Query 025537
Match_columns 251
No_of_seqs 335 out of 3476
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.9 2E-24 4.4E-29 173.8 11.7 107 142-249 77-183 (304)
2 KOG0548 Molecular co-chaperone 99.8 7.5E-19 1.6E-23 150.9 11.2 107 142-249 354-460 (539)
3 KOG0548 Molecular co-chaperone 99.8 1.1E-18 2.4E-23 149.9 9.9 103 146-249 2-104 (539)
4 KOG4234 TPR repeat-containing 99.8 4E-18 8.6E-23 130.0 11.4 108 142-249 91-202 (271)
5 PRK15359 type III secretion sy 99.8 1.2E-17 2.5E-22 125.6 12.6 101 148-249 26-126 (144)
6 KOG4648 Uncharacterized conser 99.7 3.7E-18 8E-23 139.9 7.7 104 145-249 96-199 (536)
7 KOG0547 Translocase of outer m 99.7 2.2E-17 4.8E-22 140.6 10.6 96 143-239 112-207 (606)
8 PLN03088 SGT1, suppressor of 99.7 5.9E-17 1.3E-21 139.2 13.3 102 147-249 3-104 (356)
9 KOG0543 FKBP-type peptidyl-pro 99.7 1.5E-16 3.3E-21 133.4 11.3 108 142-249 204-325 (397)
10 PRK11189 lipoprotein NlpI; Pro 99.7 1.3E-15 2.8E-20 128.0 14.4 104 144-248 62-165 (296)
11 TIGR02552 LcrH_SycD type III s 99.7 1.4E-15 3.1E-20 112.8 13.0 107 142-249 13-119 (135)
12 PRK15363 pathogenicity island 99.7 1.6E-15 3.5E-20 113.0 13.0 102 143-245 32-133 (157)
13 KOG0551 Hsp90 co-chaperone CNS 99.6 1.1E-15 2.4E-20 124.8 9.8 103 145-247 80-185 (390)
14 PRK10370 formate-dependent nit 99.6 6.4E-15 1.4E-19 116.5 12.7 107 142-249 69-178 (198)
15 KOG4626 O-linked N-acetylgluco 99.6 7.6E-15 1.6E-19 128.5 11.1 106 142-248 384-489 (966)
16 KOG4626 O-linked N-acetylgluco 99.6 8.8E-15 1.9E-19 128.1 10.9 115 132-247 339-454 (966)
17 KOG0550 Molecular chaperone (D 99.6 5.3E-15 1.1E-19 123.9 8.8 106 142-247 245-353 (486)
18 TIGR00990 3a0801s09 mitochondr 99.6 2.7E-14 5.8E-19 131.6 14.4 101 144-246 125-225 (615)
19 PF13414 TPR_11: TPR repeat; P 99.6 1.2E-14 2.7E-19 95.1 7.8 67 180-246 2-69 (69)
20 KOG4642 Chaperone-dependent E3 99.5 2.8E-14 6E-19 111.8 7.9 99 146-245 10-108 (284)
21 KOG0624 dsRNA-activated protei 99.5 5.9E-14 1.3E-18 115.4 9.8 107 142-249 34-140 (504)
22 TIGR02795 tol_pal_ybgF tol-pal 99.5 2.7E-13 5.8E-18 97.9 12.2 103 146-249 2-110 (119)
23 TIGR00990 3a0801s09 mitochondr 99.5 1.8E-13 4E-18 126.1 14.2 105 143-248 328-432 (615)
24 PF13414 TPR_11: TPR repeat; P 99.5 4.4E-14 9.5E-19 92.4 6.5 67 145-212 2-69 (69)
25 KOG0547 Translocase of outer m 99.5 1.4E-13 3E-18 117.7 10.6 102 146-248 326-427 (606)
26 KOG0545 Aryl-hydrocarbon recep 99.5 2E-13 4.3E-18 107.5 10.2 106 143-248 175-297 (329)
27 cd00189 TPR Tetratricopeptide 99.5 5.5E-13 1.2E-17 90.9 11.1 99 148-247 2-100 (100)
28 KOG0376 Serine-threonine phosp 99.5 1.9E-14 4.2E-19 123.0 4.5 103 146-249 4-106 (476)
29 PRK02603 photosystem I assembl 99.5 1.6E-12 3.4E-17 100.7 13.7 107 142-248 31-153 (172)
30 KOG1125 TPR repeat-containing 99.5 1.3E-13 2.8E-18 119.9 8.3 104 145-249 429-532 (579)
31 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-12 3E-17 109.7 13.8 99 142-242 94-192 (296)
32 KOG1126 DNA-binding cell divis 99.5 5.8E-14 1.3E-18 123.7 5.3 107 142-249 417-523 (638)
33 PRK12370 invasion protein regu 99.5 9E-13 2E-17 119.9 13.1 105 143-248 292-405 (553)
34 PRK09782 bacteriophage N4 rece 99.4 1.5E-12 3.2E-17 124.2 13.9 103 146-249 609-711 (987)
35 PF12895 Apc3: Anaphase-promot 99.4 3.2E-13 6.9E-18 91.9 6.5 82 159-241 2-84 (84)
36 PRK12370 invasion protein regu 99.4 3.5E-12 7.6E-17 116.1 14.8 103 142-245 334-436 (553)
37 CHL00033 ycf3 photosystem I as 99.4 8.7E-12 1.9E-16 96.2 13.6 105 144-248 33-153 (168)
38 PRK15359 type III secretion sy 99.4 2.9E-12 6.3E-17 96.3 9.9 87 142-229 54-140 (144)
39 COG3063 PilF Tfp pilus assembl 99.4 7.8E-12 1.7E-16 97.9 12.4 115 134-249 56-173 (250)
40 KOG4555 TPR repeat-containing 99.4 1.9E-11 4E-16 87.6 12.8 103 143-246 40-146 (175)
41 PLN02789 farnesyltranstransfer 99.4 2.2E-11 4.9E-16 102.9 15.0 112 137-249 62-176 (320)
42 TIGR03302 OM_YfiO outer membra 99.4 8.7E-12 1.9E-16 101.2 11.8 103 146-249 33-149 (235)
43 PRK15174 Vi polysaccharide exp 99.3 2.2E-11 4.8E-16 112.8 15.1 106 142-248 280-385 (656)
44 PRK15179 Vi polysaccharide bio 99.3 1.5E-11 3.3E-16 113.4 13.6 103 144-247 84-186 (694)
45 PRK15331 chaperone protein Sic 99.3 1.4E-11 3E-16 92.5 10.9 102 144-247 35-136 (165)
46 TIGR02521 type_IV_pilW type IV 99.3 2.8E-11 6E-16 96.7 13.6 106 142-248 61-168 (234)
47 PF13432 TPR_16: Tetratricopep 99.3 4.1E-12 8.9E-17 82.0 7.1 63 186-248 2-64 (65)
48 PF13432 TPR_16: Tetratricopep 99.3 7.4E-12 1.6E-16 80.8 7.9 65 150-215 1-65 (65)
49 PRK15179 Vi polysaccharide bio 99.3 2.3E-11 5E-16 112.2 13.9 110 136-246 109-219 (694)
50 KOG1155 Anaphase-promoting com 99.3 2E-11 4.3E-16 104.1 12.1 110 136-246 353-463 (559)
51 KOG1126 DNA-binding cell divis 99.3 2.2E-12 4.8E-17 113.9 6.7 100 147-247 456-555 (638)
52 PRK10370 formate-dependent nit 99.3 1.9E-11 4E-16 96.7 11.2 90 159-249 52-144 (198)
53 TIGR02521 type_IV_pilW type IV 99.3 5E-11 1.1E-15 95.2 13.7 103 144-247 97-201 (234)
54 PRK10803 tol-pal system protei 99.3 4.4E-11 9.6E-16 98.3 13.0 102 147-249 143-251 (263)
55 COG3063 PilF Tfp pilus assembl 99.3 4.1E-11 8.8E-16 93.9 11.7 100 142-242 99-200 (250)
56 PRK15174 Vi polysaccharide exp 99.3 3.4E-11 7.3E-16 111.6 13.1 105 143-248 243-351 (656)
57 COG5010 TadD Flp pilus assembl 99.3 5.8E-11 1.3E-15 94.7 12.0 104 143-247 97-200 (257)
58 KOG1155 Anaphase-promoting com 99.3 2.9E-11 6.4E-16 103.0 9.4 100 149-249 333-432 (559)
59 COG4235 Cytochrome c biogenesi 99.2 1E-10 2.2E-15 95.4 11.6 109 140-249 150-261 (287)
60 PRK09782 bacteriophage N4 rece 99.2 1.1E-10 2.4E-15 111.5 13.1 95 152-248 582-676 (987)
61 KOG1308 Hsp70-interacting prot 99.2 9.5E-12 2E-16 102.5 4.4 105 142-247 110-214 (377)
62 PLN02789 farnesyltranstransfer 99.2 1.7E-10 3.7E-15 97.5 11.8 110 140-250 100-218 (320)
63 PRK11447 cellulose synthase su 99.2 1.6E-10 3.4E-15 113.7 13.0 107 142-249 299-419 (1157)
64 KOG1173 Anaphase-promoting com 99.2 3.6E-11 7.9E-16 104.6 7.4 108 142-249 410-523 (611)
65 PRK10049 pgaA outer membrane p 99.2 3.1E-10 6.7E-15 107.1 14.0 106 142-249 45-150 (765)
66 PF13429 TPR_15: Tetratricopep 99.2 5.6E-11 1.2E-15 99.1 7.9 104 144-248 144-247 (280)
67 PF13512 TPR_18: Tetratricopep 99.2 7.5E-10 1.6E-14 81.4 12.7 104 146-249 10-133 (142)
68 TIGR02552 LcrH_SycD type III s 99.2 1.6E-10 3.4E-15 85.5 8.9 81 167-248 4-84 (135)
69 KOG4162 Predicted calmodulin-b 99.2 7E-10 1.5E-14 99.7 14.0 106 142-248 680-787 (799)
70 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 1.8E-10 3.8E-15 99.3 9.7 70 141-211 70-142 (453)
71 PRK11447 cellulose synthase su 99.2 3.9E-10 8.4E-15 110.9 13.4 106 142-248 381-528 (1157)
72 TIGR02917 PEP_TPR_lipo putativ 99.2 6E-10 1.3E-14 105.7 13.9 103 145-248 124-226 (899)
73 KOG1125 TPR repeat-containing 99.2 4.8E-10 1E-14 98.0 11.9 118 131-249 303-498 (579)
74 KOG0553 TPR repeat-containing 99.1 2E-10 4.3E-15 93.4 8.6 90 142-232 111-200 (304)
75 PRK10049 pgaA outer membrane p 99.1 8.1E-10 1.8E-14 104.3 13.7 103 146-249 359-461 (765)
76 KOG0624 dsRNA-activated protei 99.1 1.3E-09 2.7E-14 90.3 12.9 107 142-249 151-257 (504)
77 TIGR03302 OM_YfiO outer membra 99.1 9.5E-10 2.1E-14 89.2 12.3 102 146-248 70-199 (235)
78 PF13371 TPR_9: Tetratricopept 99.1 4.3E-10 9.2E-15 74.1 8.3 69 153-222 2-70 (73)
79 PRK11788 tetratricopeptide rep 99.1 1.2E-09 2.6E-14 95.0 13.5 98 149-247 183-281 (389)
80 PF14559 TPR_19: Tetratricopep 99.1 2.1E-10 4.5E-15 74.5 6.3 67 156-223 1-67 (68)
81 TIGR02917 PEP_TPR_lipo putativ 99.1 7.2E-10 1.6E-14 105.2 12.5 104 143-248 767-870 (899)
82 KOG2076 RNA polymerase III tra 99.1 1.3E-09 2.9E-14 99.4 13.1 107 139-246 166-272 (895)
83 PRK11788 tetratricopeptide rep 99.1 1.4E-09 3.1E-14 94.6 13.0 104 144-248 212-315 (389)
84 KOG1187 Serine/threonine prote 99.1 4.7E-11 1E-15 102.8 3.6 74 1-74 267-353 (361)
85 PF12688 TPR_5: Tetratrico pep 99.1 3.9E-09 8.5E-14 76.2 12.7 97 147-243 2-103 (120)
86 KOG2076 RNA polymerase III tra 99.1 1.9E-09 4.1E-14 98.5 13.2 128 115-242 381-510 (895)
87 PF13371 TPR_9: Tetratricopept 99.1 4.8E-10 1E-14 73.9 6.8 62 188-249 2-63 (73)
88 PLN03088 SGT1, suppressor of 99.1 8.9E-10 1.9E-14 94.9 10.3 87 142-229 32-118 (356)
89 PF09976 TPR_21: Tetratricopep 99.0 4.3E-09 9.4E-14 79.1 11.5 97 145-242 47-145 (145)
90 PRK10866 outer membrane biogen 99.0 6.1E-09 1.3E-13 85.0 13.0 103 146-249 32-158 (243)
91 KOG0550 Molecular chaperone (D 99.0 2.7E-10 5.9E-15 96.0 5.2 97 142-239 45-141 (486)
92 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1E-09 2.2E-14 94.6 8.2 71 175-246 70-144 (453)
93 COG1729 Uncharacterized protei 99.0 1.5E-08 3.2E-13 82.0 12.5 103 146-248 141-248 (262)
94 COG4785 NlpI Lipoprotein NlpI, 99.0 2.4E-09 5.1E-14 83.5 7.6 106 142-248 61-166 (297)
95 PF06552 TOM20_plant: Plant sp 99.0 2.4E-09 5.1E-14 81.3 7.4 87 162-249 7-114 (186)
96 PF13525 YfiO: Outer membrane 98.9 1.3E-08 2.8E-13 80.9 11.6 105 145-249 4-124 (203)
97 cd05804 StaR_like StaR_like; a 98.9 9.1E-09 2E-13 88.5 11.6 101 145-246 113-217 (355)
98 PRK15363 pathogenicity island 98.9 5.7E-09 1.2E-13 78.1 8.7 76 173-249 27-103 (157)
99 COG5010 TadD Flp pilus assembl 98.9 1.2E-08 2.5E-13 81.7 10.7 106 142-249 63-168 (257)
100 PF13424 TPR_12: Tetratricopep 98.9 1.4E-09 2.9E-14 72.7 4.6 66 180-245 4-76 (78)
101 COG4783 Putative Zn-dependent 98.9 1.2E-08 2.6E-13 87.9 11.4 101 144-245 338-438 (484)
102 PF14559 TPR_19: Tetratricopep 98.9 3.2E-09 7E-14 68.8 6.2 58 191-248 1-58 (68)
103 COG4783 Putative Zn-dependent 98.9 2.1E-08 4.5E-13 86.5 12.0 106 144-250 304-409 (484)
104 cd05804 StaR_like StaR_like; a 98.9 4.5E-08 9.9E-13 84.1 14.1 66 182-247 115-180 (355)
105 PRK14574 hmsH outer membrane p 98.9 1.6E-08 3.4E-13 95.2 11.8 96 151-247 73-168 (822)
106 PRK11906 transcriptional regul 98.9 2E-08 4.4E-13 86.9 10.6 89 159-248 317-405 (458)
107 PF13429 TPR_15: Tetratricopep 98.8 6.3E-09 1.4E-13 86.8 6.8 102 142-244 176-277 (280)
108 KOG0543 FKBP-type peptidyl-pro 98.8 6E-08 1.3E-12 82.2 10.8 99 147-246 258-357 (397)
109 CHL00033 ycf3 photosystem I as 98.8 3.1E-08 6.7E-13 76.3 8.5 95 154-248 7-105 (168)
110 KOG1128 Uncharacterized conser 98.8 3.8E-08 8.2E-13 88.4 9.7 101 145-246 484-584 (777)
111 PRK14574 hmsH outer membrane p 98.8 8.4E-08 1.8E-12 90.4 12.2 102 146-249 102-203 (822)
112 PF13424 TPR_12: Tetratricopep 98.8 2.5E-08 5.5E-13 66.5 6.2 68 144-211 3-76 (78)
113 PRK10153 DNA-binding transcrip 98.8 1.4E-07 3E-12 84.9 12.5 105 142-248 372-486 (517)
114 KOG3060 Uncharacterized conser 98.7 1.7E-07 3.6E-12 74.8 11.2 107 142-249 116-225 (289)
115 KOG1310 WD40 repeat protein [G 98.7 4.4E-08 9.5E-13 85.2 8.2 108 139-247 367-477 (758)
116 KOG2003 TPR repeat-containing 98.7 2.5E-08 5.4E-13 85.5 6.5 103 145-248 489-591 (840)
117 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.8E-07 3.9E-12 81.0 11.6 94 147-241 201-294 (395)
118 KOG1840 Kinesin light chain [C 98.7 9.6E-08 2.1E-12 84.9 10.1 104 143-247 196-315 (508)
119 PRK02603 photosystem I assembl 98.7 7.3E-08 1.6E-12 74.5 8.2 69 180-248 34-105 (172)
120 KOG3060 Uncharacterized conser 98.7 2.7E-07 5.9E-12 73.6 11.0 98 149-247 89-186 (289)
121 KOG1128 Uncharacterized conser 98.7 1E-07 2.3E-12 85.7 9.7 105 142-247 515-619 (777)
122 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.3E-07 2.9E-12 67.8 8.6 68 181-248 2-72 (119)
123 cd00189 TPR Tetratricopeptide 98.7 8.8E-08 1.9E-12 64.6 7.2 66 183-248 2-67 (100)
124 KOG2002 TPR-containing nuclear 98.6 8.3E-08 1.8E-12 88.6 8.0 108 142-249 266-376 (1018)
125 KOG1129 TPR repeat-containing 98.6 1.3E-07 2.8E-12 78.1 8.3 106 142-247 354-461 (478)
126 KOG1174 Anaphase-promoting com 98.6 2E-07 4.4E-12 79.1 9.3 58 143-201 331-388 (564)
127 PF09976 TPR_21: Tetratricopep 98.6 2.1E-06 4.5E-11 64.4 13.8 97 143-240 8-110 (145)
128 PF00515 TPR_1: Tetratricopept 98.6 7.4E-08 1.6E-12 53.4 4.4 34 215-248 1-34 (34)
129 PRK11906 transcriptional regul 98.6 2.6E-07 5.7E-12 80.1 9.9 100 148-248 257-371 (458)
130 PRK10153 DNA-binding transcrip 98.6 5.7E-07 1.2E-11 81.0 12.2 102 145-247 338-452 (517)
131 KOG1840 Kinesin light chain [C 98.6 3.7E-07 8E-12 81.2 10.5 105 143-247 280-399 (508)
132 KOG2002 TPR-containing nuclear 98.6 4.7E-07 1E-11 83.8 11.3 108 142-249 303-414 (1018)
133 PF13431 TPR_17: Tetratricopep 98.6 7.5E-08 1.6E-12 53.3 3.6 32 204-235 2-33 (34)
134 TIGR00540 hemY_coli hemY prote 98.6 5.7E-07 1.2E-11 79.1 10.9 103 145-248 262-370 (409)
135 PRK14720 transcript cleavage f 98.6 7.1E-07 1.5E-11 84.0 11.7 102 142-247 61-181 (906)
136 KOG1129 TPR repeat-containing 98.5 1E-06 2.3E-11 72.9 10.9 97 151-249 228-324 (478)
137 PF07719 TPR_2: Tetratricopept 98.5 2.4E-07 5.1E-12 51.2 4.5 34 215-248 1-34 (34)
138 COG4235 Cytochrome c biogenesi 98.5 1.3E-06 2.8E-11 71.7 10.4 89 160-249 136-227 (287)
139 PF13428 TPR_14: Tetratricopep 98.5 3.5E-07 7.5E-12 53.9 5.2 42 182-223 2-43 (44)
140 COG2956 Predicted N-acetylgluc 98.5 1.9E-06 4.1E-11 71.1 11.2 100 148-247 143-246 (389)
141 PRK10747 putative protoheme IX 98.5 1.6E-06 3.4E-11 76.0 11.4 84 160-245 308-391 (398)
142 TIGR00540 hemY_coli hemY prote 98.5 6.7E-06 1.4E-10 72.4 15.1 100 145-244 117-216 (409)
143 PF00515 TPR_1: Tetratricopept 98.5 3.1E-07 6.6E-12 50.8 4.2 34 181-214 1-34 (34)
144 COG2956 Predicted N-acetylgluc 98.5 2.2E-06 4.8E-11 70.8 10.9 102 145-247 179-281 (389)
145 KOG0495 HAT repeat protein [RN 98.5 1.7E-06 3.7E-11 77.3 10.9 104 143-248 615-718 (913)
146 PRK14720 transcript cleavage f 98.5 1.7E-06 3.7E-11 81.4 11.5 102 144-248 29-149 (906)
147 PF12895 Apc3: Anaphase-promot 98.5 4E-07 8.8E-12 61.6 5.4 61 145-207 24-84 (84)
148 KOG1173 Anaphase-promoting com 98.5 1.1E-06 2.4E-11 77.2 9.3 106 142-248 308-413 (611)
149 PF13431 TPR_17: Tetratricopep 98.4 1.7E-07 3.7E-12 51.9 2.7 33 168-201 1-33 (34)
150 PRK10747 putative protoheme IX 98.4 3.8E-06 8.3E-11 73.7 12.6 99 146-245 118-217 (398)
151 KOG4234 TPR repeat-containing 98.4 3.8E-06 8.3E-11 65.0 10.4 76 144-220 132-207 (271)
152 KOG1174 Anaphase-promoting com 98.4 1.9E-06 4.1E-11 73.3 9.5 105 144-249 298-402 (564)
153 KOG1156 N-terminal acetyltrans 98.4 1.3E-06 2.9E-11 77.7 8.9 106 142-248 37-142 (700)
154 COG4105 ComL DNA uptake lipopr 98.4 1.5E-05 3.3E-10 64.2 13.2 104 146-249 34-150 (254)
155 COG4700 Uncharacterized protei 98.4 1E-05 2.2E-10 62.0 11.6 102 145-247 88-192 (251)
156 KOG1156 N-terminal acetyltrans 98.3 2.3E-06 4.9E-11 76.4 8.2 103 142-245 71-173 (700)
157 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.5E-11 47.7 4.9 34 181-214 1-34 (34)
158 PF14938 SNAP: Soluble NSF att 98.3 4.8E-06 1E-10 69.6 9.9 106 144-249 112-230 (282)
159 PRK10803 tol-pal system protei 98.3 5.3E-06 1.2E-10 68.4 9.8 69 181-249 142-214 (263)
160 KOG1127 TPR repeat-containing 98.3 5.7E-06 1.2E-10 77.1 10.5 99 150-249 6-108 (1238)
161 PF03704 BTAD: Bacterial trans 98.3 7E-05 1.5E-09 56.1 14.5 98 147-244 7-125 (146)
162 KOG1127 TPR repeat-containing 98.3 2.4E-06 5.2E-11 79.5 7.5 96 148-244 564-659 (1238)
163 PF06552 TOM20_plant: Plant sp 98.3 5.4E-06 1.2E-10 63.2 8.0 82 140-222 19-121 (186)
164 PF12688 TPR_5: Tetratrico pep 98.3 7.7E-06 1.7E-10 59.1 8.4 67 182-248 2-71 (120)
165 PF13512 TPR_18: Tetratricopep 98.2 1.7E-05 3.7E-10 58.5 10.0 74 177-250 6-82 (142)
166 PRK10866 outer membrane biogen 98.2 1.1E-05 2.4E-10 65.9 9.8 71 180-250 31-104 (243)
167 PF14938 SNAP: Soluble NSF att 98.2 7.4E-06 1.6E-10 68.4 8.8 100 145-244 73-184 (282)
168 PF13525 YfiO: Outer membrane 98.2 1.2E-05 2.7E-10 63.8 9.6 73 177-249 1-76 (203)
169 COG4785 NlpI Lipoprotein NlpI, 98.2 2.9E-06 6.2E-11 66.5 5.6 75 175-249 59-133 (297)
170 PRK15331 chaperone protein Sic 98.2 9.8E-06 2.1E-10 61.1 8.1 70 180-249 36-105 (165)
171 PF13181 TPR_8: Tetratricopept 98.2 3.8E-06 8.3E-11 46.3 4.6 32 216-247 2-33 (34)
172 PF04733 Coatomer_E: Coatomer 98.2 1.5E-05 3.3E-10 66.7 10.2 87 161-248 182-269 (290)
173 PF12569 NARP1: NMDA receptor- 98.2 3.3E-05 7.1E-10 69.5 12.5 96 147-243 195-290 (517)
174 KOG4555 TPR repeat-containing 98.1 8.8E-06 1.9E-10 58.8 6.2 63 187-249 49-111 (175)
175 KOG2003 TPR repeat-containing 98.1 2.3E-05 5E-10 67.7 9.8 104 144-248 556-693 (840)
176 KOG3785 Uncharacterized conser 98.1 4.1E-05 8.9E-10 64.3 10.9 130 103-248 29-184 (557)
177 KOG4162 Predicted calmodulin-b 98.1 3E-05 6.5E-10 70.6 10.5 102 147-249 651-754 (799)
178 PF12569 NARP1: NMDA receptor- 98.1 1.7E-05 3.7E-10 71.3 8.6 66 183-248 196-261 (517)
179 PF13428 TPR_14: Tetratricopep 98.1 8.1E-06 1.8E-10 48.0 4.5 42 147-189 2-43 (44)
180 KOG0495 HAT repeat protein [RN 98.1 4.9E-05 1.1E-09 68.4 11.0 102 146-248 651-752 (913)
181 KOG4648 Uncharacterized conser 98.1 4.6E-06 1E-10 69.5 4.3 63 185-247 101-163 (536)
