ |.|..+.++++..+..+|++++.+++-.+.+++.++.. .-+.....|..+.+.. .++.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 78999986 45556777888766447999999988888777643321 1111112333444432 235699988
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|... + ..+.. ..+.|+++|.++..
T Consensus 230 -d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----G--------EISDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----c--------HHHHH-HHHHhccCCEEEEE
Confidence 4321 1 11344 46789999998753
No 323
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.04 E-value=0.59 Score=39.04 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (251)
...+||++|+|+ |+ ++..|++ .++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence 567899999985 33 4555555 467899999988
No 324
>PRK13699 putative methylase; Provisional
Probab=92.00 E-value=0.53 Score=40.18 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=39.4
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
..++.-|||.-||+|+++..+.+.. .+..++|++++..+.+.+.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 3466789999999999999888763 589999999999999988764
No 325
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.94 E-value=0.43 Score=36.17 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=60.0
Q ss_pred CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CC-CceeEEEEcCCCCCCC
Q 025534 112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYDVIIGDLADPIEG 189 (251)
Q Consensus 112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD~Ii~D~~~~~~~ 189 (251)
|-|..+..++++.+ .+|++++.++.-.+.++++-... -+.....|..+.++. .+ +.+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 45788888898877 89999999999999999863110 011111224445544 23 47999996542
Q ss_pred CcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 190 ~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
..+.++. ..+.|+++|++++-...
T Consensus 68 -------~~~~~~~-~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -------SGDTLQE-AIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -------SHHHHHH-HHHHEEEEEEEEEESST
T ss_pred -------cHHHHHH-HHHHhccCCEEEEEEcc
Confidence 1245666 57899999999876543
No 326
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.88 E-value=0.94 Score=37.11 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=58.8
Q ss_pred eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHHH
Q 025534 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL 169 (251)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~l 169 (251)
+|.+||+|.=+ ++..++.. + .+|+.+|.|++.++.+++++... ...+. -.++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 58899998755 34444554 3 69999999999999888765420 01011 123332 233221
Q ss_pred hcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
. ...|+|+-..++.. -..+++|++ +.+.+.|+-+|+.|+.
T Consensus 76 --~-~~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 76 --A-VDADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS 115 (180)
T ss_dssp --G-CTESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred --H-hhhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence 2 26899998765421 124688999 8999999999998874
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.85 E-value=2 Score=36.16 Aligned_cols=99 Identities=22% Similarity=0.336 Sum_probs=60.1
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-hcCCCceeE
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l-~~~~~~fD~ 178 (251)
.++.+||+.|+|+ |..+..+++..+ .+|++++.+++-.+.+++.... .-+.....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4568999999986 555666666655 6899999999888887654210 00111111211111 123467999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
|+..... + ..+.. +.+.|+++|.++....
T Consensus 205 vi~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVGG-----P-------ETLAQ-ALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCCC-----H-------HHHHH-HHHhcccCCEEEEEcc
Confidence 9865321 0 23455 5678899999886543
No 328
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.82 E-value=3.4 Score=35.83 Aligned_cols=126 Identities=20% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCCeEEEEecCchHHHHH---HHhcC--CCcEEEEEECCh--------------------------HHHHHHHhchhcc
Q 025534 101 PNPKTIFIMGGGEGSTARE---ILRHK--TVEKVVMCDIDE--------------------------EVVEFCKSYLVVN 149 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~---l~~~~--~~~~v~~VEid~--------------------------~vi~~a~~~~~~~ 149 (251)
.-|..|+++|+--|+.+.. +++.. ...++.+.|.=+ .-.+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3478999999988876543 33321 235677777422 1234444554322
Q ss_pred cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCCh
Q 025534 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT 228 (251)
Q Consensus 150 ~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~ 228 (251)
+ +.+++++++.|+..+-+... .+++-++-+|.-- ..| |.+.++. +..+|.|||++++.- +..
T Consensus 153 g--l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Yes-----T~~aLe~-lyprl~~GGiIi~DD-----Y~~- 215 (248)
T PF05711_consen 153 G--LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YES-----TKDALEF-LYPRLSPGGIIIFDD-----YGH- 215 (248)
T ss_dssp T--TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHH-----HHHHHHH-HGGGEEEEEEEEESS-----TTT-
T ss_pred C--CCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHH-----HHHHHHH-HHhhcCCCeEEEEeC-----CCC-
Confidence 1 24579999999999888653 4677777777421 012 5678888 799999999999864 333
Q ss_pred HHHHHHHHHHHhhCC
Q 025534 229 EVFSCIYNTLRQVFK 243 (251)
Q Consensus 229 ~~~~~i~~~l~~~F~ 243 (251)
+.-++...-+++...
T Consensus 216 ~gcr~AvdeF~~~~g 230 (248)
T PF05711_consen 216 PGCRKAVDEFRAEHG 230 (248)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcC
Confidence 333444444554443
No 329
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.81 E-value=0.64 Score=38.34 Aligned_cols=126 Identities=23% Similarity=0.261 Sum_probs=63.3
Q ss_pred eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCC--------CCCCCeEEEEcchHHHHhcCC
Q 025534 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESRK 173 (251)
Q Consensus 105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~--------~~~~rv~~~~~D~~~~l~~~~ 173 (251)
+|-++|+|==++ +..+++. + -+|+++|+|++.++..++-. +..... ....|+++. .|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-G-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-T-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhC-C-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 688898885543 3444443 3 59999999999999877532 221100 012233332 4444433
Q ss_pred CceeEEEEcCCCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHH
Q 025534 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~ 239 (251)
...|++++..+.|... +....-+-....+. +.+.|+++-++++.+..|- -...+.++.+++...
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvpp-Gtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVPP-GTTEELLKPILEKRS 139 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSST-THHHHHHHHHHHHHC
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEEE-eeehHhhhhhhhhhc
Confidence 3589888887644311 11122223456677 6889999888888775431 112224445554433
No 330
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.76 E-value=0.76 Score=41.93 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|||+ |+ ++..|++ .++.+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~-~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG-AGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 457999999985 33 3455554 5788999999886
No 331
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.69 E-value=1.4 Score=32.77 Aligned_cols=92 Identities=26% Similarity=0.279 Sum_probs=56.3
Q ss_pred EEEEecCchHHHHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeEEE
Q 025534 106 IFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDVII 180 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~Ii 180 (251)
|+++|+|. +++.+++. .....|+++|.|++.++.+++. .+.++.+|+.+. +++.+ ++.|.|+
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 56777764 44443331 1225899999999999988863 267888998754 44332 6899998
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+...+.. . +..... ..+.+.|...+++...
T Consensus 68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARVN 97 (116)
T ss_dssp EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEES
T ss_pred EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEEC
Confidence 8764321 0 112222 2456788888887653
No 332
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.50 E-value=0.94 Score=40.78 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-----cCCC----CCCCeEEEEcchHHHHhc
Q 025534 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES 171 (251)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~----~~~rv~~~~~D~~~~l~~ 171 (251)
-++|-+||+| +.+++..++.. + .+|+.+|.+++.++.+++.+... .... ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999998 44455666654 3 58999999999887766543210 0000 01244433 2433332
Q ss_pred CCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 172 ~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
..-|+|+-..++.. -...++|++ +.+.++|+.+|..|+.
T Consensus 82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45799998876422 123577888 7888999888877764
No 333
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.44 E-value=0.48 Score=40.65 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=51.5
Q ss_pred CCCeEEEEecCchHHHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc-chHHHH---hcCCCce
Q 025534 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAEL---ESRKESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~-D~~~~l---~~~~~~f 176 (251)
+.-++||||.|.-.+--.+--+ .+ -+.++-|+|+..++.|+.....|.. ....+++... |-...+ ....++|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~--l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPG--LERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcc--hhhheeEEeccCcccccccccccccee
Confidence 3457899998876654333332 23 5899999999999999988765421 1123444332 211111 1235899
Q ss_pred eEEEEcCCCC
Q 025534 177 DVIIGDLADP 186 (251)
Q Consensus 177 D~Ii~D~~~~ 186 (251)
|+.+|++|.+
T Consensus 155 d~tlCNPPFh 164 (292)
T COG3129 155 DATLCNPPFH 164 (292)
T ss_pred eeEecCCCcc
Confidence 9999999854
No 334
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.41 E-value=1.8 Score=38.63 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD 177 (251)
.++++||+.|+|. |..+.++++..+...+++++.+++-.+.++++ +.. .-+.....+..+.+.+ ....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence 4568999997642 23445666666655799999999888888864 211 1111111232222322 235699
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+.... + .+.+.. +.++|+++|+++..
T Consensus 238 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence 8885322 1 134556 57789999988743
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.37 E-value=2 Score=37.24 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=55.9
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~ 178 (251)
+..+||++|+|+ |.++..+++..+..+|++++.+++-.+.++++-. .. .-++ .+..+.+.. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~~--~i~~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA-TA--LAEP------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-cE--ecCc------hhhHHHHHHHhCCCCCCE
Confidence 467899998753 2234556666565569999999998888887421 00 0011 111122221 2346999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+--.- . ...++. +.+.|+++|.++...
T Consensus 191 vid~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSG-----A-------TAAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCC-----C-------hHHHHH-HHHHhcCCCEEEEec
Confidence 875321 1 133455 467899999988644
No 336
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.36 E-value=0.82 Score=38.56 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=25.0
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (251)
...+|+++|+|+ |+ ++..|++ .+..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 467899999985 33 4555555 467899999999
No 337
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.24 E-value=1.5 Score=38.47 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=59.5
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-cCCCceeE
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~ 178 (251)
....+||+.|+|. |..+.++++..+ .+|++++.+++..+.++++ ... .-+.....+..+.++ ...+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 3467899987653 566677777655 5799999999998888763 211 001111112222222 23467998
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+.... . .+.++. +.+.|+++|.++...
T Consensus 236 vid~~g------~------~~~~~~-~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVG------T------QPTFED-AQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCC------C------HHHHHH-HHHHhhcCCEEEEEC
Confidence 875421 1 234566 578999999988643
No 338
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.13 E-value=1.9 Score=37.88 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=61.4
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC--------CCCeEEEEcchHH
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS--------DPRLELVINDARA 167 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~--------~~rv~~~~~D~~~ 167 (251)
++|.+||+|.-+ ++..+++. + .+|+.+|.+++.++.+++..... ...+. ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-G-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 579999998544 44445543 3 48999999999988877543100 00000 023332 344433
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
.+ +.-|+||...+... -...+++++ +.+.++++-+++.++.
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence 33 45799998876321 123467777 6778888877766653
No 339
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.10 E-value=0.94 Score=39.94 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=55.0
Q ss_pred CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.+|+++|+|. |.+++.+.+......|++.|.+....+.+.+. ... +. . ..+ .........|+||+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~---~-~~~---~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DE---L-TVA---GLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----cc---c-ccc---hhhhhcccCCEEEE
Confidence 5789999873 45666666654445688888888877776643 111 00 0 011 11112356899999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
..|-. .+.+++++ +...|++|.+++
T Consensus 71 avPi~---------~~~~~l~~-l~~~l~~g~iv~ 95 (279)
T COG0287 71 AVPIE---------ATEEVLKE-LAPHLKKGAIVT 95 (279)
T ss_pred eccHH---------HHHHHHHH-hcccCCCCCEEE
Confidence 86521 24677888 677888877665
No 340
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.10 E-value=1.2 Score=36.23 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=23.3
Q ss_pred eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
+|+++|+|+ |+ ++..+++ .+..+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999984 43 4555555 4678999999986
No 341
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.08 E-value=2.7 Score=37.24 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD 177 (251)
..+.+||++|+|+=+ .+.++++..+..+|++++.+++-.+.+++. ... .-+.....+ .+-+.+ . ...+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence 346899999764222 345566665654499999999988888764 211 001111122 222221 2 34799
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+|+-.... ...+.. ..+.|+++|.+++..
T Consensus 234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence 98854321 123344 457899999988643
No 342
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.05 E-value=1.4 Score=38.72 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=59.5
Q ss_pred CeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc--------c-cCCCC-------CCCeEEEEcch
Q 025534 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFS-------DPRLELVINDA 165 (251)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--------~-~~~~~-------~~rv~~~~~D~ 165 (251)
++|.+||+|. +.++..+++. + .+|+++|.+++.++.+++.... . ..... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 6899999994 3455666654 3 4899999999999876543211 0 00000 0122221 232
Q ss_pred HHHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 166 ~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+-+ +..|+|+...+... -...+++++ +.+.++|+.+++.++
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 222 35799998875321 113577888 688888888777554
No 343
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.98 E-value=1.1 Score=37.70 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=45.3
Q ss_pred HhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc
Q 025534 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (251)
Q Consensus 96 ~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~ 171 (251)
|+......++||++|+|.=+. ++.+++. + ++|++|+.+ ++..+++++ .+++++.++.....
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~-g-a~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d-- 66 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKA-G-AQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI-- 66 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH--
Confidence 333445678999999986554 3455553 3 689988654 444444332 36777776643221
Q ss_pred CCCceeEEEEcCCC
Q 025534 172 RKESYDVIIGDLAD 185 (251)
Q Consensus 172 ~~~~fD~Ii~D~~~ 185 (251)
-..+|+|+..+.+
T Consensus 67 -l~~~~lVi~at~d 79 (205)
T TIGR01470 67 -LEGAFLVIAATDD 79 (205)
T ss_pred -hCCcEEEEECCCC
Confidence 1468999887554
No 344
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.89 E-value=3.2 Score=38.90 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
.+++|+++|+|.=+.. ...++..+ .+|+++|+|+.-...+... + .++. +..+.+ +..|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEEE
Confidence 6789999999864432 22334345 4899999998665444331 1 1211 223333 3689998
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
... +. ...+.....+.+|+|++++ |.++.
T Consensus 273 ~aT------G~------~~vI~~~~~~~mK~Gaili-NvG~~ 301 (425)
T PRK05476 273 TAT------GN------KDVITAEHMEAMKDGAILA-NIGHF 301 (425)
T ss_pred ECC------CC------HHHHHHHHHhcCCCCCEEE-EcCCC
Confidence 642 11 1223311356788888765 66554
No 345
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.81 E-value=1.3 Score=39.02 Aligned_cols=101 Identities=12% Similarity=0.297 Sum_probs=63.6
Q ss_pred CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCCC-------CCeEEEEcchHHH
Q 025534 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~~~~~D~~~~ 168 (251)
++|-+||+| ++.++..+++. + .+|+.+|.+++.++.+++.+... ...... .+++ ...|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-G-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH
Confidence 589999999 44566666665 4 58999999999999876553210 000000 1232 22443 22
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccC-CCCcEEEEecC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG 220 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L-~pgG~l~~~~~ 220 (251)
+ ...|+|+-..++.. -...++|.. +.+.+ +|+.+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 45799998876422 123567787 67777 78888887764
No 346
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=90.76 E-value=0.87 Score=40.43 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=44.2
Q ss_pred EEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE----EEcchHHHHh--c--CCC
Q 025534 106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAELE--S--RKE 174 (251)
Q Consensus 106 VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~----~~~D~~~~l~--~--~~~ 174 (251)
||+-|+| |+++.++.++ .+..++..+|.|+.-+-..++.+.... .++++++ +.+|.++.-+ . ...
