Query 025536
Match_columns 251
No_of_seqs 187 out of 823
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4397 Uncharacterized conser 100.0 5.3E-30 1.1E-34 222.8 4.7 149 58-233 40-188 (213)
2 PRK01310 hypothetical protein; 99.9 1.2E-26 2.7E-31 185.8 12.0 94 154-249 4-102 (104)
3 PRK01530 hypothetical protein; 99.9 1.8E-26 4E-31 185.2 11.3 90 158-248 10-103 (105)
4 PRK05090 hypothetical protein; 99.9 1.6E-26 3.5E-31 182.5 10.2 91 152-245 1-91 (95)
5 COG1872 Uncharacterized conser 99.9 2.3E-26 5E-31 183.6 10.4 95 153-248 4-100 (102)
6 KOG3276 Uncharacterized conser 99.9 5.6E-26 1.2E-30 184.8 10.5 117 131-247 2-120 (125)
7 PRK04021 hypothetical protein; 99.9 1.7E-25 3.6E-30 175.7 11.4 88 155-246 2-91 (92)
8 PF02594 DUF167: Uncharacteris 99.9 1.5E-25 3.2E-30 170.6 9.2 75 161-235 2-77 (77)
9 PRK00647 hypothetical protein; 99.9 8E-25 1.7E-29 173.2 10.5 85 160-245 3-87 (96)
10 TIGR00251 conserved hypothetic 99.9 1.8E-23 3.9E-28 162.8 9.7 77 155-235 1-79 (87)
11 PF04828 GFA: Glutathione-depe 78.6 2.1 4.5E-05 31.4 2.7 33 104-139 46-78 (92)
12 PF09581 Spore_III_AF: Stage I 73.7 6 0.00013 33.7 4.6 58 164-221 124-187 (188)
13 COG3791 Uncharacterized conser 70.1 10 0.00022 31.3 5.1 44 88-138 55-98 (133)
14 PF01187 MIF: Macrophage migra 69.6 12 0.00026 29.8 5.2 56 165-221 37-97 (114)
15 PF04502 DUF572: Family of unk 66.8 4.2 9.1E-05 38.5 2.4 32 104-138 75-106 (324)
16 COG1451 Predicted metal-depend 61.4 18 0.00039 32.7 5.3 50 158-212 6-55 (223)
17 PTZ00397 macrophage migration 59.1 37 0.0008 26.8 6.2 56 165-221 39-99 (116)
18 PF08968 DUF1885: Domain of un 46.3 7 0.00015 33.0 0.1 36 184-223 82-122 (130)
19 PRK05417 glutathione-dependent 43.5 17 0.00036 32.4 2.1 32 105-136 92-124 (191)
20 COG5134 Uncharacterized conser 41.3 23 0.00049 32.8 2.6 19 105-123 76-96 (272)
21 COG1645 Uncharacterized Zn-fin 40.4 12 0.00027 31.6 0.7 23 107-135 29-51 (131)
22 PTZ00450 macrophage migration 39.8 78 0.0017 25.6 5.3 58 164-222 38-100 (113)
23 PF02738 Ald_Xan_dh_C2: Molybd 32.9 77 0.0017 31.6 5.1 50 178-227 323-373 (547)
24 PF12685 SpoIIIAH: SpoIIIAH-li 32.8 92 0.002 27.2 5.0 47 175-221 150-196 (196)
25 TIGR02820 formald_GSH S-(hydro 32.1 25 0.00055 31.1 1.4 30 106-137 89-121 (182)
26 PF09044 Kp4: Kp4; InterPro: 30.5 23 0.00049 29.9 0.8 26 106-131 95-122 (128)
27 PF11648 RIG-I_C-RD: C-termina 29.6 24 0.00052 29.0 0.8 20 103-122 1-20 (123)
28 PRK00398 rpoP DNA-directed RNA 28.8 38 0.00082 22.8 1.5 18 106-123 21-38 (46)
29 PF14803 Nudix_N_2: Nudix N-te 26.6 51 0.0011 21.6 1.8 21 91-113 9-29 (34)
30 PF11331 DUF3133: Protein of u 25.7 42 0.00092 23.6 1.3 17 103-119 28-44 (46)
31 PRK02220 4-oxalocrotonate taut 25.5 72 0.0016 22.0 2.6 25 197-221 18-42 (61)
32 cd00491 4Oxalocrotonate_Tautom 25.5 85 0.0019 21.2 2.9 24 198-221 18-41 (58)
33 TIGR03311 Se_dep_Molyb_1 selen 24.9 1.4E+02 0.003 32.1 5.6 51 178-228 598-648 (848)
34 TIGR00013 taut 4-oxalocrotonat 23.7 95 0.0021 21.4 2.9 24 198-221 19-42 (63)
35 TIGR02416 CO_dehy_Mo_lg carbon 23.3 1.2E+02 0.0025 32.1 4.6 49 179-227 480-529 (770)
36 PRK01964 4-oxalocrotonate taut 23.2 85 0.0018 22.1 2.6 25 197-221 18-42 (64)
37 PRK00745 4-oxalocrotonate taut 22.7 88 0.0019 21.6 2.6 22 200-221 21-42 (62)
38 PF01361 Tautomerase: Tautomer 22.7 90 0.002 21.5 2.6 22 200-221 20-41 (60)
39 PF14134 DUF4301: Domain of un 22.0 79 0.0017 32.4 2.9 47 47-99 244-293 (513)
40 COG1998 RPS31 Ribosomal protei 21.7 43 0.00092 24.2 0.7 11 106-116 37-47 (51)
41 TIGR03196 pucD xanthine dehydr 21.7 1.7E+02 0.0038 31.0 5.5 50 178-227 469-521 (768)
42 PRK01271 4-oxalocrotonate taut 21.7 1.8E+02 0.004 22.1 4.3 32 201-243 23-54 (76)
43 smart00834 CxxC_CXXC_SSSS Puta 21.3 39 0.00084 21.6 0.4 11 105-115 4-14 (41)
44 cd06406 PB1_P67 A PB1 domain i 20.9 3.4E+02 0.0074 21.1 5.7 55 187-243 12-66 (80)
45 PF06677 Auto_anti-p27: Sjogre 20.8 53 0.0011 22.4 1.0 12 107-118 18-29 (41)
46 PRK02289 4-oxalocrotonate taut 20.6 1.2E+02 0.0025 21.3 2.8 24 198-221 19-42 (60)
47 PRK00432 30S ribosomal protein 20.3 54 0.0012 23.1 1.0 13 105-117 36-48 (50)
48 KOG2531 Sugar (pentulose and h 20.3 5.4E+02 0.012 26.7 8.2 150 50-218 275-473 (545)
No 1
