Query 025535
Match_columns 251
No_of_seqs 142 out of 754
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 99.8 4E-21 8.6E-26 163.7 10.0 103 137-241 2-118 (170)
2 PF01243 Pyridox_oxidase: Pyri 99.6 1.1E-14 2.5E-19 107.2 10.0 87 142-237 2-89 (89)
3 KOG3374 Cellular repressor of 99.5 5.8E-14 1.2E-18 122.8 8.0 107 134-242 37-157 (210)
4 TIGR03668 Rv0121_F420 PPOX cla 99.5 5.4E-13 1.2E-17 111.4 12.3 89 143-237 3-103 (141)
5 TIGR03666 Rv2061_F420 PPOX cla 99.4 4.1E-12 9E-17 104.4 11.0 83 147-239 7-89 (132)
6 TIGR03667 Rv3369 PPOX class pr 99.4 8.8E-12 1.9E-16 101.4 11.8 87 141-237 3-89 (130)
7 PRK03467 hypothetical protein; 99.3 4.1E-11 8.8E-16 101.4 12.1 100 140-246 5-105 (144)
8 TIGR03618 Rv1155_F420 PPOX cla 99.2 1.1E-10 2.3E-15 90.8 10.3 73 156-237 1-74 (117)
9 COG3467 Predicted flavin-nucle 98.9 2.4E-08 5.2E-13 85.6 12.2 96 138-241 9-112 (166)
10 PF12900 Pyridox_ox_2: Pyridox 98.9 5E-09 1.1E-13 85.5 7.7 89 142-239 2-99 (143)
11 PRK05679 pyridoxamine 5'-phosp 98.9 1.6E-08 3.6E-13 88.0 10.0 82 144-236 19-101 (195)
12 COG0748 HugZ Putative heme iro 98.8 4.1E-10 9E-15 102.5 -1.4 92 142-239 6-98 (245)
13 COG3871 Uncharacterized stress 98.3 3.5E-06 7.7E-11 71.8 9.5 91 141-241 6-97 (145)
14 PRK06733 hypothetical protein; 98.3 5.2E-06 1.1E-10 71.1 10.4 85 139-235 7-93 (151)
15 TIGR00558 pdxH pyridoxamine-ph 98.3 4.4E-06 9.4E-11 74.4 10.3 77 150-236 47-123 (217)
16 COG0748 HugZ Putative heme iro 98.0 3.8E-07 8.2E-12 83.3 -2.8 92 137-235 79-173 (245)
17 PLN03049 pyridoxine (pyridoxam 98.0 4.9E-05 1.1E-09 74.7 10.8 77 149-236 286-363 (462)
18 COG0259 PdxH Pyridoxamine-phos 97.9 3.7E-05 7.9E-10 69.1 8.3 80 149-239 43-123 (214)
19 COG3787 Uncharacterized protei 97.9 0.00011 2.4E-09 62.2 9.1 97 143-246 3-100 (145)
20 PLN02918 pyridoxine (pyridoxam 97.4 0.00088 1.9E-08 67.5 9.4 76 150-236 369-445 (544)
21 PF04299 FMN_bind_2: Putative 97.2 0.0028 6.1E-08 54.8 9.8 94 139-239 9-123 (169)
22 TIGR00026 hi_GC_TIGR00026 deaz 97.2 0.0037 7.9E-08 50.9 9.4 72 153-240 8-84 (113)
23 COG5015 Uncharacterized conser 97.1 0.0033 7.2E-08 52.8 8.9 83 144-238 3-85 (132)
24 KOG2586 Pyridoxamine-phosphate 96.9 0.0014 3.1E-08 59.2 5.3 78 151-239 55-134 (228)
25 PF04075 DUF385: Domain of unk 96.7 0.0042 9.1E-08 51.6 5.8 71 153-239 26-101 (132)
26 PF12766 Pyridox_oxase_2: Pyri 95.6 0.098 2.1E-06 41.8 8.5 76 149-233 17-99 (100)
27 COG2808 PaiB Transcriptional r 95.4 0.12 2.5E-06 46.8 9.1 93 138-237 8-121 (209)
28 COG3576 Predicted flavin-nucle 91.8 0.51 1.1E-05 41.2 6.4 67 143-215 32-101 (173)
29 PF04289 DUF447: Protein of un 67.4 15 0.00032 31.8 5.7 52 155-214 3-54 (177)
30 PF08922 DUF1905: Domain of un 57.0 25 0.00054 26.7 4.7 64 138-211 15-80 (80)
31 COG2075 RPL24A Ribosomal prote 29.0 67 0.0014 24.5 3.0 35 171-206 13-47 (66)
32 COG1853 Conserved protein/doma 27.4 1.3E+02 0.0028 25.5 4.9 61 151-215 17-77 (176)
33 PF01613 Flavin_Reduct: Flavin 26.8 98 0.0021 25.0 3.9 54 154-215 8-65 (154)
34 PRK14891 50S ribosomal protein 25.3 54 0.0012 28.0 2.2 31 175-206 18-48 (131)
35 cd00472 Ribosomal_L24e_L24 Rib 22.7 83 0.0018 22.8 2.4 30 176-206 18-47 (54)
36 PRK00807 50S ribosomal protein 21.4 92 0.002 22.2 2.4 28 178-206 18-45 (52)
37 PF05026 DCP2: Dcp2, box A dom 20.6 41 0.00088 26.4 0.5 12 238-249 30-41 (85)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.85 E-value=4e-21 Score=163.72 Aligned_cols=103 Identities=41% Similarity=0.643 Sum_probs=75.1
Q ss_pred CCCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeE----ECCCCCeEEEecCCchhhhhhhcCCceEEEEE
Q 025535 137 GLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQ 212 (251)
Q Consensus 137 ~~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa----~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~ 212 (251)
+.+..++.||+|++.+++|+|+|+++. ++.+|+|++++|.|+ .+.+|+|||++|+++.|++||++||||||+|.