T Consensus 1 VLVTGa~-GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAG-GSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTT-SHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccc-cHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 5666664 7777666552 234799999999999888887764211 2345654 5889877532 2 234
Q ss_pred ceeEEEEcCC
Q 025534 175 SYDVIIGDLA 184 (251)
Q Consensus 175 ~fD~Ii~D~~ 184 (251)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999876
No 347
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.71 E-value=2.4 Score=39.50 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=54.4
Q ss_pred CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..+++|+++|+|.=+. ...+++..+ .+|+++|.|+.-.+.|++. + .+.. +..+.+ ...|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v----~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-G----------YEVM--TMEEAV----KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH----cCCCEE
Confidence 3578999999997543 333445455 4899999999888877763 1 1111 112333 357999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+.... . ...+.....+.+++||+++ +.+.
T Consensus 262 I~atG-----~-------~~~i~~~~l~~mk~Ggilv-nvG~ 290 (413)
T cd00401 262 VTTTG-----N-------KDIITGEHFEQMKDGAIVC-NIGH 290 (413)
T ss_pred EECCC-----C-------HHHHHHHHHhcCCCCcEEE-EeCC
Confidence 86421 1 1233331357899999876 4443
No 348
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.66 E-value=1.2 Score=40.37 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=25.1
Q ss_pred CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|||+-+ ++..|++ .++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 46789999998533 4455555 4678999999983
No 349
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.60 E-value=2.1 Score=37.84 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+..+||+.|+|+ |..+..+++..+..++++++.+++..+.+++. ... .-+.....+..... .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~------~vi~~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD------ETVNLARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC------EEEcCCchhhhhhh-ccCCCccEEE
Confidence 568899988765 45666677765544799999999988877764 211 00000001112222 1224599988
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.... . ...++. +.+.|+++|+++..
T Consensus 237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence 6432 1 123556 57889999998854
No 350
>PRK10458 DNA cytosine methylase; Provisional
Probab=90.57 E-value=1.2 Score=42.19 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=77.2
Q ss_pred CCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH-------------
Q 025534 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------------- 169 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l------------- 169 (251)
.-+++++-||.|++..-+-.. +...|.++|+|+.+.+.-+.++.. +|....+.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 458999999999999887665 456788999999999998887631 233344445554431
Q ss_pred ---hcCCCceeEEEEcCCCC-CC-CCc----------------ccCCccHHHHHHHHcccCCCCcEEEEecCCCCCC--C
Q 025534 170 ---ESRKESYDVIIGDLADP-IE-GGP----------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S 226 (251)
Q Consensus 170 ---~~~~~~fD~Ii~D~~~~-~~-~~p----------------~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~--~ 226 (251)
...-...|+++.-+|.+ +. .+. ...| -.++++. + +.++|.-+++=|+ ++.. .
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~L-f~~~~ri-i-~~~kPk~fvlENV--~gl~s~~ 235 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTL-FFDVARI-I-DAKRPAIFVLENV--KNLKSHD 235 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccH-HHHHHHH-H-HHhCCCEEEEeCc--Hhhhccc
Confidence 11123689999887742 21 110 0011 1455554 3 4678876555443 2222 2
Q ss_pred ChHHHHHHHHHHHhh
Q 025534 227 HTEVFSCIYNTLRQV 241 (251)
Q Consensus 227 ~~~~~~~i~~~l~~~ 241 (251)
....+..+++.|.+.
T Consensus 236 ~g~~f~~i~~~L~~l 250 (467)
T PRK10458 236 KGKTFRIIMQTLDEL 250 (467)
T ss_pred ccHHHHHHHHHHHHc
Confidence 234677888888765
No 351
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.47 E-value=7.8 Score=36.10 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..+++|+++|+|.=+.. ...++..+ .+|+++|.||.-...++.. ..++. +..+.+ ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-----------G~~v~--~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-----------GFRVM--TMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-----------CCEeC--CHHHHH----hcCCEE
Confidence 46789999999875433 33444444 5899999999654444321 11111 222333 357998
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCCceee
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGYN 247 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (251)
|.... . ...+.......+|+|++++ |.+.....-+.+.+.+....-+.+-+++.-
T Consensus 255 ItaTG-----~-------~~vI~~~~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~ 309 (406)
T TIGR00936 255 ITATG-----N-------KDVIRGEHFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDE 309 (406)
T ss_pred EECCC-----C-------HHHHHHHHHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEE
Confidence 76421 1 1222211346788888765 665432212333343333332334444433
No 352
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.39 E-value=5 Score=32.56 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCchHHHHHHHh---cCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025534 101 PNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~---~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 177 (251)
..+++|.+||+|. +++.+++ -.+ .+|.++|.++......... .+ ...+..+.++ +.|
T Consensus 34 l~g~tvgIiG~G~--IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aD 93 (178)
T PF02826_consen 34 LRGKTVGIIGYGR--IGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QAD 93 (178)
T ss_dssp STTSEEEEESTSH--HHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-S
T ss_pred cCCCEEEEEEEcC--CcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhh
Confidence 3578999999964 4443333 345 5999999999876622221 11 2235556653 589
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|++..+... ...++.+.++|+. +|+|. +++|.+
T Consensus 94 iv~~~~plt~---~T~~li~~~~l~~-----mk~ga-~lvN~a 127 (178)
T PF02826_consen 94 IVSLHLPLTP---ETRGLINAEFLAK-----MKPGA-VLVNVA 127 (178)
T ss_dssp EEEE-SSSST---TTTTSBSHHHHHT-----STTTE-EEEESS
T ss_pred hhhhhhcccc---ccceeeeeeeeec-----cccce-EEEecc
Confidence 9999877321 1246778887765 56655 556874
No 353
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.36 E-value=4 Score=38.79 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=62.0
Q ss_pred CeEEEEecCchHHHHH--HHhcCCCcEEEEEECChHHHHHHHhchh-cccCCCC-------CCCeEEEEcchHHHHhcCC
Q 025534 104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK 173 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-------~~rv~~~~~D~~~~l~~~~ 173 (251)
.+|.++|+|-.++... +++.....+|+++|+|++.++..++-.. .....+. ..+++ ...|..+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i---- 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV---- 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----
Confidence 3689999988776543 4443222579999999999998876421 1110000 00111 112221112
Q ss_pred CceeEEEEcCCCCCCC-C-----cccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~-~-----p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
..-|+||+..+-|... + ....-+-.+..+. +.++|++|-++++.+..|
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp 130 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP 130 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence 3578888866534310 1 1111123456666 678898877777776544
No 354
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.18 E-value=0.38 Score=40.18 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=64.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcC-CCcEEEEEECChHHHHHHHhchh-cccCC--CCCCCeEEEEcchHHHHhcCCCce
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLV-VNKEA--FSDPRLELVINDARAELESRKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~-~~~~~--~~~~rv~~~~~D~~~~l~~~~~~f 176 (251)
..+..|.|+=-|+|..++.+...- +...|+++-.++ ....+..+-+ ++... -...+++.+-.+...+. ..+.-
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 466899999999999999888752 224666654433 2222222110 00000 01123444444443333 34677
Q ss_pred eEEEEcCCCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 177 DVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+++....++... .....-+...++++ +.+.|||||++.+..
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEEe
Confidence 7777765543211 11112334678888 799999999998754
No 355
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.15 E-value=1.2 Score=39.20 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=62.1
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCCC-------CCeEEEEcchHHH
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~~~~~D~~~~ 168 (251)
++|.+||+|.-+ ++..+++. + .+|+.+|.+++.++.+.+.+..+ ...... .++++. .|. +-
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-G-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 679999998544 45555554 3 48999999999988765432110 000000 223332 332 22
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ ...|+|+...++.. -....+++. +...++|+.+++.++.+
T Consensus 81 ~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 L----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS 121 (292)
T ss_pred h----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 2 46899999876421 113467788 78889998888766643
No 356
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.95 E-value=2.5 Score=37.85 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
.++.+||++|+|. |..+..+++..+. +|++++.+++-.+.+++.
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 3468999999855 4455666776654 799999999999888763
No 357
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.71 E-value=1.6 Score=38.49 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=60.6
Q ss_pred CCeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh-----ccc-CCCCC-------CCeEEEEcchHH
Q 025534 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA 167 (251)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----~~~-~~~~~-------~rv~~~~~D~~~ 167 (251)
-++|.+||+| +..++..+++. + .+|+++|.+++.++.+++.+. +.. ..... .+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3689999998 34456666664 3 589999999999886654322 000 00000 0122 22332 2
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 168 ~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
-+ +.-|+|+...++.. -....++++ +.+.++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieav~e~~-------~~k~~v~~~-l~~~~~~~~il~s~tS 120 (295)
T PLN02545 80 EL----RDADFIIEAIVESE-------DLKKKLFSE-LDRICKPSAILASNTS 120 (295)
T ss_pred Hh----CCCCEEEEcCccCH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 22 45799998876421 112467777 6778888887776654
No 358
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=89.67 E-value=0.75 Score=40.83 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhch
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL 146 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~ 146 (251)
..+.+|..||.|+..+..++.+.| ++|++||+||.-|.+-+-.+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHH
Confidence 456889999999877888888764 69999999999998876544
No 359
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.66 E-value=1.7 Score=36.24 Aligned_cols=34 Identities=18% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|||+ |. ++..|++ .++.+++.+|-|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~-~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 357899999985 22 3444444 5788999999774
No 360
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.65 E-value=1.2 Score=41.16 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=46.6
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCceeEE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI 179 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~fD~I 179 (251)
++||+||||.=+ ++..++++ +..+|++.|.+++-.+.+.... .++++.+.-|+.+. +...=..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence 589999995321 23344444 3479999999988877776542 34677777666543 11111456999
Q ss_pred EEcCCC
Q 025534 180 IGDLAD 185 (251)
Q Consensus 180 i~D~~~ 185 (251)
|.-.+.
T Consensus 73 In~~p~ 78 (389)
T COG1748 73 INAAPP 78 (389)
T ss_pred EEeCCc
Confidence 987763
No 361
>PLN02740 Alcohol dehydrogenase-like
Probab=89.62 E-value=3.9 Score=37.23 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=56.3
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f 176 (251)
....+||++|+|.=+ .+..+++..+..+|++++.+++-.+.+++. ... .-+.... .|..+.+.. ..+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT------DFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCC
Confidence 346899999874322 345566666655799999999999999764 211 1111111 123333332 22369
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~ 219 (251)
|+|+--.- .+ +.++. ..+.++++ |++++-.
T Consensus 270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEEc
Confidence 98875431 11 33445 45678886 8876543
No 362
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.54 E-value=2 Score=41.39 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=58.3
Q ss_pred CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc----CCC
Q 025534 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKE 174 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~ 174 (251)
.+++||+-|+| |+++.++.+. .+.+++...|.|+.-+...++.+... +...+++++.+|.++.-+- .+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 56888888876 7777666552 24579999999999998887766532 1247899999999886331 235
Q ss_pred ceeEEEEcCC
Q 025534 175 SYDVIIGDLA 184 (251)
Q Consensus 175 ~fD~Ii~D~~ 184 (251)
+.|+|+..+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 6999999876
No 363
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=89.44 E-value=0.31 Score=42.82 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=68.3
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
+...-++++|||.|-...- .+ ...+.+.|+....+..+++- ....+..+|+.+.. ...+.||.++
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p-~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NP-LCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCcC---CC-cceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccch
Confidence 4467799999999865432 23 46899999999988888753 11267778877643 3468899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+-+.-++.. ...-....+++ +.+.|+|||...+..
T Consensus 109 siavihhls---T~~RR~~~l~e-~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 109 SIAVIHHLS---TRERRERALEE-LLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhh---hHHHHHHHHHH-HHHHhcCCCceEEEE
Confidence 876533210 11223467888 689999999766543
No 364
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.38 E-value=4.3 Score=31.44 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=44.7
Q ss_pred CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc-hHHHHhcCCCcee
Q 025534 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D-~~~~l~~~~~~fD 177 (251)
.+.++||+||.|+-+ ++..++.. +..+|+.+.-+.+-.+...+.++ ...++++.-+ ..+.+ .++|
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D 77 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD 77 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence 367899999997543 34455554 66789999999765444333331 2345554433 22233 4799
Q ss_pred EEEEcCCC
Q 025534 178 VIIGDLAD 185 (251)
Q Consensus 178 ~Ii~D~~~ 185 (251)
+||.-.+.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 99987664
No 365
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.37 E-value=1.5 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|+|+ |. ++..|+. .++.+++.+|-|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~-~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL-SGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 457899999975 22 3344444 5788999999874
No 366
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.34 E-value=3.4 Score=36.82 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=54.2
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.++.+||+.|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +.. .++..+ + ...+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~---------~vi~~~--~---~~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA---------SAGGAY--D---TPPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc---------eecccc--c---cCcccceEE
Confidence 3467999999643 334566667655 4799999999988888874 110 011000 0 112458876
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+.... .+ +.+.. ..+.|+++|++++-.
T Consensus 228 i~~~~-----~~-------~~~~~-~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAP-----AG-------GLVPP-ALEALDRGGVLAVAG 254 (329)
T ss_pred EECCC-----cH-------HHHHH-HHHhhCCCcEEEEEe
Confidence 64321 11 23555 467899999987643
No 367
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.30 E-value=3.2 Score=37.40 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f 176 (251)
.++.+||+.|+ |.|.++.++++..+ .+|++++.+++-.+.+++.++.. .-+.... .|..+.+.. .++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence 35688999997 35556777888765 47999999998888876433311 1111111 133333332 23469
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+|+ |.. +. ..+.. ..+.|+++|.+++-.
T Consensus 230 D~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 9888 432 11 23455 467899999988643
No 368
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=89.22 E-value=1.8 Score=37.75 Aligned_cols=101 Identities=20% Similarity=0.341 Sum_probs=48.6
Q ss_pred CCCCCeEEEEecCchH--H-HHHHHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCC
Q 025534 100 HPNPKTIFIMGGGEGS--T-AREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~--~-~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~ 174 (251)
.|...|||.+|.|+-- . +...+++ |..+.++-.|+++-+ ...-..+.+|.+.+. .+.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----------------SDa~~~~~~Dc~t~~--~~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----------------SDADQSIVGDCRTYM--PPD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSSEEEES-GGGEE--ESS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----------------cccCCceeccccccC--CCC
Confidence 4677899999998632 1 1222332 444566667765422 123456778987764 468
Q ss_pred ceeEEEEcCCCCCCCC------cccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 175 SYDVIIGDLADPIEGG------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~------p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+||+||+|.+++.... ....++ .-+..- ++..|+-||.+++...