>KOG4397 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=5.3e-30 Score=222.77 Aligned_cols=149 Identities=24% Similarity=0.294 Sum_probs=118.7
Q ss_pred CCCcccCCCCCCCCeeEecCCcceeeeecccCceEEEEeCCCcccccccccCCCCCceeEEEecCCCccceEEEEEcCcc
Q 025536 58 TSSSLKMPKRKTDKAYVLDKTKHLARLNIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 137 (251)
Q Consensus 58 ~~~Le~LP~R~tD~ArVid~~kh~~Kl~~~~~~~v~irR~~G~iEkQyR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL 137 (251)
||+|++||+|++|+|+|||.+.|++|+|..++++|||||++||||+|||++|.+|+|||||||+|+ +.+++||+.+|+
T Consensus 40 DtqLekmPkRe~DrsrVid~~~h~akl~~~eg~~VylKR~e~giErQyR~~C~~C~Lpl~Yr~~~~--~~~~TFI~~~al 117 (213)
T KOG4397|consen 40 DTQLEKMPKRERDRSRVIDAKTHAAKLNVSEGETVYLKRGEGGIERQYRKKCIKCSLPLFYRHEPN--LETVTFIYIVAL 117 (213)
T ss_pred hhHHHhccCcccccccccchhhhHHHhccCCCCeEEEecCCccHHHHHHHhhhcCCceeEEecCCC--CCceEEEEEchh
Confidence 789999999999999999999999999999999999999998899999999999999999999997 577899999998
Q ss_pred cccccccCCCCCCCCCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCc
Q 025536 138 STVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQ 217 (251)
Q Consensus 138 ~~~q~~~~g~~~~vPpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~ 217 (251)
..-|. .+.++|+|+.+.+.- +....+|+--++.+ .|.+|... +|.-++++...++
T Consensus 118 ~~~q~----~~~~~~~~~~Q~~kk-v~~~r~~k~~gk~s-------------------svtvst~d-Eeeeeieare~ad 172 (213)
T KOG4397|consen 118 ALGQE----VGGFSINNEEQRPKK-VIMTRNTKNMGKFS-------------------SVTVSTID-EEEEEIEARETAD 172 (213)
T ss_pred hhhhh----cCCCCCCChhhccch-heeeeeeecccccc-------------------eeeecchh-HHHHHHHHHHHHH
Confidence 88332 477899999886644 55666655555544 34455555 6666666666666
Q ss_pred EEEEeccCCceeEEEE
Q 025536 218 MTLQRGWNNKSKLLVV 233 (251)
Q Consensus 218 VsIv~G~~SR~K~V~I 233 (251)
.....|+-+..++.+.
T Consensus 173 sy~~narii~~qL~rk 188 (213)
T KOG4397|consen 173 SYAMNARIIEKQLKRK 188 (213)
T ss_pred HHHHHhHHHHHHHHHh
Confidence 6666666665555444
No 2
>PRK01310 hypothetical protein; Validated
Probab=99.94 E-value=1.2e-26 Score=185.78 Aligned_cols=94 Identities=26% Similarity=0.354 Sum_probs=88.4
Q ss_pred ceeecCCCeEEEEEEEecCCcccceeeeeC-----CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCce
Q 025536 154 CISQLEGGLVQVAIEVEDRAQRSAITRVNA-----DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKS 228 (251)
Q Consensus 154 cI~~~~~G~v~L~V~VkP~Akr~~I~~~~~-----d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~ 228 (251)
+|++.++| +.|.|+|+|+|++++|.++.+ +.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||.
T Consensus 4 ~~~~~~~~-~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR~ 82 (104)
T PRK01310 4 PWRYSADG-LRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSRL 82 (104)
T ss_pred ceEECCCc-EEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCc
Confidence 57888888 999999999999999999863 379999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCHHHHHHHHHhhc
Q 025536 229 KLLVVEDLSARQVYEKLLEAV 249 (251)
Q Consensus 229 K~V~I~gls~e~v~~~L~~~l 249 (251)
|+|.|.+ +++++.++|...+
T Consensus 83 K~v~I~~-~~~~l~~~l~~~~ 102 (104)
T PRK01310 83 KQLRIDG-DPEDLGEALRALT 102 (104)
T ss_pred eEEEEeC-CHHHHHHHHHHHh
Confidence 9999999 9999999998765
No 3
>PRK01530 hypothetical protein; Reviewed
Probab=99.94 E-value=1.8e-26 Score=185.17 Aligned_cols=90 Identities=14% Similarity=0.293 Sum_probs=84.6
Q ss_pred cCCCeEEEEEEEecCCcccceeeee----CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEE
Q 025536 158 LEGGLVQVAIEVEDRAQRSAITRVN----ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVV 233 (251)
Q Consensus 158 ~~~G~v~L~V~VkP~Akr~~I~~~~----~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I 233 (251)
..+| +.|.|+|+|+|++++|.++. ++.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||+|+|+|
T Consensus 10 ~~~g-v~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR~K~i~I 88 (105)
T PRK01530 10 SSHQ-ALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILI 88 (105)
T ss_pred CCCc-EEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEE
Confidence 3566 99999999999999999985 468999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhh
Q 025536 234 EDLSARQVYEKLLEA 248 (251)
Q Consensus 234 ~gls~e~v~~~L~~~ 248 (251)
+|++++++.++|...