T Consensus 2 ~~~~aA~~AR~Ll~~~~~g~LsTls~~--~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~ 79 (170)
T PF13883_consen 2 TREEAAELARTLLHQSRWGTLSTLSTQ--KDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTIS 79 (170)
T ss_dssp -TT-HHHHHHHHHHH-SEEEEEEE--S--GGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEE
T ss_pred ChHHHHHHHHHHHhhCCEEEEEeccCC--CCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEe
Confidence 346788999999999999999999851 246999999999999 78889999999999999999999999999999
Q ss_pred cCCC--------CC--ccccEEEEEEEEEeCCCchHHHH
Q 025535 213 IPGW--------SG--LSNARVTIFGDIFPLPEHQQVVI 241 (251)
Q Consensus 213 e~e~--------dp--~a~aRVTL~G~a~~Vedeeee~a 241 (251)
+.+. |+ ++++||||+|++++|++++.+.+
T Consensus 80 ~~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a 118 (170)
T PF13883_consen 80 EPQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAA 118 (170)
T ss_dssp GGGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHH
T ss_pred cCCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHH
Confidence 9874 23 37999999999999997764444
No 2
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.59 E-value=1.1e-14 Score=107.20 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCC-CeEEEecCCchhhhhhhcCCceEEEEEcCCCCCcc
Q 025535 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMG-HPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLS 220 (251)
Q Consensus 142 ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG-~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a 220 (251)
.+++++++++.++++|||++ .+|.|++++++|..+.+. .++|.+...+.|++||++||+|+|++.+++ ..
T Consensus 2 ~~~~~~~l~~~~~~~laTv~------~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~---~~ 72 (89)
T PF01243_consen 2 TEEIREFLEESKYCVLATVD------EDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE---GT 72 (89)
T ss_dssp HHHHHHHHHSTSEEEEEEEE------TTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT---TT
T ss_pred cHHHHHHhcCCCEEEEEEEC------CCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC---cC
Confidence 46899999999999999998 599999999999987554 588999999999999999999999999988 33
Q ss_pred ccEEEEEEEEEeCCCch
Q 025535 221 NARVTIFGDIFPLPEHQ 237 (251)
Q Consensus 221 ~aRVTL~G~a~~Vedee 237 (251)
..++++.|+|+.++++|
T Consensus 73 ~~~v~~~G~a~~~~d~E 89 (89)
T PF01243_consen 73 RRGVRVSGTAEILTDEE 89 (89)
T ss_dssp TEEEEEEEEEEEESHHH
T ss_pred ceEEEEEEEEEEEcCCC
Confidence 46999999999998764
No 3
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.50 E-value=5.8e-14 Score=122.76 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=93.9
Q ss_pred ccCCCCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEE----CCCCCeEEEecCCchhhhhhhcCCceEE
Q 025535 134 SAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAP----DSMGHPIFSFSPLAIHTRNLLADPRCTL 209 (251)
Q Consensus 134 ~~~~~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~----D~dG~pif~vS~lA~HTrNL~aDPRVSL 209 (251)
.+.++...++.||.|+++++||+|+|++++ ++..|+||+.++.+.. .+.|+||||++++....+|+++||+++|
T Consensus 37 ~~p~r~d~A~iAR~lvh~~~Wgal~TlSt~--e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL 114 (210)
T KOG3374|consen 37 KRPQRLDHAKIARDLVHRANWGALGTLSTN--ERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATL 114 (210)
T ss_pred CCCchhhHHHHHHHHhhhcccceeeeeeec--ccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeE
Confidence 344667888999999999999999999974 5789999999999985 2468999999999999999999999999
Q ss_pred EEEcCC--------CCC--ccccEEEEEEEEEeCCCchHHHHH
Q 025535 210 VVQIPG--------WSG--LSNARVTIFGDIFPLPEHQQVVIY 242 (251)
Q Consensus 210 tV~e~e--------~dp--~a~aRVTL~G~a~~Vedeeee~ar 242 (251)
++.+.+ .|| ..|.+++|+|++.+++..+++.+.
T Consensus 115 ~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~ 157 (210)
T KOG3374|consen 115 LFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQP 157 (210)
T ss_pred EeeccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhh
Confidence 998886 255 589999999999999998887665
No 4
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.48 E-value=5.4e-13 Score=111.37 Aligned_cols=89 Identities=26% Similarity=0.178 Sum_probs=72.2
Q ss_pred HHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEEC------CCCCeEEEe------cCCchhhhhhhcCCceEEE
Q 025535 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPD------SMGHPIFSF------SPLAIHTRNLLADPRCTLV 210 (251)
Q Consensus 143 e~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D------~dG~pif~v------S~lA~HTrNL~aDPRVSLt 210 (251)
++++++|++.++++|||++ .||.|+.++|+|+++ +++.+||.+ .+...|.+||++||||||+
T Consensus 3 ~e~~~~L~~~~~~~LaTv~------~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~ 76 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS------PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLL 76 (141)
T ss_pred HHHHHHHccCCEEEEEEEC------CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEE
Confidence 5789999999999999998 599999999999998 356566553 3556889999999999999
Q ss_pred EEcCCCCCccccEEEEEEEEEeCCCch
Q 025535 211 VQIPGWSGLSNARVTIFGDIFPLPEHQ 237 (251)
Q Consensus 211 V~e~e~dp~a~aRVTL~G~a~~Vedee 237 (251)
|...+........|++.|+++.+.+++
T Consensus 77 v~~~~~~~~~~~~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 77 VDRYDDDWTRLWWVRADGRAEILRPGE 103 (141)
T ss_pred EecCCCCccceEEEEEEEEEEEecCCc
Confidence 875442222234699999999998887
No 5
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.38 E-value=4.1e-12 Score=104.45 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=71.5
Q ss_pred HHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEE
Q 025535 147 NLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTI 226 (251)
Q Consensus 147 ~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL 226 (251)
..|+++++++|+|+. .||.|+.++|+|+.+ +|.+||+.+....|.+||++||+|+|++.+....+ ..+++
T Consensus 7 ~~L~~~~~~~LaT~~------~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~~---~~v~v 76 (132)
T TIGR03666 7 ADLARARYALLTTFR------KDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGRP---TGPVV 76 (132)
T ss_pred HHhccCcEEEEEEEC------CCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCCE---eEEEE
Confidence 678899999999997 699999999999997 57899999999999999999999999988765322 36999
Q ss_pred EEEEEeCCCchHH
Q 025535 227 FGDIFPLPEHQQV 239 (251)
Q Consensus 227 ~G~a~~Vedeeee 239 (251)
.|+|+.+++++..