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~-i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGF-IKEKLALGGSVAIKIT 170 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THH-HHHHHH-HHHHEEEEEEEEEEE-
T ss_pred cccEEEEecccccccccccccCCccccH-HHHHHH-HHhhhhcCceEEEEee
Confidence 9999999998643211 011121 122232 5789999999998763
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.20 E-value=4.5 Score=37.26 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCeEEEEec--CchHHHHHHHhcC--CCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE----cchHHHHhc-C
Q 025534 102 NPKTIFIMGG--GEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-R 172 (251)
Q Consensus 102 ~~~~VL~iG~--G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~----~D~~~~l~~-~ 172 (251)
...+||++|+ +-|..+.++++.. +..+|+++|.+++-++.+++.++.... .......++. .|..+.+.. +
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence 3478999984 3455666677753 234799999999999999886431100 0000111121 234344432 2
Q ss_pred -CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 173 -~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+..+|+|+.... .+ ..+.. ..+.|+++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~~-------~~~~~-a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----VP-------ELVEE-ADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----CH-------HHHHH-HHHHhccCCeEEEE
Confidence 346998886532 11 34455 46788988866544
No 370
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.09 E-value=0.099 Score=46.26 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCchHHHH-HHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTAR-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.....|.|+=.|-|.++. .+.+ .++..|.++|.||..++..|+.+..|. ...|.+++.+|-|.- .....-|-|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrV 266 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRV 266 (351)
T ss_pred cccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhe
Confidence 345779999999999887 5555 467899999999999999999987664 345777788886543 235678888
Q ss_pred EEcCC
Q 025534 180 IGDLA 184 (251)
Q Consensus 180 i~D~~ 184 (251)
.+-.-
T Consensus 267 nLGLl 271 (351)
T KOG1227|consen 267 NLGLL 271 (351)
T ss_pred eeccc
Confidence 87653
No 371
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.06 E-value=2.1 Score=41.07 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=65.4
Q ss_pred CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----c-cCCCC-------CCCeEEEEcchH
Q 025534 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR 166 (251)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~~~~~D~~ 166 (251)
+-++|-+||+|. ++++..+++. + -.|+.+|.+++.++.+.++... . .+.+. -.+++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 457899999984 3466666664 3 5899999999999987655421 0 00000 0134433 2322
Q ss_pred HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ + ...|+||...++.. -....+|.. +.+.++|+.+++.|+.+
T Consensus 83 ~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt 124 (507)
T PRK08268 83 D-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS 124 (507)
T ss_pred H-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 2 2 36899999877532 113467777 67888888888888754
No 372
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.02 E-value=1.1 Score=36.22 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCC-C--CCCCeEEEEcch-------HHHHh
Q 025534 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDA-------RAELE 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~--~~~rv~~~~~D~-------~~~l~ 170 (251)
+|.+|+++|.|.=+. +.++++.-+ .+++..|.+++..+..+......-.. . ...+-.+-..|. ...+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 578999999986553 455555445 58999999999888777654321000 0 000000000010 11111
Q ss_pred cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 171 ~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
+.-..+|+||....-+.... ..|.+.+..+. |+|+-+++
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~--P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRA--PRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS-----SBEHHHHHT-----SSTTEEEE
T ss_pred HHHhhCcEEeeecccCCCCC--CEEEEhHHhhc-----cCCCceEE
Confidence 11246999998764333212 36888876554 55655554
No 373
>PLN02827 Alcohol dehydrogenase-like
Probab=89.00 E-value=4.1 Score=37.17 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f 176 (251)
.++.+||+.|+|+= .++.++++..+...|++++.+++-.+.+++. ... .-+.... .|..+.+.. ....+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 34689999986432 2345566665655799999999988888764 211 0011111 133333332 23369
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~ 219 (251)
|+|+-..- .+ ..+.. ..+.|+++ |++++..
T Consensus 265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence 98884321 11 23444 45678898 9987643
No 374
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.99 E-value=0.37 Score=41.58 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=34.3
Q ss_pred CCeEEEEecCchHHHHHHHhc-C-------CCcEEEEEECChHHHHHHHhchh
Q 025534 103 PKTIFIMGGGEGSTAREILRH-K-------TVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~-~-------~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
+-+|+++|.|+|.++.-+++. . ...+++.||++|.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 478999999999999888773 1 12489999999999988887664
No 375
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.96 E-value=2.8 Score=36.73 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+|+++|+|+ |+...+.+...++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 567999999984 44444444445778999999884
No 376
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.79 E-value=3.2 Score=39.64 Aligned_cols=111 Identities=12% Similarity=0.224 Sum_probs=67.0
Q ss_pred CeEEEEecCchHHHHHHHhc----CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH-HHhcCCCceeE
Q 025534 104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~-~l~~~~~~fD~ 178 (251)
..|.+.-||+|++.....+. .....+++-|+++.+...++.+.-++.. ..+..+...+|-.. +-.....+||.
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 68999999999988765432 1224689999999999999988644321 11223333344322 10002357999
Q ss_pred EEEcCCCC--CCCC--cc---------------cCCccHHHHHHHHcccCCCCcEEEE
Q 025534 179 IIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 179 Ii~D~~~~--~~~~--p~---------------~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
|+.|+|.. |..+ |. ..-....|+.. ...+|++||...+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~ai 353 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAAI 353 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEEE
Confidence 99998732 2111 10 00113457777 5789999996543
No 377
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.79 E-value=5.8 Score=35.57 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=58.1
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~ 178 (251)
+..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|.. -+ ..-|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence 456899999988 666555554444457999999986654 2211 1111 011122345543 5633 22 34699
Q ss_pred EEEcCCCCCCCCcc-cCC------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534 179 IIGDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 179 Ii~D~~~~~~~~p~-~~l------~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
|+...-.+...+.. ..+ .-.++.+. +.+ ..|++++++-++
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvsN 123 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVTN 123 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEecC
Confidence 99876322210100 000 11355565 444 478997765443
No 378
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.66 E-value=1.6 Score=37.14 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+|+++|||+ |+ ++..|++ .++.+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence 457899999984 33 4555555 4678999997664
No 379
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.64 E-value=4.4 Score=36.26 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCCCeEEEEecCchH-HHHHHHhc-CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.++.+||++|+|+=+ ++..++++ .+..+|+++|.+++-++.+++ +.. . ....+ ... ...+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~---~~~--~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD---IPE--DLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh---hhh--ccCCcE
Confidence 346899999975433 33455553 344689999999988888875 211 0 01111 111 124898
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
|+ |... ++ .+...+.. ..+.|+++|++++-.
T Consensus 226 vi-D~~G----~~----~~~~~~~~-~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AF-ECVG----GR----GSQSAINQ-IIDYIRPQGTIGLMG 256 (341)
T ss_pred EE-ECCC----CC----ccHHHHHH-HHHhCcCCcEEEEEe
Confidence 87 4331 11 01244566 568999999987643
No 380
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.60 E-value=4 Score=36.12 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~ 178 (251)
++.+||+.|+|. |..+.++++..+...+.+++.+++..+.+++. .. +.-+.....+..+.+.. .++.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 467899866542 44556667765544788888888888877754 11 11111112233333332 2357998
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
|+.... + .+.++. ..+.|+++|+++.
T Consensus 240 vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~ 265 (347)
T cd05278 240 VIEAVG-----F-------EETFEQ-AVKVVRPGGTIAN 265 (347)
T ss_pred EEEccC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence 884321 1 134555 5678899998874
No 381
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.59 E-value=4 Score=35.80 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=58.8
Q ss_pred CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD 177 (251)
.++.+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.....|..+.+.. .+..+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence 34678999984 45556777777765 4799999999988888873 211 0111111233333322 235699
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+ |... + +.++. ..+.|+++|.++..
T Consensus 214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence 888 4321 1 23455 57789999998753
No 382
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.51 E-value=3.2 Score=37.33 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=60.3
Q ss_pred CCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025534 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~-~~~fD 177 (251)
.+.+||+.|+.+ |.++.++++..+. .+.++--+++-.+.+++.-. +.-+.....|..+-+++ + ++.+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCce
Confidence 468999999644 4578888887664 55555555555557776532 12234444555555543 2 34699
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+|+--. + .+.+.. ..+.|+++|.++.-..
T Consensus 214 vv~D~v------G-------~~~~~~-~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 214 VVLDTV------G-------GDTFAA-SLAALAPGGRLVSIGA 242 (326)
T ss_pred EEEECC------C-------HHHHHH-HHHHhccCCEEEEEec
Confidence 998442 1 134444 4678999999987543
No 383
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.48 E-value=6.9 Score=34.75 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=55.7
Q ss_pred CeEEEEecCc-hHH-HHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025534 104 KTIFIMGGGE-GST-AREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (251)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 180 (251)
++|.+||+|. |.. +..++.. +. .++..+|++++..+....-+.... ......+++..+|..+ + ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEE
Confidence 3799999975 332 3333433 33 489999999887654333221100 0012234555555332 2 4799999
Q ss_pred EcCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+-...|...+.. ..++ . +++.+. ++ .-.|+|++++-++
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~-i~-~~~~~~~vivvsN 118 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPK-IK-ASGFDGIFLVASN 118 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HhCCCeEEEEecC
Confidence 976544311110 0111 1 233333 23 3678998776543
No 384
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.36 E-value=7.7 Score=34.75 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
..+.||.+||+|. |.....++...+. .++..+|++++..+--..-+.... .+. .++++..+|..++ ...|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~~-----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSDC-----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHHh-----CCCCE
Confidence 4568999999976 5544443333343 479999998876543222121110 111 3466665664332 46899
Q ss_pred EEEcCCCCCCCCcc-cCCc--cHHHHHHHHc--ccCCCCcEEEEecC
Q 025534 179 IIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG 220 (251)
Q Consensus 179 Ii~D~~~~~~~~p~-~~l~--~~ef~~~~~~--~~L~pgG~l~~~~~ 220 (251)
|++-+-.|...+.. ..++ ....++.++. +...|+|++++-++
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99876443311110 0111 1223333122 23458998876543
No 385
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.34 E-value=5.1 Score=35.31 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=58.4
Q ss_pred CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f 176 (251)
.++.+||+.|. |.|..+.++++..+ .+|+++..+++-.+.+++. +.. .-+.... .+..+.++. .++.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence 45689999984 45667777888765 4799999999888888763 211 0011111 122333332 23569
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|+|+ |... + +.+.. ..++|+++|.++..
T Consensus 209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEe
Confidence 9988 4321 1 22345 56789999999864
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.28 E-value=1.4 Score=40.50 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (251)
..++||++|+|+ |. ++..|++ .++.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~-~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAA-AGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 567899999984 33 3445555 467899999998
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.27 E-value=0.99 Score=36.20 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHH
Q 025534 93 VHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF 141 (251)
Q Consensus 93 ~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ 141 (251)
.+.|+....+.++||++|+|.=+. ++.|++. + .+|+.| +|+..+.
T Consensus 3 ~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~-g-a~V~VI--sp~~~~~ 49 (157)
T PRK06719 3 NMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT-G-AFVTVV--SPEICKE 49 (157)
T ss_pred cccceEEEcCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEE--cCccCHH
Confidence 346777777899999999986554 3445553 3 588888 4554443
No 388
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.21 E-value=2.6 Score=40.37 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=64.7
Q ss_pred CCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhc-----c-cCCCC-------CCCeEEEEcchH
Q 025534 102 NPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR 166 (251)
Q Consensus 102 ~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~~~~~D~~ 166 (251)
+.++|-+||+|+= .++..+++. + -.|+.+|.+++.++.++++... . .+.+. ..|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 3468999999853 355555654 3 5899999999999876554321 0 00000 0233332 3332
Q ss_pred HHHhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 167 ~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ + ...|+||...++.. -...++|.. +.+.++|+.+++.|+.+
T Consensus 81 ~-l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 A-L----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred H-h----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 2 2 36899999877532 123567787 68888888888878754
No 389
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.14 E-value=14 Score=33.23 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc-cCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~ 178 (251)
+.++|.+||+|. |.....++...+..++..+|++++..+ ++. +... .........++.. +|.. -+ ..-|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~~-~l----~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNYE-DI----AGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCHH-Hh----CCCCE
Confidence 447899999987 443333333344457999999998642 111 1000 0001223345654 6743 22 45799
Q ss_pred EEEcCC
Q 025534 179 IIGDLA 184 (251)
Q Consensus 179 Ii~D~~ 184 (251)
|+.-.-
T Consensus 78 VI~tag 83 (321)
T PTZ00082 78 VIVTAG 83 (321)
T ss_pred EEECCC
Confidence 998654
No 390
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.08 E-value=2.4 Score=36.27 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=24.7
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|||+ |+...+.+.+.++.+++.+|-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457899999973 44444344445788999999875
No 391
>PLN02494 adenosylhomocysteinase
Probab=87.90 E-value=6.8 Score=37.18 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=61.2
Q ss_pred CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..+++|+++|+|.=+.. ...++..+ .+|+++|.|+.-...+... . ..+. +..+.+ +..|+|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVV 313 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIF 313 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEE
Confidence 35789999999854422 22233345 4899999998654444332 0 1111 233333 357999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHH-HHHHhhCCceeeec
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKCGYNLT 249 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~-~~l~~~F~~v~~~~ 249 (251)
+..... ..+.. .. ..+.+|+||+++ |.+.+...-+...+...- -.-+++.|++.-|.
T Consensus 314 I~tTGt-------~~vI~----~e-~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~ 371 (477)
T PLN02494 314 VTTTGN-------KDIIM----VD-HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV 371 (477)
T ss_pred EECCCC-------ccchH----HH-HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEE
Confidence 873211 12222 23 346799988876 665532122333333221 01134556666554
No 392
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.72 E-value=3.2 Score=36.25 Aligned_cols=88 Identities=25% Similarity=0.221 Sum_probs=52.9
Q ss_pred eEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+|.+||+|. |.++..+.+. + .+|+++|.+++.++.+.+.-. +.....+. +.+ ...|+|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 688999885 4566666654 3 489999999998887765310 11111221 222 457999988
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
.+... ..++++. +...++++-++ +..+
T Consensus 65 vp~~~---------~~~~~~~-l~~~l~~~~ii-~d~~ 91 (279)
T PRK07417 65 LPIGL---------LLPPSEQ-LIPALPPEAIV-TDVG 91 (279)
T ss_pred CCHHH---------HHHHHHH-HHHhCCCCcEE-EeCc
Confidence 65211 2356666 56777766444 4443
No 393
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=87.63 E-value=1.8 Score=42.63 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEE---EEECChHHHHHHHhchhcccCCCCCCCeEEEE--------cch----
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--------NDA---- 165 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--------~D~---- 165 (251)
..++.+|..|=|+|+++..+++..+..++. ..|++..+.+-+.-.-+-.=....+.+-+.+. .|.
T Consensus 321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~ 400 (675)
T PF14314_consen 321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE 400 (675)
T ss_pred CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence 456889999999999999999976656664 34555444332221111000000011222222 111
Q ss_pred -HHHHh----cCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHh
Q 025534 166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (251)
Q Consensus 166 -~~~l~----~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (251)
.+|.. +.+-++|+|++|.--... .. .... .......+...|+++|.+++.+.-.. .. ..-..++..+..