T Consensus 89 ~g~~~~~l~~~l~~~ 103 (105)
T PRK01530 89 KNINEDYLNLIINSY 103 (105)
T ss_pred eCCCHHHHHHHHHhh
Confidence 999999999998753
No 4
>PRK05090 hypothetical protein; Validated
Probab=99.94 E-value=1.6e-26 Score=182.50 Aligned_cols=91 Identities=22% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEE
Q 025536 152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL 231 (251)
Q Consensus 152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V 231 (251)
++|+.++++| +.|+|+|+|+|++++|.+++++.|+|+|+|||+|||||++|++|||+.|+||+|+|+|++|++||+|+|
T Consensus 1 ~~~~~~~~~~-~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr~K~v 79 (95)
T PRK05090 1 MSAVTWDGDG-LVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQV 79 (95)
T ss_pred CCceEEeCCe-EEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEE
Confidence 4678888888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCHHHHHHHH
Q 025536 232 VVEDLSARQVYEKL 245 (251)
Q Consensus 232 ~I~gls~e~v~~~L 245 (251)
+|++ ++++...|
T Consensus 80 ~I~~--~~~~~~~~ 91 (95)
T PRK05090 80 RIIN--PQQIPPEI 91 (95)
T ss_pred EEcC--cccChHhH
Confidence 9986 33344443
No 5
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=2.3e-26 Score=183.57 Aligned_cols=95 Identities=24% Similarity=0.494 Sum_probs=88.9
Q ss_pred CceeecCCCeEEEEEEEecCCcccceeeeeCCe--EEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeE
Q 025536 153 PCISQLEGGLVQVAIEVEDRAQRSAITRVNADD--VRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKL 230 (251)
Q Consensus 153 pcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~--L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~ 230 (251)
+++...++| +.|.|+|+|+|+++.|.++.+++ |+|+|+|||++||||++|++|||+.|++|+|+|+|++|++||+|+
T Consensus 4 ~~~~~~~~~-~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K~ 82 (102)
T COG1872 4 SAVKELDDG-VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLKT 82 (102)
T ss_pred hhHhhcCCc-eEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCcccceE
Confidence 456677788 99999999999999999998766 999999999999999999999999999999999999999999999
Q ss_pred EEEccCCHHHHHHHHHhh
Q 025536 231 LVVEDLSARQVYEKLLEA 248 (251)
Q Consensus 231 V~I~gls~e~v~~~L~~~ 248 (251)
|+|.+++++++...+...
T Consensus 83 v~i~~i~~d~~~~~~~~~ 100 (102)
T COG1872 83 VLIKNIDPDQLPERLAAL 100 (102)
T ss_pred EEecCCCHHHHHHHHHhh
Confidence 999999999999988764
No 6
>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]
Probab=99.93 E-value=5.6e-26 Score=184.80 Aligned_cols=117 Identities=49% Similarity=0.734 Sum_probs=102.7
Q ss_pred EEEcCcccccccccCC-CCCCCCCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHh
Q 025536 131 YVVDGALSTVAAETNP-QDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGK 209 (251)
Q Consensus 131 yi~~gAL~~~q~~~~g-~~~~vPpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk 209 (251)
|+.++++..-..++.. ++.++||||+...+|.|.|.||++|||++++|+++.++.+.|.|.|||.+|+||+||++||++
T Consensus 2 ~pkk~g~s~k~~~t~~~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeLl~ylsk 81 (125)
T KOG3276|consen 2 MPKKKGKSTKGAETSKVDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAELLEYLSK 81 (125)
T ss_pred ccccccccccccccCCCccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHHHHHHHH
Confidence 4455666665555554 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCcEEEEeccCCceeEEEEccC-CHHHHHHHHHh
Q 025536 210 VLSLRLSQMTLQRGWNNKSKLLVVEDL-SARQVYEKLLE 247 (251)
Q Consensus 210 ~LgVpks~VsIv~G~~SR~K~V~I~gl-s~e~v~~~L~~ 247 (251)
+||+++|+|++-+||+||+|+|.|+.. +.++..+.|..
T Consensus 82 vLgLRksdv~ldkG~kSrsKvv~i~~~~~~~e~i~~l~a 120 (125)
T KOG3276|consen 82 VLGLRKSDVTLDKGWKSRSKVVVIEDLSATQEYIELLEA 120 (125)
T ss_pred HhhhhhhheeecccccccceEEEEecCcccHHHHHHHhc
Confidence 999999999999999999999999865 44555555544
No 7
>PRK04021 hypothetical protein; Reviewed
Probab=99.93 E-value=1.7e-25 Score=175.74 Aligned_cols=88 Identities=30% Similarity=0.529 Sum_probs=82.9
Q ss_pred eeecCCCeEEEEEEEecCCcccceeeeeC--CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEE
Q 025536 155 ISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLV 232 (251)
Q Consensus 155 I~~~~~G~v~L~V~VkP~Akr~~I~~~~~--d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~ 232 (251)
|++..+| +.|.|+|+|+|++++|.++++ +.|+|+|+|||++||||+||++|||+.||+ +|+|++|++||+|+|+
T Consensus 2 ~~~~~~~-v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~~---~I~I~~G~~sr~K~v~ 77 (92)
T PRK04021 2 LKETKEG-VILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGA---EVEIIRGETSREKDLL 77 (92)
T ss_pred eEEeCCc-EEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCC---CEEEEecCCcCceEEE
Confidence 6777788 999999999999999999864 899999999999999999999999999996 8999999999999999
Q ss_pred EccCCHHHHHHHHH
Q 025536 233 VEDLSARQVYEKLL 246 (251)
Q Consensus 233 I~gls~e~v~~~L~ 246 (251)
|+|+|+|++..+|.