182 PF12968 DUF3856: Domain of Un 98.0 0.0005 1.1E-08 48.8 13.0 97 151-247 14-132 (144)
183 PF04733 Coatomer_E: Coatomer 98.0 7.9E-05 1.7E-09 62.4 10.8 101 146-249 131-235 (290)
184 KOG2376 Signal recognition par 98.0 6.7E-05 1.5E-09 66.6 9.9 99 143-246 43-141 (652)
185 PF13181 TPR_8: Tetratricopept 97.9 1.9E-05 4.1E-10 43.4 4.1 33 182-214 2-34 (34)
186 KOG0546 HSP90 co-chaperone CPR 97.9 7.8E-06 1.7E-10 68.3 3.5 105 145-249 221-343 (372)
187 KOG1130 Predicted G-alpha GTPa 97.9 6.5E-06 1.4E-10 70.2 2.8 98 148-245 197-305 (639)
188 COG3118 Thioredoxin domain-con 97.9 0.00032 6.9E-09 57.7 12.4 103 146-249 134-270 (304)
189 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0002 4.3E-09 62.3 11.9 88 158-249 181-268 (395)
190 KOG3785 Uncharacterized conser 97.9 4.8E-05 1E-09 63.9 7.4 86 156-241 32-117 (557)
191 COG0457 NrfG FOG: TPR repeat [ 97.9 0.00042 9.1E-09 53.8 12.2 93 155-247 139-234 (291)
192 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00034 7.3E-09 54.3 11.1 102 146-247 167-268 (291)
193 KOG1130 Predicted G-alpha GTPa 97.8 0.00012 2.5E-09 62.8 8.6 102 145-246 234-346 (639)
194 KOG4507 Uncharacterized conser 97.8 2.5E-05 5.5E-10 69.3 4.6 99 151-249 612-710 (886)
195 COG1729 Uncharacterized protei 97.7 0.00017 3.8E-09 58.6 8.1 66 184-249 144-212 (262)
196 KOG2376 Signal recognition par 97.7 0.00054 1.2E-08 61.1 11.3 102 148-249 112-258 (652)
197 COG4976 Predicted methyltransf 97.7 6.1E-05 1.3E-09 59.6 4.8 59 191-249 5-63 (287)
198 PF13176 TPR_7: Tetratricopept 97.7 9.8E-05 2.1E-09 41.2 4.4 31 217-247 1-31 (36)
199 KOG4151 Myosin assembly protei 97.7 0.00012 2.5E-09 67.2 6.9 106 143-248 50-160 (748)
200 KOG4340 Uncharacterized conser 97.7 0.0003 6.4E-09 58.0 8.5 85 156-241 20-104 (459)
201 KOG4340 Uncharacterized conser 97.7 0.0001 2.2E-09 60.7 5.7 95 144-239 142-265 (459)
202 COG3071 HemY Uncharacterized e 97.7 0.00053 1.2E-08 58.3 10.1 77 166-244 314-390 (400)
203 PLN00113 leucine-rich repeat r 97.6 3.1E-05 6.7E-10 75.5 3.1 76 1-76 867-954 (968)
204 PLN03081 pentatricopeptide (PP 97.6 0.00045 9.8E-09 65.1 10.6 94 148-244 464-557 (697)
205 PLN03077 Protein ECB2; Provisi 97.6 0.0009 2E-08 64.5 12.8 96 146-244 625-720 (857)
206 KOG0376 Serine-threonine phosp 97.6 4.6E-05 1E-09 66.2 3.4 85 142-227 34-118 (476)
207 KOG4642 Chaperone-dependent E3 97.6 6.4E-05 1.4E-09 59.8 3.7 62 187-248 16-77 (284)
208 KOG2796 Uncharacterized conser 97.6 0.00041 8.9E-09 56.2 8.0 105 143-247 209-318 (366)
209 PF13174 TPR_6: Tetratricopept 97.6 9.5E-05 2.1E-09 40.1 3.3 31 217-247 2-32 (33)
210 PF10300 DUF3808: Protein of u 97.6 0.00066 1.4E-08 60.8 10.0 104 143-247 264-379 (468)
211 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00049 1.1E-08 41.9 6.3 43 182-224 2-44 (53)
212 PRK10941 hypothetical protein; 97.5 0.00067 1.4E-08 56.0 9.0 78 147-225 182-259 (269)
213 COG2976 Uncharacterized protei 97.5 0.0019 4.2E-08 50.0 10.6 100 146-247 89-191 (207)
214 smart00028 TPR Tetratricopepti 97.5 0.00014 3E-09 38.4 3.3 32 216-247 2-33 (34)
215 PF05843 Suf: Suppressor of fo 97.5 0.0017 3.7E-08 54.2 11.1 97 150-247 5-102 (280)
216 PRK10941 hypothetical protein; 97.5 0.0021 4.5E-08 53.1 10.9 67 182-248 182-248 (269)
217 PF15015 NYD-SP12_N: Spermatog 97.4 0.00082 1.8E-08 57.8 8.6 95 148-242 178-289 (569)
218 PF04781 DUF627: Protein of un 97.4 0.00077 1.7E-08 47.4 7.1 93 152-244 2-107 (111)
219 KOG3824 Huntingtin interacting 97.4 0.00081 1.8E-08 55.7 7.8 82 142-224 112-193 (472)
220 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.0004 8.7E-09 42.3 4.4 34 216-249 2-35 (53)
221 PLN03218 maturation of RBCL 1; 97.4 0.004 8.8E-08 61.0 13.5 88 153-241 586-675 (1060)
222 PF03704 BTAD: Bacterial trans 97.3 0.0019 4E-08 48.3 8.7 63 146-209 62-124 (146)
223 KOG1941 Acetylcholine receptor 97.3 0.00081 1.8E-08 56.8 7.0 99 148-246 124-237 (518)
224 PLN03081 pentatricopeptide (PP 97.3 0.0022 4.8E-08 60.4 10.7 93 147-239 291-384 (697)
225 PRK04841 transcriptional regul 97.3 0.0045 9.8E-08 60.0 13.1 99 148-246 454-562 (903)
226 COG4105 ComL DNA uptake lipopr 97.3 0.0024 5.2E-08 51.7 9.2 71 180-250 33-106 (254)
227 smart00028 TPR Tetratricopepti 97.3 0.00045 9.8E-09 36.3 3.7 32 182-213 2-33 (34)
228 PLN03218 maturation of RBCL 1; 97.3 0.0061 1.3E-07 59.8 13.5 97 147-244 508-608 (1060)
229 PF13176 TPR_7: Tetratricopept 97.3 0.0006 1.3E-08 38.0 4.0 27 183-209 1-27 (36)
230 KOG2053 Mitochondrial inherita 97.3 0.0019 4.2E-08 60.1 9.3 101 146-248 43-143 (932)
231 PF13174 TPR_6: Tetratricopept 97.3 0.00058 1.3E-08 36.8 3.9 32 183-214 2-33 (33)
232 KOG3081 Vesicle coat complex C 97.2 0.0092 2E-07 48.6 12.0 97 145-242 168-268 (299)
233 KOG4814 Uncharacterized conser 97.2 0.0036 7.7E-08 56.6 10.3 97 148-244 356-457 (872)
234 PF14561 TPR_20: Tetratricopep 97.2 0.0019 4.2E-08 44.1 6.7 77 165-242 7-85 (90)
235 PRK04841 transcriptional regul 97.2 0.0039 8.5E-08 60.4 11.3 98 148-245 493-603 (903)
236 KOG2471 TPR repeat-containing 97.2 0.0011 2.4E-08 58.0 6.4 101 145-245 239-365 (696)
237 PF14561 TPR_20: Tetratricopep 97.1 0.0063 1.4E-07 41.6 8.9 51 200-250 7-57 (90)
238 KOG0545 Aryl-hydrocarbon recep 97.1 0.0039 8.4E-08 50.2 8.5 70 148-218 232-301 (329)
239 KOG1915 Cell cycle control pro 97.1 0.008 1.7E-07 52.7 10.6 102 146-248 73-174 (677)
240 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0017 3.7E-08 54.3 5.8 75 176-250 76-154 (390)
241 KOG3824 Huntingtin interacting 97.0 0.0021 4.5E-08 53.4 6.2 62 188-249 123-184 (472)
242 PLN03077 Protein ECB2; Provisi 97.0 0.0074 1.6E-07 58.3 11.0 95 146-241 554-651 (857)
243 COG4700 Uncharacterized protei 97.0 0.022 4.7E-07 44.2 11.0 96 145-241 123-219 (251)
244 KOG1308 Hsp70-interacting prot 96.9 0.00019 4.1E-09 60.0 -0.1 58 193-250 126-183 (377)
245 PF10602 RPN7: 26S proteasome 96.9 0.019 4E-07 44.6 10.9 97 146-242 36-140 (177)
246 COG3071 HemY Uncharacterized e 96.9 0.048 1E-06 46.7 13.7 95 146-240 118-212 (400)
247 KOG2610 Uncharacterized conser 96.9 0.0071 1.5E-07 50.9 8.5 97 143-239 134-233 (491)
248 KOG3081 Vesicle coat complex C 96.8 0.022 4.9E-07 46.4 10.7 100 146-248 137-240 (299)
249 KOG2053 Mitochondrial inherita 96.7 0.016 3.6E-07 54.2 10.6 91 157-248 20-110 (932)
250 KOG2796 Uncharacterized conser 96.7 0.013 2.9E-07 47.7 8.8 101 148-248 179-285 (366)
251 KOG2471 TPR repeat-containing 96.7 0.0029 6.2E-08 55.6 5.3 81 148-228 285-382 (696)
252 COG4976 Predicted methyltransf 96.7 0.0031 6.6E-08 50.2 4.9 60 155-215 4-63 (287)
253 KOG1585 Protein required for f 96.7 0.034 7.4E-07 44.9 10.8 96 151-246 36-141 (308)
254 PF09613 HrpB1_HrpK: Bacterial 96.6 0.057 1.2E-06 40.8 11.1 85 147-232 11-95 (160)
255 PF09986 DUF2225: Uncharacteri 96.6 0.023 5.1E-07 45.4 9.4 90 155-244 86-194 (214)
256 KOG1586 Protein required for f 96.6 0.027 5.8E-07 45.1 9.4 104 146-249 113-229 (288)
257 PF10300 DUF3808: Protein of u 96.6 0.015 3.4E-07 52.1 9.3 87 158-245 245-335 (468)
258 KOG2610 Uncharacterized conser 96.6 0.025 5.5E-07 47.7 9.7 99 149-248 106-208 (491)
259 KOG1586 Protein required for f 96.6 0.025 5.3E-07 45.3 9.0 100 145-244 72-183 (288)
260 KOG2396 HAT (Half-A-TPR) repea 96.6 0.02 4.3E-07 50.6 9.3 84 165-249 90-174 (568)
261 cd05038 PTKc_Jak_rpt2 Catalyti 96.5 0.0013 2.8E-08 54.3 1.7 31 43-73 253-283 (284)
262 KOG3364 Membrane protein invol 96.5 0.014 3.1E-07 42.5 6.7 66 160-225 49-115 (149)
263 KOG1915 Cell cycle control pro 96.5 0.045 9.9E-07 48.2 10.8 97 146-244 404-500 (677)
264 PF05843 Suf: Suppressor of fo 96.4 0.041 8.9E-07 45.9 10.4 100 148-248 37-140 (280)
265 PF13374 TPR_10: Tetratricopep 96.3 0.01 2.2E-07 33.7 4.5 29 182-210 3-31 (42)
266 PF13374 TPR_10: Tetratricopep 96.3 0.011 2.4E-07 33.5 4.4 31 215-245 2-32 (42)
267 PF04184 ST7: ST7 protein; In 96.3 0.02 4.4E-07 50.5 7.8 57 185-241 263-321 (539)
268 COG3914 Spy Predicted O-linked 96.1 0.077 1.7E-06 47.8 10.6 96 152-248 73-175 (620)
269 PF10516 SHNi-TPR: SHNi-TPR; 96.1 0.011 2.5E-07 33.2 3.6 32 216-247 2-33 (38)
270 PF07720 TPR_3: Tetratricopept 96.1 0.022 4.8E-07 31.6 4.6 33 216-248 2-36 (36)
271 COG2912 Uncharacterized conser 96.0 0.071 1.5E-06 43.8 9.3 73 151-224 186-258 (269)
272 KOG1941 Acetylcholine receptor 96.0 0.037 8E-07 47.2 7.8 99 147-245 163-276 (518)
273 PF02259 FAT: FAT domain; Int 96.0 0.075 1.6E-06 45.4 10.2 102 146-247 184-341 (352)
274 COG2912 Uncharacterized conser 96.0 0.029 6.2E-07 46.0 6.8 67 182-248 182-248 (269)
275 PF12862 Apc5: Anaphase-promot 96.0 0.058 1.3E-06 37.1 7.5 57 156-212 8-72 (94)
276 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.089 1.9E-06 34.6 7.7 64 146-210 6-72 (80)
277 cd05080 PTKc_Tyk2_rpt2 Catalyt 95.9 0.0015 3.3E-08 54.1 -0.6 31 43-73 251-281 (283)
278 PRK13184 pknD serine/threonine 95.9 0.082 1.8E-06 51.1 10.4 97 151-248 480-585 (932)
279 PF04184 ST7: ST7 protein; In 95.8 0.17 3.6E-06 45.0 11.2 98 150-247 263-378 (539)
280 PF13281 DUF4071: Domain of un 95.8 0.18 3.9E-06 43.7 11.3 32 216-247 306-337 (374)
281 cd05094 PTKc_TrkC Catalytic do 95.7 0.0055 1.2E-07 51.0 1.8 33 44-76 253-285 (291)
282 PF10516 SHNi-TPR: SHNi-TPR; 95.7 0.02 4.4E-07 32.2 3.5 30 182-211 2-31 (38)
283 COG3898 Uncharacterized membra 95.7 0.26 5.6E-06 42.6 11.5 97 144-243 118-216 (531)
284 KOG1070 rRNA processing protei 95.7 0.29 6.2E-06 48.6 13.0 101 145-245 1563-1664(1710)
285 PF12862 Apc5: Anaphase-promot 95.6 0.073 1.6E-06 36.6 6.8 60 189-248 6-74 (94)
286 KOG0530 Protein farnesyltransf 95.6 0.13 2.8E-06 42.0 8.9 86 161-247 93-179 (318)
287 KOG3364 Membrane protein invol 95.5 0.14 3.1E-06 37.5 8.1 70 180-249 31-105 (149)
288 PF02259 FAT: FAT domain; Int 95.4 0.42 9.1E-06 40.8 12.5 107 143-249 143-292 (352)
289 COG3629 DnrI DNA-binding trans 95.4 0.32 6.9E-06 40.4 10.9 63 146-209 153-215 (280)
290 cd05045 PTKc_RET Catalytic dom 95.3 0.0023 5E-08 53.2 -1.8 31 44-74 257-287 (290)
291 PHA02988 hypothetical protein; 95.3 0.0076 1.6E-07 50.2 1.2 30 45-74 251-280 (283)
292 TIGR02561 HrpB1_HrpK type III 95.3 0.41 8.8E-06 35.8 10.1 82 150-232 14-95 (153)
293 KOG1585 Protein required for f 95.2 0.44 9.6E-06 38.7 10.8 99 146-244 110-219 (308)
294 KOG4507 Uncharacterized conser 95.1 0.04 8.7E-07 49.7 5.3 100 149-248 215-316 (886)
295 cd08228 STKc_Nek6 Catalytic do 95.1 0.0091 2E-07 48.8 1.1 30 44-73 236-265 (267)
296 PF07721 TPR_4: Tetratricopept 95.0 0.043 9.2E-07 27.9 3.1 24 216-239 2-25 (26)
297 cd08229 STKc_Nek7 Catalytic do 94.9 0.017 3.6E-07 47.2 2.1 30 44-73 236-265 (267)
298 COG3629 DnrI DNA-binding trans 94.8 0.67 1.5E-05 38.5 11.3 80 162-244 137-216 (280)
299 PF13281 DUF4071: Domain of un 94.8 0.45 9.8E-06 41.2 10.5 102 147-249 142-260 (374)
300 smart00750 KIND kinase non-cat 94.7 0.015 3.3E-07 44.4 1.5 30 44-73 140-169 (176)
301 KOG1070 rRNA processing protei 94.7 0.46 9.9E-06 47.3 11.2 99 149-248 1533-1633(1710)
302 COG0790 FOG: TPR repeat, SEL1 94.7 0.92 2E-05 37.8 12.2 99 145-246 108-222 (292)
303 cd05116 PTKc_Syk Catalytic dom 94.7 0.0033 7.2E-08 51.2 -2.6 28 45-72 227-254 (257)
304 PF10373 EST1_DNA_bind: Est1 D 94.6 0.15 3.2E-06 42.2 7.2 62 165-227 1-62 (278)
305 cd08528 STKc_Nek10 Catalytic d 94.6 0.016 3.4E-07 47.5 1.4 27 45-71 242-268 (269)
306 KOG0686 COP9 signalosome, subu 94.5 0.31 6.8E-06 42.2 8.7 96 146-241 150-255 (466)
307 PF07720 TPR_3: Tetratricopept 94.5 0.17 3.6E-06 28.1 4.8 32 182-213 2-35 (36)
308 PF08631 SPO22: Meiosis protei 94.5 1.2 2.5E-05 37.2 12.2 99 146-244 35-150 (278)
309 PF08424 NRDE-2: NRDE-2, neces 94.3 0.55 1.2E-05 40.1 10.0 107 140-247 13-134 (321)
310 COG5191 Uncharacterized conser 94.2 0.064 1.4E-06 44.8 4.0 77 143-220 104-181 (435)
311 PF10255 Paf67: RNA polymerase 94.1 0.086 1.9E-06 46.0 4.9 54 155-209 131-192 (404)
312 COG3947 Response regulator con 94.0 0.27 5.9E-06 40.8 7.1 60 183-242 281-340 (361)
313 KOG1550 Extracellular protein 93.9 0.81 1.8E-05 42.1 10.9 92 149-245 291-394 (552)
314 KOG3617 WD40 and TPR repeat-co 93.8 0.7 1.5E-05 43.8 10.1 96 148-243 860-995 (1416)
315 PF07079 DUF1347: Protein of u 93.6 0.55 1.2E-05 41.4 8.7 57 148-206 464-520 (549)
316 PF08424 NRDE-2: NRDE-2, neces 93.6 1.5 3.2E-05 37.4 11.5 65 146-211 65-132 (321)
317 KOG0530 Protein farnesyltransf 93.4 0.8 1.7E-05 37.6 8.7 92 156-248 53-146 (318)
318 PF12968 DUF3856: Domain of Un 93.4 1.4 3.1E-05 31.6 8.9 64 146-210 55-129 (144)
319 COG2976 Uncharacterized protei 93.2 3.2 7E-05 32.5 11.4 97 144-241 51-152 (207)
320 PF04910 Tcf25: Transcriptiona 93.1 1.9 4E-05 37.5 11.4 100 148-247 105-225 (360)
321 cd06642 STKc_STK25-YSK1 Cataly 93.1 0.021 4.5E-07 47.1 -0.6 26 44-69 228-253 (277)
322 KOG1550 Extracellular protein 93.1 1.3 2.9E-05 40.7 11.0 98 144-243 242-356 (552)
323 cd05086 PTKc_Aatyk2 Catalytic 93.0 0.065 1.4E-06 43.9 2.2 40 26-70 227-266 (268)
324 PF11207 DUF2989: Protein of u 92.9 1.5 3.2E-05 34.6 9.4 71 163-235 123-198 (203)
325 KOG0529 Protein geranylgeranyl 92.9 0.92 2E-05 39.4 8.9 89 159-248 88-182 (421)
326 PF09986 DUF2225: Uncharacteri 92.9 0.88 1.9E-05 36.4 8.4 78 146-223 125-208 (214)
327 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 92.7 0.1 2.2E-06 43.0 3.0 30 44-73 254-283 (284)
328 cd05063 PTKc_EphR_A2 Catalytic 92.6 0.12 2.6E-06 42.2 3.3 30 44-73 238-267 (268)
329 PF10579 Rapsyn_N: Rapsyn N-te 92.6 1.5 3.2E-05 29.0 7.6 64 184-247 9-75 (80)
330 PF07079 DUF1347: Protein of u 92.6 0.46 9.9E-06 41.9 6.7 52 188-240 469-520 (549)
331 PF09670 Cas_Cas02710: CRISPR- 92.5 3.2 6.9E-05 36.3 12.1 100 146-245 131-271 (379)
332 COG4455 ImpE Protein of avirul 92.3 0.54 1.2E-05 37.5 6.2 65 151-216 6-70 (273)
333 KOG0529 Protein geranylgeranyl 92.2 4.5 9.8E-05 35.3 12.2 94 155-249 37-145 (421)
334 cd05148 PTKc_Srm_Brk Catalytic 92.2 0.13 2.9E-06 41.7 3.0 29 44-72 232-260 (261)
335 KOG2396 HAT (Half-A-TPR) repea 92.2 1 2.2E-05 40.2 8.4 69 151-220 110-179 (568)
336 cd05053 PTKc_FGFR Catalytic do 92.2 0.15 3.2E-06 42.3 3.3 31 43-73 261-291 (293)
337 cd05052 PTKc_Abl Catalytic dom 92.2 0.15 3.3E-06 41.5 3.3 30 44-73 233-262 (263)
338 KOG2300 Uncharacterized conser 92.1 2.3 4.9E-05 38.0 10.3 98 144-245 365-475 (629)
339 cd05033 PTKc_EphR Catalytic do 92.1 0.15 3.3E-06 41.6 3.2 30 44-73 236-265 (266)
340 cd08218 STKc_Nek1 Catalytic do 92.0 0.028 6E-07 45.6 -1.3 26 44-69 228-253 (256)
341 cd05068 PTKc_Frk_like Catalyti 91.9 0.14 2.9E-06 41.7 2.8 30 43-72 231-260 (261)
342 PF07714 Pkinase_Tyr: Protein 91.9 0.12 2.6E-06 42.2 2.4 26 45-70 234-259 (259)
343 PF07721 TPR_4: Tetratricopept 91.8 0.27 5.9E-06 24.8 2.8 23 183-205 3-25 (26)
344 cd05097 PTKc_DDR_like Catalyti 91.7 0.14 3.1E-06 42.5 2.8 28 44-71 267-294 (295)
345 cd06621 PKc_MAPKK_Pek1_like Ca 91.7 0.14 2.9E-06 42.5 2.6 26 44-69 241-266 (287)
346 cd06624 STKc_ASK Catalytic dom 91.7 0.092 2E-06 42.9 1.5 25 44-68 240-264 (268)
347 PF14863 Alkyl_sulf_dimr: Alky 91.7 0.51 1.1E-05 35.1 5.3 50 146-196 70-119 (141)
348 cd05102 PTKc_VEGFR3 Catalytic 91.6 0.16 3.6E-06 43.1 3.1 31 44-74 305-335 (338)
349 COG3898 Uncharacterized membra 91.5 3.2 6.9E-05 36.2 10.4 95 150-248 267-362 (531)
350 cd06629 STKc_MAPKKK_Bck1_like 91.5 0.11 2.3E-06 42.6 1.7 26 44-69 244-269 (272)
351 KOG2047 mRNA splicing factor [ 91.5 2.7 5.8E-05 38.9 10.4 101 146-246 425-542 (835)
352 COG4455 ImpE Protein of avirul 91.5 1 2.2E-05 36.0 6.9 57 192-248 12-68 (273)
353 cd06612 STKc_MST1_2 Catalytic 91.5 0.08 1.7E-06 42.8 0.9 25 44-68 228-252 (256)
354 cd05114 PTKc_Tec_Rlk Catalytic 91.4 0.17 3.6E-06 41.0 2.8 27 44-70 229-255 (256)
355 cd08217 STKc_Nek2 Catalytic do 91.4 0.027 5.8E-07 45.7 -2.0 26 44-69 237-262 (265)
356 COG5191 Uncharacterized conser 91.4 0.33 7.2E-06 40.7 4.4 81 168-249 95-176 (435)
357 cd05048 PTKc_Ror Catalytic Dom 91.3 0.17 3.6E-06 41.7 2.7 29 44-72 254-282 (283)
358 cd02682 MIT_AAA_Arch MIT: doma 91.3 0.45 9.7E-06 31.2 4.1 31 145-175 5-35 (75)
359 cd05051 PTKc_DDR Catalytic dom 91.3 0.16 3.5E-06 42.1 2.6 29 43-71 267-295 (296)
360 PF11207 DUF2989: Protein of u 91.3 0.81 1.7E-05 36.0 6.2 55 146-201 141-198 (203)
361 cd05035 PTKc_Axl_like Catalyti 91.1 0.2 4.4E-06 40.8 3.0 31 43-73 242-272 (273)
362 cd06640 STKc_MST4 Catalytic do 91.1 0.059 1.3E-06 44.4 -0.2 27 43-69 227-253 (277)
363 PF04910 Tcf25: Transcriptiona 91.1 3.2 6.9E-05 36.1 10.4 99 145-243 39-167 (360)
364 cd05050 PTKc_Musk Catalytic do 91.0 0.21 4.5E-06 41.3 3.0 28 44-71 260-287 (288)
365 PF09613 HrpB1_HrpK: Bacterial 91.0 2.6 5.7E-05 31.9 8.5 66 182-247 11-76 (160)
366 cd05093 PTKc_TrkB Catalytic do 90.9 0.23 5E-06 41.1 3.2 33 44-76 250-282 (288)
367 cd05112 PTKc_Itk Catalytic dom 90.9 0.2 4.3E-06 40.5 2.7 27 44-70 229-255 (256)
368 cd05072 PTKc_Lyn Catalytic dom 90.9 0.22 4.8E-06 40.4 3.0 29 44-72 232-260 (261)