T Consensus 401 TW~YF~~l~~~~~~~idLiv~DmEV~d~-~~-~~kI-e~~l~~~~~~ll~~~gtLIfKTYlt~-l~--~~~~~il~~lg~ 474 (675)
T PF14314_consen 401 TWKYFVSLKKQHNLSIDLIVMDMEVRDD-SI-IRKI-EDNLRDYVHSLLEEPGTLIFKTYLTR-LL--SPDYNILDLLGR 474 (675)
T ss_pred HHHHHHHHHhhcCCcccEEEEeceecCh-HH-HHHH-HHHHHHHHHHhcCCCcEEEEehhHhh-hh--cchhhHHHHHHh
Confidence 12222 235689999999742110 00 0011 12222224578899999998763211 11 112368889999
Q ss_pred hCCceeee
Q 025534 241 VFKCGYNL 248 (251)
Q Consensus 241 ~F~~v~~~ 248 (251)
.|+.|..+
T Consensus 475 ~F~~V~l~ 482 (675)
T PF14314_consen 475 YFKSVELV 482 (675)
T ss_pred hcCceEEE
Confidence 99988754
No 394
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.62 E-value=3.9 Score=36.45 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=56.7
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~ 178 (251)
.++.+||+.|+|+=+ .+.++++..+...|++++.+++-.+.+++. ... .-+.....+..+..+. .+..+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM------QTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------eEecCcccCHHHHHHHhcCCCCCe
Confidence 346899999864322 345556665655589999999988888763 211 0011111121222222 2346886
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++|... . ...+.. ..+.|+++|.+++-.
T Consensus 232 ~v~d~~G----~-------~~~~~~-~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG----V-------PQTVEL-AIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence 6667542 1 134455 467899999988653
No 395
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.51 E-value=7.2 Score=35.28 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
....+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 3468999998753 23455667766655799999999999988764
No 396
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.37 E-value=5.4 Score=35.46 Aligned_cols=98 Identities=23% Similarity=0.280 Sum_probs=56.8
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcc----hHHHHhc-CCC
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELES-RKE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D----~~~~l~~-~~~ 174 (251)
.++.+||+.|+|+ |..+.++++..+...|+++..+++-.+.+++. +.. .-+.....+ ..+..+. .++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence 4568999987654 44566777766644489999888888877663 211 001111112 1111111 235
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.+|+|+-.... ...... ..+.|+++|.++..
T Consensus 234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 69999864321 124455 56789999988754
No 397
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=87.07 E-value=6.6 Score=33.19 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=40.0
Q ss_pred hhcCCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 97 ~~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
.+....|-+.|+.|.|-..+.-..+.+. .+...+|=|+..+..+++..+
T Consensus 34 VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p 82 (225)
T TIGR01627 34 VLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP 82 (225)
T ss_pred HHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence 3345578999999999999988888874 467899999999999887654
No 398
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.04 E-value=2.8 Score=32.59 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=21.6
Q ss_pred eEEEEecCc-hH-HHHHHHhcCCCcEEEEEECC
Q 025534 105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (251)
Q Consensus 105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (251)
+||++|||+ |. ++..|++ .+..+++.+|-|
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence 589999973 33 3455555 467899999987
No 399
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.97 E-value=4.1 Score=37.89 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=48.0
Q ss_pred CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcC-CCce
Q 025534 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~-~~~f 176 (251)
..++++++|+|.=+ ++..|.+. + ..|+++|.|++.++..++.+ +.+.++.+|+.+ .+... -+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~-~-~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE-G-YSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46889999996543 23333332 3 58999999999988776532 246788888843 33322 3679
Q ss_pred eEEEEcCC
Q 025534 177 DVIIGDLA 184 (251)
Q Consensus 177 D~Ii~D~~ 184 (251)
|.|++-..
T Consensus 299 ~~vi~~~~ 306 (453)
T PRK09496 299 DAFIALTN 306 (453)
T ss_pred CEEEECCC
Confidence 99887654
No 400
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=86.88 E-value=3.2 Score=37.36 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=48.8
Q ss_pred EEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHh-----cC-CCceeEEE
Q 025534 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----SR-KESYDVII 180 (251)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~-----~~-~~~fD~Ii 180 (251)
+|||.|.-.+--.+-.....-..++.|+|..-++.|+++.+.++ ...++++++.....-+- .. +..||..+
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~---lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN---LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc---cccceeeEEecchhhcchhhhccCccceeeEEe
Confidence 56776654432222222122468899999999999999988664 34677777765433321 11 34699999
Q ss_pred EcCC
Q 025534 181 GDLA 184 (251)
Q Consensus 181 ~D~~ 184 (251)
+++|
T Consensus 184 cNPP 187 (419)
T KOG2912|consen 184 CNPP 187 (419)
T ss_pred cCCc
Confidence 9997
No 401
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.63 E-value=1.9 Score=39.74 Aligned_cols=43 Identities=5% Similarity=0.079 Sum_probs=34.5
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
.+..+||-|.+|+..+..++++.| ++|++||+||....+.+-.
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHH
Confidence 345689999998877777777653 6999999999998887643
No 402
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.53 E-value=6.9 Score=34.73 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~-~~~~f 176 (251)
.++.+||+.|+ |-|..+.++++..+ .+|+++..+++-.+.+++.++.. .-+.... .|..+.+.. .+..+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 35689999996 45556777788766 47888898888888887633321 1111111 133333332 23579
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|+|+ |... + ..+.. ..+.|+++|.++..
T Consensus 223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence 9888 4321 1 23455 46789999998854
No 403
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.48 E-value=1.6 Score=41.16 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=45.7
Q ss_pred HhHhhcCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH
Q 025534 94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (251)
Q Consensus 94 ~~~~~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l 169 (251)
+.|+....+.++||++|+|.=+.- ..+++. + ++|++| |+++++-+++.+ .+++++..+...-
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~-g-a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~~- 68 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDA-G-ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDES- 68 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCChH-
Confidence 356666678899999999876654 334443 3 577777 777777655442 3566665443221
Q ss_pred hcCCCceeEEEEcCC
Q 025534 170 ESRKESYDVIIGDLA 184 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~ 184 (251)
.-+.+++|+....
T Consensus 69 --dl~~~~lv~~at~ 81 (457)
T PRK10637 69 --LLDTCWLAIAATD 81 (457)
T ss_pred --HhCCCEEEEECCC
Confidence 1135677776543
No 404
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.38 E-value=3.3 Score=40.66 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=49.4
Q ss_pred CCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-Ccee
Q 025534 103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYD 177 (251)
Q Consensus 103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD 177 (251)
..+|+++|+|.=+ +++.+.+. + .+++++|.|++.++.+++. ..+++.+|+.+. +++.+ ++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 3689999997654 23444433 3 4799999999999988763 357899998654 44333 6889
Q ss_pred EEEEcCCC
Q 025534 178 VIIGDLAD 185 (251)
Q Consensus 178 ~Ii~D~~~ 185 (251)
++++-..+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88887654
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=86.27 E-value=5.9 Score=33.78 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHH-HHHHHhchhcccCCCCCCCeEEEEcchHH------HHh
Q 025534 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------ELE 170 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~ 170 (251)
..+++||+.|+.+|. ++++++++. ..+|+.++.+++- ++...+.+... ...+++++..|..+ .++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence 467889999996554 334444442 3589999888763 44333333221 12367887777532 121
Q ss_pred c--CCCceeEEEEcCC
Q 025534 171 S--RKESYDVIIGDLA 184 (251)
Q Consensus 171 ~--~~~~fD~Ii~D~~ 184 (251)
. ..+..|+++.+..
T Consensus 81 ~~~~~g~id~li~~ag 96 (253)
T PRK07904 81 AAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHhcCCCCEEEEeee
Confidence 1 1257999887653
No 406
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.19 E-value=1.7 Score=36.29 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHH
Q 025534 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVE 140 (251)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~ 140 (251)
.+.+++||++|.- +|....+++.. ..+|+++|++|.+-.
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~ 81 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRG 81 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHh
Confidence 4678999999984 66667777764 369999999997733
No 407
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.86 E-value=5.1 Score=33.71 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=45.4
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchH-----------H
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-----------A 167 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~-----------~ 167 (251)
+.++||+.|+.+|. +++.+++. + .+|.+++.++.-.+...+.+... ...++.++..|.. +
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARH-G-ATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHH
Confidence 56789999975443 33444443 3 48999999987665444433211 1235666665552 1
Q ss_pred HHhcCCCceeEEEEcCC
Q 025534 168 ELESRKESYDVIIGDLA 184 (251)
Q Consensus 168 ~l~~~~~~fD~Ii~D~~ 184 (251)
.+.+...+.|.||..+.
T Consensus 85 ~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 22222357999999874
No 408
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.83 E-value=2.8 Score=37.22 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=53.7
Q ss_pred CeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhc--hhcccCCCCCCCeE--EEEcchHHHHhcCCCcee
Q 025534 104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLE--LVINDARAELESRKESYD 177 (251)
Q Consensus 104 ~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--~~~~~~~~~~~rv~--~~~~D~~~~l~~~~~~fD 177 (251)
.||+++|+|. |+ ++..|.+. + ..|+.++-.++-++..++. +.... ...... +...+ ....+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G-~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-G-LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-C-CCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence 4799999884 33 45555553 3 4799999987666666542 22111 001111 11111 11235799
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
+|++-.-. ..+.+.++. ++.++.++..++.
T Consensus 73 ~viv~vK~---------~~~~~al~~-l~~~l~~~t~vv~ 102 (305)
T PRK05708 73 RLLLACKA---------YDAEPAVAS-LAHRLAPGAELLL 102 (305)
T ss_pred EEEEECCH---------HhHHHHHHH-HHhhCCCCCEEEE
Confidence 99987421 224577777 7888999886543
No 409
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.81 E-value=25 Score=31.25 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=47.7
Q ss_pred cCCCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025534 99 HHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (251)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f 176 (251)
..++.+++++||+|.=+-. ..+....+..+|..++.+++-.+...+.+... .+.+...|..+.+ ...
T Consensus 121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~a 189 (304)
T PRK07340 121 APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP----EAV 189 (304)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcC
Confidence 3456789999999755432 23323345678999999987766544443311 1233356665555 479
Q ss_pred eEEEEcCCC
Q 025534 177 DVIIGDLAD 185 (251)
Q Consensus 177 D~Ii~D~~~ 185 (251)
|+|+.-.+.
T Consensus 190 DiVitaT~s 198 (304)
T PRK07340 190 DLVVTATTS 198 (304)
T ss_pred CEEEEccCC
Confidence 999987653
No 410
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=1.5 Score=39.88 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=38.1
Q ss_pred CCCCCeEEEEecCchHHHHHHHhc----C----CCcEEEEEECChHHHHHHHhchh
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
.|.+-++++||.|.|.++.-+++. . ...++..||+||+..+.=++.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 456788999999999988777652 1 35689999999999887776654
No 411
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.67 E-value=12 Score=33.09 Aligned_cols=108 Identities=25% Similarity=0.281 Sum_probs=54.5
Q ss_pred CeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHH-hchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeEEE
Q 025534 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCK-SYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVII 180 (251)
Q Consensus 104 ~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~Ii 180 (251)
.+|-+||+|. |......+...+..+|..+|++++..+... ....... ......++.. +|..+ + ..-|+|+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~--~~~~~~~i~~~~d~~~-~----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP--VEGFDTKITGTNDYED-I----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh--hcCCCcEEEeCCCHHH-H----CCCCEEE
Confidence 5899999988 655444443333228999999988754221 1111100 0111234442 45322 2 3579999
Q ss_pred EcCCCCCCCCcc-cCC------ccHHHHHHHHcccCCCCcEEEEecC
Q 025534 181 GDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 181 ~D~~~~~~~~p~-~~l------~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
+....|...+.. ..+ .-.++++. +.+. .|++++++.++
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN 120 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN 120 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence 876433311110 000 11345555 4444 47887776554
No 412
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.59 E-value=9.4 Score=33.83 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025534 102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD~I 179 (251)
.+++|++||.|.-+.+ ...++..+ .+|++++.+++..+.+++. . .+.+ ..+..+.+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence 5789999999764432 22333345 5999999998876666542 1 1111 12333333 469999
Q ss_pred EEcC
Q 025534 180 IGDL 183 (251)
Q Consensus 180 i~D~ 183 (251)
|.-.
T Consensus 215 I~t~ 218 (296)
T PRK08306 215 FNTI 218 (296)
T ss_pred EECC
Confidence 9864
No 413
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.50 E-value=7.8 Score=31.35 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
..+++++++|-|.=+ ++..+... + ++|+++|+||. ...+.+.. ..++. +..+.+ ...|+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~-G-a~V~V~e~DPi--~alqA~~d---------Gf~v~--~~~~a~----~~adi 81 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL-G-ARVTVTEIDPI--RALQAAMD---------GFEVM--TLEEAL----RDADI 81 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT-T--EEEEE-SSHH--HHHHHHHT---------T-EEE---HHHHT----TT-SE
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC-C-CEEEEEECChH--HHHHhhhc---------CcEec--CHHHHH----hhCCE
Confidence 467899999998654 34444443 4 69999999994 33333321 22332 222322 46898
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
|+... +. ....+.+.|+. || +|.++.|.++.
T Consensus 82 ~vtaT------G~-~~vi~~e~~~~-----mk-dgail~n~Gh~ 112 (162)
T PF00670_consen 82 FVTAT------GN-KDVITGEHFRQ-----MK-DGAILANAGHF 112 (162)
T ss_dssp EEE-S------SS-SSSB-HHHHHH-----S--TTEEEEESSSS
T ss_pred EEECC------CC-ccccCHHHHHH-----hc-CCeEEeccCcC
Confidence 88753 22 23445666665 44 46666788764
No 414
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.46 E-value=11 Score=33.90 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=55.1
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~--~D~~~~l~~-~~~~f 176 (251)
.++.+||++|+|.=+ .+..+++..+..+|++++.+++-.+.++++ ... .-+.... .+..+.+.. ....+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT------DFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------cEeccccccchHHHHHHHHhCCCC
Confidence 356899999764222 345566666655899999999988888763 210 0011111 112222321 23569
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~ 219 (251)
|+|+--.. . ...+.. ..+.|+++ |.++.-.
T Consensus 256 d~vid~~g-----~-------~~~~~~-~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTG-----N-------ADLMNE-ALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCC-----C-------hHHHHH-HHHhcccCCCEEEEEc
Confidence 98884321 1 123444 45678775 8887543
No 415
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.22 E-value=16 Score=32.47 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=55.2
Q ss_pred eEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHH-HHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 105 ~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+|.+||+|. |.. +..++......++..+|++++..+- +....... .+. +...+..+|..+ + ...|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence 689999986 333 3334443323589999999876652 22211110 111 224555555322 2 46899999
Q ss_pred cCCCCCCCCcc-cCCc--c----HHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~~~~~~~p~-~~l~--~----~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
-+..+...+.. ..+. + +++.+. +. ...|+|++++-+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~-l~-~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQ-IL-KYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HHCCCeEEEEec
Confidence 87655421110 0011 1 233444 23 366889888754
No 416
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.06 E-value=12 Score=33.85 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=56.5
Q ss_pred CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc--chHHHHhc-CCCce
Q 025534 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (251)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~--D~~~~l~~-~~~~f 176 (251)
.++.+||++|+|.= ..+.++++..+..+|++++.+++-.+.+++. ... .-+..... |..+.+.+ ++..+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT------DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------EEEcccccchHHHHHHHHHhCCCC
Confidence 45689999986422 2345566665644799999999998888763 211 00111111 23333332 23479
Q ss_pred eEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCC-cEEEEec
Q 025534 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (251)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pg-G~l~~~~ 219 (251)
|+|+--.. .+ ..+.. ..+.|+++ |.++.-.