T Consensus 78 i~g~~~e~l~~~L~ 91 (92)
T PRK04021 78 VKGISLEEVKKKLK 91 (92)
T ss_pred EecCCHHHHHHHhc
Confidence 99999999999874
No 8
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=99.93 E-value=1.5e-25 Score=170.64 Aligned_cols=75 Identities=29% Similarity=0.543 Sum_probs=65.9
Q ss_pred CeEEEEEEEecCCcccceeeeeCC-eEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEEcc
Q 025536 161 GLVQVAIEVEDRAQRSAITRVNAD-DVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVED 235 (251)
Q Consensus 161 G~v~L~V~VkP~Akr~~I~~~~~d-~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~g 235 (251)
+.+.|.|+|+|+|++++|.+++++ .|+|+|+|||+|||||+||++|||+.|+||+|+|+|++|++||+|+|+|+|
T Consensus 2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr~K~v~i~~ 77 (77)
T PF02594_consen 2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSRNKVVRIEN 77 (77)
T ss_dssp TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCSEEEEEEE-
T ss_pred CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCCceEEEEeC
Confidence 449999999999999999999996 999999999999999999999999999999999999999999999999975
No 9
>PRK00647 hypothetical protein; Validated
Probab=99.92 E-value=8e-25 Score=173.23 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEEccCCHH
Q 025536 160 GGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSAR 239 (251)
Q Consensus 160 ~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~gls~e 239 (251)
+|.+.|.|+|+|+|++++|.++.++.|+|+|+|||+|||||+||++|||+.||||+++|+|++|++||+|+|+|.+ +.+
T Consensus 3 ~~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr~K~v~i~~-~~~ 81 (96)
T PRK00647 3 EGFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSRKKKVLLPR-SIK 81 (96)
T ss_pred CCcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEECh-hHH
Confidence 3559999999999999999999999999999999999999999999999999999999999999999999999965 455
Q ss_pred HHHHHH
Q 025536 240 QVYEKL 245 (251)
Q Consensus 240 ~v~~~L 245 (251)
..+..+
T Consensus 82 ~~l~~~ 87 (96)
T PRK00647 82 AILFEQ 87 (96)
T ss_pred HHHHHh
Confidence 444443
No 10
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=99.90 E-value=1.8e-23 Score=162.79 Aligned_cols=77 Identities=25% Similarity=0.510 Sum_probs=73.1
Q ss_pred eeecCCCeEEEEEEEecCCcccceeeeeC--CeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEE
Q 025536 155 ISQLEGGLVQVAIEVEDRAQRSAITRVNA--DDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLV 232 (251)
Q Consensus 155 I~~~~~G~v~L~V~VkP~Akr~~I~~~~~--d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~ 232 (251)
|+++++| +.|.|+|+|+|++++|.++++ +.|+|+|+|||+|||||+||++|||+.|++ +|+|++|++||+|+|+
T Consensus 1 ~~~~~~g-~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i~~G~tsR~K~v~ 76 (87)
T TIGR00251 1 VRENDDG-LLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEIVSGELSRQKTIK 76 (87)
T ss_pred CeEeCCe-EEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEEEecCCCCceEEE
Confidence 3566677 999999999999999999988 899999999999999999999999999999 9999999999999999
Q ss_pred Ecc
Q 025536 233 VED 235 (251)
Q Consensus 233 I~g 235 (251)
|.|
T Consensus 77 I~~ 79 (87)
T TIGR00251 77 IIN 79 (87)
T ss_pred EeC
Confidence 988
No 11
>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase. Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.
Probab=78.56 E-value=2.1 Score=31.45 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred cccccCCCCCceeEEEecCCCccceEEEEEcCcccc
Q 025536 104 QFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALST 139 (251)
Q Consensus 104 QyR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL~~ 139 (251)
-.|+-|+.||-+|+|.... ...+++|--|.|-.
T Consensus 46 ~~r~FC~~CGs~l~~~~~~---~~~~~~V~~g~ld~ 78 (92)
T PF04828_consen 46 VERYFCPTCGSPLFSEDER---DPDLVGVNAGTLDD 78 (92)
T ss_dssp CEEEEETTT--EEEEEESS---TTTEEEEEGGGBTT
T ss_pred CcCcccCCCCCeeecccCC---CCCEEEEEeEeeCC
Confidence 3457899999999998443 34577776666644
No 12
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=73.75 E-value=6 Score=33.71 Aligned_cols=58 Identities=7% Similarity=0.284 Sum_probs=37.7
Q ss_pred EEEEEEecCCcccceeeeeCCeEEEEE------eCCCCcChhhHHHHHHHHhhcCccCCcEEEE
Q 025536 164 QVAIEVEDRAQRSAITRVNADDVRVTV------AAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 164 ~L~V~VkP~Akr~~I~~~~~d~L~V~V------tApP~dGKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
.|.|.++++.....-....=+.+.|.. ...+.+.+..++|.++||+.|||++++|++.
T Consensus 124 ~I~v~l~~~~~~~~~~~~~Ve~V~I~~~~~~~~~~~~~~~~~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 124 EIKVTLSEEEEQKEEAVEPVEPVEIDIEKESDSSKSPEDSEEEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred EEEEEEcCCCccccccCCcccceEecccccccccccccchHHHHHHHHHHHHHhCCCHHHeEEe
Confidence 366677765432211100113355554 3456677889999999999999999999873
No 13
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=10 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.9
Q ss_pred cCceEEEEeCCCcccccccccCCCCCceeEEEecCCCccceEEEEEcCccc
Q 025536 88 EAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALS 138 (251)
Q Consensus 88 ~~~~v~irR~~G~iEkQyR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL~ 138 (251)
.+.+.|..... .+++. -|+.||-+|+|+.... + +++.|.-|+|-
T Consensus 55 ~g~~~~~~~s~-~~~r~---FC~~CGs~l~~~~~~~--~-~~~~v~~~~ld 98 (133)
T COG3791 55 RGLPTYYFSSG-SAGRG---FCPTCGSPLFWRGPDE--D-PFVGVNAGALD 98 (133)
T ss_pred CCCceEEeecC-CCCCe---ecccCCCceEEecCCC--C-ceEEEEEeeec
Confidence 34454544443 36555 7999999999997753 3 78888888876
No 14
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=69.57 E-value=12 Score=29.77 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=36.4
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCCC-CcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025536 165 VAIEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
|.|.|.+++.-. ..|-.+...-+.|++-- .+.+.| ++|.+||.+.||||+.+|-|.