T Consensus 77 ~G~A~~v~~~e~~ 89 (132)
T TIGR03666 77 PGRARILDGAETA 89 (132)
T ss_pred EEEEEEEcchhHH
Confidence 9999999655544
No 6
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.36 E-value=8.8e-12 Score=101.41 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=76.1
Q ss_pred cHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCcc
Q 025535 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLS 220 (251)
Q Consensus 141 ~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a 220 (251)
..++++++|++.++++|||++ .||.|+..+|+|..+ +|.++|+....+.|.+||++||+|+|++..++..
T Consensus 3 ~~~~~~~~L~~~~~~~LaT~~------~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~--- 72 (130)
T TIGR03667 3 FTAKVARRLREESIVWLTTVR------RSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRG--- 72 (130)
T ss_pred CCHHHHHHhcCCCeEEEEEEC------CCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCC---
Confidence 457899999999999999998 599999999999987 7888899988899999999999999999876532
Q ss_pred ccEEEEEEEEEeCCCch
Q 025535 221 NARVTIFGDIFPLPEHQ 237 (251)
Q Consensus 221 ~aRVTL~G~a~~Vedee 237 (251)
...+.|.|+++.+++.+
T Consensus 73 ~~~v~v~G~a~i~~d~~ 89 (130)
T TIGR03667 73 GDVVVFTGTAEVVADAP 89 (130)
T ss_pred ceEEEEEEEEEEeCCch
Confidence 13689999999998763
No 7
>PRK03467 hypothetical protein; Provisional
Probab=99.29 E-value=4.1e-11 Score=101.45 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=88.1
Q ss_pred CcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCC-eEEEecCCchhhhhhhcCCceEEEEEcCCCCC
Q 025535 140 RPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGH-PIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG 218 (251)
Q Consensus 140 ~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~-pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp 218 (251)
...+.+.++|..++..+|||.. ++.||+..+.|+.|+++. +||..++.++|.+|+.+||+|+.+|..+..+.
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~-------~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v 77 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQ-------EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTV 77 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEc-------CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcch
Confidence 3456899999999999999997 688999999999987644 66777888999999999999999999998777
Q ss_pred ccccEEEEEEEEEeCCCchHHHHHHhcc
Q 025535 219 LSNARVTIFGDIFPLPEHQQVVIYFFLI 246 (251)
Q Consensus 219 ~a~aRVTL~G~a~~Vedeeee~ar~~yi 246 (251)
.....|++.|++..+++++++.|+-+|.
T Consensus 78 ~~I~GvQ~~G~~~~l~~~e~~~Ar~~Y~ 105 (144)
T PRK03467 78 ALIRGVQFKGEIRRLEGEESDAARKRYN 105 (144)
T ss_pred hhceEEEEEEEEEecChhHHHHHHHHHH
Confidence 7788999999999999998888888774
No 8
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.22 E-value=1.1e-10 Score=90.82 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=62.2
Q ss_pred EEEeecCCcCCCCCCcceeEEEeeEECCC-CCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEEEEEEEeCC
Q 025535 156 HLCTVMSRMHHRREGYPFGSLVDFAPDSM-GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLP 234 (251)
Q Consensus 156 vLATls~~~~~~~DG~P~gS~V~Fa~D~d-G~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~G~a~~Ve 234 (251)
+|||++ .+|.|+.++|+|+.+.+ +.++|+++..+.|++||++||+|+|++.+++. .. .+++++|+++.++
T Consensus 1 ~LaTv~------~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~-~~--~~v~i~G~a~~v~ 71 (117)
T TIGR03618 1 VLATIR------ADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDF-PY--RYVEVEGTAELVE 71 (117)
T ss_pred CEEEEC------CCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCC-Cc--cEEEEEEEEEEec
Confidence 589998 58999999999998543 45888888999999999999999999999873 22 4899999999998
Q ss_pred Cch
Q 025535 235 EHQ 237 (251)
Q Consensus 235 dee 237 (251)
+++
T Consensus 72 d~~ 74 (117)
T TIGR03618 72 DPD 74 (117)
T ss_pred CCc
Confidence 754
No 9
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=98.90 E-value=2.4e-08 Score=85.63 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC-
Q 025535 138 LPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW- 216 (251)
Q Consensus 138 ~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~- 216 (251)
.....+++..+|+.+.+++||+.. +|.||+.++.|+.+ ++.+||+.+...+|..+|.++|.|+|.|.+...
T Consensus 9 ~~~~~~~i~~~l~~~~~~~La~~~-------~~~PyivP~~y~~~-~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~ 80 (166)
T COG3467 9 EEMSDEEIDAILAAGRVGRLAFAG-------DGQPYVVPLNYGYE-GGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGL 80 (166)
T ss_pred hhCCHHHHHHHHhhCCEEEEEEcC-------CCCcEEEEeEeEEe-CCeEEEEeCCcchhhHHhhcCCcEEEEEEccccc
Confidence 356678899999999999999997 78899999999998 466788888889999999999999999998872
Q ss_pred -------CCccccEEEEEEEEEeCCCchHHHH
Q 025535 217 -------SGLSNARVTIFGDIFPLPEHQQVVI 241 (251)
Q Consensus 217 -------dp~a~aRVTL~G~a~~Vedeeee~a 241 (251)
....-..|.++|+++.|+++++..+
T Consensus 81 ~~~~~~~~s~~y~SVvv~G~~~~l~~~~~k~~ 112 (166)
T COG3467 81 VLKSPFNSSRNYRSVVVFGRAEELSDLEEKAA 112 (166)
T ss_pred eecccccCCcceEEEEEEeEEEEcCChHHHHH
Confidence 2344568999999999999755533
No 10
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.90 E-value=5e-09 Score=85.50 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=72.2
Q ss_pred HHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC---CC
Q 025535 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW---SG 218 (251)
Q Consensus 142 ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~---dp 218 (251)
.+++.+||+.+.+|+||+++ +|.||+.+++|+++ +|.+||..+....+.++|+++| |++++...+. +.
T Consensus 2 ~~e~~~iL~~~~~g~la~~~-------~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~ 72 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD-------DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAE 72 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE-------TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETS
T ss_pred HHHHHHHHhhCCEEEEEEEe-------CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecc
Confidence 46899999999999999998 89999999999999 6778888777788888999889 9999987542 11
Q ss_pred c------cccEEEEEEEEEeCCCchHH
Q 025535 219 L------SNARVTIFGDIFPLPEHQQV 239 (251)
Q Consensus 219 ~------a~aRVTL~G~a~~Vedeeee 239 (251)
. .-..|+++|+++.|+++++.