T Consensus 258 d~vid~~g-----~~-------~~~~~-a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTFECIG-----NV-------KVMRA-ALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEEECCC-----Ch-------HHHHH-HHHhhccCCCeEEEEc
Confidence 98885321 11 23444 45678886 8877543
No 417
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.99 E-value=4.4 Score=33.97 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=44.8
Q ss_pred CeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------HhcCCC
Q 025534 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESRKE 174 (251)
Q Consensus 104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~~~~ 174 (251)
++|++.|+.+|. +++.+++. + .+|++++.+++-.+...+..... ...+++++..|..+. +....+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA-G-ARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 579999975443 33444443 3 58999999887554333322211 135788888876543 222234
Q ss_pred ceeEEEEcCC
Q 025534 175 SYDVIIGDLA 184 (251)
Q Consensus 175 ~fD~Ii~D~~ 184 (251)
++|.++.++.
T Consensus 76 ~~d~vv~~ag 85 (243)
T PRK07102 76 LPDIVLIAVG 85 (243)
T ss_pred cCCEEEECCc
Confidence 6899998764
No 418
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.95 E-value=6.3 Score=38.59 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=59.7
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~ 178 (251)
.+|+++|+|.=+ +++.+.++ + .+++++|.||+.++.++++ ..+++.+|+.+. +++.+ ++.|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-K-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 579999987544 23444433 3 4899999999999988763 357888998653 44333 68998
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++-..++.. +...... .+.+.|+..+++..
T Consensus 468 vv~~~~d~~~--------n~~i~~~--~r~~~p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPED--------TMKIVEL--CQQHFPHLHILARA 498 (601)
T ss_pred EEEEeCCHHH--------HHHHHHH--HHHHCCCCeEEEEe
Confidence 8887654321 1122232 34577777777654
No 419
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=84.75 E-value=8.9 Score=34.57 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~I 179 (251)
...+||+.|+|+ |..+..+++..+...+++++.+++-.+.+++. ... .-+.....+..+.+.. .+..+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcEE
Confidence 467899997643 33455666666655799999999888877763 110 0001001122222221 24569998
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+-.... + ..+.. +.+.|+++|.++..
T Consensus 259 ld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTGV-----P-------AVIEQ-AVDALAPRGTLALV 284 (365)
T ss_pred EECCCC-----c-------HHHHH-HHHHhccCCEEEEe
Confidence 854321 1 23444 46778889988754
No 420
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.66 E-value=6.9 Score=30.43 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=42.4
Q ss_pred CCCCeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
.++++|+++|+|.= .++..+.+. +..+|++++.+++-.+...+.+... .+.....|..+. -+..|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence 45689999998631 233344443 2468999999987665544332210 011222333222 257999
Q ss_pred EEEcCCCC
Q 025534 179 IIGDLADP 186 (251)
Q Consensus 179 Ii~D~~~~ 186 (251)
|++..+.+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99987653
No 421
>PLN02256 arogenate dehydrogenase
Probab=84.57 E-value=9.8 Score=33.90 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCCeEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
....+|.+||+|. |.++..+.+. + .+|++++.++. .+.++++ .+.. ..|..+.+. ...|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence 3567899999874 4455555543 3 47999999874 2334331 1221 344444432 35799
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHH-cccCCCCcEEEEecC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG 220 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~-~~~L~pgG~l~~~~~ 220 (251)
|++..+.. ...++++. + ...++++. +++..+
T Consensus 96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~ 127 (304)
T PLN02256 96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVL 127 (304)
T ss_pred EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecC
Confidence 99875421 13455666 4 45567765 444543
No 422
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.44 E-value=7.3 Score=33.87 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=51.6
Q ss_pred eEEEEecCc--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025534 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (251)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D 182 (251)
+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +. +.. ..+..+ + .+ .|+||+-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~---------~~~-~~~~~~-~---~~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GL---------VDE-IVSFEE-L---KK-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CC---------Ccc-cCCHHH-H---hc-CCEEEEe
Confidence 688999886 34556665542224799999999887776542 11 000 123222 2 12 7999988
Q ss_pred CCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecC
Q 025534 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (251)
Q Consensus 183 ~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~ 220 (251)
.+... ..+.+.. +.. ++++.+++ ..+
T Consensus 66 vp~~~---------~~~~~~~-l~~-l~~~~iv~-d~g 91 (275)
T PRK08507 66 IPVDA---------IIEILPK-LLD-IKENTTII-DLG 91 (275)
T ss_pred CcHHH---------HHHHHHH-Hhc-cCCCCEEE-ECc
Confidence 65321 2456666 566 77766544 443
No 423
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.43 E-value=9.9 Score=33.69 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=28.7
Q ss_pred CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 025534 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (251)
Q Consensus 104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (251)
.+|.+||+|.= .++..++++ + .+|+++|.+++.++.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-G-HEVRLWDADPAAAAAAPA 43 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-C-CeeEEEeCCHHHHHHHHH
Confidence 47999998843 355666664 3 489999999988887654
No 424
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=84.19 E-value=5.4 Score=36.64 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECC
Q 025534 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID 135 (251)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid 135 (251)
...+||++|+|+-+ ++..|++ .++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~-~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence 56789999998533 3455555 467899999988
No 425
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.14 E-value=15 Score=32.75 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=56.3
Q ss_pred eEEEEecCc-hHHH-HHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCC-CCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 105 ~VL~iG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
+|-+||+|. |... ..++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+. ..-|+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~~-----~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDDC-----ADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHHh-----CCCCEEEE
Confidence 578999976 5544 44444433458999999866543222111110 11122 3577777773332 46899998
Q ss_pred cCCCCCCCCcc---cCCc--cHHHHHHHHc--ccCCCCcEEEEecCC
Q 025534 182 DLADPIEGGPC---YKLY--TKSFYEFVVK--PRLNPEGIFVTQAGP 221 (251)
Q Consensus 182 D~~~~~~~~p~---~~l~--~~ef~~~~~~--~~L~pgG~l~~~~~~ 221 (251)
-+-.+...+.. ..|+ ..+.++.++. ..-.|+|++++-++|
T Consensus 75 taG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 75 TAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 76443311111 1111 1233333111 234588988875543
No 426
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.03 E-value=9 Score=32.23 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~-- 170 (251)
..++||+.|+++|. +++.+++. + .+|+++..+++-++...+.+... ..+++++..|..+ .+.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQA-G-AKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 46889999965443 23344443 3 48999999988776555543321 2357777777532 121
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
+..++.|+|+....
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 12246899999875
No 427
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.94 E-value=17 Score=33.35 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=58.6
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE---cchHHHHhc-C-CC
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-R-KE 174 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~---~D~~~~l~~-~-~~ 174 (251)
....+||+.|+|.=+ .+..+++..+...|.++|.+++-.+.+++. .. . .+.. .+..+.+.. . ..
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence 346789997664322 344566666655677789999888888874 21 1 1111 133333322 2 34
Q ss_pred ceeEEEEcCCCCCCCCcc--cCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 175 SYDVIIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~--~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+|+|+--.-.+....+. ..-.....+++ ..+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEee
Confidence 699888543322100000 00011135666 468999999998643
No 428
>PRK06194 hypothetical protein; Provisional
Probab=83.92 E-value=7.2 Score=33.58 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--H----h--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l----~-- 170 (251)
..++||+.|+++|. +++.+++. + .+|+.++.+++..+...+.+.. ...++.++..|..+. + .
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAAL-G-MKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC-C-CEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789999876543 34444443 3 5899999987665544333221 124677788886532 1 1
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
+..++.|+|+.++.
T Consensus 78 ~~~~g~id~vi~~Ag 92 (287)
T PRK06194 78 LERFGAVHLLFNNAG 92 (287)
T ss_pred HHHcCCCCEEEECCC
Confidence 11246899999875
No 429
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.86 E-value=2.6 Score=36.55 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
.+.+||++|+|+|..+..++.+.. .+|..-|+-. +++..+.+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc-ceeccCCchh-hHHHHHHh
Confidence 467899999999988777777543 5777777644 44444433
No 430
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.81 E-value=4.4 Score=40.48 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=65.5
Q ss_pred CeEEEEecCch--HHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHH
Q 025534 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~ 168 (251)
++|.+||+|+= +++..++...+ -.|+.+|.+++.++.+++++... ...+. -.++++. .|. +-
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH
Confidence 78999999873 34555553334 58999999999998877654211 00000 0234333 221 21
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ ...|+||-..++.. -..+++|++ +.+.++|+.+|+.|+.+
T Consensus 387 ~----~~aDlViEav~E~~-------~~K~~v~~~-le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 F----KHADVVIEAVFEDL-------ALKQQMVAE-VEQNCAPHTIFASNTSS 427 (708)
T ss_pred h----ccCCEEeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 2 46888887765321 124688999 79999999999988753
No 431
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=83.78 E-value=11 Score=35.80 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=51.4
Q ss_pred CCCCeEEEEecCchH-HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..+++|+++|+|.=+ .....++..+ .+|+++|.||.-...+... .+++. +..+.+ +..|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~~--~leell----~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQVV--TLEDVV----ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Cceec--cHHHHH----hcCCEE
Confidence 367999999998622 1222223344 4899999998765333321 12221 233333 468999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
++... . .++.+.+. .+.+|||++++ |.+.
T Consensus 314 I~atG-----t--~~iI~~e~-----~~~MKpGAiLI-NvGr 342 (476)
T PTZ00075 314 VTATG-----N--KDIITLEH-----MRRMKNNAIVG-NIGH 342 (476)
T ss_pred EECCC-----c--ccccCHHH-----HhccCCCcEEE-EcCC
Confidence 98632 1 23444443 35588888776 7654
No 432
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=83.76 E-value=4 Score=36.23 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=22.0
Q ss_pred eEEEEecCch-H-HHHHHHhcCCCcEEEEEECChH
Q 025534 105 TIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDEE 137 (251)
Q Consensus 105 ~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~~ 137 (251)
|||++|+|+= . ++..|+. .+..+++.+|.|.-
T Consensus 1 kVlVVGaGGlG~eilknLal-~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL-SGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEe
Confidence 6999999732 2 3344444 57889999998754
No 433
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.72 E-value=5.2 Score=29.40 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=37.0
Q ss_pred CCCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
..+.++||++|+|.-+..+.-.-....++|+.+..+. +.++ .++++...+..+. -..+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~----l~~~~lV 64 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED----LDGADLV 64 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG----CTTESEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH----HhhheEE
Confidence 3467899999998766644322222237999998876 2222 2445554443222 2569999
Q ss_pred EEcCC
Q 025534 180 IGDLA 184 (251)
Q Consensus 180 i~D~~ 184 (251)
+....
T Consensus 65 ~~at~ 69 (103)
T PF13241_consen 65 FAATD 69 (103)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 97654
No 434
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.69 E-value=7.2 Score=34.13 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=51.5
Q ss_pred eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeEE---EEcchHHHHhcCCCceeE
Q 025534 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV 178 (251)
Q Consensus 105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~~---~~~D~~~~l~~~~~~fD~ 178 (251)
+|+++|+|.-+. +..+.+. + .+|+.++. ++.++..++. +.... ......+ ...|.. ...+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~----~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDPE----ELTGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCHH----HccCCCCE
Confidence 699999987654 4445543 3 47999998 6666665543 22111 0011111 112211 11267999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
|++-...+ ...+.++. ++..+.++.+++.
T Consensus 72 vilavk~~---------~~~~~~~~-l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKAY---------QLDAAIPD-LKPLVGEDTVIIP 100 (305)
T ss_pred EEEEeccc---------CHHHHHHH-HHhhcCCCCEEEE
Confidence 99876432 13466677 6777877765553
No 435
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.66 E-value=12 Score=34.83 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=62.9
Q ss_pred CeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH----H-----Hhc-C-
Q 025534 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----E-----LES-R- 172 (251)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~----~-----l~~-~- 172 (251)
.+|-++|.|==++...+.-.....+|+++|||+..++...+-- ..+..-|..+ . ++. +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence 6888999986666544433222368999999999999876521 1111111111 1 111 1
Q ss_pred C---CceeEEEEcCCCCCCC--CcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 173 K---ESYDVIIGDLADPIEG--GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 173 ~---~~fD~Ii~D~~~~~~~--~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
. ...|++++..|-|... .| .--+-....+. +.+.|++|-.+++.+..|
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~p-Dls~v~~aa~s-Ia~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREP-DLSYVESAARS-IAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCC-ChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence 1 2688888877655432 23 12223455666 689999999999987544
No 436
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.60 E-value=10 Score=33.24 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=54.5
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEc---chHHHHhcCCCcee
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESYD 177 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~---D~~~~l~~~~~~fD 177 (251)
++.+||++|+|. |..+.++++..+...|.+++.+++..+.++++ ... .++.. +.........+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GAT---------ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCe---------EEecCCCCCHHHHHHhcCCCCc
Confidence 457999997542 34555666655544489999999988887653 110 11111 11111111246799
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+..... .+.... ..+.|+++|.++.-
T Consensus 229 ~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATGV------------PKTLEQ-AIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence 99854221 134455 46788999988753
No 437
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=83.52 E-value=3.3 Score=38.82 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCeEEEEecCchHHHHHHHh---cCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~---~~~~~~v~~VEid~ 136 (251)
...+||++|||+ ++.++++ .+++.++|.||-+.
T Consensus 19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence 457899999863 5555555 36888999999774
No 438
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.47 E-value=3.2 Score=37.62 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025534 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~ 178 (251)
.++.+|.++|||+=++ +..-++..+..+|.+||+++.-.++|+++=...- -+++-. +|..+.+... +.--|.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~---~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF---VNPKEV---DDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee---ecchhh---hhHHHHHHHhcCCCCCE
Confidence 3567899999976444 4444555677899999999999999999732210 011100 0566666543 335666
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.|-- . + ..+.+++ ..+.+..+|..++-
T Consensus 258 ~~e~-~-----G------~~~~~~~-al~~~~~~G~~v~i 284 (366)
T COG1062 258 AFEC-V-----G------NVEVMRQ-ALEATHRGGTSVII 284 (366)
T ss_pred EEEc-c-----C------CHHHHHH-HHHHHhcCCeEEEE
Confidence 6432 1 1 1245565 45666668876654
No 439
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.42 E-value=6.7 Score=30.57 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred CeEEEEecCchH---HHHHHHhcCCCcEEEEEECC--hHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHh--
Q 025534 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (251)
Q Consensus 104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~-- 170 (251)
|.||+.|+++|. +++.++++ +..+|..+.-+ .+-.+...+.++. ...++.++..|..+ .++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccc-----ccccccccccccccccccccccccc
Confidence 468899987664 45555665 45688888888 3333333332331 13678888877432 222
Q ss_pred -cCCCceeEEEEcCCC
Q 025534 171 -SRKESYDVIIGDLAD 185 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~~ 185 (251)
....+.|++|.++..