T Consensus 37 i~V~v~~~~~m~-fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 37 IMVTVEDGQRMS-FGGSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEEESTEEE-ETTB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEeeCCceEE-ECCCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 778888888653 33434556666666543 244444 678999999999999999886
No 15
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=66.77 E-value=4.2 Score=38.47 Aligned_cols=32 Identities=16% Similarity=0.478 Sum_probs=24.6
Q ss_pred cccccCCCCCceeEEEecCCCccceEEEEEcCccc
Q 025536 104 QFRMNCIGCGLFVCYRSEETLEVASFIYVVDGALS 138 (251)
Q Consensus 104 QyR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL~ 138 (251)
+|+++|..|+=.|..+++|+ ++.|+. +.||--
T Consensus 75 rF~~kC~~C~~~i~~kTDPk--n~dY~~-~~Ga~R 106 (324)
T PF04502_consen 75 RFYIKCPRCSNEIEFKTDPK--NTDYVV-ESGARR 106 (324)
T ss_pred EEEEEcCCCCCEEeeecCCC--CCCeee-ecCeee
Confidence 58899999999999999996 555654 344443
No 16
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=61.38 E-value=18 Score=32.67 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=39.9
Q ss_pred cCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcC
Q 025536 158 LEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLS 212 (251)
Q Consensus 158 ~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~Lg 212 (251)
...| ..+.|.+++++++..|.-..++ .|.|.+|| |..++++..||.+..+
T Consensus 6 ~~~~-~~~~v~~~r~~r~~~i~i~~~~--~v~v~~P~--~~~~~~~~~fl~k~~~ 55 (223)
T COG1451 6 LGDG-LPLEVQVKRRAKRLTIRIPPGG--TVRVSVPP--GLSDEEVENFLAKKLG 55 (223)
T ss_pred cccC-ccEEEEEeecccceeEEecCCC--eEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 3455 7899999999999887654445 99999997 6788888888887665
No 17
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=59.14 E-value=37 Score=26.83 Aligned_cols=56 Identities=5% Similarity=0.074 Sum_probs=35.3
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCC-CCcCh----hhHHHHHHHHhhcCccCCcEEEE
Q 025536 165 VAIEVEDRAQRSAITRVNADDVRVTVAAP-AARGE----ANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtAp-P~dGK----AN~eLi~fLAk~LgVpks~VsIv 221 (251)
+.|.+.|...-. +.+-+++.+-|.|+.- ....+ --++|.++|++.||||+.+|-|.
T Consensus 39 ~~v~~~~~~~m~-f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 39 IMSGYDYQKHMR-FGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEeCCceEE-ECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 455555554421 2234456677777743 22223 34567788999999999999886
No 18
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=46.33 E-value=7 Score=33.04 Aligned_cols=36 Identities=31% Similarity=0.593 Sum_probs=22.8
Q ss_pred CeEEEEEeCCC-----CcChhhHHHHHHHHhhcCccCCcEEEEec
Q 025536 184 DDVRVTVAAPA-----ARGEANNELLEFMGKVLSLRLSQMTLQRG 223 (251)
Q Consensus 184 d~L~V~VtApP-----~dGKAN~eLi~fLAk~LgVpks~VsIv~G 223 (251)
+.=-|.|.-|+ .+|||| |+++||||.|. ..+.|-.|
T Consensus 82 e~~~IQv~LP~~AThGDK~KAN-EfckfLAk~l~---~EL~LFNG 122 (130)
T PF08968_consen 82 EQSYIQVVLPDGATHGDKGKAN-EFCKFLAKKLK---GELHLFNG 122 (130)
T ss_dssp TEEEEEEE--TT--HHHHHHHH-HHHHHHHHHH----EEEE-TTS
T ss_pred cceEEEEECCCCCccCcchhHH-HHHHHHHHHhh---heeEEecC
Confidence 44456666554 368999 58999999998 66666555
No 19
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=43.45 E-value=17 Score=32.42 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccccCCCCCceeEEEecCCCcc-ceEEEEEcCc
Q 025536 105 FRMNCIGCGLFVCYRSEETLEV-ASFIYVVDGA 136 (251)
Q Consensus 105 yR~~C~~CgLpl~Y~~~~~~~~-~~~~yi~~gA 136 (251)
.|.-|+.||-+||++.+++... ....||--|.
T Consensus 92 ~R~FC~~CGS~L~~~~e~~~~~~pgl~fV~~gl 124 (191)
T PRK05417 92 QRHACKECGVHMYGRIENKDHPFYGLDFVHTEL 124 (191)
T ss_pred EeeeCCCCCCccccccccccCCCCCeEEEehhh
Confidence 4556999999999997733111 1345555444
No 20
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=41.31 E-value=23 Score=32.83 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=17.2
Q ss_pred cc--ccCCCCCceeEEEecCC
Q 025536 105 FR--MNCIGCGLFVCYRSEET 123 (251)
Q Consensus 105 yR--~~C~~CgLpl~Y~~~~~ 123 (251)
|| ..|.+|+=+|+.+++|+
T Consensus 76 YRf~I~C~~C~n~i~~RTDPk 96 (272)
T COG5134 76 YRFSIKCHLCSNPIDVRTDPK 96 (272)
T ss_pred EEEEEEccCCCCceeeecCCC
Confidence 55 68999999999999996
No 21
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=40.40 E-value=12 Score=31.64 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.0
Q ss_pred ccCCCCCceeEEEecCCCccceEEEEEcC
Q 025536 107 MNCIGCGLFVCYRSEETLEVASFIYVVDG 135 (251)
Q Consensus 107 ~~C~~CgLpl~Y~~~~~~~~~~~~yi~~g 135 (251)
..|+.||.|||= ++ +.++--+-|
T Consensus 29 ~hCp~Cg~PLF~-Kd-----G~v~CPvC~ 51 (131)
T COG1645 29 KHCPKCGTPLFR-KD-----GEVFCPVCG 51 (131)
T ss_pred hhCcccCCccee-eC-----CeEECCCCC
Confidence 569999999997 33 445555544
No 22
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=39.80 E-value=78 Score=25.63 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=35.9
Q ss_pred EEEEEEecCCcccceeeeeCCeEEEEEe--CC---CCcChhhHHHHHHHHhhcCccCCcEEEEe
Q 025536 164 QVAIEVEDRAQRSAITRVNADDVRVTVA--AP---AARGEANNELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 164 ~L~V~VkP~Akr~~I~~~~~d~L~V~Vt--Ap---P~dGKAN~eLi~fLAk~LgVpks~VsIv~ 222 (251)
.|.|.+.|+..-. +.|-.+..--+.|+ .. ....+-.++|.++|.+.||||+.+|-|.-
T Consensus 38 yvmV~~~~~~~m~-fgGs~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f 100 (113)
T PTZ00450 38 FVMTAFSDSTPMS-FQGSTAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFY 100 (113)
T ss_pred HEEEEEeCCceEE-EcCCCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 4777888876532 22333333333333 32 22334456788999999999999998863
No 23
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=32.87 E-value=77 Score=31.64 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=36.9
Q ss_pred eeeee-CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025536 178 ITRVN-ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 178 I~~~~-~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
...++ ++.+.|.+......-=.+..+...+|+.||||..+|.++.|-|..
