BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025537
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
K + F+AKD+ AI Y+Q I+ ++P+ Y R L+YL + ALGDA +
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 207 AQVVSPDWPTALYLQAACLFSLG 229
A + + Y +AA +LG
Sbjct: 73 AIELDKKYIKGYYRRAASNMALG 95
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
K + F+AKD+ AI Y+Q I+ ++P+ Y R L+YL + ALGDA +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240
A + + Y +AA +LG R L+D
Sbjct: 66 AIELDKKYIKGYYRRAASNMALG---KFRAALRD 96
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 206
K + F+AKD+ AI Y+Q I+ ++P+ Y R L+YL + AL DA +
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 207 AQVVSPDWPTALYLQAACLFSLG 229
A + + Y +AA +LG
Sbjct: 81 AIELDKKYIKGYYRRAASNMALG 103
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209
K G+ A K++S AID YTQ + +P + R +Y + ++A DA A V
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 210 VSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245
V P + A F + A+E + G E
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
MLLD + G L++ K L+D L+G++ ++E +L+++A C QS ER
Sbjct: 255 MLLDWVKG----------LLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMER 304
Query: 61 PNAKSLV 67
P +V
Sbjct: 305 PKMSEVV 311
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 1 MLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER 60
MLLD + G L++ K L+D L+G++ ++E +L+++A C QS ER
Sbjct: 247 MLLDWVKG----------LLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMER 296
Query: 61 PNAKSLV 67
P +V
Sbjct: 297 PKMSEVV 303
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209
K G+ F AK+F+ AI Y I+ P Y+ Y+ ++ + +A
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 210 VSPDWPTALYLQAACLFSLGMENDA 234
+ PD AL +A+ SLG DA
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDA 112
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209
K G+ F AK+F+ AI Y I+ P Y+ Y+ ++ + +A
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 210 VSPDWPTALYLQAACLFSLGMENDA 234
+ PD AL +A+ SLG DA
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDA 108
>pdb|1PX5|A Chain A, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
pdb|1PX5|B Chain B, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
Length = 349
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 53 LQSEARERPNAKSLVISLMSLQKEAE---VPSYVLLGIQHETAPSTKP 97
+QS RE P A S V+S LQ+E E +P++ LG + P KP
Sbjct: 120 VQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALG---QWTPGYKP 164
>pdb|3NRC|A Chain A, Crystal Stucture Of The Francisella Tularensis Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nad+
And Triclosan
pdb|3NRC|B Chain B, Crystal Stucture Of The Francisella Tularensis Enoyl-Acyl
Carrier Protein Reductase (Fabi) In Complex With Nad+
And Triclosan
pdb|3UIC|A Chain A, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|B Chain B, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|C Chain C, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|D Chain D, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|E Chain E, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|F Chain F, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|G Chain G, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|H Chain H, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|I Chain I, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|J Chain J, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|K Chain K, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|L Chain L, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|M Chain M, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|N Chain N, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|O Chain O, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
pdb|3UIC|P Chain P, Crystal Structure Of Fabi, An Enoyl Reductase From F.
Tularensis, In Complex With A Novel And Potent Inhibitor
Length = 280
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 53 LQSEARER-PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLD 111
L E R N + +++L + E +PSY +G+ + +T + LGE +++
Sbjct: 146 LAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVN 205
Query: 112 LTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDT-AFRAKDFSTAIDCYT 170
+ I + + L + S +++ ++ + G+T AF D +T I
Sbjct: 206 AVSAGPI-KTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEV 264
Query: 171 QFIDGG 176
+D G
Sbjct: 265 VHVDAG 270
>pdb|2JJY|A Chain A, Crystal Structure Of Francisella Tularensis Enoyl
Reductase (Ftfabi) With Bound Nad
pdb|2JJY|B Chain B, Crystal Structure Of Francisella Tularensis Enoyl
Reductase (Ftfabi) With Bound Nad
pdb|2JJY|C Chain C, Crystal Structure Of Francisella Tularensis Enoyl
Reductase (Ftfabi) With Bound Nad
pdb|2JJY|D Chain D, Crystal Structure Of Francisella Tularensis Enoyl
Reductase (Ftfabi) With Bound Nad
Length = 268
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 53 LQSEARER-PNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLD 111
L E R N + +++L + E +PSY +G+ + +T + LGE +++
Sbjct: 126 LAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVN 185
Query: 112 LTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDT-AFRAKDFSTAIDCYT 170
+ I + + L + S +++ ++ + G+T AF D +T I
Sbjct: 186 AVSAGPI-KTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEV 244
Query: 171 QFIDGG 176
+D G
Sbjct: 245 VHVDAG 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,073,258
Number of Sequences: 62578
Number of extensions: 267543
Number of successful extensions: 609
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 14
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)