T Consensus 73 ~~~~~~~~y~SVi~~G~~~~v~d~~ek 99 (143)
T PF12900_consen 73 SACSFSMNYRSVIVFGRAEEVEDEEEK 99 (143)
T ss_dssp CGGGEEEEEEEEEEEEEEEEEHSHHHH
T ss_pred cCCcCcceEEEEEEEEEEEEeCCHHHH
Confidence 1 23479999999999666443
No 11
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.86 E-value=1.6e-08 Score=87.99 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=69.0
Q ss_pred HHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCcccc
Q 025535 144 AVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNA 222 (251)
Q Consensus 144 ~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~a 222 (251)
+++..++..+.++|||++ .+|.|++-+|.|. .+++| ++|++...+.|.+||.+||+|+|++..++. ..
T Consensus 19 a~~~~~~~~~~~~lATv~------~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~~----~~ 87 (195)
T PRK05679 19 AVKAELNDPNAMTLATVD------EDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKSL----ER 87 (195)
T ss_pred HHhcCCCCCceEEEEeeC------CCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCCC----CE
Confidence 344456778899999998 5899999999995 67665 899999999999999999999999987752 24
Q ss_pred EEEEEEEEEeCCCc
Q 025535 223 RVTIFGDIFPLPEH 236 (251)
Q Consensus 223 RVTL~G~a~~Vede 236 (251)
.|.|.|.|+.++++
T Consensus 88 qvrv~G~a~~~~~~ 101 (195)
T PRK05679 88 QVRVEGRVEKVSAE 101 (195)
T ss_pred EEEEEEEEEEeCHH
Confidence 79999999998765
No 12
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.1e-10 Score=102.46 Aligned_cols=92 Identities=33% Similarity=0.463 Sum_probs=84.9
Q ss_pred HHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC-CCcc
Q 025535 142 ALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW-SGLS 220 (251)
Q Consensus 142 ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~-dp~a 220 (251)
..-+|.+++..+++.|+|+.+ .+|+||+|++++.+|-+|+++++++.+..|++ +.+|||||+++.+.+. |+++
T Consensus 6 ~~na~~~l~~~~~~~l~~~~~-----~~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~ 79 (245)
T COG0748 6 HMNARHLLRSARLAALAGLEP-----VTGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELA 79 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-----CCCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhh
Confidence 456899999999999999984 49999999999999999999999999999999 9999999999999985 7889
Q ss_pred ccEEEEEEEEEeCCCchHH
Q 025535 221 NARVTIFGDIFPLPEHQQV 239 (251)
Q Consensus 221 ~aRVTL~G~a~~Vedeeee 239 (251)
.+|||+.+++.+++.++..
T Consensus 80 ~~Rl~~e~~afr~~~~sv~ 98 (245)
T COG0748 80 LPRLTLEIEAFRLEFDSVA 98 (245)
T ss_pred ccchhHHHHHHHhccchHH
Confidence 9999999999999888555
No 13
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.34 E-value=3.5e-06 Score=71.77 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=77.8
Q ss_pred cHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCC-CCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCc
Q 025535 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM-GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGL 219 (251)
Q Consensus 141 ~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~d-G~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~ 219 (251)
...++..+++...+|+|+|+. .+|+|+.=+|.|--|.. |.+||+++-.+.++..|++||+|+|++..+..
T Consensus 6 ~~~~~~~~~e~~kv~~l~tv~------~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~--- 76 (145)
T COG3871 6 ALQALAELLEGSKVGMLATVQ------ENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH--- 76 (145)
T ss_pred HHHHHHHHHhhCceEEEEEec------CCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---
Confidence 456788899999999999998 58899999999776543 88999999999999999999999999998884
Q ss_pred cccEEEEEEEEEeCCCchHHHH
Q 025535 220 SNARVTIFGDIFPLPEHQQVVI 241 (251)
Q Consensus 220 a~aRVTL~G~a~~Vedeeee~a 241 (251)
...|.|.|+++.+++......
T Consensus 77 -~~fv~v~Gtael~~dra~~d~ 97 (145)
T COG3871 77 -DAFVEVSGTAELVEDRAKIDE 97 (145)
T ss_pred -cceEEEEEEEEeeccHHHHHH
Confidence 358999999999988744433
No 14
>PRK06733 hypothetical protein; Provisional
Probab=98.33 E-value=5.2e-06 Score=71.07 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeE--ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC
Q 025535 139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA--PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW 216 (251)
Q Consensus 139 ~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa--~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~ 216 (251)
+...++..++|+.....+|+|++ +.+|.|..+++.++ +| +..+.|....+..-.+||++||+|+|++.+++.
T Consensus 7 ~~Lt~el~~~L~~~~~~~laTv~-----kedG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~ 80 (151)
T PRK06733 7 PTLTEDLVQLLRKERIVTLATTD-----FEKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANES 80 (151)
T ss_pred hhcCHHHHHHHcCCceEEEEEEc-----cCCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc
Confidence 45567889999999999999998 24899999999865 45 467899999999999999999999999999872
Q ss_pred CCccccEEEEEEEEEeCCC
Q 025535 217 SGLSNARVTIFGDIFPLPE 235 (251)
Q Consensus 217 dp~a~aRVTL~G~a~~Ved 235 (251)
..++.|+++.+.+
T Consensus 81 ------~yqIkG~a~i~~e 93 (151)
T PRK06733 81 ------VYSISGAAEILTD 93 (151)
T ss_pred ------EEEEEEEEEEEee
Confidence 4788888887754
No 15
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.32 E-value=4.4e-06 Score=74.41 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=64.6
Q ss_pred hhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEEEEE
Q 025535 150 EQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGD 229 (251)
Q Consensus 150 ~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~G~ 229 (251)
...+.++|||++ .+|.|.+=+|.+....++.++|++...+.|.++|.+||+|+|++..++. ...|.|.|+
T Consensus 47 ~~~~~~~LaTvd------~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~----~~qvrv~G~ 116 (217)
T TIGR00558 47 TEPNAMTLSTVD------ESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPDL----ERQVRVEGK 116 (217)
T ss_pred CCCceEEEEEEC------CCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCCC----CEEEEEEEE
Confidence 456789999998 5899999988885433445999999999999999999999999988762 357999999
Q ss_pred EEeCCCc
Q 025535 230 IFPLPEH 236 (251)
Q Consensus 230 a~~Vede 236 (251)
|+.++++
T Consensus 117 a~~~~~~ 123 (217)
T TIGR00558 117 VEKLPRE 123 (217)
T ss_pred EEECCHH
Confidence 9998665
No 16
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.03 E-value=3.8e-07 Score=83.31 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=79.1
Q ss_pred CCCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCC
Q 025535 137 GLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW 216 (251)
Q Consensus 137 ~~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~ 216 (251)
..+....+++.+..++....|||++ .+|.|-+|+.+|..+ ++..+||+|..++|.+|+..+|.||+|+.+++.