T Consensus 323 ~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~ 373 (547)
T PF02738_consen 323 RVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDT 373 (547)
T ss_dssp EEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTT
T ss_pred EEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcC
Confidence 33443 467888888887765678899999999999999999999998764
No 24
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=32.84 E-value=92 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=35.2
Q ss_pred ccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEE
Q 025536 175 RSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 175 r~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
.++|+.+.++.+.|-|.++=..-+-=..+++.+.+.+||+..+|+|.
T Consensus 150 ~davv~~~~~~v~VvV~~~~L~~~~~~~I~diV~~~~~v~~~~I~V~ 196 (196)
T PF12685_consen 150 EDAVVFIEDDSVDVVVKADKLSDAEAAQIIDIVMRETGVPAENISVT 196 (196)
T ss_dssp SEEEEE-SSSEEEEEEE-S---HHHHHHHHHHHHHHHC-STSEEEEE
T ss_pred CceEEEeeCCEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCcCeEEeC
Confidence 56677788899999999987666666789999999999999999984
No 25
>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase. The formation of S-(hydroxymethyl)glutathione synthase from glutathione and formaldehyde occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification.
Probab=32.13 E-value=25 Score=31.11 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred cccCCCCCceeEEEecCCCccceE---EEEEcCcc
Q 025536 106 RMNCIGCGLFVCYRSEETLEVASF---IYVVDGAL 137 (251)
Q Consensus 106 R~~C~~CgLpl~Y~~~~~~~~~~~---~yi~~gAL 137 (251)
|.-|+.||-+|||+...+ +.++ +||--|.|
T Consensus 89 R~FC~~CGS~L~~~~~~~--~~~~~g~v~I~aGtL 121 (182)
T TIGR02820 89 RHACKGCGTHMYGRIENK--DHPFYGLDFIHTELS 121 (182)
T ss_pred eecCCCCCCccccccccc--CCCccceeEEEEeec
Confidence 446999999999987421 1223 36766655
No 26
>PF09044 Kp4: Kp4; InterPro: IPR015131 Killer toxins are polypeptides secreted by some fungal species that kill sensitive cells of the same or related species, often functioning by creating pores in target cell membranes. The fungal killer toxin KP4 from the corn smut fungus, Ustilago maydis (Smut fungus), is encoded by a resident symbiotic double-stranded RNA virus, Ustilago maydis P4 virus (UmV4), within fungal cells. Unlike most killer toxins, KP4 is a single polypeptide []. KP4 inhibits voltage-gated calcium channels in mammalian cells, which in turn inhibits cell growth and division by blocking calcium import. KP4 adopts a structure consisting of a two-layer alpha/beta sandwich with a left-handed crossover []. ; PDB: 1KPT_B.
Probab=30.47 E-value=23 Score=29.92 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=11.6
Q ss_pred cccCCCCC-ceeEEEec-CCCccceEEE
Q 025536 106 RMNCIGCG-LFVCYRSE-ETLEVASFIY 131 (251)
Q Consensus 106 R~~C~~Cg-Lpl~Y~~~-~~~~~~~~~y 131 (251)
.+-|++|| +|++|-.. .+.+++..||
T Consensus 95 dHGC~~CGSvP~~y~~~gNdV~~GeLTv 122 (128)
T PF09044_consen 95 DHGCKVCGSVPYFYTQGGNDVSNGELTV 122 (128)
T ss_dssp HHT-SS-EEEE---SSTT--GGG-EEEE
T ss_pred hcCCCCCCCCCcccCCCCCcccCCeEEE
Confidence 37899997 78888543 4445566665
No 27
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host. The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....
Probab=29.61 E-value=24 Score=28.99 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=17.6
Q ss_pred ccccccCCCCCceeEEEecC
Q 025536 103 KQFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 103 kQyR~~C~~CgLpl~Y~~~~ 122 (251)
++|++.|+.|...++|-++-
T Consensus 1 ~~v~llC~kC~~~~C~~~DI 20 (123)
T PF11648_consen 1 ENVKLLCRKCKKFACSGSDI 20 (123)
T ss_dssp CGEEEEETTTTCEEEEGGGE
T ss_pred CceEEECCCCCceeEchhhe
Confidence 47999999999999998773
No 28
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=28.76 E-value=38 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=15.2
Q ss_pred cccCCCCCceeEEEecCC
Q 025536 106 RMNCIGCGLFVCYRSEET 123 (251)
Q Consensus 106 R~~C~~CgLpl~Y~~~~~ 123 (251)
-..|+.||-++.|.+.++
T Consensus 21 ~~~Cp~CG~~~~~~~~~~ 38 (46)
T PRK00398 21 GVRCPYCGYRILFKERPP 38 (46)
T ss_pred ceECCCCCCeEEEccCCC
Confidence 578999999999987764
No 29
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=26.60 E-value=51 Score=21.59 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=9.0
Q ss_pred eEEEEeCCCcccccccccCCCCC
Q 025536 91 KVLLRRGEGKLEKQFRMNCIGCG 113 (251)
Q Consensus 91 ~v~irR~~G~iEkQyR~~C~~Cg 113 (251)
++-.+-++| |..-|+.|..||
T Consensus 9 ~l~~~ip~g--d~r~R~vC~~Cg 29 (34)
T PF14803_consen 9 PLERRIPEG--DDRERLVCPACG 29 (34)
T ss_dssp B-EEE--TT---SS-EEEETTTT
T ss_pred hhhhhcCCC--CCccceECCCCC
Confidence 334444443 455566677776
No 30
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=25.72 E-value=42 Score=23.59 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=14.4
Q ss_pred ccccccCCCCCceeEEE
Q 025536 103 KQFRMNCIGCGLFVCYR 119 (251)
Q Consensus 103 kQyR~~C~~CgLpl~Y~ 119 (251)
+|+++.|+.|+-.|.|.