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 224689999998753
No 440
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.40 E-value=2.6 Score=40.04 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
.-++|+|+..|.|+++..|...+ + .+.-.-|. .....++. .++..=+= +.-|-.+-+.+-+.+||+|=.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~-V---WVMNVVP~---~~~ntL~v---IydRGLIG-~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP-V---WVMNVVPV---SGPNTLPV---IYDRGLIG-VYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC-c---eEEEeccc---CCCCcchh---hhhcccch-hccchhhccCCCCcchhheeh
Confidence 45889999999999999987753 2 22222121 01111110 01111111 112333434445689999987
Q ss_pred cCC-CCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 182 D~~-~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+.. +... .. -.-...+-+ +-|+|+|+|.+++..
T Consensus 434 ~~lfs~~~-~r---C~~~~illE-mDRILRP~G~~iiRD 467 (506)
T PF03141_consen 434 DGLFSLYK-DR---CEMEDILLE-MDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhc-cc---ccHHHHHHH-hHhhcCCCceEEEec
Confidence 743 2221 11 112455666 799999999999864
No 441
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.23 E-value=15 Score=32.13 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
....+||+.|+| -|..+..+++..+ .+|+++..+++..+.+++. ... .++..+-........+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GAD---------EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CCc---------EEeccCCcchHHhccCCCCEE
Confidence 345789999876 4445555666555 4799999999988887653 210 111110001111122468988
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+.-... ...... +.+.|+++|.++.-
T Consensus 230 i~~~~~------------~~~~~~-~~~~l~~~G~~i~~ 255 (330)
T cd08245 230 LVTVVS------------GAAAEA-ALGGLRRGGRIVLV 255 (330)
T ss_pred EECCCc------------HHHHHH-HHHhcccCCEEEEE
Confidence 743221 123455 56789999988754
No 442
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=83.09 E-value=9.3 Score=33.74 Aligned_cols=97 Identities=22% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD 177 (251)
....+||+.|+|. |..+..+++..+ .+|+++..+++..+.++++ ... .-+.....+..+.+.+ .++.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~-g~~------~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFAREL-GAD------DTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHh-CCC------EEecCcccCHHHHHHHHhCCCCCC
Confidence 3567999998653 456667777655 5788998888888887653 211 1111112232233322 234699
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+.... + .+.+.. +.+.|+++|.++..
T Consensus 230 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATG-----N-------PASMEE-AVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence 9986531 1 133455 56788899988753
No 443
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.96 E-value=6.1 Score=38.16 Aligned_cols=93 Identities=12% Similarity=0.187 Sum_probs=58.5
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCC-CceeE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~-~~fD~ 178 (251)
.+++++|+|.=+ +++.+.++ + .+++++|.|++.++.+++. ..+++++|+.+. +++.+ ++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-IPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 678999997544 33444333 3 4799999999999888752 367888998763 33322 68998
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+++...+... ....... .+.+.|+-.++...
T Consensus 485 viv~~~~~~~--------~~~iv~~--~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGYE--------AGEIVAS--AREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChHH--------HHHHHHH--HHHHCCCCeEEEEE
Confidence 8876554220 1122222 34456777777654
No 444
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.93 E-value=16 Score=26.86 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=68.2
Q ss_pred eEEEEecCchHHHH--HHHhcCCCcEE-EEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 105 TIFIMGGGEGSTAR--EILRHKTVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 105 ~VL~iG~G~G~~~~--~l~~~~~~~~v-~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
||.+||+|..+... .+.+..+..++ -.+|.+++-.+.+.+.+. +. ...|..+.+.. ...|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence 68999998775432 33444233454 478999988776654432 23 66778888764 47999999
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCCCCCCChHHHHHHHHHHHhhCC
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (251)
..+... .++. +.+.|+-|--+++.- |- ..+.+..+++.+..++.-.
T Consensus 69 ~tp~~~------------h~~~-~~~~l~~g~~v~~EK--P~-~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 69 ATPPSS------------HAEI-AKKALEAGKHVLVEK--PL-ALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp ESSGGG------------HHHH-HHHHHHTTSEEEEES--SS-SSSHHHHHHHHHHHHHHTS
T ss_pred ecCCcc------------hHHH-HHHHHHcCCEEEEEc--CC-cCCHHHHHHHHHHHHHhCC
Confidence 865321 1222 345566555566554 31 3467778888887776543
No 445
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.62 E-value=8.6 Score=32.65 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=47.4
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~~~-~~fD~ 178 (251)
++++++|+|.=+ +++.|.+. + ..|+.+|.|++.++...+- ..-...+++|+.+ .|++-+ +.+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 478999998543 45666554 2 4899999999998763321 1246777777754 444433 78999
Q ss_pred EEEcCC
Q 025534 179 IIGDLA 184 (251)
Q Consensus 179 Ii~D~~ 184 (251)
++....
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 998754
No 446
>PRK08328 hypothetical protein; Provisional
Probab=82.56 E-value=1.8 Score=36.89 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|||+ |+ ++..|++ .++.+++.+|-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 467899999985 43 3445555 4788999998664
No 447
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.55 E-value=11 Score=31.78 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=46.7
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~- 171 (251)
.++++|+.|+++|. +++.+++. + .+|..++.+++-.+...+.+... ..++.++..|..+ .+..
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFARE-G-AKVVVADRDAAGGEETVALIREA-----GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999986543 33444443 3 58999999987665544433221 2467777777643 2211
Q ss_pred --CCCceeEEEEcCC
Q 025534 172 --RKESYDVIIGDLA 184 (251)
Q Consensus 172 --~~~~fD~Ii~D~~ 184 (251)
.-.+.|+|+.++.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 1246899998864
No 448
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.46 E-value=5.3 Score=39.98 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=65.0
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHH
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~ 168 (251)
++|-+||+|+=+ ++..++.. + -.|+.+|.+++.++.++++.... ...+. -.+++.. .|. +-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-G-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-AG 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 689999998543 45555554 4 58999999999998877654211 00000 0123222 121 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ ...|+||-..++.. -..+++|++ +.+.++|+.+|+.|+.+
T Consensus 390 ~----~~aDlViEav~E~l-------~~K~~vf~~-l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 F----DNVDIVVEAVVENP-------KVKAAVLAE-VEQHVREDAILASNTST 430 (714)
T ss_pred h----cCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 1 46889998766422 124688999 79999999999998754
No 449
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.42 E-value=22 Score=31.31 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCcee
Q 025534 101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD 177 (251)
.+.++|++||+|+-+- +..+++ .+..+|+.++.+++-.+...+.+... .+.+.+.. .+..+. -..+|
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~-----~~~~~~~~~~~~~~~----~~~aD 194 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR-----FPAARATAGSDLAAA----LAAAD 194 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh-----CCCeEEEeccchHhh----hCCCC
Confidence 4568999999986543 333344 35678999999976655444333211 12233332 222111 24689
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
+||.-.+
T Consensus 195 iVInaTp 201 (284)
T PRK12549 195 GLVHATP 201 (284)
T ss_pred EEEECCc
Confidence 9887654
No 450
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.32 E-value=2.2 Score=39.39 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCeEEEEcchHHHHhcC-CCceeE-EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 156 PRLELVINDARAELESR-KESYDV-IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 156 ~rv~~~~~D~~~~l~~~-~~~fD~-Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
.+++++.++..++++.. ++++|. |++|..+ |. .+ -...+.++. +.+.++|||+++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm-~~---~~~~~~~~~-l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WM-DP---EQLNEEWQE-LARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hC-CH---HHHHHHHHH-HHHHhCCCCEEEEee
Confidence 79999999999999864 689995 5556654 21 22 113467787 799999999999876
No 451
>PRK08618 ornithine cyclodeaminase; Validated
Probab=82.18 E-value=36 Score=30.46 Aligned_cols=114 Identities=19% Similarity=0.307 Sum_probs=62.0
Q ss_pred cEEEEEecCceeEE-EEcCccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECC
Q 025534 59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID 135 (251)
Q Consensus 59 ~i~v~~~~~~g~~l-~ldg~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid 135 (251)
.+.+++... |+.+ .+||...+.-+..- - -.+. ...+..++.+++++||+|.=+- +..++...+..+|..++.+
T Consensus 86 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaa-~-sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 86 TVILSDFET-GEVLAILDGTYLTQIRTGA-L-SGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred EEEEEeCCC-CceEEEEccchhhhhhHHH-H-HHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 466666543 4433 56665543321110 0 1111 1223446778999999985542 2333334467899999999
Q ss_pred hHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025534 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (251)
Q Consensus 136 ~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~ 185 (251)
++-.+...+.+... + ..++. ...|..+.+ ...|+|++-.+.
T Consensus 162 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 162 FEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred HHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 88766544443211 0 11222 246665555 358999987653
No 452
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=82.11 E-value=4.8 Score=41.82 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=31.2
Q ss_pred cchhHHHHHHHhHhh--cCCCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECCh
Q 025534 84 DEFIYHESLVHPALL--HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 84 ~~~~y~e~l~~~~~~--~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~ 136 (251)
|+..|.+.+..+..- ..-...+||++|||+=+ ++..|.. .++.+++.+|-+.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~l-aGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVL-AGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCe
Confidence 445677665432211 11245789999996422 2333333 5788999999775
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.01 E-value=11 Score=33.60 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD 177 (251)
.++.+||+.|+|. |..+.++++..+..+|.+++.+++-.+.++++ ... .-+.....|..+.+.+ .+ +.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCC
Confidence 3467899997532 22344555555544899999999988888764 211 1111112233333322 22 4599
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+-.... .+.++. ..+.|+++|.++.-
T Consensus 244 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~ 271 (351)
T cd08233 244 VSFDCAGV------------QATLDT-AIDALRPRGTAVNV 271 (351)
T ss_pred EEEECCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 99865321 123455 46789999988764
No 454
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=81.88 E-value=10 Score=33.51 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred CccccccccchhHHHHHHHhHhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhchh
Q 025534 76 GKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (251)
Q Consensus 76 g~~q~~~~~~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (251)
|.+.-..-|..-+.+.|.....-.....++||++|.|+-+- +..|++. +..+|+.+..+++-.+...+.++
T Consensus 99 g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 99 GKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhh
Confidence 44433333433344445432111122468899999986653 4455554 56789999997766555544444
No 455
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=81.86 E-value=13 Score=35.07 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=27.2
Q ss_pred eEEEEecCchHHHHHHHh----c---CCCcEEEEEECChHHHHHHH
Q 025534 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEFCK 143 (251)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~a~ 143 (251)
||.+||+|+. .+..+.+ . -+..+|+.+|||++-++...
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~ 46 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA 46 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH
Confidence 6889999996 5544433 2 23578999999997776533
No 456
>PLN02702 L-idonate 5-dehydrogenase
Probab=81.78 E-value=16 Score=32.85 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE--EEcchHHHHh----cCCC
Q 025534 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE----SRKE 174 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~--~~~D~~~~l~----~~~~ 174 (251)
...+||++|+|. |..+..+++..+...|++++.++.-.+.++++ ... ..+.+ ...+..+.+. ...+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GAD------EIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEecCcccccHHHHHHHHhhhcCC
Confidence 467899997531 33445566665656789999999888888774 211 01111 1123323222 1235
Q ss_pred ceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 175 ~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
.+|+|+-.... + ..+.. ..+.|+++|.++..
T Consensus 254 ~~d~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGF-----N-------KTMST-ALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEE
Confidence 68988854221 1 23455 56789999988754
No 457
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.39 E-value=22 Score=30.67 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred CCCCeEEEEec--CchHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
..+.+||+.|+ +.|..+.++++..+ .+|+++..+++-.+.++++ +.. .+-....+..+.+.+.++.+|+
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~~-------~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GAD-------EVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCc-------EEEecCccHHHHHHHhCCCceE
Confidence 45689999986 45556677777765 5799999888887777542 211 1100012333333222457999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|+.... + ..+.. +.+.|+++|.++..
T Consensus 212 vl~~~~-----~--------~~~~~-~~~~l~~~g~~v~~ 237 (320)
T cd08243 212 VLELVG-----T--------ATLKD-SLRHLRPGGIVCMT 237 (320)
T ss_pred EEECCC-----h--------HHHHH-HHHHhccCCEEEEE
Confidence 984321 1 22444 46788899988753
No 458
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.36 E-value=13 Score=31.32 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-- 170 (251)
..+.||+.|+++|. +++.++++ + .+|..++.++.-.+...+.+... ..++.++..|..+. +.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQ-G-AHVIVSSRKLDGCQAVADAIVAA-----GGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45789999987664 34555554 4 58999999877665544433211 23455555554322 11
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
+.-.+.|+++..+.