T Consensus 79 ~~~Rl~~e~~afr~~~~sv~lat~~------~~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iedea 151 (245)
T COG0748 79 ALPRLTLEIEAFRLEFDSVALATLR------ERGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDEA 151 (245)
T ss_pred hccchhHHHHHHHhccchHHHhhhh------hcCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCch
Confidence 4577778999999999999999998 599999999999998 566999999999999999999999999999985
Q ss_pred ---CCccccEEEEEEEEEeCCC
Q 025535 217 ---SGLSNARVTIFGDIFPLPE 235 (251)
Q Consensus 217 ---dp~a~aRVTL~G~a~~Ved 235 (251)
......|++....+..++.
T Consensus 152 ~a~s~~~r~rl~~hmnAd~~ea 173 (245)
T COG0748 152 KAKSAFARKRLREHMNADHAEA 173 (245)
T ss_pred hhhhHHHHHHHHHHhhhHHHHH
Confidence 3456667776666666655
No 17
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=97.99 E-value=4.9e-05 Score=74.69 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=65.0
Q ss_pred HhhCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEEE
Q 025535 149 MEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (251)
Q Consensus 149 L~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~ 227 (251)
+.+.+..+|||++ .+|.|.+-+|-+- +|++| ++||+.-.+.|.++|.+||+|||++..++- ...|.|.
T Consensus 286 ~~ep~am~LATvd------~~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~~----~rQvRv~ 354 (462)
T PLN03049 286 LREPNAMTLATAG------EDGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDGL----HRQVRVE 354 (462)
T ss_pred CCCCCeeEEEEEC------CCCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCCC----CEEEEEE
Confidence 4577899999998 5999999999775 56565 699999999999999999999999987762 2469999
Q ss_pred EEEEeCCCc
Q 025535 228 GDIFPLPEH 236 (251)
Q Consensus 228 G~a~~Vede 236 (251)
|+|++++++
T Consensus 355 G~a~~~~~~ 363 (462)
T PLN03049 355 GSVEKVSEE 363 (462)
T ss_pred EEEEECCHH
Confidence 999999843
No 18
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=97.95 E-value=3.7e-05 Score=69.07 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=66.9
Q ss_pred HhhCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEEE
Q 025535 149 MEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (251)
Q Consensus 149 L~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~ 227 (251)
+...+..+|||++ .+|.|.+=+|-.. +|+.| ++||+.-.+.|.+.|.+||.+++++.-.+- ...|.|.
T Consensus 43 ~~ePnAm~lATvd------~~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np~Aal~F~W~~L----~RQVrv~ 111 (214)
T COG0259 43 VNEPNAMTLATVD------EQGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANPYAALLFPWKEL----ERQVRVE 111 (214)
T ss_pred cCCCceeEEEeec------CCCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCcceeEEecchhc----cceEEEe
Confidence 5667789999998 4899999998887 46556 889999889999999999999999876652 2369999
Q ss_pred EEEEeCCCchHH
Q 025535 228 GDIFPLPEHQQV 239 (251)
Q Consensus 228 G~a~~Vedeeee 239 (251)
|+|++|++++.+
T Consensus 112 G~ve~vs~eesd 123 (214)
T COG0259 112 GRVERVSDEESD 123 (214)
T ss_pred eeeeeCCHHHHH
Confidence 999999877544
No 19
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.00011 Score=62.22 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEec-CCchhhhhhhcCCceEEEEEcCCCCCccc
Q 025535 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFS-PLAIHTRNLLADPRCTLVVQIPGWSGLSN 221 (251)
Q Consensus 143 e~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS-~lA~HTrNL~aDPRVSLtV~e~e~dp~a~ 221 (251)
..+-++|..++.-++|... +|.||+.-..|+.|+.-.-+|+++ ....|.+=+..|++|..+|..+..-....
T Consensus 3 ~rI~~flkkq~v~Tw~~~~-------e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~i 75 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ-------EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALI 75 (145)
T ss_pred hHHHHHHHhhheeeeeeec-------CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeee
Confidence 4567889999999999997 899999999999997655555555 56778888999999999999887555666
Q ss_pred cEEEEEEEEEeCCCchHHHHHHhcc
Q 025535 222 ARVTIFGDIFPLPEHQQVVIYFFLI 246 (251)
Q Consensus 222 aRVTL~G~a~~Vedeeee~ar~~yi 246 (251)
..|++.|+...+..++.+.||.+|-
T Consensus 76 kGVQfkge~~~l~~~q~~~Ark~Y~ 100 (145)
T COG3787 76 KGVQFKGEISRLSGEQSDAARKAYN 100 (145)
T ss_pred eeeeeeeeehhhhcchHHHHHHHHh
Confidence 7999999999999999999998874
No 20
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.37 E-value=0.00088 Score=67.46 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=64.4
Q ss_pred hhCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccEEEEEE
Q 025535 150 EQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFG 228 (251)
Q Consensus 150 ~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~G 228 (251)
.+.+..+|||++ .+|.|.+=+|-+- +|++| ++||+.-.+.|.+.|.+||+|+|++...+- ...|.|.|
T Consensus 369 ~eP~Am~LATv~------~~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~l----~rQVRi~G 437 (544)
T PLN02918 369 REPNAMALSTAN------KDGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEEL----NRQVRVEG 437 (544)
T ss_pred CCCccceEEeeC------CCCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeeccc----cEEEEEEE
Confidence 466788999998 5899999999886 46555 779998899999999999999999988772 24699999
Q ss_pred EEEeCCCc
Q 025535 229 DIFPLPEH 236 (251)
Q Consensus 229 ~a~~Vede 236 (251)
.|++++++
T Consensus 438 ~v~~~~~~ 445 (544)
T PLN02918 438 SVQKVPES 445 (544)
T ss_pred EEEECCHH
Confidence 99999776
No 21
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=97.23 E-value=0.0028 Score=54.81 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECC----CCCeEEEecCCchhhhhhhcCCceEEEEEcC
Q 025535 139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDS----MGHPIFSFSPLAIHTRNLLADPRCTLVVQIP 214 (251)
Q Consensus 139 ~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~----dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~ 214 (251)
....+.+++|+++..+|+|.|.. +|.|.+|.+||.++. .+.++..++....+.+.|..+..|=+.|..+
T Consensus 9 ~~d~~~l~~~i~~~pfa~Lvt~~-------~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp 81 (169)
T PF04299_consen 9 EEDPEELRAFIRAHPFATLVTNG-------DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGP 81 (169)
T ss_dssp ---HCHHHHHHHHS-EEEEEEEE-------TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEE
T ss_pred cCCHHHHHHHHHhCCcEEEEEcC-------CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECC
Confidence 45567899999999999999976 677999999999984 4556677788888999999888888888877
Q ss_pred CC----CCc-------------cccEEEEEEEEEeCCCchHH
Q 025535 215 GW----SGL-------------SNARVTIFGDIFPLPEHQQV 239 (251)
Q Consensus 215 e~----dp~-------------a~aRVTL~G~a~~Vedeeee 239 (251)
.. +++ ....|.+.|+++.++++++.