T Consensus 28 ~~~klrCGaCs~vl~~s 44 (46)
T PF11331_consen 28 NQQKLRCGACSEVLSFS 44 (46)
T ss_pred ceeEEeCCCCceeEEEe
Confidence 48999999999888775
No 31
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.53 E-value=72 Score=21.96 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHhhcCccCCcEEEE
Q 025536 197 GEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 197 GKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
-+--++|.+.|++.||+|+.+|.++
T Consensus 18 ~~l~~~it~~l~~~~~~p~~~v~V~ 42 (61)
T PRK02220 18 KALVKDVTAAVSKNTGAPAEHIHVI 42 (61)
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEE
Confidence 3445678888999999999999876
No 32
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=25.48 E-value=85 Score=21.17 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhhcCccCCcEEEE
Q 025536 198 EANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 198 KAN~eLi~fLAk~LgVpks~VsIv 221 (251)
+--++|.+.|++.||++...+.++
T Consensus 18 ~l~~~i~~~l~~~~g~~~~~v~V~ 41 (58)
T cd00491 18 ELIERVTEAVSEILGAPEATIVVI 41 (58)
T ss_pred HHHHHHHHHHHHHhCcCcccEEEE
Confidence 345788899999999999988876
No 33
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=24.88 E-value=1.4e+02 Score=32.12 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=42.0
Q ss_pred eeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCce
Q 025536 178 ITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKS 228 (251)
Q Consensus 178 I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~ 228 (251)
+....++.+.|.+......-=.+..+.+..|+.||||.++|+++.|-|+..
T Consensus 598 ~~~~~DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~ 648 (848)
T TIGR03311 598 NLAVEDGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALT 648 (848)
T ss_pred EEEEcCCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCC
Confidence 344457889998888877656788899999999999999999999987653
No 34
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.71 E-value=95 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHhhcCccCCcEEEE
Q 025536 198 EANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 198 KAN~eLi~fLAk~LgVpks~VsIv 221 (251)
+--++|.+.|++.||+|...+.++
T Consensus 19 ~l~~~it~~l~~~lg~~~~~v~V~ 42 (63)
T TIGR00013 19 QLIEGVTEAMAETLGANLESIVVI 42 (63)
T ss_pred HHHHHHHHHHHHHhCCCcccEEEE
Confidence 345788999999999999998876
No 35
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=23.29 E-value=1.2e+02 Score=32.13 Aligned_cols=49 Identities=6% Similarity=0.184 Sum_probs=41.4
Q ss_pred eeee-CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025536 179 TRVN-ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 179 ~~~~-~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
+.++ ++.+.|.+......-=.+..+.+..|+.||||..+|+++.|-|..
T Consensus 480 v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~ 529 (770)
T TIGR02416 480 IRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDT 529 (770)
T ss_pred EEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCC
Confidence 4444 577999998888776788999999999999999999999998754
No 36
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.23 E-value=85 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHhhcCccCCcEEEE
Q 025536 197 GEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 197 GKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
-+--++|-+.+++.||+|..++.++
T Consensus 18 ~~l~~~it~~l~~~lg~p~~~v~V~ 42 (64)
T PRK01964 18 KNLIREVTEAISATLDVPKERVRVI 42 (64)
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEE
Confidence 3445778888999999999999886
No 37
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=22.73 E-value=88 Score=21.60 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025536 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
-++|.+.|++.||+|...|.++
T Consensus 21 ~~~it~~l~~~~~~p~~~v~V~ 42 (62)
T PRK00745 21 VEEITRVTVETLGCPPESVDII 42 (62)
T ss_pred HHHHHHHHHHHcCCChhHEEEE
Confidence 4678888999999999999876
No 38
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=22.72 E-value=90 Score=21.50 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=17.9
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025536 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
-+++.+.+++.||.|+..|.++
T Consensus 20 ~~~it~~~~~~lg~~~~~i~V~ 41 (60)
T PF01361_consen 20 AEAITDAVVEVLGIPPERISVV 41 (60)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHHHHHHhCcCCCeEEEE
Confidence 4577888999999999999876
No 39
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=21.99 E-value=79 Score=32.37 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=39.2
Q ss_pred hcceeeccCCCCCCcccCCCCCCCCeeEecCCcceeee---ecccCceEEEEeCCC
Q 025536 47 SSSTIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARL---NIKEAGKVLLRRGEG 99 (251)
Q Consensus 47 ~~~~~~~~~~~~~~Le~LP~R~tD~ArVid~~kh~~Kl---~~~~~~~v~irR~~G 99 (251)
|+-|||.|. ++-|-|..||..+++..-|-.-+ |..+++.|+||==+.
T Consensus 244 sTDTIAv~~------dN~pFR~~dG~LlFRPgGHGALieNLN~ldaDiIFIKNIDN 293 (513)
T PF14134_consen 244 STDTIAVDP------DNTPFRNEDGSLLFRPGGHGALIENLNDLDADIIFIKNIDN 293 (513)
T ss_pred CCCeeEECC------CCCccCCCCCCEEeCCCcchHHHhhhccccCCEEEEeCccc
Confidence 567899877 67899999999999999998877 445789999997654
No 40
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=21.74 E-value=43 Score=24.20 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=7.4
Q ss_pred cccCCCCCcee
Q 025536 106 RMNCIGCGLFV 116 (251)
Q Consensus 106 R~~C~~CgLpl 116 (251)
|+.|++||..-
T Consensus 37 R~~CGkCgyTe 47 (51)
T COG1998 37 RWACGKCGYTE 47 (51)
T ss_pred eeEeccccceE
Confidence 67777777543
No 41
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=21.67 E-value=1.7e+02 Score=30.96 Aligned_cols=50 Identities=8% Similarity=0.002 Sum_probs=38.7
Q ss_pred eeeee-CCe--EEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025536 178 ITRVN-ADD--VRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 178 I~~~~-~d~--L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
.+.++ ++. +.|.+......-=.+..+.+..|+.||||.++|+++.|-|+.