T Consensus 80 ~~~~~~id~li~~ag 94 (252)
T PRK07035 80 RERHGRLDILVNNAA 94 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 11246899998774
No 459
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.36 E-value=19 Score=32.46 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCCeEEEEecCch-HHHHHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
.++.+||+.|+|.= .++..+++..+..+|++++.+++-.+.+++.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~ 231 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF 231 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 45688999986421 1344556665655899999999999988764
No 460
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.35 E-value=13 Score=30.89 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~- 171 (251)
+.+++|+.|+++|. ++..+++. + .+|+.++.++.-.+.+.+.+.. ...++.++..|..+. +..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~-G-~~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQK-G-AKLALIDLNQEKLEEAVAECGA-----LGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999975443 22333333 3 5799999998765554443321 134677777775321 111
Q ss_pred --CCCceeEEEEcCC
Q 025534 172 --RKESYDVIIGDLA 184 (251)
Q Consensus 172 --~~~~fD~Ii~D~~ 184 (251)
...+.|.||..+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246899998764
No 461
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.18 E-value=24 Score=31.42 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChHH-HHHHHhchhcccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025534 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~~~~-~D~~~~l~~~~~~fD~ 178 (251)
..++|+++|+|.=+. ....+...+..+|++++.+++- .++++++ + . ..+. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g--------~--~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G--------G--NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C--------C--eEEeHHHHHHHH----hcCCE
Confidence 578999999854332 1122222345689999999864 4566653 1 1 1221 2333333 35899
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCCC
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~p 222 (251)
||.-.+.+. + .+.++. +.+....++.+++....|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 998865332 1 233444 222233357788776544
No 462
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=81.14 E-value=12 Score=32.97 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.0
Q ss_pred CCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChH
Q 025534 101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE 137 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~ 137 (251)
.+.++||+||+|+-+-+ ..++. .+..+|+.+..+++
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCcc
Confidence 35679999999855433 22333 35679999999864
No 463
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.13 E-value=5.8 Score=34.33 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCc
Q 025534 117 AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLY 196 (251)
Q Consensus 117 ~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~D~~~~~~~~p~~~l~ 196 (251)
++.|.+.....+|+++|.++..++.|++. +. +.-...+ .+.+ ..+|+||+..|- -.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~---------~~~~~~~-~~~~----~~~DlvvlavP~---------~~ 57 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL-GI---------IDEASTD-IEAV----EDADLVVLAVPV---------SA 57 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TS---------SSEEESH-HHHG----GCCSEEEE-S-H---------HH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CC---------eeeccCC-HhHh----cCCCEEEEcCCH---------HH
Confidence 55666654456999999999999998764 11 1112223 3333 357999998652 12
Q ss_pred cHHHHHHHHcccCCCCcEEE
Q 025534 197 TKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 197 ~~ef~~~~~~~~L~pgG~l~ 216 (251)
..+++++ +...+++|++++
T Consensus 58 ~~~~l~~-~~~~~~~~~iv~ 76 (258)
T PF02153_consen 58 IEDVLEE-IAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHH-HHCGS-TTSEEE
T ss_pred HHHHHHH-hhhhcCCCcEEE
Confidence 4578888 788888877665
No 464
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.08 E-value=2 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=26.1
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCcEEEEEECCh
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (251)
...+||++|+|+ |. +++.|++. ++.+++.||-|.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCE
Confidence 367999999997 55 45666664 789999999764
No 465
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.06 E-value=22 Score=31.62 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=53.6
Q ss_pred CeEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHh--chhcccCCCCCCCeEEE-EcchHHHHhcCCCceeE
Q 025534 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKS--YLVVNKEAFSDPRLELV-INDARAELESRKESYDV 178 (251)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~--~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD~ 178 (251)
.+|-+||+|. |.. +..++.+ +..+|+.+|++++..+ ++. ..... .......++. .+|..+ + ..-|+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~~l~~-g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~----~~aDi 72 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-ELADLVLLDVVEGIPQ-GKALDMYEAS--PVGGFDTKVTGTNNYAD-T----ANSDI 72 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCCChhH-HHHHhhhhhh--hccCCCcEEEecCCHHH-h----CCCCE
Confidence 4789999986 433 3333343 3237999999877533 221 11100 0111122343 366443 2 35799
Q ss_pred EEEcCCCCCCCCcc-cCC--cc----HHHHHHHHcccCCCCcEEEEecCC
Q 025534 179 IIGDLADPIEGGPC-YKL--YT----KSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 179 Ii~D~~~~~~~~p~-~~l--~~----~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
|++-+..|...+.. ..+ .. .++.+. +.+. .|++++++-++|
T Consensus 73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~-I~~~-~p~~~iIv~tNP 120 (305)
T TIGR01763 73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGR-IMEH-SPNPIIVVVSNP 120 (305)
T ss_pred EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecCc
Confidence 99977644311110 001 11 234444 3444 588988765543
No 466
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.91 E-value=9.6 Score=33.59 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCCCeEEEEecCchHH---HHHHHhcCCCcEEEEEECCh----HHHHHHHhchhcccCCCCCCCeEEEEcchHH--HHhc
Q 025534 101 PNPKTIFIMGGGEGST---AREILRHKTVEKVVMCDIDE----EVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES 171 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~---~~~l~~~~~~~~v~~VEid~----~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~--~l~~ 171 (251)
.+.++||++|+| |.. +..+++ .+..+|+.++.++ ..-+++++. .. ..+.+.+...|..+ -+..
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~-~G~~~V~I~~R~~~~~~~a~~l~~~l-~~-----~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCAL-DGAKEITIFNIKDDFYERAEQTAEKI-KQ-----EVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHH-CCCCEEEEEeCCchHHHHHHHHHHHH-hh-----cCCCceeEEechhhhhHHHh
Confidence 356789999996 432 222333 3556799999985 333333322 11 11233343344322 1221
Q ss_pred CCCceeEEEEcCC
Q 025534 172 RKESYDVIIGDLA 184 (251)
Q Consensus 172 ~~~~fD~Ii~D~~ 184 (251)
.-..+|+||...+
T Consensus 196 ~~~~~DilINaTp 208 (289)
T PRK12548 196 EIASSDILVNATL 208 (289)
T ss_pred hhccCCEEEEeCC
Confidence 1246799998765
No 467
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.87 E-value=15 Score=30.51 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=44.8
Q ss_pred CCCeEEEEecCchHH----HHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh-
Q 025534 102 NPKTIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~----~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~- 170 (251)
+.+++|+.|+. |.+ ++.++++ + .+|.+++.+++-.+...+.... ...++.++..|..+. +.
T Consensus 5 ~~k~vlItG~s-g~iG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGAS-SGIGKATALAFAKA-G-WDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHH
Confidence 45688999864 444 4444443 3 4899999998765544333221 124677788776432 11
Q ss_pred --cCCCceeEEEEcCC
Q 025534 171 --SRKESYDVIIGDLA 184 (251)
Q Consensus 171 --~~~~~fD~Ii~D~~ 184 (251)
+.-.+.|+|+..+.
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 11246899998764
No 468
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=80.80 E-value=1.1 Score=39.43 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCCeEEEEecCchHHHHHHHhcCCCcEEEEEECChHHHH
Q 025534 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVE 140 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~ 140 (251)
-..++||++|||.|.-...+..+. ...+..-|.|.++++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 467999999999999888777653 468999999999985
No 469
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.74 E-value=18 Score=32.14 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=55.7
Q ss_pred eEEEEecCchHH--HHHHHhcCCCcEEEEEECChHHHHHHHhc---hhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
+|.+||+|.=+. +..+.+. + .+|+.++.+++.++..++. ..........+++++. .|..+.+ .+..|+|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli 75 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-K-ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI 75 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-C-CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence 589999986543 4444443 3 5799999999888766652 2211000011234433 4443333 2468999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcc-cCCCCcEEE
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFV 216 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~-~L~pgG~l~ 216 (251)
++-.++. ...+.++. ++. .++++..++
T Consensus 76 iiavks~---------~~~~~l~~-l~~~~l~~~~~vv 103 (326)
T PRK14620 76 ILAVPTQ---------QLRTICQQ-LQDCHLKKNTPIL 103 (326)
T ss_pred EEEeCHH---------HHHHHHHH-HHHhcCCCCCEEE
Confidence 9876532 23567777 676 788776444
No 470
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.70 E-value=7.1 Score=36.79 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=40.4
Q ss_pred CCCeEEEEecCchHH-HHHHHhcCCCcEEEEEECChH-HHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025534 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~-vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 179 (251)
.+++|+++|+|.-++ +..++...+ .+|+++|.++. ..+...+.+. ...++++.++... ....+|+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l~-------~~gv~~~~~~~~~----~~~~~D~V 82 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAILE-------ALGATVRLGPGPT----LPEDTDLV 82 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHHH-------HcCCEEEECCCcc----ccCCCCEE
Confidence 467999999985544 233333334 58999996653 2222222222 1246666655332 12468999
Q ss_pred EEcCC
Q 025534 180 IGDLA 184 (251)
Q Consensus 180 i~D~~ 184 (251)
+..+-
T Consensus 83 v~s~G 87 (480)
T PRK01438 83 VTSPG 87 (480)
T ss_pred EECCC
Confidence 98764
No 471
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.68 E-value=5.1 Score=36.46 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=48.2
Q ss_pred CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025534 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD 177 (251)
.++++||++|+++|. .+.+++++.+ ...+..-.+.+-++++++.=. +.-+.....|..+-+.+ +...||
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA-------d~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA-------DEVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCC-------cEeecCCCHHHHHHHHhhcCCCcc
Confidence 346789999998765 5678888765 456666788889998887521 11122222344443332 256799
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
+|+-...
T Consensus 228 vVlD~vg 234 (347)
T KOG1198|consen 228 VVLDCVG 234 (347)
T ss_pred EEEECCC
Confidence 9996554
No 472
>PLN02427 UDP-apiose/xylose synthase
Probab=80.62 E-value=7.4 Score=35.38 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCCeEEEEecCchHHHHHHHhc---CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH--HhcCCCce
Q 025534 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--l~~~~~~f 176 (251)
++++||+.|+ +|.++.++++. .+..+|++++.++.-++... ..... ...++++++.+|..+. +...-..+
T Consensus 13 ~~~~VlVTGg-tGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~---~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 13 KPLTICMIGA-GGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL---EPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred cCcEEEEECC-cchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh---ccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 4578999987 56666655542 12257999987654332211 11000 0125799999988653 22222358
Q ss_pred eEEEEcCC
Q 025534 177 DVIIGDLA 184 (251)
Q Consensus 177 D~Ii~D~~ 184 (251)
|+||.-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99998664
No 473
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.61 E-value=4.3 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=35.4
Q ss_pred CCCCeEEEEecCchHHH-HHHHhcCCCcEEEEEECChHHHHHHHhc
Q 025534 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSY 145 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (251)
.++..|.+.|+|+=+++ .+-++..++.+|.+||+|++=.+.|+++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 35678888888765544 4445666788999999999999999986
No 474
>PRK05867 short chain dehydrogenase; Provisional
Probab=80.54 E-value=11 Score=31.91 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=47.4
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-- 170 (251)
+.+.+|+.|+++|. +++.++++ + .+|..++.+++-.+...+.+... ..++..+..|..+. +.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~-G-~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA-G-AQVAIAARHLDALEKLADEIGTS-----GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 46789999987653 34555554 3 58999999987766555444321 24566777665432 21
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
+.-++.|+++.++.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 11257899998864
No 475
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=80.53 E-value=4.1 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=26.1
Q ss_pred EEecCch--HHHHHHH--hcCCCcEEEEEECChHHHHHHHhc--hhcc
Q 025534 108 IMGGGEG--STAREIL--RHKTVEKVVMCDIDEEVVEFCKSY--LVVN 149 (251)
Q Consensus 108 ~iG~G~G--~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~--~~~~ 149 (251)
|||+..| ......+ +..+..+|.++|.+|...+..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7899999 5555443 233447899999999999988887 5444
No 476
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.50 E-value=17 Score=30.66 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=45.9
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc-
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~- 171 (251)
+++++|+.|+++|. ++..++++ + .+|+.++.+++.++...+.+... ..++.++..|..+ .+..
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA-G-AHVLVNGRNAATLEAAVAALRAA-----GGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 56889999975543 33344443 4 58999999987665544433321 2457777766432 2221
Q ss_pred --CCCceeEEEEcCC
Q 025534 172 --RKESYDVIIGDLA 184 (251)
Q Consensus 172 --~~~~fD~Ii~D~~ 184 (251)
.-++.|.|+..+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 1246899998865
No 477
>PRK12829 short chain dehydrogenase; Provisional
Probab=80.48 E-value=16 Score=30.83 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=44.7
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH---------
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--------- 169 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l--------- 169 (251)
+.+++|+.|+.+|. ++..++++ + .+|+++..+++..+...+... ..++.++..|..+.-
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA-G-ARVHVCDVSEAALAATAARLP-------GAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHh-------cCceEEEEccCCCHHHHHHHHHHH
Confidence 56899999986443 23334443 3 479999998876654433221 125677777754321
Q ss_pred hcCCCceeEEEEcCC
Q 025534 170 ESRKESYDVIIGDLA 184 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~ 184 (251)
.+.-.+.|.|+..+.
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 111246899998875
No 478
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=80.38 E-value=27 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCchHHH--HHHHhcCCCcEEEEEECChHHHHHH
Q 025534 101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFC 142 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a 142 (251)
.++++||+||+|+-+-+ ..+++. +..+|+.++.+++-.+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDTSRAQAL 167 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHH
Confidence 34689999999866533 334443 567899999987544433
No 479
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.12 E-value=12 Score=31.35 Aligned_cols=76 Identities=20% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hhc-
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~~- 171 (251)
..++||+.|+++|. ++++++++ + .+|++++.++.-.+...+.+... ..++..+..|..+. +..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARA-G-ADVVLAARTAERLDEVAAEIDDL-----GRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHh-----CCceEEEecCCCCHHHHHHHHHHH
Confidence 45789999986554 34455554 3 58999999887655444333211 24677777776432 111
Q ss_pred --CCCceeEEEEcCC
Q 025534 172 --RKESYDVIIGDLA 184 (251)
Q Consensus 172 --~~~~fD~Ii~D~~ 184 (251)
.-++.|+|+.++.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1246899999874
No 480
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=79.95 E-value=16 Score=32.18 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=46.1
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-- 170 (251)
..++||+.|+.+|. +++.+++. + .+|+++..+++-.+.+.+.+.. ...++.++..|..+. +.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~-G-~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR-G-WHVIMACRNLKKAEAAAQELGI-----PPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHhhc-----cCCceEEEEecCCCHHHHHHHHHHH
Confidence 45789999876543 34444444 3 5899998887765544443321 124677777776432 21
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
....+.|++|.++.
T Consensus 78 ~~~~~~iD~li~nAg 92 (322)
T PRK07453 78 RALGKPLDALVCNAA 92 (322)
T ss_pred HHhCCCccEEEECCc
Confidence 12346899999874
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.91 E-value=6.9 Score=39.15 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=65.1
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcc------cCCCC-------CCCeEEEEcchHHH
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE 168 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~~~~~D~~~~ 168 (251)
++|.+||+|+=+ ++..++.. + -.|+.+|.+++.++.++++.... ...+. -.++++. .|. +-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G-VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 689999999743 45555554 4 58999999999998877654211 00000 0233332 232 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEecCC
Q 025534 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~~~ 221 (251)
+ ..-|+||-..++.. -..++.|++ +.+.++|+.+|+.|+.+
T Consensus 390 ~----~~aDlViEav~E~l-------~~K~~vf~~-l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 F----ERVDVVVEAVVENP-------KVKAAVLAE-VEQKVREDTILASNTST 430 (715)
T ss_pred h----cCCCEEEecccCcH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 1 46888887765422 123678898 79999999999988753
No 482
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.83 E-value=10 Score=33.66 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH---------HH
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------EL 169 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~---------~l 169 (251)
.++.||+=|+|+|. ++.+++++ + +++..+|++++-.+...+.+...+ ++..+..|.-+ -+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g-~~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-G-AKLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-C-CeEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHHHHHHHHHHH
Confidence 35679999999885 66777776 3 489999999988776666554321 45555444322 12
Q ss_pred hcCCCceeEEEEcCC
Q 025534 170 ESRKESYDVIIGDLA 184 (251)
Q Consensus 170 ~~~~~~fD~Ii~D~~ 184 (251)
++.-+..|+++.|+-
T Consensus 109 k~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAG 123 (300)
T ss_pred HHhcCCceEEEeccc
Confidence 223468999999874
No 483
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.82 E-value=7.8 Score=34.78 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHH
Q 025534 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEV 138 (251)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~v 138 (251)
+||++|+|+-+ ++..|+. .+..+++.+|.|.--
T Consensus 1 kVlIVGaGGlG~EiaKnLal-~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVL-TGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHH-hcCCeEEEEcCCCcc
Confidence 69999997433 3444444 467899999987543
No 484
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=79.80 E-value=30 Score=30.52 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fD~ 178 (251)
.+..+||+.|+|+ |..+..+++..+...++++.-+++..+.++++ ... .-+........+..... ...+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD------DTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC------EEecCccccHHHHHHHhCCCCCCE
Confidence 3457899997654 44556667766544599998888887777553 210 00111111112222222 245999
Q ss_pred EEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 179 Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
|+.... . ...+.. +.+.|+++|.++.-
T Consensus 231 vld~~g------~------~~~~~~-~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG------S------PATIEQ-ALALARPGGKVVLV 257 (343)
T ss_pred EEECCC------C------HHHHHH-HHHHhhcCCEEEEE
Confidence 985421 1 123455 56788899987754
No 485
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.70 E-value=29 Score=32.07 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=57.3
Q ss_pred eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhch-hcccCCC--------CCCCeEEEEcchHHHHhcCC
Q 025534 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAELESRK 173 (251)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~--------~~~rv~~~~~D~~~~l~~~~ 173 (251)
+|-+||+|.-+ ++..+++. + .+|+++|.+++.++..++-. +.....+ ...++++. .|..+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G-~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~---- 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-G-HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAI---- 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-C-CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHH----
Confidence 68899998544 44555543 3 47999999999888765421 1100000 01223322 3333333
Q ss_pred CceeEEEEcCCCCCCC-CcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 174 ~~fD~Ii~D~~~~~~~-~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+..|+||+..+.+... +....-+-.+..+. +.+.|++|-+++..+
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~-i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAET-IAKHLRKGATVVLES 120 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHH-HHHhcCCCCEEEEeC
Confidence 4589999988755321 11010112334455 567788876666544
No 486
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.68 E-value=9.9 Score=33.23 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCCeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025534 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (251)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 178 (251)
...++||++|+|+-+ ++..++. .+..+|+.+..+++-.+...+.+... ..+.+ ..+..+. -..+|+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~-~g~~~V~v~~R~~~~a~~l~~~~~~~------~~~~~-~~~~~~~----~~~~Di 188 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLD-LGVAEITIVNRTVERAEELAKLFGAL------GKAEL-DLELQEE----LADFDL 188 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhhhc------cceee-cccchhc----cccCCE
Confidence 456899999985322 2233333 34578999999987655444433211 11333 1121111 256999
Q ss_pred EEEcCCC
Q 025534 179 IIGDLAD 185 (251)
Q Consensus 179 Ii~D~~~ 185 (251)
||.-.+.