369 cd05087 PTKc_Aatyk1_Aatyk3 Cat 90.8 0.15 3.3E-06 41.6 2.1 24 47-71 245-268 (269)
370 COG4941 Predicted RNA polymera 90.7 1.1 2.4E-05 38.0 6.8 85 161-247 311-397 (415)
371 KOG0546 HSP90 co-chaperone CPR 90.7 0.2 4.4E-06 42.5 2.6 82 149-231 278-359 (372)
372 KOG0192 Tyrosine kinase specif 90.6 0.18 3.9E-06 43.7 2.4 33 45-77 275-307 (362)
373 cd05060 PTKc_Syk_like Catalyti 90.5 0.23 5E-06 40.2 2.9 30 44-73 226-255 (257)
374 cd06637 STKc_TNIK Catalytic do 90.5 0.099 2.1E-06 42.7 0.6 24 45-68 245-268 (272)
375 cd05043 PTK_Ryk Pseudokinase d 90.5 0.25 5.5E-06 40.6 3.1 31 44-74 247-277 (280)
376 cd05054 PTKc_VEGFR Catalytic d 90.5 0.25 5.5E-06 42.2 3.1 32 43-74 303-334 (337)
377 cd05074 PTKc_Tyro3 Catalytic d 90.4 0.25 5.5E-06 40.3 3.0 31 43-73 242-272 (273)
378 cd08219 STKc_Nek3 Catalytic do 90.4 0.26 5.6E-06 39.9 3.0 25 45-69 228-252 (255)
379 cd05047 PTKc_Tie Catalytic dom 90.3 0.26 5.6E-06 40.3 3.0 30 44-73 239-268 (270)
380 PF10602 RPN7: 26S proteasome 90.3 2.2 4.8E-05 33.0 7.9 66 180-245 35-103 (177)
381 cd05058 PTKc_Met_Ron Catalytic 90.3 0.27 5.9E-06 39.9 3.1 31 44-74 230-260 (262)
382 KOG4814 Uncharacterized conser 90.2 0.89 1.9E-05 41.8 6.3 67 182-248 355-427 (872)
383 cd05075 PTKc_Axl Catalytic dom 90.2 0.3 6.5E-06 39.9 3.2 30 44-73 242-271 (272)
384 cd05101 PTKc_FGFR2 Catalytic d 90.1 0.29 6.3E-06 40.8 3.2 33 44-76 267-299 (304)
385 cd05095 PTKc_DDR2 Catalytic do 90.1 0.29 6.2E-06 40.7 3.1 29 43-71 267-295 (296)
386 PF04212 MIT: MIT (microtubule 90.1 0.9 1.9E-05 29.1 4.8 31 145-175 4-34 (69)
387 cd02680 MIT_calpain7_2 MIT: do 90.0 0.57 1.2E-05 30.7 3.7 32 145-176 5-36 (75)
388 cd05066 PTKc_EphR_A Catalytic 90.0 0.31 6.7E-06 39.8 3.2 30 44-73 237-266 (267)
389 cd05079 PTKc_Jak1_rpt2 Catalyt 89.9 0.32 6.9E-06 40.1 3.2 30 44-73 254-283 (284)
390 COG3118 Thioredoxin domain-con 89.9 1.3 2.8E-05 37.0 6.5 54 187-240 140-193 (304)
391 COG0790 FOG: TPR repeat, SEL1 89.7 5.2 0.00011 33.3 10.4 81 161-247 170-269 (292)
392 cd06613 STKc_MAP4K3_like Catal 89.7 0.16 3.4E-06 41.2 1.2 25 44-68 235-259 (262)
393 cd06616 PKc_MKK4 Catalytic dom 89.7 0.096 2.1E-06 43.3 -0.1 26 44-69 242-267 (288)
394 cd05111 PTK_HER3 Pseudokinase 89.5 0.41 8.9E-06 39.4 3.6 32 45-76 240-271 (279)
395 cd05091 PTKc_Ror2 Catalytic do 89.5 0.32 6.9E-06 40.0 2.9 28 44-71 254-281 (283)
396 cd05096 PTKc_DDR1 Catalytic do 89.4 0.31 6.8E-06 40.7 2.8 28 44-71 276-303 (304)
397 cd05059 PTKc_Tec_like Catalyti 89.4 0.29 6.2E-06 39.7 2.5 27 44-70 229-255 (256)
398 cd05098 PTKc_FGFR1 Catalytic d 89.4 0.38 8.3E-06 40.2 3.3 33 44-76 270-302 (307)
399 cd06631 STKc_YSK4 Catalytic do 89.4 0.19 4E-06 41.0 1.4 24 45-68 238-261 (265)
400 cd08224 STKc_Nek6_Nek7 Catalyt 89.3 0.41 8.9E-06 38.8 3.4 30 44-73 236-265 (267)
401 cd05104 PTKc_Kit Catalytic dom 89.3 0.29 6.2E-06 42.5 2.6 29 44-72 345-373 (375)
402 PF14863 Alkyl_sulf_dimr: Alky 89.3 1.4 3E-05 32.7 5.8 54 180-233 69-122 (141)
403 cd06606 STKc_MAPKKK Catalytic 89.2 0.086 1.9E-06 42.4 -0.7 25 44-68 232-256 (260)
404 cd02683 MIT_1 MIT: domain cont 89.2 0.82 1.8E-05 30.1 4.1 31 145-175 5-35 (77)
405 cd05064 PTKc_EphR_A10 Catalyti 89.2 0.39 8.5E-06 39.2 3.2 30 44-73 236-265 (266)
406 cd05039 PTKc_Csk_like Catalyti 89.1 0.33 7.2E-06 39.2 2.7 29 44-72 227-255 (256)
407 cd05084 PTKc_Fes Catalytic dom 89.1 0.34 7.4E-06 39.1 2.7 29 43-71 223-251 (252)
408 cd05065 PTKc_EphR_B Catalytic 89.0 0.37 8E-06 39.3 3.0 30 44-73 239-268 (269)
409 cd02681 MIT_calpain7_1 MIT: do 89.0 0.9 2E-05 29.9 4.1 31 145-175 5-35 (76)
410 cd05099 PTKc_FGFR4 Catalytic d 89.0 0.47 1E-05 39.9 3.6 33 44-76 264-296 (314)
411 cd05082 PTKc_Csk Catalytic dom 88.8 0.36 7.8E-06 39.0 2.7 29 44-72 227-255 (256)
412 cd05103 PTKc_VEGFR2 Catalytic 88.8 0.36 7.9E-06 41.2 2.8 32 44-75 310-341 (343)
413 cd05062 PTKc_IGF-1R Catalytic 88.7 0.34 7.3E-06 39.8 2.5 28 44-71 249-276 (277)
414 PHA02537 M terminase endonucle 88.6 0.52 1.1E-05 38.0 3.4 93 156-248 93-211 (230)
415 cd05085 PTKc_Fer Catalytic dom 88.6 0.42 9.1E-06 38.4 3.0 29 43-71 221-249 (250)
416 cd05078 PTK_Jak2_Jak3_rpt1 Pse 88.6 0.32 7E-06 39.5 2.3 27 44-70 231-257 (258)
417 cd02682 MIT_AAA_Arch MIT: doma 88.5 0.89 1.9E-05 29.8 3.8 56 163-227 4-59 (75)
418 TIGR03504 FimV_Cterm FimV C-te 88.4 1 2.2E-05 26.2 3.6 25 219-243 3-27 (44)
419 cd05609 STKc_MAST Catalytic do 88.3 0.15 3.2E-06 42.7 0.1 28 45-72 246-273 (305)
420 cd05106 PTKc_CSF-1R Catalytic 88.0 0.44 9.6E-06 41.4 2.9 30 44-73 343-372 (374)
421 cd05076 PTK_Tyk2_rpt1 Pseudoki 87.8 0.41 8.8E-06 39.4 2.5 27 44-70 247-273 (274)
422 cd05036 PTKc_ALK_LTK Catalytic 87.8 0.51 1.1E-05 38.8 3.0 28 44-71 249-276 (277)
423 KOG0198 MEKK and related serin 87.5 1 2.2E-05 38.2 4.7 64 1-70 211-277 (313)
424 cd05055 PTKc_PDGFR Catalytic d 87.5 0.58 1.3E-05 39.1 3.2 29 44-72 272-300 (302)
425 cd02678 MIT_VPS4 MIT: domain c 87.4 1.4 2.9E-05 28.8 4.3 31 145-175 5-35 (75)
426 KOG3617 WD40 and TPR repeat-co 87.4 12 0.00025 36.1 11.5 61 182-242 859-939 (1416)
427 PRK13184 pknD serine/threonine 87.4 6.5 0.00014 38.5 10.4 86 160-249 533-625 (932)
428 COG3914 Spy Predicted O-linked 87.4 6.3 0.00014 36.1 9.5 85 164-249 49-136 (620)
429 PRK15180 Vi polysaccharide bio 87.3 8.5 0.00019 34.6 10.1 51 156-207 299-349 (831)
430 cd06605 PKc_MAPKK Catalytic do 87.2 0.14 3.1E-06 41.5 -0.6 25 45-69 233-257 (265)
431 cd05070 PTKc_Fyn_Yrk Catalytic 87.1 0.59 1.3E-05 37.9 3.0 29 44-72 231-259 (260)
432 cd05113 PTKc_Btk_Bmx Catalytic 87.1 0.48 1E-05 38.5 2.4 27 44-70 229-255 (256)
433 cd02680 MIT_calpain7_2 MIT: do 87.1 1.2 2.6E-05 29.2 3.8 34 161-210 2-35 (75)
434 cd05108 PTKc_EGFR Catalytic do 87.0 0.57 1.2E-05 39.4 2.9 33 44-76 239-271 (316)
435 PF04781 DUF627: Protein of un 87.0 3.5 7.5E-05 29.2 6.3 62 187-248 2-77 (111)
436 cd05089 PTKc_Tie1 Catalytic do 87.0 0.6 1.3E-05 38.8 3.0 33 44-76 246-278 (297)
437 cd06628 STKc_MAPKKK_Byr2_like 87.0 0.28 6E-06 39.9 0.9 24 45-68 240-263 (267)
438 cd05044 PTKc_c-ros Catalytic d 86.9 0.66 1.4E-05 37.7 3.2 28 44-71 241-268 (269)
439 cd05049 PTKc_Trk Catalytic dom 86.9 0.61 1.3E-05 38.2 3.0 28 44-71 252-279 (280)
440 cd05042 PTKc_Aatyk Catalytic d 86.8 0.49 1.1E-05 38.6 2.4 23 48-71 246-268 (269)
441 smart00386 HAT HAT (Half-A-TPR 86.7 1.8 4E-05 22.3 4.0 25 161-186 2-26 (33)
442 cd05061 PTKc_InsR Catalytic do 86.7 0.59 1.3E-05 38.6 2.9 31 43-73 248-278 (288)
443 PRK15180 Vi polysaccharide bio 86.7 3.2 7E-05 37.1 7.3 98 151-249 328-425 (831)
444 cd05067 PTKc_Lck_Blk Catalytic 86.7 0.6 1.3E-05 37.8 2.8 29 44-72 231-259 (260)
445 cd05105 PTKc_PDGFR_alpha Catal 86.7 0.55 1.2E-05 41.3 2.7 31 44-74 368-398 (400)
446 cd06651 STKc_MEKK3 Catalytic d 86.6 0.26 5.7E-06 40.2 0.7 22 47-68 239-260 (266)
447 COG4649 Uncharacterized protei 86.6 13 0.00029 28.8 10.3 98 146-243 94-195 (221)
448 cd05069 PTKc_Yes Catalytic dom 86.5 0.72 1.6E-05 37.4 3.2 29 44-72 231-259 (260)
449 cd05041 PTKc_Fes_like Catalyti 86.4 0.57 1.2E-05 37.7 2.5 28 44-71 223-250 (251)
450 cd05073 PTKc_Hck Catalytic dom 86.3 0.71 1.5E-05 37.4 3.1 29 44-72 231-259 (260)
451 cd05088 PTKc_Tie2 Catalytic do 86.3 0.66 1.4E-05 38.8 3.0 33 44-76 251-283 (303)
452 cd05071 PTKc_Src Catalytic dom 86.3 0.84 1.8E-05 37.1 3.5 30 43-72 230-259 (262)
453 cd05040 PTKc_Ack_like Catalyti 86.2 0.7 1.5E-05 37.3 3.0 28 44-71 229-256 (257)
454 cd05032 PTKc_InsR_like Catalyt 86.2 0.61 1.3E-05 38.1 2.6 28 44-71 249-276 (277)
455 cd05107 PTKc_PDGFR_beta Cataly 86.2 0.62 1.3E-05 41.0 2.8 30 44-73 370-399 (401)
456 PF11846 DUF3366: Domain of un 86.1 3.1 6.6E-05 32.5 6.4 49 162-212 127-175 (193)
457 cd05056 PTKc_FAK Catalytic dom 86.1 0.78 1.7E-05 37.4 3.2 32 44-75 236-267 (270)
458 cd05100 PTKc_FGFR3 Catalytic d 86.0 0.76 1.6E-05 39.0 3.2 33 44-76 264-296 (334)
459 cd06654 STKc_PAK1 Catalytic do 86.0 0.32 7E-06 40.5 0.9 25 45-69 246-270 (296)
460 cd05110 PTKc_HER4 Catalytic do 86.0 0.77 1.7E-05 38.3 3.2 33 44-76 239-271 (303)
461 smart00386 HAT HAT (Half-A-TPR 85.7 2.6 5.7E-05 21.6 4.2 29 195-223 1-29 (33)
462 COG3947 Response regulator con 85.6 3.3 7.2E-05 34.6 6.4 58 148-206 281-338 (361)
463 cd05083 PTKc_Chk Catalytic dom 85.4 0.69 1.5E-05 37.3 2.5 28 44-71 225-252 (254)
464 PHA02882 putative serine/threo 85.3 0.35 7.6E-06 40.3 0.8 26 45-70 268-293 (294)
465 KOG1839 Uncharacterized protei 85.3 2.1 4.6E-05 42.4 6.0 100 144-244 930-1044(1236)
466 cd02684 MIT_2 MIT: domain cont 85.2 2.1 4.5E-05 28.0 4.3 31 145-175 5-35 (75)
467 PF11817 Foie-gras_1: Foie gra 85.1 3.6 7.9E-05 33.6 6.6 60 148-207 180-244 (247)
468 cd05077 PTK_Jak1_rpt1 Pseudoki 85.1 0.65 1.4E-05 37.9 2.3 27 44-70 235-261 (262)
469 KOG0890 Protein kinase of the 85.0 17 0.00036 38.9 12.1 105 144-251 1668-1791(2382)
470 KOG2300 Uncharacterized conser 84.8 12 0.00027 33.6 9.9 95 144-238 44-150 (629)
471 KOG2581 26S proteasome regulat 84.8 7.6 0.00016 34.0 8.4 103 146-248 169-280 (493)
472 cd05109 PTKc_HER2 Catalytic do 84.7 0.95 2.1E-05 37.1 3.1 33 44-76 239-271 (279)
473 cd05090 PTKc_Ror1 Catalytic do 84.7 0.92 2E-05 37.3 3.0 29 44-72 254-282 (283)
474 PF11817 Foie-gras_1: Foie gra 84.4 14 0.0003 30.2 9.8 61 181-241 178-244 (247)
475 PF10345 Cohesin_load: Cohesin 84.4 9.2 0.0002 35.7 9.7 95 146-240 301-429 (608)
476 cd00192 PTKc Catalytic domain 84.3 0.91 2E-05 36.4 2.8 27 44-70 235-261 (262)
477 cd05034 PTKc_Src_like Catalyti 84.2 0.99 2.1E-05 36.5 3.0 29 44-72 232-260 (261)
478 cd05115 PTKc_Zap-70 Catalytic 84.2 0.95 2.1E-05 36.7 2.9 30 44-73 226-255 (257)
479 smart00745 MIT Microtubule Int 84.2 2.7 5.9E-05 27.4 4.6 31 145-175 7-37 (77)
480 TIGR03504 FimV_Cterm FimV C-te 84.2 2.3 4.9E-05 24.7 3.6 25 185-209 3-27 (44)
481 cd05092 PTKc_TrkA Catalytic do 84.1 0.84 1.8E-05 37.5 2.6 27 45-71 253-279 (280)
482 cd02679 MIT_spastin MIT: domai 84.1 2.3 4.9E-05 28.2 4.0 17 160-176 3-19 (79)
483 cd05037 PTK_Jak_rpt1 Pseudokin 84.0 0.82 1.8E-05 36.8 2.4 28 43-70 231-258 (259)
484 PF10952 DUF2753: Protein of u 83.6 5.5 0.00012 28.8 6.0 69 148-216 3-89 (140)
485 cd02656 MIT MIT: domain contai 83.6 2.7 5.8E-05 27.3 4.3 30 146-175 6-35 (75)
486 KOG1914 mRNA cleavage and poly 83.2 9.6 0.00021 34.7 8.6 92 140-234 14-106 (656)
487 cd02677 MIT_SNX15 MIT: domain 83.1 2.7 5.8E-05 27.5 4.1 31 145-175 5-35 (75)
488 PF13041 PPR_2: PPR repeat fam 83.0 7.2 0.00016 22.8 5.8 23 153-175 10-32 (50)
489 TIGR02561 HrpB1_HrpK type III 82.5 11 0.00023 28.4 7.4 63 184-246 13-75 (153)
490 cd02677 MIT_SNX15 MIT: domain 81.9 2.2 4.7E-05 28.0 3.3 32 163-210 4-35 (75)
491 PF10345 Cohesin_load: Cohesin 81.8 34 0.00075 32.0 12.4 101 144-245 57-169 (608)
492 cd06658 STKc_PAK5 Catalytic do 81.8 0.54 1.2E-05 39.1 0.5 25 45-69 248-272 (292)
493 smart00219 TyrKc Tyrosine kina 81.6 1 2.3E-05 36.1 2.1 27 44-70 232-258 (258)
494 KOG2047 mRNA splicing factor [ 81.6 15 0.00033 34.2 9.4 97 146-242 511-613 (835)
495 cd06622 PKc_MAPKK_PBS2_like Ca 81.5 0.65 1.4E-05 38.2 0.9 25 45-69 238-262 (286)
496 cd06659 STKc_PAK6 Catalytic do 81.5 0.87 1.9E-05 38.0 1.7 25 45-69 247-271 (297)
497 PTZ00283 serine/threonine prot 81.4 0.65 1.4E-05 42.1 0.9 25 45-69 273-297 (496)
498 KOG1310 WD40 repeat protein [G 80.9 4.7 0.0001 36.6 5.9 69 145-214 407-478 (758)
499 KOG3616 Selective LIM binding 80.8 11 0.00024 35.8 8.4 96 146-241 661-791 (1636)
500 cd08529 STKc_FA2-like Catalyti 80.7 1.3 2.9E-05 35.5 2.4 26 44-69 228-253 (256)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2e-24 Score=173.82 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
....|+.+|.+|+.+++.++|.+|+..|++||+++|. ++.+|+|||.+|.++|+|+.|+++|+.||.+||++.++|-++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.+|+.+|+|++|+..|++||+|+|+|.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999999875
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.5e-19 Score=150.91 Aligned_cols=107 Identities=22% Similarity=0.366 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
++..++..+.+|+.+|+.|+|..|+..|++||..+|+ ++.+|.|||.||.++|.+..|+.||+++++++|++.++|+|.
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3455888899999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.++..+.+|+.|++.|.+++++||++.
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999999999999999999864
No 3
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=149.91 Aligned_cols=103 Identities=27% Similarity=0.445 Sum_probs=100.0
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
+..++.+||.+|..|+|+.|+.+|+.||.++|. |...|.||+.+|..+|+|.+|+.+..++++++|+|+++|.++|.++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 456789999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 226 FSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+|+|++|+..|.++|+.+|+|.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~ 104 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNK 104 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchH
Confidence 999999999999999999999874
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4e-18 Score=130.04 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA 217 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 217 (251)
....+..++..||.+|+.|+|++|...|+.||++.|.. .+.+|.|||.|+++++.++.||.+|.+||+++|.+.++
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 45678999999999999999999999999999999852 35689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 218 LYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.+++.+|.++.+|++|+.+|++.++++|...
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999999999754
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.76 E-value=1.2e-17 Score=125.59 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=97.5
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
.+...|..++..|+|++|+.+|.+++..+|. +..+|+++|.++..+|++++|+..|.+|+.++|+++.+++++|.++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3667899999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhhcc
Q 025537 228 LGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 228 ~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+|++++|+..|+++++++|++.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999863
No 6
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.74 E-value=3.7e-18 Score=139.92 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=100.4
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
.+..++++||.||++|+|++||.||+++|..+|. |+..+.|||.+|++++.|..|..||..|+.++-.+.++|-++|.+
T Consensus 96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3566899999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
...+|...+|.++++.+|+|.|++.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccH
Confidence 9999999999999999999999864
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.2e-17 Score=140.56 Aligned_cols=96 Identities=26% Similarity=0.340 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
...|..++.+||.+|+.|+|++||.+|++||+++|+ .+.+|.||+.||..+|+|++.+++|.+|++++|+++++++|++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA 190 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 456899999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHH
Q 025537 223 ACLFSLGMENDARETLK 239 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~ 239 (251)
.++..+|++++|+.+..
T Consensus 191 ~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHhhccHHHHHHhhh
Confidence 99999999999998876
No 8
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.73 E-value=5.9e-17 Score=139.22 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=98.4
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
..++.+|+.+|..|+|++|+.+|++||+++|+ ++.+|+++|.+|+.+|++++|+.++++|+.++|+++.+|+++|.+|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 35778899999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhhhhhcc
Q 025537 227 SLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 227 ~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|+|++|+.+|+++++++|++.
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999864
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-16 Score=133.42 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
....|...++.||.+|+.|+|..|+..|.+|++.-+.. --.++.|++.||+++++|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 45668899999999999999999999999998763310 1247999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|+++|+|++++|++|.++..+|+|+.|+.+|+++++++|+|.
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999999999999999999873
No 10
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.67 E-value=1.3e-15 Score=127.97 Aligned_cols=104 Identities=11% Similarity=-0.041 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