T Consensus 82 ~aYISPsWYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~ 123 (169)
T PF04299_consen 82 HAYISPSWYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWL 123 (169)
T ss_dssp EEEE-CCCS----STTS---EEEEEEEEEEEEEEE---HHHH
T ss_pred CeeECchhhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHH
Confidence 52 222 33579999999999766433
No 22
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.18 E-value=0.0037 Score=50.88 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=53.9
Q ss_pred CeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCC-----chhhhhhhcCCceEEEEEcCCCCCccccEEEEE
Q 025535 153 RFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPL-----AIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (251)
Q Consensus 153 ~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~l-----A~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~ 227 (251)
.+..|-|.. ++.|.|+.+++.|..++ |.+++..|.- ..-.+||+++|+|.|.+ .+ + +..
T Consensus 8 p~~lL~t~G-----RkSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~--~g-------~-~~~ 71 (113)
T TIGR00026 8 PVLLLTTTG-----RKSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRV--GG-------K-TFV 71 (113)
T ss_pred CEEEEEECC-----CCCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEE--CC-------E-EEE
Confidence 467777775 58999999999999885 4456554432 44589999999999877 22 1 478
Q ss_pred EEEEeCCCchHHH
Q 025535 228 GDIFPLPEHQQVV 240 (251)
Q Consensus 228 G~a~~Vedeeee~ 240 (251)
++++.++++|.+.
T Consensus 72 ~~ar~v~~~e~~~ 84 (113)
T TIGR00026 72 ATARLVSGDERDQ 84 (113)
T ss_pred EEEEECCchhHHH
Confidence 8999998886653
No 23
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0033 Score=52.82 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=67.3
Q ss_pred HHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCCCCCccccE
Q 025535 144 AVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNAR 223 (251)
Q Consensus 144 ~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e~dp~a~aR 223 (251)
.+.++|..+..+.|||+. +|.|-.=+.-+.....+.+||++...-.-.+.|.+||.|+++=..-+. ..
T Consensus 3 d~leFLken~~~~laTve-------~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg-----~~ 70 (132)
T COG5015 3 DPLEFLKENKSVALATVE-------DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDG-----VM 70 (132)
T ss_pred cHHHHHHhCCcEEEEEcc-------CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCc-----eE
Confidence 467899999999999997 899988877777665677888888777778999999999997555442 36
Q ss_pred EEEEEEEEeCCCchH
Q 025535 224 VTIFGDIFPLPEHQQ 238 (251)
Q Consensus 224 VTL~G~a~~Vedeee 238 (251)
|.|+|+|+.+++-+-
T Consensus 71 vrlrg~a~f~~niel 85 (132)
T COG5015 71 VRLRGRAEFVENIEL 85 (132)
T ss_pred EEEeeeEEeccchHH
Confidence 779999999977643
No 24
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=96.94 E-value=0.0014 Score=59.18 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=63.1
Q ss_pred hCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCCCCeEEEecC-CchhhhhhhcCCceEEEEEcCCCCCccccEEEEEE
Q 025535 151 QARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSMGHPIFSFSP-LAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFG 228 (251)
Q Consensus 151 ~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~dG~pif~vS~-lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~G 228 (251)
..+..+|||+. .+|.|..=+|-|- +|.+| ++||+.- .+++..||..||.++|++.-..-+ ..|.|.|
T Consensus 55 ~~~am~LsT~~------~d~rvssRmvLlKgl~~~g-f~fytn~~~srk~kdL~~NP~Aal~Fyw~~l~----rQVRveG 123 (228)
T KOG2586|consen 55 EINAMTLSTAD------KDGRVSSRMVLLKGLDHDG-FVFYTNYGTSRKGKDLQENPNAALLFYWEDLN----RQVRVEG 123 (228)
T ss_pred chhheeehhcc------ccCCcceeeeeeecccCCC-eEEEeeccccccccccccCCcceEEEeehhcc----ceeEEEe
Confidence 34567899998 5999999999887 56677 6777765 889999999999999999877632 2688999
Q ss_pred EEEeCCCchHH
Q 025535 229 DIFPLPEHQQV 239 (251)
Q Consensus 229 ~a~~Vedeeee 239 (251)
.++.+++++.+
T Consensus 124 ~ve~l~~ee~e 134 (228)
T KOG2586|consen 124 IVEKLPREEAE 134 (228)
T ss_pred ccccCCHHHHH
Confidence 99999887555
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=96.66 E-value=0.0042 Score=51.63 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=48.7
Q ss_pred CeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecC-----CchhhhhhhcCCceEEEEEcCCCCCccccEEEEE
Q 025535 153 RFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSP-----LAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIF 227 (251)
Q Consensus 153 ~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~-----lA~HTrNL~aDPRVSLtV~e~e~dp~a~aRVTL~ 227 (251)
.++.|-|.. ++.|.|+.+++.|..++ |++++..+. ...=.+||+++|.|.|.+.. -++.