T Consensus 469 ~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~ 521 (768)
T TIGR03196 469 RLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAK 521 (768)
T ss_pred EEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCC
Confidence 34455 343 666677766654578899999999999999999999998754
No 42
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=21.65 E-value=1.8e+02 Score=22.06 Aligned_cols=32 Identities=6% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCccCCcEEEEeccCCceeEEEEccCCHHHHHH
Q 025536 201 NELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYE 243 (251)
Q Consensus 201 ~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~gls~e~v~~ 243 (251)
+++-+.+++.||.+...|+|+ |+.++++..-+
T Consensus 23 ~~iT~a~~~~lg~~~e~v~V~-----------I~ev~~~~W~~ 54 (76)
T PRK01271 23 ADITDVIIRHLNSKDSSISIA-----------LQQIQPESWQA 54 (76)
T ss_pred HHHHHHHHHHhCcCcceEEEE-----------EEEcCHHHhhH
Confidence 678899999999999999876 66666666554
No 43
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.30 E-value=39 Score=21.60 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.0
Q ss_pred ccccCCCCCce
Q 025536 105 FRMNCIGCGLF 115 (251)
Q Consensus 105 yR~~C~~CgLp 115 (251)
|.++|..||-.
T Consensus 4 Y~y~C~~Cg~~ 14 (41)
T smart00834 4 YEYRCEDCGHT 14 (41)
T ss_pred EEEEcCCCCCE
Confidence 77899999953
No 44
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=20.91 E-value=3.4e+02 Score=21.13 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=40.1
Q ss_pred EEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEEEEccCCHHHHHH
Q 025536 187 RVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYE 243 (251)
Q Consensus 187 ~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V~I~gls~e~v~~ 243 (251)
.|.|..|+ |-.=.+|.+.|++.|++|...+.|-.-.....+.+-+.+-+.|.+..
T Consensus 12 tIaIrvp~--~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l~d~dle~aws 66 (80)
T cd06406 12 TVAIQVAR--GLSYATLLQKISSKLELPAEHITLSYKSEASGEDVILSDTNMEDVWS 66 (80)
T ss_pred EEEEEcCC--CCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCcChHHHHHHHH
Confidence 55666665 56778999999999999999999988777766666554444444433
No 45
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.82 E-value=53 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=10.2
Q ss_pred ccCCCCCceeEE
Q 025536 107 MNCIGCGLFVCY 118 (251)
Q Consensus 107 ~~C~~CgLpl~Y 118 (251)
..|..||.||+=
T Consensus 18 ~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 18 EHCPDCGTPLMR 29 (41)
T ss_pred CccCCCCCeeEE
Confidence 369999999985
No 46
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.60 E-value=1.2e+02 Score=21.35 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhhcCccCCcEEEE
Q 025536 198 EANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 198 KAN~eLi~fLAk~LgVpks~VsIv 221 (251)
+--++|.+.+++.||+|...|+++
T Consensus 19 ~L~~~it~a~~~~~~~p~~~v~V~ 42 (60)
T PRK02289 19 ALAREVTEVVSRIAKAPKEAIHVF 42 (60)
T ss_pred HHHHHHHHHHHHHhCcCcceEEEE
Confidence 345778899999999999999876
No 47
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.31 E-value=54 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=10.2
Q ss_pred ccccCCCCCceeE
Q 025536 105 FRMNCIGCGLFVC 117 (251)
Q Consensus 105 yR~~C~~CgLpl~ 117 (251)
-|+.|++||+..|
T Consensus 36 ~r~~C~~Cgyt~~ 48 (50)
T PRK00432 36 DRWHCGKCGYTEF 48 (50)
T ss_pred CcEECCCcCCEEe
Confidence 4889999997654
No 48
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=20.25 E-value=5.4e+02 Score=26.65 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=79.7
Q ss_pred eeeccCCCCCCcccCCCCCCCCeeEecCCcceeee---------------ecccC-ceEEEEeCCCcccc-cccccCCCC
Q 025536 50 TIASTVDPTSSSLKMPKRKTDKAYVLDKTKHLARL---------------NIKEA-GKVLLRRGEGKLEK-QFRMNCIGC 112 (251)
Q Consensus 50 ~~~~~~~~~~~Le~LP~R~tD~ArVid~~kh~~Kl---------------~~~~~-~~v~irR~~G~iEk-QyR~~C~~C 112 (251)
.++.+-|.-..|..||+|+.|=+.=+..+..++-. .+.+. =..+|-=+||.+-+ +-|-.|..=
T Consensus 275 Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~~~p~~egHvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~~~ 354 (545)
T KOG2531|consen 275 VVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKEYHPSPEGHVFCHPTDPNHYMGMLCFKNGSLTRERIRNESANG 354 (545)
T ss_pred EEecCCCChHHhhCccccCCceEEEecCcceEEEEcCCCCCCCCcceeccCCCccceEEEEEecCChHHHHHHhhcccCC
Confidence 34555555667899999999988888876544433 23322 24555555553322 334444433
Q ss_pred CceeEEE---ecCCCccceEEEEEcCcccccccccCCCCCCCCCceeecCCCeEEEEEEEecCCccc-ceeee-------
Q 025536 113 GLFVCYR---SEETLEVASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRS-AITRV------- 181 (251)
Q Consensus 113 gLpl~Y~---~~~~~~~~~~~yi~~gAL~~~q~~~~g~~~~vPpcI~~~~~G~v~L~V~VkP~Akr~-~I~~~------- 181 (251)
.--.||+ .++.++++..-|.++ +.+.+|+- ..|.....++-+|.+... ++..+
T Consensus 355 sWd~Fne~L~~t~~gn~g~~g~~f~------------~~EIvP~~----~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e~ 418 (545)
T KOG2531|consen 355 SWDKFNEILDSTPSGNNGNLGVYFP------------EREIVPSV----PKGTLRFIFENKELSAERIEVAKFSDPEIEA 418 (545)
T ss_pred CHHHHHHHhccCcCCCCCceeEecc------------cccccCCC----CccceEEEecCCccchhhcccccCCCchHHH
Confidence 3334432 222222222211111 24556643 344455555555555422 11111
Q ss_pred ---------------------eCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcE
Q 025536 182 ---------------------NADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQM 218 (251)
Q Consensus 182 ---------------------~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~V 218 (251)
.....+|-++.-+- .|++++..||.+||-|...+
T Consensus 419 rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS---~N~~Ilq~iadVf~apVy~~ 473 (545)
T KOG2531|consen 419 RALVEGQFLSKRARAEPLGFKSNPPTRILVTGGAS---RNEAILQIIADVFGAPVYTI 473 (545)
T ss_pred HHHHHHhHhHhhhhhccccCCCCCCceEEEecCcc---ccHHHHHHHHHHhCCCeEee
Confidence 11334555555443 69999999999999886655
Done!