..+..++++|..+...|++++|+..|+++++++|+ ++.+|+++|.++..+|++++|+..|++|++++|++..+|+++|.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44778999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+++..|++++|+.+|+++++++|++
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999975
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.67 E-value=1.4e-15 Score=112.83 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+..+......|..++..|++++|+..|++++..+|. ++.+|.++|.+++.+|++++|+..++++++++|+++..++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 5556777889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.++...|++++|+..|+++++++|++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999865
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.67 E-value=1.6e-15 Score=113.03 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
.+.-+.++..|..++..|++++|...|+-...+||. ++..|+++|.|+..+|+|.+||..|.+|+.++|+++.++++.|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 455778899999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhh
Q 025537 223 ACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
.|++.+|+.+.|.+.|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999887
No 13
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=124.76 Aligned_cols=103 Identities=22% Similarity=0.344 Sum_probs=97.7
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG---GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.|+.+++.||.+|+.++|..|+.+|+++|+. ||+.++.+|+|||.|.+.+|+|..||.||.+|+.++|.+.+++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4899999999999999999999999999986 6777899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|.|++.+.+|++|..+.+..++++-+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999887754
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=6.4e-15 Score=116.47 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCChHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY-LMNDM--PQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~ 218 (251)
+|.+++.|...|..+...|++++|+..|+++++++|+ ++.++.++|.++ ...|+ +++|+..++++++.+|+++.++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 6677899999999999999999999999999999998 999999999985 67787 5999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.+|.+++..|+|++|+.+|+++++++|.+.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999754
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=7.6e-15 Score=128.51 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+.-+..+.+.|..+-++|++++|+.+|..||+++|. .+.+|.|+|.+|..+|+...|+.+|.+||.++|.+++++.++
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 4556788888999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|.+|...|+..+|++.|+.||+++|+.
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999874
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=8.8e-15 Score=128.09 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=103.4
Q ss_pred hhhhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 132 NELSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 132 ~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
.+-.+..+.. .+..++.+.+.|+.+...|.+++|+.+|.+|++..|. .+.+++|+|.+|.++|++++|+..|+.||++
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 3333433333 5677899999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+|.++++|.++|..|-.+|+..+|+++|.+||.++|-
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 9999999999999999999999999999999999995
No 17
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.3e-15 Score=123.93 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 218 (251)
.+..-+.+++.||.+|++|+|.+|.++|+.||.++|+ .++.+|.|||.++.++|+..+||.+|+.|+.++|.+.+++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 3456778999999999999999999999999999996 2577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.++|.|+..+++|++|.++|++|+++.-.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999987644
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=2.7e-14 Score=131.62 Aligned_cols=101 Identities=26% Similarity=0.334 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
..+..++++|+.+|+.|+|++|+.+|+++|++.|+ +.+|.|+|.||..+|+|++|+.+|.+|++++|+++++|+++|.
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45788999999999999999999999999999985 6789999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P 246 (251)
+|..+|+|++|+.+|..++.+++
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~ 225 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDG 225 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999988876655
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.57 E-value=1.2e-14 Score=95.08 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhhh
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEA 246 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~P 246 (251)
++..|.++|.+++..|+|++|+.+|++|++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 67788888888888888888888888888888888888888888888888 68888888888888887
No 20
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.8e-14 Score=111.81 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=95.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
++.++++|+.+|..++|..||.+|.+||.++|. .+..|-|++.||+++++|+.+..+|.+|++++|+.++++|.+|.++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhh
Q 025537 226 FSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~ 245 (251)
.....|++|+..+.+|..+-
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999996653
No 21
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.52 E-value=5.9e-14 Score=115.44 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+.+++.+.+.|+.++..|+|..|+..|..||+.||+ +..+++.||.+|+.+|+-+.|+.++.++|++.|++..+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 5677999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.++.++|++++|..+|+++|.-+|++.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999754
No 22
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.52 E-value=2.7e-13 Score=97.90 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=95.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALY 219 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 219 (251)
+..++..|..+++.|+|++|+..|.++++..|+ + ..+++.+|.+++..|++++|+..+++++..+|++ +.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 456789999999999999999999999999886 4 5789999999999999999999999999999886 68899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 220 LQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|.++..+|++++|...|+++++..|++.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 999999999999999999999999999864
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=1.8e-13 Score=126.08 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+..+..+...|..++..|++++|+..|+++++++|. +...|.++|.++..+|++++|+.+++++++++|+++.+|+.+|
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345566777777777777777777777777777776 7777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 223 ACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+++.+|++++|+.+|+++++++|++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 77777777777777777777777764
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=4.4e-14 Score=92.43 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSP 212 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 212 (251)
+|..+...|..++..|+|++|+.+|+++|+++|+ ++.+|+++|.+++.+| ++.+|+.++++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4788999999999999999999999999999998 9999999999999999 79999999999999998
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.4e-13 Score=117.71 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=98.9
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
++.+...|..+|-.|++-.|...|+++|+++|. +...|..||.+|+...+..+-..+|++|..+||.++..||.+|+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 789999999999999999999999999999998 7778999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhc
Q 025537 226 FSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+-+++|++|+.+|++|++|+|++
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhh
Confidence 99999999999999999999986
No 26
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-13 Score=107.51 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTM---------VSPTVYARRCLSYLMNDMPQEALGDAM 205 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~ 205 (251)
......+.++||.+|+.|+|.+|...|..||-. .|. ....++.|.++|++..|+|.++++.|+
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345678889999999999999999999999832 343 145689999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
..+...|.+.+|||++|.++...-+.++|..+|.++|+++|.-
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999999999963
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.49 E-value=5.5e-13 Score=90.90 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=94.2
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
.+...|..++..|++++|+..+.++++..|. +..++..+|.++...+++++|+..+++++...|.+..+++.+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3668899999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhh
Q 025537 228 LGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 228 ~~~~~~A~~~~~~al~l~P~ 247 (251)
.|++++|...+.++++++|+
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999884
No 28
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.49 E-value=1.9e-14 Score=123.04 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=99.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
|..++.+++.+|..+.|+.|+..|++||+++|+ ++.+|.+|+.++++.++|..|+.|+.+||+++|.+.++|+++|.+.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 677889999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 226 FSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+++|.+|+.+|++...+.|++.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcH
Confidence 999999999999999999999863
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.47 E-value=1.6e-12 Score=100.69 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY 219 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 219 (251)
....+..++..|..+...|+|++|+.+|.++++..|+. ...++.++|.++..+|++++|+..+.+++.+.|+++.+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45668889999999999999999999999999887641 2578999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC--------------HHHHHHHHHHHHhhhhhc
Q 025537 220 LQAACLFSLGM--------------ENDARETLKDGTNLEAKK 248 (251)
Q Consensus 220 ~~g~~~~~~~~--------------~~~A~~~~~~al~l~P~~ 248 (251)
.+|.++..+|+ +++|++.++++++++|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999998 788999999999999985
No 30
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=119.88 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=98.8
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
+++...-+|..|.-.|+|++|+.+|+.||..+|. +..+|+.+|.++..-.+..+||..|++|+++.|.++.++|++|.+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 3566668899999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+..+|.|+||..+|-.||.+.++..
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999844
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=1.4e-12 Score=109.68 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+|..+..+...|..+...|+|++|+..|+++++++|+ +..+|.++|.+++..|++++|+.+|+++++++|+++...+..
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 172 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL 172 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5667889999999999999999999999999999998 999999999999999999999999999999888775311111
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 025537 222 AACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al 242 (251)
......+++++|+..|.+++
T Consensus 173 -~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 173 -YLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred -HHHHccCCHHHHHHHHHHHH
Confidence 12223445555555554443
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.8e-14 Score=123.73 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
++..++.|...||.+.-+++++.||.+|.+||.+||. .+-+|-.+|.=+....+|+.|...|++||..+|.+.-|||.+
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 4556889999999999999999999999999999997 888888888888888888999999999999999888899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.+|.++++++.|.-+|++|++++|.+.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccch
Confidence 9999999999999999999999888764
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=9e-13 Score=119.92 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhHHHh---------hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537 143 MQETLNSKKHGDTAFR---------AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD 213 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 213 (251)
|..+..+...|..++. .+++++|+..+++|++++|+ ++.+|..+|.++...|++++|+..|++|++++|+
T Consensus 292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3445555555554442 23477788888888888877 7777777888877788888888888888888888
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++.+|+.+|.++...|++++|+..|+++++++|.+
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888888888888888887764
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=1.5e-12 Score=124.20 Aligned_cols=103 Identities=8% Similarity=-0.099 Sum_probs=99.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
+..+...|..+.+.|++++|+..|.++++++|+ ++.+++++|.++..+|++++|+..+.+|++++|+++.+++++|.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 678889999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 226 FSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+|++++|+.+|+++++++|++-
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999863
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=3.2e-13 Score=91.93 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=74.3
Q ss_pred hcCHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 025537 159 AKDFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET 237 (251)
Q Consensus 159 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~ 237 (251)
+|+|+.|+..|+++++.+|.. +...++++|.||+++|+|++|+..+++ ++.+|.++..++.+|.+++.+|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 689999999999999999852 467788899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 025537 238 LKDG 241 (251)
Q Consensus 238 ~~~a 241 (251)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=3.5e-12 Score=116.08 Aligned_cols=103 Identities=11% Similarity=-0.049 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+|..+..+...|..+...|++++|+..|++|++++|+ ++.+|+++|.++..+|++++|+..+++|++++|.++.+++.+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 6677888999999999999999999999999999998 999999999999999999999999999999999999888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
+.+++..|++++|+..++++++.+
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc
Confidence 888999999999999999999875
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.40 E-value=8.7e-12 Score=96.16 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
..+..+...|..++..|+|++|+..|.+++.+.|+. .+.+|.++|.++..+|++++|+..+.+|+.++|.+..+++.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 457888999999999999999999999999886641 346899999999999999999999999999999999999999
Q ss_pred HHHHH-------hCCCHH-------HHHHHHHHHHhhhhhc
Q 025537 222 AACLF-------SLGMEN-------DARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~-------~~~~~~-------~A~~~~~~al~l~P~~ 248 (251)
|.++. .+|+++ +|+..|++++.++|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999 777766 6666777788888864
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.39 E-value=2.9e-12 Score=96.27 Aligned_cols=87 Identities=15% Similarity=0.007 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+|..+..+..+|..+...|+|++|+..|+++++++|. ++.+++++|.++..+|++++|+..|.+|++++|+++..+..+
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 6677899999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 025537 222 AACLFSLG 229 (251)
Q Consensus 222 g~~~~~~~ 229 (251)
|.+...++
T Consensus 133 ~~~~~~l~ 140 (144)
T PRK15359 133 QNAQIMVD 140 (144)
T ss_pred HHHHHHHH
Confidence 99876543
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=7.8e-12 Score=97.88 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=97.0
Q ss_pred hhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 025537 134 LSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-- 210 (251)
Q Consensus 134 ~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 210 (251)
..++...+ +|.....+.-++-.|-+.|+.+.|-+.|++|++++|+ +.++++|-|-.+..+|+|++|...|++|+..