T Consensus 26 ~~~lLtt~G-----RkSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~g----------~~~~ 89 (132)
T PF04075_consen 26 PVLLLTTTG-----RKSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVGG----------RRRR 89 (132)
T ss_dssp EEEEEEEE------TTT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEETT----------EEEE
T ss_pred cEEEEEECC-----CCCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEECC----------EEEE
Confidence 367888886 68999999999999884 556666652 34557899999998886522 2566
Q ss_pred EEEEeCCCchHH
Q 025535 228 GDIFPLPEHQQV 239 (251)
Q Consensus 228 G~a~~Vedeeee 239 (251)
++++.++++|.+
T Consensus 90 ~~a~~~~~~er~ 101 (132)
T PF04075_consen 90 VRAREVTDDERA 101 (132)
T ss_dssp EEEEEE-HHHHH
T ss_pred EEEEEcCchHHH
Confidence 777888766444
No 26
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=95.62 E-value=0.098 Score=41.77 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=54.5
Q ss_pred HhhCCeEEEEeecCCcCCCCCCcceeEEEeeE-ECCC----CC-eEEEecCCchhhhhhh-cCCceEEEEEcCCCCCccc
Q 025535 149 MEQARFAHLCTVMSRMHHRREGYPFGSLVDFA-PDSM----GH-PIFSFSPLAIHTRNLL-ADPRCTLVVQIPGWSGLSN 221 (251)
Q Consensus 149 L~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa-~D~d----G~-pif~vS~lA~HTrNL~-aDPRVSLtV~e~e~dp~a~ 221 (251)
-...++.+|||++. .+|.|.+=.|-|- ...+ .. +.|++-..+.|+..|. .||+|++++...+. .
T Consensus 17 ~~~~~~~~LATv~~-----~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~~----~ 87 (100)
T PF12766_consen 17 SHPFRYFQLATVDP-----PDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPET----R 87 (100)
T ss_dssp TCGGGCEEEEEEE------TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECCC----T
T ss_pred CCCCceeEEEEecC-----CCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCCc----c
Confidence 45678999999982 3899998777665 2332 23 5566666778999999 99999999988873 2
Q ss_pred cEEEEEEEEEeC
Q 025535 222 ARVTIFGDIFPL 233 (251)
Q Consensus 222 aRVTL~G~a~~V 233 (251)
..+-|.|++..+
T Consensus 88 ~Q~Ri~G~a~ii 99 (100)
T PF12766_consen 88 EQFRIRGRASII 99 (100)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
Confidence 356778888765
No 27
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=95.40 E-value=0.12 Score=46.80 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCC----CCeEEEecCCchhhhhhhcCCceEEEEEc
Q 025535 138 LPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM----GHPIFSFSPLAIHTRNLLADPRCTLVVQI 213 (251)
Q Consensus 138 ~~~~ae~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~d----G~pif~vS~lA~HTrNL~aDPRVSLtV~e 213 (251)
+....+.+..|++...+|+|.|.. .|.|+++.+||.+++. |.++..++....|.+-+...-.|=++++.
T Consensus 8 ~~~d~~~L~a~ir~~pfgtlvt~~-------~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqg 80 (209)
T COG2808 8 REEDPEVLHALIRAHPFGTLVTSG-------GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQG 80 (209)
T ss_pred ccCCHHHHHHHHHhCCceEEEecc-------CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeC
Confidence 466788999999999999999997 7899999999998754 23445555666688888877677777777
Q ss_pred CCC----CCc-------------cccEEEEEEEEEeCCCch
Q 025535 214 PGW----SGL-------------SNARVTIFGDIFPLPEHQ 237 (251)
Q Consensus 214 ~e~----dp~-------------a~aRVTL~G~a~~Vedee 237 (251)
++. ++| ....|...|++..++|++
T Consensus 81 pdAYISP~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~ 121 (209)
T COG2808 81 PDAYISPAWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDE 121 (209)
T ss_pred CCcccCcccccccccCCCcCCCcceEEEEEecceeeeccHH
Confidence 762 222 234688999999998874
No 28
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=91.82 E-value=0.51 Score=41.20 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCeEEEEeecCCcCCCCCCcceeEEEeeEECCC-CCeEEEecCCch-hh-hhhhcCCceEEEEEcCC
Q 025535 143 LAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSM-GHPIFSFSPLAI-HT-RNLLADPRCTLVVQIPG 215 (251)
Q Consensus 143 e~AR~LL~~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~d-G~pif~vS~lA~-HT-rNL~aDPRVSLtV~e~e 215 (251)
...|++++...++.|+|++ .||.|-..+.+|.-..| +.+.+.+.+... ++ +||.+||++++......