T Consensus 189 vInaTp~ 195 (278)
T PRK00258 189 IINATSA 195 (278)
T ss_pred EEECCcC
Confidence 9987663
No 487
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=79.61 E-value=9.7 Score=39.72 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=44.4
Q ss_pred CCCeEEEEecCc-hH-HHHHHHhcCCCc------------EEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH
Q 025534 102 NPKTIFIMGGGE-GS-TAREILRHKTVE------------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~------------~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~ 167 (251)
..++||+||+|- |. .+..+++.+... .|+++|++++-.+.+.+.++ .-.-+.+-..|..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~------~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE------NAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC------CCceEEeecCCHHH
Confidence 367999999973 33 445555554322 48999999876665443221 00113333445444
Q ss_pred HHhcCCCceeEEEEcCCC
Q 025534 168 ELESRKESYDVIIGDLAD 185 (251)
Q Consensus 168 ~l~~~~~~fD~Ii~D~~~ 185 (251)
..... ...|+|++-.|.
T Consensus 642 L~~~v-~~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKYV-SQVDVVISLLPA 658 (1042)
T ss_pred HHHhh-cCCCEEEECCCc
Confidence 43221 349999998774
No 488
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=79.60 E-value=5.7 Score=37.09 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=43.6
Q ss_pred eEEEEecCchHHHH-H---HHhc--CCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEE-EcchHHHHhcCCCcee
Q 025534 105 TIFIMGGGEGSTAR-E---ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (251)
Q Consensus 105 ~VL~iG~G~G~~~~-~---l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~-~~D~~~~l~~~~~~fD 177 (251)
+|.+||+|+-+.+. . ++.. ....+|..+|+|++.++...+........ .....++. ..|..+-+ ...|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal----~~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE-LGAPLKIEATTDRREAL----DGAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHh----cCCC
Confidence 68899999944432 2 3321 12248999999999888765543211000 11223443 56655444 3579
Q ss_pred EEEEcCC
Q 025534 178 VIIGDLA 184 (251)
Q Consensus 178 ~Ii~D~~ 184 (251)
+|+...+
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 9988775
No 489
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.56 E-value=20 Score=31.78 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=53.5
Q ss_pred CCCCeEEEEecCc-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025534 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (251)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD 177 (251)
.++.+||+.|+|+ |..+..+++..+..+|.+++-+++-.+.++++ ... .-+.....+.. .+.+ ..+.+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~-~~~~~~~~~~vd 233 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GAD------VVINPREEDVV-EVKSVTDGTGVD 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Ccc------eeeCcccccHH-HHHHHcCCCCCC
Confidence 3567899976543 33455566665544688887777777776653 211 11111112222 2221 235799
Q ss_pred EEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+|+..... .+.... +.+.|+++|.++..
T Consensus 234 ~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 261 (341)
T cd05281 234 VVLEMSGN------------PKAIEQ-GLKALTPGGRVSIL 261 (341)
T ss_pred EEEECCCC------------HHHHHH-HHHHhccCCEEEEE
Confidence 99865421 123445 46788899988754
No 490
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=79.53 E-value=7.4 Score=32.46 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.3
Q ss_pred HhhcCCCCCeEEEEecCchHH--HHHHHhcCCCcEEEEEEC
Q 025534 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI 134 (251)
Q Consensus 96 ~~~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEi 134 (251)
|+......++||++|+|.=+. +..|++. + .+|+.|+.
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~-g-a~V~VIs~ 41 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY-G-AHIVVISP 41 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEcC
Confidence 555556789999999986554 3445554 3 58888854
No 491
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.35 E-value=21 Score=31.10 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=53.3
Q ss_pred eEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEE---EEcchHHHHhcCCCceeEE
Q 025534 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL---VINDARAELESRKESYDVI 179 (251)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~---~~~D~~~~l~~~~~~fD~I 179 (251)
+|++||+|.-+ ++..+.+. + .+|+.++.+++.++..++. ...- .+..... ...|.. . .+.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~----~-~~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-G-HDVTLVARRGAHLDALNEN-GLRL---EDGEITVPVLAADDPA----E-LGPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHHc-CCcc---cCCceeecccCCCChh----H-cCCCCEE
Confidence 68999998654 34444443 3 4899999988777766543 1110 0011110 011211 1 1579999
Q ss_pred EEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEE
Q 025534 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (251)
Q Consensus 180 i~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~ 217 (251)
++-.... ...+.++. ++..+.++..++.
T Consensus 71 ila~k~~---------~~~~~~~~-l~~~l~~~~~iv~ 98 (304)
T PRK06522 71 ILAVKAY---------QLPAALPS-LAPLLGPDTPVLF 98 (304)
T ss_pred EEecccc---------cHHHHHHH-HhhhcCCCCEEEE
Confidence 9875421 23577787 6888888776654
No 492
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.28 E-value=2.9 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCeEEEEecCc-hHH-HHHHHhcCCCcEEEEEECChHH
Q 025534 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEV 138 (251)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~v 138 (251)
...+||++|+|+ |+. +..|++ .++.+++.+|-|.--
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAA-AGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCccc
Confidence 457899999974 443 444444 578899999887543
No 493
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.22 E-value=14 Score=31.18 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCCeEEEEecCchHHHHH----HHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH---------
Q 025534 102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--------- 168 (251)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~----l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~--------- 168 (251)
+.+++|+.|+. |.++.. ++++ + .+|+.++.++.-.+...+.+... ..++.++..|..+.
T Consensus 11 ~~k~ilItGa~-g~IG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTGGS-RGLGLQIAEALGEA-G-ARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHH
Confidence 45789999864 444444 4443 3 48999999887666555443211 24566777776531
Q ss_pred HhcCCCceeEEEEcCC
Q 025534 169 LESRKESYDVIIGDLA 184 (251)
Q Consensus 169 l~~~~~~fD~Ii~D~~ 184 (251)
+.+...+.|.|+..+.
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1111246899999864
No 494
>PRK07478 short chain dehydrogenase; Provisional
Probab=79.22 E-value=17 Score=30.58 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=46.0
Q ss_pred CCCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHH------Hh--
Q 025534 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (251)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~------l~-- 170 (251)
..+.+|+.|+++|. +++.+++. + .+|..+..+++-.+...+.+... ..++.++..|..+. ++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFARE-G-AKVVVGARRQAELDQLVAEIRAE-----GGEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35689988887553 34455543 3 58999998887666554443321 24567777775332 11
Q ss_pred -cCCCceeEEEEcCC
Q 025534 171 -SRKESYDVIIGDLA 184 (251)
Q Consensus 171 -~~~~~fD~Ii~D~~ 184 (251)
+.-++.|++|.++.
T Consensus 78 ~~~~~~id~li~~ag 92 (254)
T PRK07478 78 VERFGGLDIAFNNAG 92 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 12247899998874
No 495
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.22 E-value=11 Score=31.98 Aligned_cols=72 Identities=22% Similarity=0.152 Sum_probs=45.2
Q ss_pred CeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHH------hcC--
Q 025534 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------ESR-- 172 (251)
Q Consensus 104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l------~~~-- 172 (251)
+++|+.|+++|. ++..+++. + .+|..++.+++-++...+... ..++.++..|..+.- ...
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-G-WRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 568999886543 34444443 3 589999998887665544322 246777777765421 111
Q ss_pred --CCceeEEEEcCC
Q 025534 173 --KESYDVIIGDLA 184 (251)
Q Consensus 173 --~~~fD~Ii~D~~ 184 (251)
.++.|+++..+.
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 356899998874
No 496
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.11 E-value=22 Score=35.57 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=52.6
Q ss_pred CeEEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025534 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (251)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 181 (251)
++|.+||+|.=+ ++..+.+.....+|+++|.+++-++.+++. ... + -...|..+.+ +..|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~-----~----~~~~~~~~~~----~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVI-----D----RGEEDLAEAV----SGADVIVL 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCC-----C----cccCCHHHHh----cCCCEEEE
Confidence 689999987533 344444432124799999999887776653 110 0 0112333333 35799998
Q ss_pred cCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEE
Q 025534 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (251)
Q Consensus 182 D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~ 216 (251)
..+.. ...+.++. ++..++++-+++
T Consensus 70 avp~~---------~~~~vl~~-l~~~~~~~~ii~ 94 (735)
T PRK14806 70 AVPVL---------AMEKVLAD-LKPLLSEHAIVT 94 (735)
T ss_pred CCCHH---------HHHHHHHH-HHHhcCCCcEEE
Confidence 76521 13567777 677787765443
No 497
>PRK08324 short chain dehydrogenase; Validated
Probab=79.09 E-value=29 Score=34.40 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCeEEEEecCchH---HHHHHHhcCCCcEEEEEECChHHHHHHHhchhcccCCCCCCCeEEEEcchHH------HHhc--
Q 025534 103 PKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-- 171 (251)
Q Consensus 103 ~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~~~~~D~~~------~l~~-- 171 (251)
++.||+.|+++|. +++.++++ + .+|++++.++.-.+.+.+.+.. ..++.++..|..+ .+..
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~-G-a~Vvl~~r~~~~~~~~~~~l~~------~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAE-G-ACVVLADLDEEAAEAAAAELGG------PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC-c-CEEEEEeCCHHHHHHHHHHHhc------cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678999875443 33444443 4 5899999998776655543321 1356677666532 1211
Q ss_pred -CCCceeEEEEcCC
Q 025534 172 -RKESYDVIIGDLA 184 (251)
Q Consensus 172 -~~~~fD~Ii~D~~ 184 (251)
..+..|+||.++.
T Consensus 494 ~~~g~iDvvI~~AG 507 (681)
T PRK08324 494 LAFGGVDIVVSNAG 507 (681)
T ss_pred HHcCCCCEEEECCC
Confidence 1246899998874
No 498
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=79.08 E-value=11 Score=29.30 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=52.5
Q ss_pred EEEEecCchH--HHHHHHhcCCCcEEEEEECChHHHHHHHhc-hhcccCCCCCCCeE--EEEcchHHHHhcCCCceeEEE
Q 025534 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLE--LVINDARAELESRKESYDVII 180 (251)
Q Consensus 106 VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~--~~~~D~~~~l~~~~~~fD~Ii 180 (251)
|+++|+|.=+ ++..|.+ .+ .+|+.+.-.+ -.+..++. +...... .+..+. ....+. ....++||+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g-~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AG-HDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAP----SADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TT-CEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSH----GHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHH-CC-CceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcc----hhccCCCcEEE
Confidence 6788887533 2344444 33 5899999988 55544432 2222110 011111 111111 11247899999
Q ss_pred EcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEe
Q 025534 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (251)
Q Consensus 181 ~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~ 218 (251)
+-.- .....+.++. +++.+.++..+++-
T Consensus 73 v~vK---------a~~~~~~l~~-l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 73 VAVK---------AYQLEQALQS-LKPYLDPNTTIVSL 100 (151)
T ss_dssp E-SS---------GGGHHHHHHH-HCTGEETTEEEEEE
T ss_pred EEec---------ccchHHHHHH-HhhccCCCcEEEEE
Confidence 9742 1235678888 79999999766654
No 499
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=79.05 E-value=5.7 Score=34.14 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCeEEEEecC-chHHHHHHHhcCCCcEEEEEECChHHHHHHH
Q 025534 103 PKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCK 143 (251)
Q Consensus 103 ~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~ 143 (251)
-+++|++|.- +|......+.. .. +|+.||+.|.+.++..
T Consensus 42 ~k~~lI~G~YltG~~iA~~L~~-~~-eV~lvDI~p~lk~ll~ 81 (252)
T PF06690_consen 42 FKQALIFGAYLTGNFIASALSK-KC-EVTLVDIHPHLKELLN 81 (252)
T ss_pred cceEEEEEEEeehHHHHHHhcc-Cc-eEEEEeCcHHHHHHhc
Confidence 3589999974 45544444443 23 9999999999988764
No 500
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=79.04 E-value=18 Score=34.46 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred CeEEEEecC--chHHHHHHHhcCCCcEEEEEECChHHHHHHHhchh--------cccCCCC-CCCeEEEEcchHHHHhcC
Q 025534 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV--------VNKEAFS-DPRLELVINDARAELESR 172 (251)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~--------~~~~~~~-~~rv~~~~~D~~~~l~~~ 172 (251)
++|-+||+| ++.++..+++. + .+|++.|.+++.++..++... +...... ..++++ ..|..+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G-~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~-~~~~~ea~--- 78 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-G-IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF-CASLAEAV--- 78 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe-eCCHHHHh---
Confidence 479999998 44566666665 3 489999999998875433211 0000000 012332 23433333
Q ss_pred CCceeEEEEcCCCCCCCCcccCCccHHHHHHHHcccCCCCcEEEEec
Q 025534 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (251)
Q Consensus 173 ~~~fD~Ii~D~~~~~~~~p~~~l~~~ef~~~~~~~~L~pgG~l~~~~ 219 (251)
+..|+|+...++.. -...+.|+. +...++|+-++..++
T Consensus 79 -~~aD~Vieavpe~~-------~vk~~l~~~-l~~~~~~~~iI~SsT 116 (495)
T PRK07531 79 -AGADWIQESVPERL-------DLKRRVLAE-IDAAARPDALIGSST 116 (495)
T ss_pred -cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcC
Confidence 45799998876432 012456666 566677765555444
Done!