T Consensus 56 ~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~ 134 (250)
T COG3063 56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPA 134 (250)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC
Confidence 33444343 7777888888999999999999999999999999998 9999999999999999999999999998873
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 211 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.|..+..|-++|.|..+.|+++.|...|+++|+++|++-
T Consensus 135 Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 135 YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 445578899999999999999999999999999999863
No 40
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.38 E-value=1.9e-11 Score=87.56 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----PTAL 218 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~ 218 (251)
++....+..+|..+...|+.+.|++.|.++|.+.|. ++.+|+||+.++..+|+.++|+.+.++|+++.-+. ..+|
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 344667778899999999999999999999999998 99999999999999999999999999999997655 4678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
..+|.+|..+|+-+.|..+|+.+-++..
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999999999999987754
No 41
>PLN02789 farnesyltranstransferase
Probab=99.37 E-value=2.2e-11 Score=102.87 Aligned_cols=112 Identities=10% Similarity=-0.053 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHHhHHHhhc-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCC
Q 025537 137 QMWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP--QEALGDAMQAQVVSPD 213 (251)
Q Consensus 137 ~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~ 213 (251)
+.+.-+|.....+..+|..+...| ++++|+.+++++++.+|+ +..+|++|+.++.++|+. ++++..++++++++|+
T Consensus 62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk 140 (320)
T PLN02789 62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK 140 (320)
T ss_pred HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc
Confidence 334447778889999999999988 689999999999999999 999999999999999974 7899999999999999
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 214 WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+..+|+.+|.++..+|+|++|++++.++|++||+|.
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 999999999999999999999999999999999874
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.36 E-value=8.7e-12 Score=101.25 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=95.7
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH---HHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---ALY 219 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 219 (251)
+..++..|..++..|+|++|+..|++++...|. ++ .+++.+|.+++.+|++++|+..++++++.+|+++. +++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 677889999999999999999999999999997 54 68899999999999999999999999999998876 799
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHhhhhhcc
Q 025537 220 LQAACLFSL--------GMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 220 ~~g~~~~~~--------~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|.+++.. |++++|+..|+++++.+|++.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 999999987 899999999999999999864
No 43
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=2.2e-11 Score=112.81 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.|..+..+...|..++..|++++|+..|+++++++|+ ++.++.++|.++..+|++++|+..+++++..+|+++.+++.+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 4555677778888888888888888888888888887 788888888888888888888888888888888887777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|.++..+|++++|+..|+++++++|++
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 888888888888888888888888774
No 44
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=1.5e-11 Score=113.36 Aligned_cols=103 Identities=7% Similarity=-0.047 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
..++.+...|......|.+++|...+..+++++|+ +..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33556666666666666666666666666666665 66666666666666666666666666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
++.++|+|++|...|++++..+|+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCC
Confidence 666666666666666666665554
No 45
>PRK15331 chaperone protein SicA; Provisional
Probab=99.35 E-value=1.4e-11 Score=92.46 Aligned_cols=102 Identities=9% Similarity=0.014 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
+.-+..+..|-.++..|++++|...|+-..-++|. ++..|+.+|.|+..+++|++|+..|..|..+++++|...|+.|.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 45677889999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
||..+|+.+.|+.+|..+++ .|+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 99999999999999999987 343
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.8e-11 Score=96.66 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS--PDWPTALY 219 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 219 (251)
.+..+..+...|..++..|++++|+..|.++++..|. +..++.++|.++...|++++|+..+.+++... |.....++
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHH
Confidence 4566788899999999999999999999999999998 89999999999999999999999999999864 56678899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 220 LQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+|.++...|++++|...|.++++.+|++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999875
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.34 E-value=4.1e-12 Score=81.98 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 186 RRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 186 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555666666666666666666666666666666666666666666666666666666553
No 48
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.33 E-value=7.4e-12 Score=80.77 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP 215 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 215 (251)
+.+|..++..|+|++|+..|+++++.+|+ ++.+|+.+|.++..+|++++|+..|+++++++|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36799999999999999999999999998 999999999999999999999999999999999986
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.33 E-value=2.3e-11 Score=112.18 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=102.7
Q ss_pred hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
++...+ .|+.+.+....+..+++.+++++|+..++++++.+|+ ++.+++.+|.++.++|++++|+..|++++..+|++
T Consensus 109 l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 109 WRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 333333 6788999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
+.++..+|.++..+|+.++|...|++|++..-
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999997643
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-11 Score=104.09 Aligned_cols=110 Identities=16% Similarity=0.078 Sum_probs=96.0
Q ss_pred hhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 136 FQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 136 ~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
|+.... ++.....|.-.|-.+...++-..|++.|++|++.+|. +..+|+.+|++|--++.+.=|+-+|++|+.+.|++
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 444444 5566777888899999999999999999999999998 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
+..|.-+|.||.++++.++|+++|++++...-
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987653
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.2e-12 Score=113.86 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=52.3
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
=+|...|-.+....+|+.|..+|++||..+|. ...+|+.+|.+|+++++++.|.-.|++|+.++|.+.-.....|.++.
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence 34444455555555555555555555555554 55555555555555555555555555555555555555555555555
Q ss_pred hCCCHHHHHHHHHHHHhhhhh
Q 025537 227 SLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 227 ~~~~~~~A~~~~~~al~l~P~ 247 (251)
++|+.|+|+..|++|+-+||.
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCC
Confidence 555555555555555555554
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=1.9e-11 Score=96.71 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=85.1
Q ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HhCCC--HHHHH
Q 025537 159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL-FSLGM--ENDAR 235 (251)
Q Consensus 159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A~ 235 (251)
.++.++++..+.++++.+|+ +..+|..+|.+|+.+|++++|+..|.+|++++|+++.+++.+|.++ ...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 67889999999999999999 9999999999999999999999999999999999999999999985 77788 59999
Q ss_pred HHHHHHHhhhhhcc
Q 025537 236 ETLKDGTNLEAKKN 249 (251)
Q Consensus 236 ~~~~~al~l~P~~~ 249 (251)
..++++++++|++.
T Consensus 131 ~~l~~al~~dP~~~ 144 (198)
T PRK10370 131 EMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHhCCCCh
Confidence 99999999999864
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=5e-11 Score=95.18 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.....+...|..++..|++++|+..|.++++.. |. ....+.++|.++...|++++|+..+.+++..+|+++.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 345677889999999999999999999999864 33 567899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|.++...|++++|...+++++++.|.
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998664
No 54
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.31 E-value=4.4e-11 Score=98.29 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=91.6
Q ss_pred HHHHHHHhHH-HhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHH
Q 025537 147 LNSKKHGDTA-FRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALY 219 (251)
Q Consensus 147 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 219 (251)
...++.+..+ ++.|+|++|+..|++.++..|+ + +.+++.+|.+|+..|+|++|+..|.+++...|+ .+++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3445666665 6679999999999999999997 4 579999999999999999999999999999887 489999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 220 LQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|.++..+|++++|...|+++++..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 999999999999999999999999999853
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=4.1e-11 Score=93.92 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY 219 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 219 (251)
++.+.+.+.+-|-.++.+|+|++|...|++|+..- |. -+..|-|+|.|.+++|+++.|..+++++++++|+++....
T Consensus 99 ~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 44455666666666666666666666666666432 12 3456666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 025537 220 LQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al 242 (251)
.++..++..|+|-.|...+++..
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHH
Confidence 66666666666666666665543
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.30 E-value=3.4e-11 Score=111.62 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhHHHhhcCHHH----HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFST----AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 218 (251)
+..+..+...|..++..|++++ |+..|+++++++|+ +..++.++|.++..+|++++|+..+++++.++|+++.++
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4456677888999999999986 89999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+.+|.++..+|++++|+..|+++++.+|++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999998875
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.29 E-value=5.8e-11 Score=94.67 Aligned_cols=104 Identities=15% Similarity=0.036 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+.+...+..+|...++.|+|.+|+..+.++..++|+ +..+|+.+|.+|.+.|++++|-..|.+|+++.|+.+....++|
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 444566677999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 223 ACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
..|+..|+++.|...+..+...-+.
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998766553
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-11 Score=103.04 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=95.6
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL 228 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 228 (251)
.--.||-|.-++++++|+.+|++|++++|. ...+|-..|.=|+.+++-..|+..|++|++++|.+..+||.+|++|..+
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 335688899999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhhhcc
Q 025537 229 GMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 229 ~~~~~A~~~~~~al~l~P~~~ 249 (251)
+-..=|+-+|++|+++.|++.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPNDS 432 (559)
T ss_pred cchHHHHHHHHHHHhcCCCch
Confidence 999999999999999999875
No 59
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-10 Score=95.42 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChH
Q 025537 140 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDWPT 216 (251)
Q Consensus 140 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~ 216 (251)
.++|.+++.|...|..|+..|++..|...|.+|+++.|+ |+..+..+|.+++... .-.++...+++|+++||+++.
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 347788999999999999999999999999999999998 9999999999988754 458899999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 217 ALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.+.+|..+++.|+|.+|...++..+.+.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999764
No 60
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=1.1e-10 Score=111.51 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=88.0
Q ss_pred HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH
Q 025537 152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME 231 (251)
Q Consensus 152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 231 (251)
.+......|++++|+..|.++++++|+ ..+|.++|.++.++|++++|+..+.+++.++|+++.+++.+|.++...|++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 344445559999999999999999994 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 025537 232 NDARETLKDGTNLEAKK 248 (251)
Q Consensus 232 ~~A~~~~~~al~l~P~~ 248 (251)
++|+..|+++++++|++
T Consensus 660 eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 660 AQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999975
No 61
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.22 E-value=9.5e-12 Score=102.47 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
....+...+-++..++..|.+++||+.|+.||.++|. ++.+|.+|+.++++++++..|+.+|..|++++|+.++.|-.+
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 4455677888889999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|.+...+|++++|..++..+++++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999988754
No 62
>PLN02789 farnesyltranstransferase
Probab=99.21 E-value=1.7e-10 Score=97.53 Aligned_cols=110 Identities=6% Similarity=-0.100 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537 140 TSQMQETLNSKKHGDTAFRAKDF--STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA 217 (251)
Q Consensus 140 ~~~~~~a~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 217 (251)
..+++..+.+..+|..+.+.|++ ++++.+++++|+.+|+ |..+|++|+.++..+|+|++|+++|.++|+.+|++..+
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 34666777888888888777764 7889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC---CCH----HHHHHHHHHHHhhhhhccC
Q 025537 218 LYLQAACLFSL---GME----NDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 218 ~~~~g~~~~~~---~~~----~~A~~~~~~al~l~P~~~~ 250 (251)
|+.+|.++..+ |.+ ++++.+..++|+++|+|..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence 99999999877 333 5788888899999999863
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=1.6e-10 Score=113.66 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT--------------VYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
.+..+..+...|..+++.|++++|+.+|+++++.+|+ +.. ....+|.++...|++++|+..|+++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667888999999999999999999999999999986 432 2245588899999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 208 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 208 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.++|+++.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999853
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-11 Score=104.61 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT----MV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP 215 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 215 (251)
.|.++-.+.+.|...|..+.|.+|+.+|..++..-+ .. -...+.|+|.++.+++.|.+||..+++||.+.|.++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 455677888999999999999999999999994322 10 245689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|-..|.+|..+|+++.|+.+|.++|.++|+++
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 9999999999999999999999999999999874
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=3.1e-10 Score=107.12 Aligned_cols=106 Identities=12% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+..+..+...|..+...|++++|+..|+++++++|. ++.++..++.++...|++++|+..++++++.+|+++. ++.+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 3345667899999999999999999999999999998 9999999999999999999999999999999999999 9999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.++...|++++|+..|+++++++|++.
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999863
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=5.6e-11 Score=99.12 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
.++..+...|..+.+.|++++|+.+|+++++++|+ +..+...++.++...|+++++...+....+..|+++..+..+|.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45778889999999999999999999999999998 99999999999999999999888888888888899999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++..+|++++|+..|+++++.+|++
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred Hhccccccccccccccccccccccc
Confidence 9999999999999999999999975
No 67
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.19 E-value=7.5e-10 Score=81.40 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=94.7
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYL 220 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 220 (251)
+..++..|...++.|+|.+|+..|+.....-|. ....+...++.+|++.++|.+|+..+++-|+++|++ +.++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 567889999999999999999999998888774 145788999999999999999999999999999988 578999
Q ss_pred HHHHHHhCCC---------------HHHHHHHHHHHHhhhhhcc
Q 025537 221 QAACLFSLGM---------------ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 221 ~g~~~~~~~~---------------~~~A~~~~~~al~l~P~~~ 249 (251)
+|.+++.+.. ..+|...|++.++.-|+++
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999987 9999999999999999864
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=1.6e-10 Score=85.55 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=77.7
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 167 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 167 ~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
..|.++++.+|+ +..+.+.+|.+++..|++++|+..+++++..+|+++.+|+.+|.++..+|++++|...|+++++++|
T Consensus 4 ~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 025537 247 KK 248 (251)
Q Consensus 247 ~~ 248 (251)
++
T Consensus 83 ~~ 84 (135)
T TIGR02552 83 DD 84 (135)
T ss_pred CC
Confidence 75
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=7e-10 Score=99.75 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCChHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALG--DAMQAQVVSPDWPTALY 219 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~ 219 (251)
.+.-+..++..|..+..+|++.+|.+.|..|+.++|+ .......+|.++.+.|+..-|.. ....|++++|.++++||
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 4566889999999999999999999999999999998 99999999999999998877777 99999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 220 LQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+|.++..+|+.++|..+|..|++|++.+
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999998864
No 70
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.16 E-value=1.8e-10 Score=99.26 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537 141 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQVVS 211 (251)
Q Consensus 141 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 211 (251)
.++..++.+.++|..++..|+|++|+..|++||+++|+ +.. +|+|+|.||..+|++++|+.++.+|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778999999999999999999999999999999998 775 59999999999999999999999999983
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.16 E-value=3.9e-10 Score=110.90 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH--------------------------------
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL-------------------------------- 189 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~-------------------------------- 189 (251)
.+..+..+...|..+...|++++|+..|+++++.+|. +..++.+++.
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3445667888999999999999999999999999997 7666554443
Q ss_pred ----------HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 190 ----------SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 190 ----------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44567999999999999999999999999999999999999999999999999998875
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.15 E-value=6e-10 Score=105.72 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
.+..+...|..++..|+|++|+..|+++++.+|. +..++..++.+++..|++++|+..++++++.+|.++.+++.+|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445555666666666666666666666666665 555666666666666666666666666666666666666666666
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+...|++++|...|+++++++|++
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666666665543
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.8e-10 Score=97.97 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=99.9
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---------------------------
Q 025537 131 ANELSFQMWTS-QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT--------------------------- 182 (251)
Q Consensus 131 ~~~~~~~~~~~-~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------------- 182 (251)
+..+.|+.... +|+.+++|..+|......++=..||..+.+|++++|+ |..
T Consensus 303 ~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 303 EAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34566666554 8899999999999999999999999999999988886 433
Q ss_pred --------------------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537 183 --------------------------------------------------VYARRCLSYLMNDMPQEALGDAMQAQVVSP 212 (251)
Q Consensus 183 --------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 212 (251)
+...+|..|+..|+|++|+.+|+.||..+|
T Consensus 382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 345566778888899999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
++...|.++|..+..-.+.++|+..|.+|++|.|+..
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 9999999999999999999999999999999999753
No 74
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=2e-10 Score=93.38 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+|.+|-.|-+++.+|.+.|.|+.|+.....||.+||. ...+|..+|.+|+.+|+|++|++.|++||+++|+|...+-++
T Consensus 111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 5678899999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHH
Q 025537 222 AACLFSLGMEN 232 (251)
Q Consensus 222 g~~~~~~~~~~ 232 (251)
..+-..+++..
T Consensus 190 ~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 190 KIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhcCCC
Confidence 99888887766
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=8.1e-10 Score=104.32 Aligned_cols=103 Identities=13% Similarity=-0.013 Sum_probs=98.4
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+...|..+...|++++|+..+++++...|+ +..++.++|.++...|++++|+..+++|+.++|+++.+++.+|.++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 345678899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 226 FSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+|++++|...++++++.+|++.
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999864
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=1.3e-09 Score=90.26 Aligned_cols=107 Identities=19% Similarity=0.281 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+++-..+..+...++..|++.-||...++.|+..|. ++.+|..|+.||..-|+...||.+.+.|-++..++.+++|..
T Consensus 151 ~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 151 LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 4455667778888899999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+..++..|+.+.++...++||++||+..
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 9999999999999999999999999864
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=9.5e-10 Score=89.25 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=91.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCC
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMN--------DMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~ 214 (251)
...+...|..++..|++++|+..|+++++..|+ ++. +++.+|.+++.. |++++|+..+++++..+|++
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 467889999999999999999999999999997 554 789999999987 88999999999999999998
Q ss_pred hHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 215 PTAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 215 ~~~~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
..++ +.+|..|+..|++.+|+..|+++++..|+.
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 6543 467889999999999999999999998864
No 78
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.13 E-value=4.3e-10 Score=74.15 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=56.3
Q ss_pred HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
...+++.++|++|+.++++++.++|. ++.+|..+|.++..+|+|.+|+.+++++++.+|+++.+..-++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35677888888888888888888887 8888888888888888888888888888888888877765554
No 79
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=95.03 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHh
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTALYLQAACLFS 227 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 227 (251)
+...|..++..|++++|+..|.++++.+|+ +..++..+|.++.+.|++++|+..+++++..+|++ ..++..++.+|..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 445566666667777777777777766665 66666666777777777777777777777666655 3455666667777
Q ss_pred CCCHHHHHHHHHHHHhhhhh
Q 025537 228 LGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 228 ~~~~~~A~~~~~~al~l~P~ 247 (251)
.|++++|+..++++++++|+
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 77777777777777666665
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.11 E-value=2.1e-10 Score=74.53 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
+++.|+|++|+..|++++..+|+ +..++..+|.||++.|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 35678899999999999999988 88888899999999999999999999999999988777766654
No 81
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=7.2e-10 Score=105.22 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+.+...+...|..+...|++++|+..|+++++..|+ ++.++.+++.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 445678888999999999999999999999999998 99999999999999999 8899999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 223 ACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.++..+|++++|+..|+++++++|.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999974
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.10 E-value=1.3e-09 Score=99.38 Aligned_cols=107 Identities=12% Similarity=0.000 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537 139 WTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 139 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 218 (251)
+.+++.....|+..|..+-+.|+.++|..+...|--++|+ +...|..++.-..++|.+.+|+-+|.+||..+|.+.+..
T Consensus 166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~ 244 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI 244 (895)
T ss_pred HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence 3334444445555555555555555555555555555554 445555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
++++..|.++|++..|+..|.+.++++|
T Consensus 245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 245 YERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 5555555555555555555555555554
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.10 E-value=1.4e-09 Score=94.60 Aligned_cols=104 Identities=17% Similarity=0.062 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
.....+...|..+.+.|++++|+..|+++++.+|.....++..++.+|...|++++|+..+++++...|+...+ ..+|.
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~ 290 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQ 290 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHH
Confidence 34556777888888888888888888888888776235667778888888888888888888888888876544 77888
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++...|++++|+..|+++++.+|++
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 8888888888888888888888865
No 84
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.10 E-value=4.7e-11 Score=102.78 Aligned_cols=74 Identities=30% Similarity=0.578 Sum_probs=63.3
Q ss_pred CEEEeecCCC-CCch----------hhhHHHHcCCcccccccccc-CCCCH-HHHHHHHHHHhcccCcCCCCCCCHHHHH
Q 025537 1 MLLDLLSGKH-IPPS----------HALDLIRSKNFLLLMDSALE-GHFSN-DEGTELVRLASRCLQSEARERPNAKSLV 67 (251)
Q Consensus 1 vlLEl~tgr~-~~~~----------~~~~~~~~~~~~~~~d~~l~-~~~~~-~~~~~~~~va~~C~~~~p~~RP~m~~v~ 67 (251)
|||||+|||+ +|.. ++++.+..+.+.+++||+|. +.+.. +++.+++.+|++|++.+|..||+|.+|+
T Consensus 267 vllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv 346 (361)
T KOG1187|consen 267 VLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV 346 (361)
T ss_pred HHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence 5789999999 7743 25677788889999999997 66665 7899999999999999999999999999
Q ss_pred HHHHhhh
Q 025537 68 ISLMSLQ 74 (251)
Q Consensus 68 ~~L~~~~ 74 (251)
++|..+.
T Consensus 347 ~~L~~~~ 353 (361)
T KOG1187|consen 347 KELEGIL 353 (361)
T ss_pred HHHHhhc
Confidence 9996554
No 85
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.10 E-value=3.9e-09 Score=76.21 Aligned_cols=97 Identities=18% Similarity=0.034 Sum_probs=87.0
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALYLQ 221 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~ 221 (251)
..+++.|..+-..|+.++|+.+|.++++..... ...++.++|.++..+|++++|+..+++++.-.|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456788999999999999999999999975431 3568999999999999999999999999999898 88889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 025537 222 AACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~ 243 (251)
+.+++.+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.09 E-value=1.9e-09 Score=98.46 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCCccchhhhhhhhhhHH--HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 025537 115 IHEILEGMGYKDDEGIANELSFQMWTS--QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL 192 (251)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~ 192 (251)
++..+.-.+.+..+..+..+++..... .....+-+++.+.++...|+|.+|+.+|..++...+..+..+|.++|.||+
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 444444444444443333344433222 445688999999999999999999999999999998778899999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537 193 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 193 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 242 (251)
.+|.+++|++.|.+++.+.|++.++...++.++.++|++++|.+.+....