T Consensus 32 ~~~~e~~~~~~~~~laT~d------~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~ 101 (173)
T COG3576 32 NHYREFIQTSQLAALATVD------KDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRN 101 (173)
T ss_pred HhhhhhhccccEEEEEEec------cCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccC
Confidence 4567777779999999998 58999999999975333 345555655544 44 67999999999877763
No 29
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=67.43 E-value=15 Score=31.83 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=38.8
Q ss_pred EEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcC
Q 025535 155 AHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIP 214 (251)
Q Consensus 155 gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~ 214 (251)
.++.|.+ .+ .|..+++....+ ++.+++.+=..+...+||++++.+.+-|..|
T Consensus 3 ~IvtT~~------~~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~D 54 (177)
T PF04289_consen 3 VIVTTKN------ED-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDD 54 (177)
T ss_dssp EEEEEES------TT--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---
T ss_pred EEEEECC------CC-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCC
Confidence 3556665 35 899999999986 4457888888788889999999999999886
No 30
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=56.99 E-value=25 Score=26.73 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHhh--CCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEE
Q 025535 138 LPRPALAVRNLMEQ--ARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVV 211 (251)
Q Consensus 138 ~~~~ae~AR~LL~~--a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV 211 (251)
...|.+.+.+|-.. .+.-|-+|++ |.+|-+-+.. ..+|..++.++..-++.-++...-.|.+.+
T Consensus 15 v~vP~~v~~~l~~~~~g~v~V~~tI~--------g~~~~~sl~p--~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~l 80 (80)
T PF08922_consen 15 VEVPFDVAEELGEGGWGRVPVRGTID--------GHPWRTSLFP--MGNGGYILPVKAAVRKAIGKEAGDTVEVTL 80 (80)
T ss_dssp EE--S-HHHHH--S--S-EEEEEEET--------TEEEEEEEEE--SSTT-EEEEE-HHHHHHHT--TTSEEEEEE
T ss_pred EEeCHHHHHHhccccCCceEEEEEEC--------CEEEEEEEEE--CCCCCEEEEEcHHHHHHcCCCCCCEEEEEC
Confidence 35566677777766 7888999994 8999884443 557888898888777777777777776653
No 31
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=28.95 E-value=67 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.3
Q ss_pred cceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCc
Q 025535 171 YPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPR 206 (251)
Q Consensus 171 ~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPR 206 (251)
.+-|+-.-|+.. ||.++++.|..-.+.--+.+|||
T Consensus 13 I~PGtG~m~Vr~-Dg~v~~FcssKc~k~~~~~rnPR 47 (66)
T COG2075 13 IEPGTGIMYVRN-DGKVLRFCSSKCEKLFKLGRNPR 47 (66)
T ss_pred cCCCceEEEEec-CCeEEEEechhHHHHHHccCCCc
Confidence 345666778876 79999999999888777888997
No 32
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=27.39 E-value=1.3e+02 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=44.2
Q ss_pred hCCeEEEEeecCCcCCCCCCcceeEEEeeEECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCC
Q 025535 151 QARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPG 215 (251)
Q Consensus 151 ~a~~gvLATls~~~~~~~DG~P~gS~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e 215 (251)
.....++.|.+. +++.|.|..+......++-. +.+.+...+.-.+||++..+..+-|...+
T Consensus 17 p~pv~~VTt~~~---~~~ng~~~s~~~~vs~~PP~-v~v~v~~~~~t~~~i~~~~~F~vNvl~~~ 77 (176)
T COG1853 17 PTPVTVVTTKDG---DRRNGMTASSFTSVSLEPPL-VLVCVNKSSDTWPNIEETGEFVVNVLSED 77 (176)
T ss_pred CCceEEEEcCCC---CcceeEEEEEEEeccCCCCE-EEEEecCCcchhhhhhhcCEEEEEeCCHH
Confidence 344666777763 36788888888887777632 55666776666789999999999887665
No 33
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=26.78 E-value=98 Score=25.04 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=35.5
Q ss_pred eEEEEeecCCcCCCCCCcceeEEEeeE----ECCCCCeEEEecCCchhhhhhhcCCceEEEEEcCC
Q 025535 154 FAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPG 215 (251)
Q Consensus 154 ~gvLATls~~~~~~~DG~P~gS~V~Fa----~D~dG~pif~vS~lA~HTrNL~aDPRVSLtV~e~e 215 (251)
..+++| . .+|.|.+-++.+. .++ -.+.|.+...+.-.+||++.+.++|.|...+
T Consensus 8 v~vvtt-~------~~g~~~~~~~s~~~~~s~~P-p~v~~~l~~~~~t~~~i~~~~~f~vn~l~~~ 65 (154)
T PF01613_consen 8 VAVVTT-D------EDGEPNGMTVSSVTSVSLDP-PLVLVSLNKSSHTYDNIEESGEFTVNVLSED 65 (154)
T ss_dssp -EEEEE-E------ETTEEEEEEESSEEEEETTT-TEEEEEEETTSHHHHHHHHHSEEEEEEEBGG
T ss_pred cEEEEE-C------CCCeEEEEEeeeeEEEECCC-CEEEEEECCCCchhHHHhhCCcEEEEeCHHH
Confidence 466777 5 2666666555543 343 3355666666666689999999999987764
No 34
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=25.33 E-value=54 Score=27.98 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=24.6
Q ss_pred EEEeeEECCCCCeEEEecCCchhhhhhhcCCc
Q 025535 175 SLVDFAPDSMGHPIFSFSPLAIHTRNLLADPR 206 (251)
Q Consensus 175 S~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPR 206 (251)
.-..|+.. ||.+|+|++....+.-.|++|||
T Consensus 18 ~G~~fVR~-DGkvf~FcssKC~k~f~~kRnPR 48 (131)
T PRK14891 18 TGTMFVRK-DGTVLHFVDSKCEKNYDLGREAR 48 (131)
T ss_pred CCcEEEec-CCCEEEEecHHHHHHHHccCCCc
Confidence 34467765 79999999998887777999996
No 35
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=22.67 E-value=83 Score=22.80 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=23.8
Q ss_pred EEeeEECCCCCeEEEecCCchhhhhhhcCCc
Q 025535 176 LVDFAPDSMGHPIFSFSPLAIHTRNLLADPR 206 (251)
Q Consensus 176 ~V~Fa~D~dG~pif~vS~lA~HTrNL~aDPR 206 (251)
-.-|+.. ||.++++.+....+.-.+.+|||
T Consensus 18 G~~~Vr~-Dgkv~~F~s~Kc~~~~~~krnPR 47 (54)
T cd00472 18 GKMYVRN-DGKVFRFCSSKCEKNFLRKRNPR 47 (54)
T ss_pred ccEEEec-CCCEEEEECHHHHHHHHCcCCCC
Confidence 3456665 79999999999887777888996
No 36
>PRK00807 50S ribosomal protein L24e; Validated
Probab=21.41 E-value=92 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=22.0
Q ss_pred eeEECCCCCeEEEecCCchhhhhhhcCCc
Q 025535 178 DFAPDSMGHPIFSFSPLAIHTRNLLADPR 206 (251)
Q Consensus 178 ~Fa~D~dG~pif~vS~lA~HTrNL~aDPR 206 (251)
.|+.. ||.+|++.|....+.--+.+|||
T Consensus 18 ~~vr~-Dgkv~~Fcs~KC~~~f~~~~npr 45 (52)
T PRK00807 18 MYVKK-DGTILYFCSSKCEKNYKLGRVPR 45 (52)
T ss_pred EEEEe-CCcEEEEeCHHHHHHHHccCCCC
Confidence 35544 68999999998887667888997
No 37
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=20.64 E-value=41 Score=26.40 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=10.2
Q ss_pred HHHHHHhccccC
Q 025535 238 QVVIYFFLINFY 249 (251)
Q Consensus 238 ee~ar~~yi~f~ 249 (251)
-|.|+|.|+||+
T Consensus 30 iE~AhWfY~Df~ 41 (85)
T PF05026_consen 30 IEEAHWFYEDFY 41 (85)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 358999999997
Done!