BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025535
         (251 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
           OS=Dictyostelium discoideum GN=scsC PE=3 SV=1
          Length = 445

 Score = 38.5 bits (88), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 82  GNTNQNPSGDKDADNLLKI-ETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPR 140
           GN  + P   ++A+ + ++  T  +V      +GG   G+F + + GGVQ  +SA  + +
Sbjct: 56  GNVAETP---EEAEKIAEVMNTQDLVVKAQVLAGGRGKGIFTSGLKGGVQLCSSAEDVKK 112

Query: 141 PA-------LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSP 193
            A       L  +   E  +  H   V  R   R+E Y F  L+D      G P+   SP
Sbjct: 113 FASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKEMY-FAILMDRKA---GGPVMVASP 168


>sp|Q4G163|FBX43_HUMAN F-box only protein 43 OS=Homo sapiens GN=FBXO43 PE=1 SV=3
          Length = 708

 Score = 37.0 bits (84), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 1   MESVSSSVLN--KPLPSPSYSFAKSSN---QRTGSLKFSESSRCAALGLRLRIHAQAREV 55
           +ES  S V+N  K +PS +  F++++N     T +LK  E + C+   LRL    Q    
Sbjct: 176 LESSISQVINLEKNIPSSASGFSRANNFSPLVTSTLKTEEVTSCSQ-KLRLNFSQQKTST 234

Query: 56  PNEGEDDKPSDNGIGSAFG-DAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPH-----G 109
            ++ +DD        S F  + +S  QGN  ++      +D+ L I   +  P       
Sbjct: 235 IDDSKDD-------CSLFEVECISPIQGNNFKDSITHDFSDSSLCINDENACPELLGSSV 287

Query: 110 SGTSGGTRAGLFRTPISGGV 129
           SGT+ GT   +F TPIS  V
Sbjct: 288 SGTTCGTDEDIFVTPISNLV 307


>sp|O80795|Y1652_ARATH Probable inactive receptor-like protein kinase At1g65250
           OS=Arabidopsis thaliana GN=At1g65250 PE=2 SV=1
          Length = 372

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 32  KFSESSRC---AALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNP 88
           + SE  RC   A L L LR    + EVP   E  K  +    S F D+ SLS G T  + 
Sbjct: 301 QISEQERCQMKAFLKLSLRCTGPSEEVPTMVEVAKELNKIQRSLFNDSSSLSSGQTQLDS 360

Query: 89  SGD 91
           + D
Sbjct: 361 AQD 363


>sp|Q8CDC7|ZBTB9_MOUSE Zinc finger and BTB domain-containing protein 9 OS=Mus musculus
           GN=Zbtb9 PE=2 SV=1
          Length = 459

 Score = 31.2 bits (69), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 115 GTRAGLFRTP----ISGGVQSATSAHGLPRPAL 143
           G+ A LF+TP    +SGGV  A  +H LP PAL
Sbjct: 218 GSAAPLFQTPQPERVSGGVSQACGSHPLPTPAL 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,448,559
Number of Sequences: 539616
Number of extensions: 4298235
Number of successful extensions: 9181
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9176
Number of HSP's gapped (non-prelim): 21
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)