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999988766
No 87
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.08 E-value=4.8e-10 Score=73.91 Aligned_cols=62 Identities=31% Similarity=0.376 Sum_probs=59.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+|+..++|++|+..+++++.++|+++.+|+.+|.++..+|+|.+|..+|+++++++|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 56889999999999999999999999999999999999999999999999999999999753
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=8.9e-10 Score=94.92 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+..+..+..+|..++..|+|++|+..++++++++|. ++.+|+++|.+++.+|+|++|+..|+++++++|+++.++..+
T Consensus 32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5566889999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 025537 222 AACLFSLG 229 (251)
Q Consensus 222 g~~~~~~~ 229 (251)
+.+...+.
T Consensus 111 ~~~~~kl~ 118 (356)
T PLN03088 111 KECDEKIA 118 (356)
T ss_pred HHHHHHHH
Confidence 99877663
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.04 E-value=4.3e-09 Score=79.09 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=83.8
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
........|..++..|+|++|+..|++++...|+. ...+..+++.+++..|+|++|+..++. +.-.+-.+.++..+|
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 35677889999999999999999999999987652 246788899999999999999999966 444555678889999
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 025537 223 ACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al 242 (251)
.+|...|++++|...|++||
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999985
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=6.1e-09 Score=84.96 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=89.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALY 219 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 219 (251)
++.++..|..++..|+|++|+..|++.+...|. .+.+ .+.+|.+|+++++|.+|+..+++.++..|++ +.++|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 556788999999999999999999999999997 5544 4889999999999999999999999999987 57899
Q ss_pred HHHHHHHhCCC------------------HHHHHHHHHHHHhhhhhcc
Q 025537 220 LQAACLFSLGM------------------ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 220 ~~g~~~~~~~~------------------~~~A~~~~~~al~l~P~~~ 249 (251)
.+|.++..++. ..+|+..|++.++..|+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 99998766541 3578899999999999753
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.7e-10 Score=96.00 Aligned_cols=97 Identities=26% Similarity=0.378 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
..+.++..+.+|+.+++.++|..|+..|+.||+++|+ ++..|.||+.+++.+++|++|+.++++.++++|.+.+++.+.
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 3456889999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 025537 222 AACLFSLGMENDARETLK 239 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~ 239 (251)
+.++..+++..+|...|+
T Consensus 124 ~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hhhhhhhHHHHHHHHHhh
Confidence 999999999999987665
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.02 E-value=1e-09 Score=94.62 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=67.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHhh-hh
Q 025537 175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA---LYLQAACLFSLGMENDARETLKDGTNL-EA 246 (251)
Q Consensus 175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~al~l-~P 246 (251)
.+|+ ++.+|+|+|.+|+.+|+|++|+..|++||+++|+++.+ ||++|.+|..+|++++|+.+|++|+++ +|
T Consensus 70 ~dP~-~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 70 ADVK-TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 6888 99999999999999999999999999999999999965 999999999999999999999999998 44
No 93
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=1.5e-08 Score=81.98 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=94.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYL 220 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 220 (251)
+..+++.+-.+++.|+|..|...|..-|+.-|+. .+.+++-+|.+++.+|+|+.|...|..+++-.|++ |++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4458899999999999999999999999998852 46789999999999999999999999999998876 578999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 221 QAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 221 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+|.+...+|+.++|...|+++++--|+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999874
No 94
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=2.4e-09 Score=83.46 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+...|.-++++|..|-..|-+.-|...|++++.+.|+ .+.+|+.+|.-+..-|+|+.|.+.|+..+++||.+--++.++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 3456888999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|.+++--|+|.-|..++.+--+-||++
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 999999999999999999998888875
No 95
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.96 E-value=2.4e-09 Score=81.29 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC-
Q 025537 162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM----------PQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM- 230 (251)
Q Consensus 162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~- 230 (251)
|+.|.+.++.....+|. ++..+.+.|.+++.+.+ +++|+.-+++||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 68899999999999998 99999999998887633 4668888999999999999999999999988775
Q ss_pred ----------HHHHHHHHHHHHhhhhhcc
Q 025537 231 ----------ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 231 ----------~~~A~~~~~~al~l~P~~~ 249 (251)
|++|..+|++|..++|+++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 8999999999999999874
No 96
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.95 E-value=1.3e-08 Score=80.87 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=86.9
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALY 219 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 219 (251)
.+..++..|..++..|+|.+|+..|++.+...|.. ...+.+.+|.++++.|+|..|+..+++.++..|+++ .++|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988751 457889999999999999999999999999999874 6899
Q ss_pred HHHHHHHhCC-----------CHHHHHHHHHHHHhhhhhcc
Q 025537 220 LQAACLFSLG-----------MENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 220 ~~g~~~~~~~-----------~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|.+++.+. ...+|+..|+..++..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9999976653 34689999999999999864
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=9.1e-09 Score=88.48 Aligned_cols=101 Identities=8% Similarity=-0.149 Sum_probs=90.9
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----HHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----TALYL 220 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~ 220 (251)
....+...|..+...|++++|+..++++++++|+ +..++..+|.+++..|++++|+..+.+++...|..+ ..|+.
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 3455667888999999999999999999999998 899999999999999999999999999999987543 35678
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 221 QAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 221 ~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
+|.++...|++++|+..|++++...|
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999987766
No 98
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.94 E-value=5.7e-09 Score=78.09 Aligned_cols=76 Identities=8% Similarity=-0.051 Sum_probs=70.0
Q ss_pred HccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 173 IDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 173 l~~~-p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
...+ ++ .-+..+.+|.-++..|++++|...|+.+..++|.++..|+++|.++..+|+|.+|+..|.+|+.++|++-
T Consensus 27 ~~~~~~~-~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 27 LDDDVTQ-PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3455 55 6778888999999999999999999999999999999999999999999999999999999999999864
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=1.2e-08 Score=81.68 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.|.+... ......+...|+-+.+.....++....|. +..+..-.|...+..|+|.+|+..+.+|..++|+++++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4444555 67778888889999999999998888887 888888899999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.+|.++|++++|...|.+++++.|++.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999853
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.93 E-value=1.4e-09 Score=72.74 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVV----S---PDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
.+.+++++|.+|..+|+|++|+..|++|+.+ . |.-..+++++|.++..+|++++|++.|++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567788888888888888888888888765 1 2235678888888888888888888888888764
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=87.94 Aligned_cols=101 Identities=21% Similarity=0.191 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
.++-.+-..|..++..++.++|++.+.+++.++|+ .+.++.++|.++++.|++++|+...+..+.-+|+++..|..+|.
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAq 416 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQ 416 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 34445556667777777777777777777777776 66777777777777777777777777777777777777777777
Q ss_pred HHHhCCCHHHHHHHHHHHHhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~ 245 (251)
+|..+|+-.+|...+.+...+.
T Consensus 417 ay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 417 AYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHhCchHHHHHHHHHHHHhC
Confidence 7777776666666666655544
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.93 E-value=3.2e-09 Score=68.85 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 191 YLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 191 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3578999999999999999999999999999999999999999999999999999985
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=2.1e-08 Score=86.48 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
......+-.+..++..|++++|...++..+...|+ |+.++..++.+++..++.++|++.+++++.++|+.+..++.+|.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34556778888999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
+|.+.|++.+|+..+...+.-+|++-+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 999999999999999999999998754
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=4.5e-08 Score=84.14 Aligned_cols=66 Identities=14% Similarity=-0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.++..+|.++..+|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++++.|.
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 345567789999999999999999999999999999999999999999999999999999998874
No 105
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.89 E-value=1.6e-08 Score=95.25 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=52.8
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM 230 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 230 (251)
.....+...|++++|+.++++++.-.|. ....+..+|.++..+|+|++|++.|+++++.+|+++.+++.++.++...++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~-~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNI-SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 4444444455555555555555522211 222222234466666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhhhh
Q 025537 231 ENDARETLKDGTNLEAK 247 (251)
Q Consensus 231 ~~~A~~~~~~al~l~P~ 247 (251)
+++|+..++++..++|+
T Consensus 152 ~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 152 GGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHhcccCcc
Confidence 66666666666666654
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=2e-08 Score=86.86 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=84.5
Q ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 025537 159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETL 238 (251)
Q Consensus 159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 238 (251)
..+-.+|.++-.+|++++|. ++.++..+|.++...++++.|+..|++|+.++|+++.+||..|.+....|+.++|.+++
T Consensus 317 ~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567889999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhc
Q 025537 239 KDGTNLEAKK 248 (251)
Q Consensus 239 ~~al~l~P~~ 248 (251)
++|++++|..
T Consensus 396 ~~alrLsP~~ 405 (458)
T PRK11906 396 DKSLQLEPRR 405 (458)
T ss_pred HHHhccCchh
Confidence 9999999974
No 107
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=6.3e-09 Score=86.78 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.|.+.......+..+...|++++|...+....+..|. ++.++..+|.++..+|++++|+..++++++.+|+++..+..+
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 5556777788899999999999988888888777777 888999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhh
Q 025537 222 AACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l 244 (251)
|.++...|++++|...++++++.
T Consensus 255 a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 255 ADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT------------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999998764
No 108
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6e-08 Score=82.15 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=89.4
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
..+.+.+..+.+.++|.+|+..-+++|+++|. |..+++.+|.+++.+|+|+.|+.+|++|++++|+|-.+...+..+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 36778999999999999999999999999998 99999999999999999999999999999999999999999988888
Q ss_pred hCCCHHHH-HHHHHHHHhhhh
Q 025537 227 SLGMENDA-RETLKDGTNLEA 246 (251)
Q Consensus 227 ~~~~~~~A-~~~~~~al~l~P 246 (251)
...++.+. .+.|...+..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 87777665 777777776544
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=3.1e-08 Score=76.27 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=80.3
Q ss_pred hHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCC
Q 025537 154 DTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLG 229 (251)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~ 229 (251)
+-+|-.+.|..+...+...++..+. ....+|+++|.++..+|++++|+..|++|+.+.|+. +.+|+++|.++..+|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 3455567788888888776666553 136788999999999999999999999999997763 468999999999999
Q ss_pred CHHHHHHHHHHHHhhhhhc
Q 025537 230 MENDARETLKDGTNLEAKK 248 (251)
Q Consensus 230 ~~~~A~~~~~~al~l~P~~ 248 (251)
++++|+..|+++++++|.+
T Consensus 87 ~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 87 EHTKALEYYFQALERNPFL 105 (168)
T ss_pred CHHHHHHHHHHHHHhCcCc
Confidence 9999999999999998864
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=3.8e-08 Score=88.43 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
.+.+....|...+..++|.+|..+++.+++++|- ....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 3445555666677789999999999999999997 899999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhh
Q 025537 225 LFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P 246 (251)
|..+++-.+|...+++|++.+-
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999873
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=8.4e-08 Score=90.45 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=89.7
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+...|..+...|+|++|++.|+++++.+|+ ++.++..++.++...+++++|+..+++++..+|.+... ..++.++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 445556688899999999999999999999999 89999999999999999999999999999999986554 5556666
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 226 FSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..++++.+|+..|+++++++|++.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCH
Confidence 668888779999999999999875
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=2.5e-08 Score=66.49 Aligned_cols=68 Identities=13% Similarity=0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC---C-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG---T-M--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 211 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p-~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 211 (251)
..+..+.+.|..++..|+|++|+.+|++++++. + + ..+.+++++|.++..+|++++|+..+++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457788999999999999999999999999661 1 1 136789999999999999999999999999863
No 113
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.75 E-value=1.4e-07 Score=84.92 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhHHHhh--------cCHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537 142 QMQETLNSKKHGDTAFRA--------KDFSTAIDCYTQFIDG--GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 211 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 211 (251)
+|..+..+-.++..+... .+...|.....+++.+ +|. .+.+|.-+|..+...|++++|...+++|+.++
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-LPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 444455555555544332 2345667777777664 666 78889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
| +..+|+.+|.++...|++++|+..|++|++++|..
T Consensus 451 p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 451 M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9 57899999999999999999999999999999974
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.7e-07 Score=74.81 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+|.+...++.+-.....+|+--+||+.....++..+. +.++|..++.+|+..|+|++|.-++++.+-+.|.++-.+-++
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 5666777888888888888888999999999999887 899999999999999999999999999999999999999999
Q ss_pred HHHHHhCC---CHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLG---MENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~---~~~~A~~~~~~al~l~P~~~ 249 (251)
|.+++-+| +++-|.++|.++++++|.+.
T Consensus 195 ae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 195 AEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 99988777 46779999999999999653
No 115
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.4e-08 Score=85.25 Aligned_cols=108 Identities=17% Similarity=0.046 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCh
Q 025537 139 WTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN---DMPQEALGDAMQAQVVSPDWP 215 (251)
Q Consensus 139 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~ 215 (251)
+.+-++.++.++..|+..|..+....|+..|.+++...|. ...+|.|++.++++. |+--.|+.||..|++++|...
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~-~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ 445 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD-AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ 445 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc-hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH
Confidence 3445677999999999999999999999999999999998 999999999999984 577899999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
++||+++.++..++++.+|+.+...+....|.
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 99999999999999999999998887777773
No 116
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=2.5e-08 Score=85.46 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=95.7
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
++.++.++||..|..|++++|.+.|..|+.-+.. -..+++|.|..+-.+|+.++|+..|-+.-.+=-+++..++.++.+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3567889999999999999999999999999866 789999999999999999999999999877777899999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|..+.+..+|+++|.++..+-|++
T Consensus 568 ye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCC
Confidence 999999999999999999998875
No 117
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=1.8e-07 Score=80.99 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=86.1
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
+...-.+..++..++-.+|+..+.++|...|. ++.++..-+..++..++++.|+..+++|+.+.|+..+.|+.++.+|.
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34445677788888999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHH
Q 025537 227 SLGMENDARETLKDG 241 (251)
Q Consensus 227 ~~~~~~~A~~~~~~a 241 (251)
.+|+|++|+..+.-+
T Consensus 280 ~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 280 QLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHhcC
Confidence 999999999877644
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.71 E-value=9.6e-08 Score=84.90 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---- 210 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 210 (251)
|.........|..|+.+|+|++|+..+.+|++. .|. -.....++|..|+.+++|.+|+..|++|+.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~-va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV-VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 344556667999999999999999999999988 454 4566677999999999999999999999986
Q ss_pred ----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 211 ----SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 211 ----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+|..+.++.++|.+|...|+|++|..++++|++|--+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999988644
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=7.3e-08 Score=74.52 Aligned_cols=69 Identities=25% Similarity=0.188 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+.+++++|..+...|++++|+..|++++.+.|+. ..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 67789999999999999999999999999988764 4789999999999999999999999999999975
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.7e-07 Score=73.60 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL 228 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 228 (251)
.+..|..+-..|+|++|+++|+..++-||. +..+|-..-.+...+|+.-+||+....-++.-+++.++|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 344455555556666666666666666655 5555555555555555555666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhhhh
Q 025537 229 GMENDARETLKDGTNLEAK 247 (251)
Q Consensus 229 ~~~~~A~~~~~~al~l~P~ 247 (251)
|+|+.|.-+|++++=+.|-
T Consensus 168 ~~f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPF 186 (289)
T ss_pred hHHHHHHHHHHHHHHcCCC
Confidence 6666666666666555554
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1e-07 Score=85.66 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
++-..+.|+..|..+.+.+++..|..+|..++.++|+ +.++|+|++.+|+++|+-.+|...+.+|++-+-++++.|-+.
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 3445779999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
-.+....|++++|+..|.+.+.+.-+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998876543
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.69 E-value=1.3e-07 Score=67.78 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+..++.+|..++..|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 3578899999999999999999999999999987 6799999999999999999999999999999875
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=8.8e-08 Score=64.61 Aligned_cols=66 Identities=24% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+++++|.++...|++++|+..+.++++..|++..+++.+|.++...|++++|+..|++++++.|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 578899999999999999999999999999999999999999999999999999999999998875
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.65 E-value=8.3e-08 Score=88.62 Aligned_cols=108 Identities=9% Similarity=0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTAL 218 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 218 (251)
+..++..+...++.+|-+|+|..+..++..++..... .-+..|+++|.+|..+|+|++|..+|.++++.+|++ .-.+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 3445666777777777777777777777777755421 134457777777777777777777777777777776 6777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.+|+.|...|+++.|..+|+++++..|++.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 7777777777777777777777777777754
No 125
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.3e-07 Score=78.07 Aligned_cols=106 Identities=12% Similarity=-0.036 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY 219 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 219 (251)
.....+-+.+.|..++..++|+-++..|.+|+... |+..+++|+|+|.+..-.|++.-|...|+-|+.-||++.+++.
T Consensus 354 G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 354 GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 34556777788888888888888888888888753 4446778888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 220 LQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
++|..-...|+.++|...+..|-.+.|.
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8888888888888888888888888775
No 126
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2e-07 Score=79.08 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 201 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 201 (251)
+...+.+..+|+.+...|+.++|+-.|..|+.+.|. ....|..+-.+|+..|++++|.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHH
Confidence 344567777777777777777777777777777776 6777777777777777766643
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=2.1e-06 Score=64.42 Aligned_cols=97 Identities=20% Similarity=0.085 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PT 216 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 216 (251)
...+...+......+..+++..+...+++.++-.|+ . ..+.+.+|.+++..|++++|+..+++++...|+. +.
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 345777788888888899999999999999999887 5 4677889999999999999999999999988765 56
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Q 025537 217 ALYLQAACLFSLGMENDARETLKD 240 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~ 240 (251)
+.+++|.++...|+|++|+..++.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 899999999999999999999865
No 128
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.62 E-value=7.4e-08 Score=53.40 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777653
No 129
>PRK11906 transcriptional regulator; Provisional
Probab=98.62 E-value=2.6e-07 Score=80.07 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=86.9
Q ss_pred HHHHHHhHHHhhc---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCC
Q 025537 148 NSKKHGDTAFRAK---DFSTAIDCYTQFI---DGGTMVSPTVYARRCLSYLMN---------DMPQEALGDAMQAQVVSP 212 (251)
Q Consensus 148 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p 212 (251)
.++.+|...+..+ ..+.|+.+|++|+ +++|. .+.+|..+|.|++.. ..-.+|++...+|++++|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 4466676665444 3567899999999 99998 999999999999875 134678999999999999
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 213 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.++.+++.+|.++...++++.|...|++|+.++||.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 999999999999999999999999999999999985
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.61 E-value=5.7e-07 Score=80.96 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=85.8
Q ss_pred HHHHHHHHHhHHHhhcC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhh--C
Q 025537 145 ETLNSKKHGDTAFRAKD---FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--------MPQEALGDAMQAQVV--S 211 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~ 211 (251)
+|-.++.+|..++..++ +.+|+.+|++|++++|+ ++.+|..++.+|.... +...+.....+++.+ +
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 46678888988876655 88999999999999999 9999999888886642 245666666776664 7
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|..+.+|.-+|..+...|++++|...|++|++++|+
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS 452 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 888899999999999999999999999999999995
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.60 E-value=3.7e-07 Score=81.24 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-------MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS---- 211 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 211 (251)
+..+..+.+.|..|.+.|+|++|..++++|+++-- ..-+..+.+.+.++..++++++|+.++.+++++-
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 45688999999999999999999999999997621 1145788999999999999999999999998862
Q ss_pred ----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 212 ----PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 212 ----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|.-++.+.++|.+|+.+|+|++|.+.|++|+.+.-+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 234788999999999999999999999999987643
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.60 E-value=4.7e-07 Score=83.78 Aligned_cols=108 Identities=9% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+..++.++..|..+..+|+|++|..+|.+++..+|+...-.++.+|+.|+..|+++.|+-.|++.++..|++.+...-+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34557889999999999999999999999999999983366788999999999999999999999999999999999999
Q ss_pred HHHHHhCC----CHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLG----MENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~----~~~~A~~~~~~al~l~P~~~ 249 (251)
|..|...+ ..+.|.....++++..|.+.
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 99999886 67899999999999988764
No 133
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.58 E-value=7.5e-08 Score=53.33 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537 204 AMQAQVVSPDWPTALYLQAACLFSLGMENDAR 235 (251)
Q Consensus 204 ~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 235 (251)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777777777777775
No 134
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=5.7e-07 Score=79.14 Aligned_cols=103 Identities=9% Similarity=-0.055 Sum_probs=84.4
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--HHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV--YARRCLSYLMNDMPQEALGDAMQAQVVSPDWP--TALYL 220 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 220 (251)
+.......|..+...|++++|+..++++++..|+ +... ..-+....+..++...++..++++++..|+++ ..+..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 5677888899999999999999999999999887 5532 12344445556788889999999999999999 88888
Q ss_pred HHHHHHhCCCHHHHHHHHH--HHHhhhhhc
Q 025537 221 QAACLFSLGMENDARETLK--DGTNLEAKK 248 (251)
Q Consensus 221 ~g~~~~~~~~~~~A~~~~~--~al~l~P~~ 248 (251)
+|.+++..|+|++|.++|+ .+++.+|+.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 9999999999999999999 577788865
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=7.1e-07 Score=83.97 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-------------------HHHHHHHHHHHhcCCHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-------------------TVYARRCLSYLMNDMPQEALG 202 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------~~~~~~a~~~~~~~~~~~A~~ 202 (251)
.|.....++..|..+++.+++.+|... .++...+. +. .+++.+|.||-++|++++|..
T Consensus 61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~ 137 (906)
T PRK14720 61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKG 137 (906)
T ss_pred CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH
Confidence 556677888888888888888888877 77777665 54 788889999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 203 DAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 203 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.++++++++|+++.+..++|..|... ++++|+..+.+|++..=+
T Consensus 138 ~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 138 VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 999999999999877544
No 136
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=1e-06 Score=72.86 Aligned_cols=97 Identities=19% Similarity=0.008 Sum_probs=92.4
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM 230 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 230 (251)
+.|..|++.|-+.+|...++.+++..| .++.|..++.+|.+.+++..|+..+.+.++.-|-++..+...+.++..+++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 779999999999999999999999997 578888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 025537 231 ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 231 ~~~A~~~~~~al~l~P~~~ 249 (251)
+++|.+.|+.+++++|.|-
T Consensus 306 ~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINV 324 (478)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 9999999999999999874
No 137
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.51 E-value=2.4e-07 Score=51.20 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+++|+.+|.+++.+|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777764
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.3e-06 Score=71.69 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=80.7
Q ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC---HHHHHH
Q 025537 160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM---ENDARE 236 (251)
Q Consensus 160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~---~~~A~~ 236 (251)
.+.+.-+.-.+.-+..+|+ +..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.... ..+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3467777888889999998 999999999999999999999999999999999999999999999876654 578999
Q ss_pred HHHHHHhhhhhcc
Q 025537 237 TLKDGTNLEAKKN 249 (251)
Q Consensus 237 ~~~~al~l~P~~~ 249 (251)
.|++++++||.+.
T Consensus 215 ll~~al~~D~~~i 227 (287)
T COG4235 215 LLRQALALDPANI 227 (287)
T ss_pred HHHHHHhcCCccH
Confidence 9999999999874
No 139
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.50 E-value=3.5e-07 Score=53.90 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
.+|..+|.+|..+|++++|+..|+++++.+|+++.+|+.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578889999999999999999999999999999999988875
No 140
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.9e-06 Score=71.13 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=65.9
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
++...-+.|-+.++|++||+.-++..++.+.. -+.+|+-+|..++.-.+++.|+..+.+|+..+|+++.+-..+|.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 44455566666666777777666666665541 24466666666666666777777777777777777777677777
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
++...|+|..|++.++.+++-||+
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChH
Confidence 777777777777777777766665
No 141
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=1.6e-06 Score=76.05 Aligned_cols=84 Identities=19% Similarity=0.050 Sum_probs=55.5
Q ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537 160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239 (251)
Q Consensus 160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 239 (251)
+++++++...++.++..|+ ++..+..+|..++..|+|.+|.++|+++++..|++.. +..++.++..+|+.++|..+|+
T Consensus 308 ~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555566665 6666667777777777777777777777777776543 4456777777777777777777
Q ss_pred HHHhhh
Q 025537 240 DGTNLE 245 (251)
Q Consensus 240 ~al~l~ 245 (251)
+++.+.
T Consensus 386 ~~l~~~ 391 (398)
T PRK10747 386 DGLMLT 391 (398)
T ss_pred HHHhhh
Confidence 776654
No 142
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.47 E-value=6.7e-06 Score=72.41 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=86.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
....+.-.|..+...|+++.|..+|.++.+..|+....+...++.+++..|+++.|+..+++.++..|+++.++..++.+
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567788888999999999999999999888872234666679999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhh
Q 025537 225 LFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l 244 (251)
+...|++++|...+.+.++.
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999988865
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.47 E-value=3.1e-07 Score=50.84 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
+.+|+++|.+|+.+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888864
No 144
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.2e-06 Score=70.77 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=94.1
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-PTALYLQAA 223 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~ 223 (251)
=|+.+-+.+..+....+++.|...+.+|++.+|+ +..+-..+|.+++..|+|+.|++.++.+++.||++ +...-.+..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3566778899999999999999999999999998 98999999999999999999999999999999998 677888899
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
||..+|+.++.+..+.++.+..++
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCC
Confidence 999999999999999999987765
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.46 E-value=1.7e-06 Score=77.33 Aligned_cols=104 Identities=15% Similarity=0.025 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+..-+.+...-...|...+|+.|..+|.+|....| ...+|+.-+.....++..++|+..++.|++..|++++.|..+|
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 33445666667777888899999999999988876 5788888888888999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 223 ACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+++..+++.+.|...|..+++..|+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCC
Confidence 99999999999999999999999975
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=1.7e-06 Score=81.45 Aligned_cols=102 Identities=9% Similarity=-0.110 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--------
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------- 215 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------- 215 (251)
.....+...+..+...+++++|+...+.+++..|+ ...+|+..|.++++.+++.+|... .++.+-+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 34566677777888888888888888888888887 888888888888888877766555 5555555444
Q ss_pred -----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 216 -----------TALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 216 -----------~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+++.+|.||-.+|++++|...|+++|+++|+|
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n 149 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN 149 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence 888888888888888888888888888888876
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=4e-07 Score=61.61 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
+...+...|..+|+.|+|++|+..+++ ++.+|. +....+.+|.|++++|+|++|+..+++|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 888887 7788888899999999999999999875
No 148
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.1e-06 Score=77.16 Aligned_cols=106 Identities=9% Similarity=-0.001 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.|..+..|+.-|.-|+--|++.+|..+|.+|..+||. .+.+|...|.+|.-.|+.++|+..|..|-++-|....-.+.+
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl 386 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL 386 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence 4566888999999999999999999999999999998 999999999999999999999999999999999888888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|.=|..+++++-|...|.+|+.+.|++
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~D 413 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSD 413 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999975
No 149
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.44 E-value=1.7e-07 Score=51.89 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.4
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025537 168 CYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 201 (251)
Q Consensus 168 ~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 201 (251)
+|++||+++|+ ++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 48999999999 9999999999999999999986
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=3.8e-06 Score=73.66 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT-VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
...+...+....+.|+++.|..+|.++.+.+|+ +.. .....+.++...|+++.|+..++++++.+|+++.++..++.+
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 334555566669999999999999999999987 543 334558999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhh
Q 025537 225 LFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~ 245 (251)
|...|++++|+..+.+..+..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcC
Confidence 999999999998777776544
No 151
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=3.8e-06 Score=65.01 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL 220 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 220 (251)
..+..|.++|.++++.+.++.||..-++||++.|. +-.++..||.+|-++..|++|+++|++.++++|....+.-.
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 45678889999999999999999999999999998 88899999999999999999999999999999998765433
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-06 Score=73.32 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
..+..++-.|..+|..++|+.|+.+-.++|+.+|. +..+|...|..+..+|+.++|+-.|+.|+.+.|..-..|-.+-.
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34667788889999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+|...|.+.||...-..+++.-|++-
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999998888764
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=1.3e-06 Score=77.74 Aligned_cols=106 Identities=12% Similarity=-0.096 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.++..+.+-.+|..+...|+-++|..+...+++.|+. +..+|.-+|.++...++|++||..|..|+.++|+|-..|..+
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5566788889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+....++++|+.....-.+.+++.|..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 999999999999999999999998875
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.37 E-value=1.5e-05 Score=64.19 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=89.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYL 220 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 220 (251)
+..++++|...++.|+|++|+..|+......|.. ...+...++.++++.++|+.|+..+++-+++.|+++ .++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 6789999999999999999999999999888751 356888899999999999999999999999999874 67888
Q ss_pred HHHHHHhCC--------CHHHHHHHHHHHHhhhhhcc
Q 025537 221 QAACLFSLG--------MENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 221 ~g~~~~~~~--------~~~~A~~~~~~al~l~P~~~ 249 (251)
+|.+++..= ...+|...|+..+.--|+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 899876543 24788999999999999853
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.37 E-value=1e-05 Score=62.01 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=91.9
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQ 221 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~ 221 (251)
..+.....|+.+...|+|.+|...|.+++.- ..+ ++..+..++.+.+.++++..|....++..+.+|. .|+.+...
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3567788999999999999999999999974 334 7888999999999999999999999999999996 48888999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
|.+|..+|.+.+|...|+.++...|.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 99999999999999999999988775
No 156
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=2.3e-06 Score=76.37 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
++...--|--.|..+-..++|++||.+|+.|+..+|+ |..+|..++....++++|+.....-.+.+++.|.+-..|+..
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 3334446667888888999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 222 AACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
+.+++.+|++..|....+...+..
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998877665543
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.32 E-value=1.6e-06 Score=47.74 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
+.+|+.+|.+++.+|+|++|+..|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888875
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.32 E-value=4.8e-06 Score=69.61 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhHHHhh-cCHHHHHHHHHHHHccCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 025537 144 QETLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGT-----MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---- 213 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 213 (251)
..+..+.+.|..+... |++++|+.+|.+|+++-. .....++.+.|.++..+|+|++|+..|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 3477888999999888 999999999999998722 112457888999999999999999999998875322
Q ss_pred --Ch-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 214 --WP-TALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 214 --~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+ ..++..+.|+...|++..|...|++....+|...
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 12 3567889999999999999999999999999754
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=5.3e-06 Score=68.37 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=62.8
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 181 PTVYARRCLSY-LMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 181 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
...++..|..+ +..|+|++|+..|++.++..|++ +.++|.+|.+|+..|+|++|+..|+++++..|++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 46778888876 56799999999999999999998 58999999999999999999999999999999754
No 160
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.30 E-value=5.7e-06 Score=77.07 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=89.5
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHh-
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYLQAACLFS- 227 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~- 227 (251)
...+....+.++|++|++.-.++++.+|+ |..++..+|.++..+++ .++|-+.|..|.+++|++.-||-.+|..|..
T Consensus 6 LK~Ak~al~nk~YeealEqskkvLk~dpd-NYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~ 84 (1238)
T KOG1127|consen 6 LKSAKDALRNKEYEEALEQSKKVLKEDPD-NYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY 84 (1238)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence 44566678889999999999999999999 99999999999999998 9999999999999999999999999999887
Q ss_pred --CCCHHHHHHHHHHHHhhhhhcc
Q 025537 228 --LGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 228 --~~~~~~A~~~~~~al~l~P~~~ 249 (251)
...++++-..|.+++-+.|+.+
T Consensus 85 ~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 85 NDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred chhhhhhHhHHHHHHHHHhhhhhh
Confidence 4568999999999988887644
No 161
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.28 E-value=7e-05 Score=56.06 Aligned_cols=98 Identities=18% Similarity=0.023 Sum_probs=76.7
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------------------SPTVYARRCLSYLMNDMPQEALGDAM 205 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 205 (251)
+.+...|......++.+.++..+.+++.+-... ...+...++..+...|++++|+..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777777889999999999999773210 12355667788889999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 206 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 206 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
+++.++|.+-.+|..+-.+|...|++.+|+..|+++.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988543
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.27 E-value=2.4e-06 Score=79.47 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=86.7
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
.+-.+|-.+...+++.+|+..|+.|++.+|. +..+|..+|.+|...|+|..|+..|.+|..++|.+.-+.|..+.....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 4556888999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 025537 228 LGMENDARETLKDGTNL 244 (251)
Q Consensus 228 ~~~~~~A~~~~~~al~l 244 (251)
+|+|.+|+..+...+.-
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999988877654
No 163
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.26 E-value=5.4e-06 Score=63.19 Aligned_cols=82 Identities=10% Similarity=-0.057 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhc----------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-----------HH
Q 025537 140 TSQMQETLNSKKHGDTAFRAK----------DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-----------PQ 198 (251)
Q Consensus 140 ~~~~~~a~~~~~~g~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-----------~~ 198 (251)
..+|.+++.+.+-|.++.... -+++|+..|++||.++|+ ...+++++|.+|..++. |+
T Consensus 19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 335666777777777775543 457899999999999998 99999999999998654 78
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHH
Q 025537 199 EALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 199 ~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+|..+|++|+..+|++.-....+.
T Consensus 98 kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 98 KATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHH
Confidence 899999999999999876544443
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=7.7e-06 Score=59.09 Aligned_cols=67 Identities=16% Similarity=0.007 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.+++++|.++-.+|+.++|+..|++|+...++. ..++..+|.++..+|++++|+..+++++.-.|+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 478899999999999999999999999975543 6799999999999999999999999999988873
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.24 E-value=1.7e-05 Score=58.52 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 177 TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 177 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
|+..+..+++.|...++.|+|.+|+..++....-.|.. ..+.+.+|.+|+..++|++|+..+++-++|+|++.+
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44467888999999999999999999999999887754 688999999999999999999999999999999764
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=1.1e-05 Score=65.89 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH---HHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL---YLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
.+..++..|..++..|+|++|+..|++++...|..+.+. +.+|.+|+.+++|++|+..|++.++++|++.+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 677788899999999999999999999999999986655 99999999999999999999999999999764
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=7.4e-06 Score=68.45 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=76.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CC--
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-----TMVSPTVYARRCLSYLMN-DMPQEALGDAMQAQVVSP--DW-- 214 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~-- 214 (251)
.+...+..+...+++.++++|+.+|++|+++- |..-+.++.++|.+|... |++++|+..|++|+.+.. +.
T Consensus 73 ~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 34444445555566679999999999999762 222357889999999998 999999999999999732 12
Q ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 215 --PTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
...+...|.++..+|+|++|+..|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 466788999999999999999999998764
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.21 E-value=1.2e-05 Score=63.82 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 177 TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 177 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|+..+..++..|..++..|+|.+|+..|++.+...|.. +.+.+.+|.+++..|+|++|+..|++.++..|++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 33367889999999999999999999999999998875 68999999999999999999999999999999865
No 169
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=2.9e-06 Score=66.53 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=69.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 175 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 175 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.|.+.+..++.||..|-.+|-+.-|..||.+++.+.|+-+..+..+|.-+...|+|+.|.+.|...+++||.++
T Consensus 59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 344457788999999999999999999999999999999999999999999999999999999999999999864
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.20 E-value=9.8e-06 Score=61.14 Aligned_cols=70 Identities=10% Similarity=-0.192 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.-...+..|.-++..|++++|...|.-...++|.+++.|+.+|.++..+++|++|+..|..|..+++++-
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 5567788899999999999999999999999999999999999999999999999999999999988764
No 171
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.19 E-value=3.8e-06 Score=46.28 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788888888888888888888888888884
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.19 E-value=1.5e-05 Score=66.70 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH-HHHHHHHH
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME-NDARETLK 239 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-~~A~~~~~ 239 (251)
++.+|...|+..-+..+. ++..++.++.|++.+|+|++|...+.+|+..+|+++.++.+++.+...+|+. +.+...+.
T Consensus 182 ~~~~A~y~f~El~~~~~~-t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGS-TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 699999999997777666 8889999999999999999999999999999999999999999999999998 56667777
Q ss_pred HHHhhhhhc
Q 025537 240 DGTNLEAKK 248 (251)
Q Consensus 240 ~al~l~P~~ 248 (251)
+....+|++
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 777778764
No 173
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=3.3e-05 Score=69.51 Aligned_cols=96 Identities=14% Similarity=-0.022 Sum_probs=75.8
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
..++-.+..+-..|++++|+.+.++||+..|. ..++|+..|.++.+.|++.+|...++.|-.+|+.+--.-..-+..+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35567777777788888888888888888887 88888888888888888888888888888888877777677777788
Q ss_pred hCCCHHHHHHHHHHHHh
Q 025537 227 SLGMENDARETLKDGTN 243 (251)
Q Consensus 227 ~~~~~~~A~~~~~~al~ 243 (251)
..|++++|.+.+..-.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTR 290 (517)
T ss_pred HCCCHHHHHHHHHhhcC
Confidence 88888888877665543
No 174
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.12 E-value=8.8e-06 Score=58.77 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
-|.+...-|+.+.|++.|.++|.+-|..+.+|.+++.++...|+.++|+.++.+++++.-..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 367777899999999999999999999999999999999999999999999999999865443
No 175
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.3e-05 Score=67.67 Aligned_cols=104 Identities=14% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH----------------------------------HHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT----------------------------------VYARRCL 189 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~~~a~ 189 (251)
..++.+.+.++.|-...+..+||++|.++..+-|. ++. ..--+|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 34666666777776666777777777766666554 443 3334555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 190 SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 190 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.|+...-+++||.+|++|--+.|+..+.....+.|+...|+|..|...|+...+..|++
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 66666777889999999999999999988899999999999999999999988888875
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=4.1e-05 Score=64.28 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=90.8
Q ss_pred ccccccccchHHHHHHHHhcCCCCccchhhhhhhhhhHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH
Q 025537 103 LGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT 182 (251)
Q Consensus 103 ~~~a~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 182 (251)
..+..++.|+|+.-..|+-....+ .+.+.+.+.| .|-.+|..|+|++|+..|+.+...+.. ++.
T Consensus 29 Ledfls~rDytGAislLefk~~~~---~EEE~~~~lW------------ia~C~fhLgdY~~Al~~Y~~~~~~~~~-~~e 92 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD---REEEDSLQLW------------IAHCYFHLGDYEEALNVYTFLMNKDDA-PAE 92 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc---hhhhHHHHHH------------HHHHHHhhccHHHHHHHHHHHhccCCC-Ccc
Confidence 444556667777666665443211 2222233333 355689999999999999999987654 889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--------------hCC------------CChHHHHHHHHHHHhCCCHHHHHH
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQV--------------VSP------------DWPTALYLQAACLFSLGMENDARE 236 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p------------~~~~~~~~~g~~~~~~~~~~~A~~ 236 (251)
++.|+|.|++-+|.|.+|.....+|-+ ++. +..+-...++.++++.-+|.+|+.
T Consensus 93 l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 93 LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999877666521 211 112234566777788888999999
Q ss_pred HHHHHHhhhhhc
Q 025537 237 TLKDGTNLEAKK 248 (251)
Q Consensus 237 ~~~~al~l~P~~ 248 (251)
.|++.|.-+|+.
T Consensus 173 vYkrvL~dn~ey 184 (557)
T KOG3785|consen 173 VYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHhcChhh
Confidence 999999888874
No 177
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=3e-05 Score=70.63 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=93.6
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
..+...|..+.+.++-++|..+..+|-..+|- .+..|+.+|.++...|++.+|.+.|.-|+.++|+++....-+|.++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34556677777788888999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHH--HHHHHHhhhhhcc
Q 025537 227 SLGMENDARE--TLKDGTNLEAKKN 249 (251)
Q Consensus 227 ~~~~~~~A~~--~~~~al~l~P~~~ 249 (251)
..|+..-|.. .+..++++||.+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCH
Confidence 9999988888 9999999999864
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.07 E-value=1.7e-05 Score=71.30 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+++.+|+.|-.+|++++|+.++++||...|..++.|+.+|.+|-..|++++|..+++.|-++|+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 558899999999999999999999999999999999999999999999999999999999999875
No 179
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.07 E-value=8.1e-06 Score=47.96 Aligned_cols=42 Identities=7% Similarity=-0.108 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL 189 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 189 (251)
..+...|..+...|++++|+..|+++++.+|+ ++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 45678899999999999999999999999999 9999998875
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.06 E-value=4.9e-05 Score=68.36 Aligned_cols=102 Identities=12% Similarity=-0.075 Sum_probs=80.9
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+...++...-.++.++|+.+++++|+..|+ ...+|..+|+++-++++.+.|...|...++.-|+.+..|..++..-
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 335556666666677888888888888888887 8888888888888888888888888888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhc
Q 025537 226 FSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
...|+.-.|...++++.--||++
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCc
Confidence 88888888888888888777765
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.06 E-value=4.6e-06 Score=69.54 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 185 ARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 185 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
-.+|.-|+++|.|++||.+|.+++..+|.++-.|.+++.+|+.+..|..|..+...|+.||-.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 357899999999999999999999999999999999999999999999999999999998854
No 182
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.00 E-value=0.0005 Score=48.82 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CC
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGG---TMV--------SPTVYARRCLSYLMNDMPQEALGDAMQAQVV-------SP 212 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~---p~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p 212 (251)
..|...+..|-|++|...+.+|++.. |.+ ++.++-.++.++..+|+|++++....+||.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 45666778899999999999999763 211 2456777899999999999999988888874 44
Q ss_pred C----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 213 D----WPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 213 ~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+ |..+-|.+|.++..+|+.++|+..|+.+-++-.+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4 4666789999999999999999999999876543
No 183
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.00 E-value=7.9e-05 Score=62.43 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=78.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY--LMND--MPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~--~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+...-....+++.++++.|...+...-+.+.+ ....+++.++ +..| .+.+|.-.|+......|..+..+..+
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344455677889999999999999999888854 3344455444 3445 69999999999888878899999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.++..+|+|++|...+.++++.+|++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 9999999999999999999999999763
No 184
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=6.7e-05 Score=66.59 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
+.+...++.+--.+.+.++|++|+....+-.... . +...++..++|++++++.++|+..++ ..++....+...+|
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-V-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRA 117 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-h-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHH
Confidence 4567788888889999999999995544433322 1 34455889999999999999999999 67888888999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 223 ACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
.+++.+|+|++|...|+..++-+-
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999876543
No 185
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.93 E-value=1.9e-05 Score=43.43 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
.+|+.+|.+|..+|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567888888888888888888888888888854
No 186
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.8e-06 Score=68.30 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=91.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-C--CC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-G--TM---------------VSPTVYARRCLSYLMNDMPQEALGDAMQ 206 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~--p~---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 206 (251)
.++..++.|+..|++++|+.|...|.++++. + |. .-...+.|.+.+-++++.+..|+..+..
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 3667788999999999999999999998753 1 10 0123567889999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 207 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 207 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+++.++...++||+++.++..+.++++|+++++.+....|++.
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 9999999999999999999999999999999999999999753
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.92 E-value=6.5e-06 Score=70.20 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=58.6
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC--ChH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----SPD--WPT 216 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~ 216 (251)
.+-+.||.|+-.|+|++||.+-..-+++... ..-.++.|+|.||..+|+|+.|++.|++++.+ ... .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5556667777777777777666555544211 01246667777777777777777777664332 222 234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 217 ALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
.-|.+|..|..+.+|+.|+.++.+-|.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666655554
No 188
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00032 Score=57.70 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=86.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---------------------
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDA--------------------- 204 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~--------------------- 204 (251)
.+.....+......|++.+|...|..++..+|. +..+...++.||...|+++.|...+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445567788889999999999999999999998 8999999999999999997653332
Q ss_pred -------------HHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 205 -------------MQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 205 -------------~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+.+..+|+++.+-+.+|..|...|++++|.+.+-..++.|-..+
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 223446899999999999999999999999999988887765443
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.0002 Score=62.28 Aligned_cols=88 Identities=22% Similarity=0.152 Sum_probs=80.0
Q ss_pred hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 025537 158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET 237 (251)
Q Consensus 158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~ 237 (251)
..++++.|+..+++..+.+|. +..-++.+++..++..+|+...++++..+|.+...+...+..+...++++.|+..
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 357899999999999988875 3445789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcc
Q 025537 238 LKDGTNLEAKKN 249 (251)
Q Consensus 238 ~~~al~l~P~~~ 249 (251)
.+++.++.|++-
T Consensus 257 Ak~av~lsP~~f 268 (395)
T PF09295_consen 257 AKKAVELSPSEF 268 (395)
T ss_pred HHHHHHhCchhH
Confidence 999999999853
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=4.8e-05 Score=63.90 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=73.9
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR 235 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 235 (251)
+..+++|..|+.+++-.+..+..+....-.-+|.|++.+|+|++|+..|..+...+.-..+.+.+++-+++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 45678999999999999887754344555557999999999999999999999988788999999999999999999999
Q ss_pred HHHHHH
Q 025537 236 ETLKDG 241 (251)
Q Consensus 236 ~~~~~a 241 (251)
..-.+|
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 876655
No 191
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.85 E-value=0.00042 Score=53.79 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=66.6
Q ss_pred HHHhhcCHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHhCCCH
Q 025537 155 TAFRAKDFSTAIDCYTQFIDGGT--MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD-WPTALYLQAACLFSLGME 231 (251)
Q Consensus 155 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 231 (251)
.++..|++++|+..|.+++..+| ......+..++..+...+++..|+..+.+++...+. ....+..++..+...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56777777777777777777665 124555666666666777777777777777777777 577777777777777777
Q ss_pred HHHHHHHHHHHhhhhh
Q 025537 232 NDARETLKDGTNLEAK 247 (251)
Q Consensus 232 ~~A~~~~~~al~l~P~ 247 (251)
++|...+..++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 219 EEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 7777777777777664
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.82 E-value=0.00034 Score=54.33 Aligned_cols=102 Identities=22% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+...+..+...+++++|+..+.+++...+......+.+++.++...+++..|+..+..++...|.....++.++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 34444555555666677777777777777765412566677777777777777777777777777777666666666666
Q ss_pred HhCCCHHHHHHHHHHHHhhhhh
Q 025537 226 FSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~ 247 (251)
...+.+++|...+.++++.+|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 247 LELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc
Confidence 6666677777777777766663
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00012 Score=62.77 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=83.8
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------C
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG----GT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP------D 213 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~ 213 (251)
.-.++-+.||.+.-.|+|+.|+++|.+++.+ .. ...+..-+.+|.+|.-+++|++||.+..+-+.+.. .
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457889999999999999999999886644 32 12345567899999999999999999998776532 3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 214 WPTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
...+++.+|.+|..+|..+.|+...++.+++.-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998887643
No 194
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.80 E-value=2.5e-05 Score=69.30 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=89.4
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM 230 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 230 (251)
..|.-+-..|+...|+.++..|+-..|.+...-..++|.+.++-|....|-....+++.+....|-.+|.+|.++..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 34444456899999999999999999975667788999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 025537 231 ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 231 ~~~A~~~~~~al~l~P~~~ 249 (251)
.+.|+++|++|+.++|++-
T Consensus 692 i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCP 710 (886)
T ss_pred hHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999863
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00017 Score=58.60 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.++-|.-+++.|+|..|...|..-++..|+. +.++|.+|.+++.+|+|++|...|..+.+-.|++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 7888999999999999999999999999986 78999999999999999999999999999888754
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00054 Score=61.06 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=82.3
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccC------------------------------CCCCHHHHHHHHHHHHhcCCH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGG------------------------------TMVSPTVYARRCLSYLMNDMP 197 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------------------p~~~~~~~~~~a~~~~~~~~~ 197 (251)
.+--+|..+++.|+|++|+..|+..++-+ |..+.+.++|.|.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 44567889999999999999998875332 112456789999999999999
Q ss_pred HHHHHHHHHHHhh--------CCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 198 QEALGDAMQAQVV--------SPD-------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 198 ~~A~~~~~~al~~--------~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.+|++..++|+++ +-+ -......++.++..+|+.++|...|...|+.+|-++
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 9999999999543 111 134567889999999999999999999999998654
No 197
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.69 E-value=6.1e-05 Score=59.58 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 191 YLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 191 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
..+.++.+.|.+.|.+|+.+-|.|...|+++|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34566777777788888888888888888888877888888888888888888887754
No 198
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.69 E-value=9.8e-05 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 217 ALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+|.++|.+|..+|+|++|+.+|+++|.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4566777777777777777777775554443
No 199
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.67 E-value=0.00012 Score=67.18 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMN--DMPQEALGDAMQAQVVSPDWPTA 217 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~ 217 (251)
...+..++..|+.+|++++|..|.-.|..++.+-|.. .+..+.+.+.||+++ |+|..++.+|.-|+...|...++
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 3447788999999999999999999999999998842 456788888888875 68999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 218 LYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++.++.+|..++.++-|.++..-....+|++
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999988888888876
No 200
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0003 Score=58.00 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=78.2
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHH
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDAR 235 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 235 (251)
+.+..+|..||++.+--.+..|. +-..+..+|.||+...+|..|...|++.-.+-|...+..+.-+..+++.+.|.+|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 46678999999999999999998 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 025537 236 ETLKDG 241 (251)
Q Consensus 236 ~~~~~a 241 (251)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 876544
No 201
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0001 Score=60.69 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC------
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----SPD------ 213 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~------ 213 (251)
.+|....+.|...|+.|+|++|+..|+.|++..-. ++-+-+|.+.|+++.|++..|+...+..++. .|.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 35778889999999999999999999999999866 8888889999999999999999999887762 221
Q ss_pred ----------C---------hHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537 214 ----------W---------PTALYLQAACLFSLGMENDARETLK 239 (251)
Q Consensus 214 ----------~---------~~~~~~~g~~~~~~~~~~~A~~~~~ 239 (251)
+ .+++...+.++++.|+++.|.+.+.
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1 3567778889999999999987654
No 202
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.65 E-value=0.00053 Score=58.33 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=62.0
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 166 IDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 166 ~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
+...++.+...|+ ++.++..+|..+++.+.|.+|-.+++.|++..| ....|..+|.++.++|+..+|.+.+++++.+
T Consensus 314 ~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 314 IKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3344444455565 778889999999999999999999999999887 4556788899999999999999999998844
No 203
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.64 E-value=3.1e-05 Score=75.46 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=55.1
Q ss_pred CEEEeecCCC-CCchh---------hhHHHHcCCccccccccccCC--CCHHHHHHHHHHHhcccCcCCCCCCCHHHHHH
Q 025537 1 MLLDLLSGKH-IPPSH---------ALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 1 vlLEl~tgr~-~~~~~---------~~~~~~~~~~~~~~d~~l~~~--~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
||+||+||+. .+... ++..........++|+.+... .+.+++..+.+++.+|++.+|..||+|.+|++
T Consensus 867 vl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~ 946 (968)
T PLN00113 867 ILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLK 946 (968)
T ss_pred HHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHH
Confidence 4679999998 65322 112222233556788887543 34567788899999999999999999999999
Q ss_pred HHHhhhhh
Q 025537 69 SLMSLQKE 76 (251)
Q Consensus 69 ~L~~~~~~ 76 (251)
.|+.+.+.
T Consensus 947 ~L~~~~~~ 954 (968)
T PLN00113 947 TLESASRS 954 (968)
T ss_pred HHHHhhcc
Confidence 99877544
No 204
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.63 E-value=0.00045 Score=65.05 Aligned_cols=94 Identities=9% Similarity=-0.079 Sum_probs=80.3
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
.|.-....+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+++.|++...|..++.+|..
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP--TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 4555677888899999999988763 3444 567799999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 025537 228 LGMENDARETLKDGTNL 244 (251)
Q Consensus 228 ~~~~~~A~~~~~~al~l 244 (251)
.|++++|.+.++...+.
T Consensus 541 ~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 541 SGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999876654
No 205
>PLN03077 Protein ECB2; Provisional
Probab=97.62 E-value=0.0009 Score=64.54 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=82.0
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...|.-....+.+.|++++|.+.+++ +...| +...|..+-.++...|+.+.+...++++++++|+++..|..++.+|
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~p--d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINK-MPITP--DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 34667778888999999999999987 45666 5778888877888889999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhh
Q 025537 226 FSLGMENDARETLKDGTNL 244 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l 244 (251)
...|++++|.+..+...+.
T Consensus 702 a~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 702 ADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHCCChHHHHHHHHHHHHc
Confidence 9999999999988766543
No 206
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.62 E-value=4.6e-05 Score=66.22 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
++..|..+-+++.++++.++|..|+....+||+++|. ...+|..+|.+.+.++++.+|+.++++...+.|+.+++.-..
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 4455777778899999999999999999999999998 999999999999999999999999999999999999987776
Q ss_pred HHHHHh
Q 025537 222 AACLFS 227 (251)
Q Consensus 222 g~~~~~ 227 (251)
-.|-..
T Consensus 113 ~Ec~~~ 118 (476)
T KOG0376|consen 113 DECNKI 118 (476)
T ss_pred HHHHHH
Confidence 666433
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=6.4e-05 Score=59.80 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
-|..++.-++|..|+..|.+||.++|..+..|-+++.+|+++.+++.+..+.+++++++||.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence 36677778899999999999999999999999999999999999999999999999999985
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00041 Score=56.20 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHH----HccCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQF----IDGGT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA 217 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a----l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 217 (251)
+++..-....|...++.||.+.|-.+|+.. =.++. ..+-.+..|.+.+|.-.++|..|...+.+++..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 345666778899999999999999998843 22331 1145677888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 218 LYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
-.+.|.|+..+|+..+|++..+.+++..|.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999996
No 209
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.58 E-value=9.5e-05 Score=40.08 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 217 ALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
++|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777766665
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.55 E-value=0.00066 Score=60.78 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--H
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT--A 217 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~ 217 (251)
|+.+-.+...|..+..+|+.++|++.|++++..... .....++.++-+++.+.+|++|..++.+.++.+. |.+ .
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHH
Confidence 455778889999999999999999999999964422 2346788999999999999999999999998664 444 3
Q ss_pred HHHHHHHHHhCCCH-------HHHHHHHHHHHhhhhh
Q 025537 218 LYLQAACLFSLGME-------NDARETLKDGTNLEAK 247 (251)
Q Consensus 218 ~~~~g~~~~~~~~~-------~~A~~~~~~al~l~P~ 247 (251)
+|..|.|+..+|+. ++|...|.++-.+-.+
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 45669999999999 8888888887766543
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.55 E-value=0.00049 Score=41.93 Aligned_cols=43 Identities=12% Similarity=-0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
+.++.+|.+++++|+|.+|..+++.+++++|+|..+.-....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567788889999999999999999999999988876554443
No 212
>PRK10941 hypothetical protein; Provisional
Probab=97.53 E-value=0.00067 Score=56.05 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=60.4
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
..+.+.-..+.+.++|+.|+.+.+..+.++|+ ++.-+--||.+|.++|.+..|+.|++.-++..|+.+.+-.-+..+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 35556666777888888888888888888887 7777777888888888888888888888888888887766555443
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0019 Score=50.03 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=80.0
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH-HHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS--PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT-ALYLQA 222 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g 222 (251)
.......+..++..+++++|+..+++++....+++ +.+-.++|.+.+++|.+++|+....... ++.|.. ..-.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence 45667888899999999999999999997654433 3455778999999999999999777632 333433 345679
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 223 ACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.++...|+-++|...|+++++.+++
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999999999999999999998653
No 214
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.51 E-value=0.00014 Score=38.44 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
.+|+.+|.++..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34556666666666666666666666666554
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0017 Score=54.24 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL 228 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 228 (251)
....+...+.+..+.|...|.+|++..+. ...+|...|...+. .++.+.|...|+.+++..|.++..|......+..+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 34445555566688888999999865544 67888888888666 45666699999999999999999998888888999
Q ss_pred CCHHHHHHHHHHHHhhhhh
Q 025537 229 GMENDARETLKDGTNLEAK 247 (251)
Q Consensus 229 ~~~~~A~~~~~~al~l~P~ 247 (251)
|+.+.|...|++++..-|.
T Consensus 84 ~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 84 NDINNARALFERAISSLPK 102 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSC
T ss_pred CcHHHHHHHHHHHHHhcCc
Confidence 9999999999998876554
No 216
>PRK10941 hypothetical protein; Provisional
Probab=97.45 E-value=0.0021 Score=53.14 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
....|+=.+|++.++++.|+.+.+..+.+.|+++.-+--+|.+|.++|.+..|..+++..++..|+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 4567888899999999999999999999999999999999999999999999999999999999975
No 217
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.45 E-value=0.00082 Score=57.75 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccC--------CCC----C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMV----S-----PTVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
.....|...|++++|..|+--|.-|+++. |.. + ..+--.+..||+++++.+-|+....+.|.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 33444555555566666655555555542 210 0 123356899999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537 211 SPDWPTALYLQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 211 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 242 (251)
+|.++--|.+.|.++..+.+|-+|...+.-+.
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776654
No 218
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.44 E-value=0.00077 Score=47.40 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHhHHHhhcCHHHHHHHHHHHHccCCCCC--HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCChHHH
Q 025537 152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVS--PTVYARRCLSYLMNDM-----------PQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 218 (251)
++..+|.+|++-+|++..+..+...+... ..++.--|.+++++.. .-.+++.|.++..+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678999999999999999998876522 1445555777765432 3458999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 219 YLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
|.+|.-+-....|+++..-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999877788899999888888865
No 219
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.40 E-value=0.00081 Score=55.68 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 142 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 142 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
...+|....+.+....+.|+.++|..+|..|+.++|+ ++.++...|...-..++.-+|-.+|-+|+.++|.+.+++.++
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4456666677777888999999999999999999999 999999999988888889999999999999999999999887
Q ss_pred HHH
Q 025537 222 AAC 224 (251)
Q Consensus 222 g~~ 224 (251)
+..
T Consensus 191 ~RT 193 (472)
T KOG3824|consen 191 ART 193 (472)
T ss_pred hcc
Confidence 654
No 220
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.37 E-value=0.0004 Score=42.32 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
+.+|.+|.+++.+|+|++|..+.+.+|+++|+|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4689999999999999999999999999999975
No 221
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.37 E-value=0.004 Score=60.98 Aligned_cols=88 Identities=18% Similarity=0.062 Sum_probs=37.1
Q ss_pred HhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhCCC
Q 025537 153 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACLFSLGM 230 (251)
Q Consensus 153 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~ 230 (251)
...+.+.|++++|...|.+..+.+...+...|+.+..+|.+.|++++|+..|.+..+. .|+ ...|..+..+|...|+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence 3344444455555554444444432223344444444444444444444444443332 232 2233333444444444
Q ss_pred HHHHHHHHHHH
Q 025537 231 ENDARETLKDG 241 (251)
Q Consensus 231 ~~~A~~~~~~a 241 (251)
+++|.+.|.+.
T Consensus 665 ~eeA~~l~~eM 675 (1060)
T PLN03218 665 LDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.0019 Score=48.26 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 209 (251)
...+...+..+...|++++|+..+.+++..+|. +-.+|..+-.+|..+|+..+|+..|.+...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677888899999999999999999999998 999999999999999999999999998743
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.31 E-value=0.00081 Score=56.85 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=81.8
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--------
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------- 214 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------- 214 (251)
.+.-.|+++...+.|+++++.|++|++.... ..-.++..+|..|-+++++++|+-+..+|.++-...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3445788899999999999999999987432 123578899999999999999999999998875432
Q ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 215 --PTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
..++|+++.++..+|+.-+|.++.+++.++.-
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 35679999999999999999999999987753
No 224
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.30 E-value=0.0022 Score=60.43 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-PDWPTALYLQAACL 225 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~ 225 (251)
..|......+.+.|++++|+..|.+..+..-..+...|..+..++.++|++++|...+...++.. +.+...+..+...|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 34555666666666666666666665443211134445555555555555555555544444432 22233333334444
Q ss_pred HhCCCHHHHHHHHH
Q 025537 226 FSLGMENDARETLK 239 (251)
Q Consensus 226 ~~~~~~~~A~~~~~ 239 (251)
.+.|++++|...|+
T Consensus 371 ~k~G~~~~A~~vf~ 384 (697)
T PLN03081 371 SKWGRMEDARNVFD 384 (697)
T ss_pred HHCCCHHHHHHHHH
Confidence 44444444444443
No 225
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.29 E-value=0.0045 Score=59.97 Aligned_cols=99 Identities=15% Similarity=-0.000 Sum_probs=80.5
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------PTA 217 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 217 (251)
.....|..++..|++++|...+.++++..|..+ ..++..+|.++...|++++|...+.+++...... ..+
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 334567788899999999999999998655322 2456788999999999999999999998764321 356
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 218 LYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 218 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
+..+|.+++..|++++|...+++++.+..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999998744
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.29 E-value=0.0024 Score=51.67 Aligned_cols=71 Identities=14% Similarity=-0.033 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
.+..|++-|...++-|+|.+|+..|+......|.. .++...++.++++.++|++|+..+++-+++.|++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 56788899999999999999999999999987765 688999999999999999999999999999998764
No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.29 E-value=0.00045 Score=36.30 Aligned_cols=32 Identities=22% Similarity=0.096 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD 213 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 213 (251)
.+|+++|.+++.+++++.|+..+.++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777777664
No 228
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.27 E-value=0.0061 Score=59.78 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=54.1
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV----VSPDWPTALYLQA 222 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~g 222 (251)
..|......|.+.|++++|+..|.+..+..-..+...|+.+..+|.+.|++++|...+.+... +.|+ ...|..+-
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI 586 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHH
Confidence 344455556666666666666666654433222455566666666666666666666665543 2343 34455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhh
Q 025537 223 ACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l 244 (251)
.+|.+.|++++|.+.|++..+.
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc
Confidence 5566666666666666555544
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.26 E-value=0.0006 Score=38.00 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQV 209 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 209 (251)
+|.++|.+|.++|+|++|++.|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666443
No 230
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.25 E-value=0.0019 Score=60.13 Aligned_cols=101 Identities=11% Similarity=-0.076 Sum_probs=73.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
.-+.--+|-.+++.|++++|..+++..-...++ +...+.-+-.||..++++++|...|++++..+|+ -+..+.+-.+|
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence 334456677788888888888666654444554 6677777888888888888888888888888888 77788888888
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhc
Q 025537 226 FSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
...+.|.+-.+.--+.-+.-|++
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 88888876655555555555553
No 231
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.25 E-value=0.00058 Score=36.85 Aligned_cols=32 Identities=19% Similarity=0.011 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
+++++|.++.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777763
No 232
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0092 Score=48.56 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=79.0
Q ss_pred HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537 145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL 220 (251)
Q Consensus 145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 220 (251)
+-..+.+.++.+.+ .+++.+|.-.|+..-+.-|. ++...+..+.|++.+|+|++|....+.|+..++++++++.+
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 34455566666543 45688999999997774444 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 025537 221 QAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 221 ~g~~~~~~~~~~~A~~~~~~al 242 (251)
+-.+-..+|.-.++..-+-.-+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 9999999999877766554433
No 233
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0036 Score=56.57 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA 222 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 222 (251)
.+.+.+...|+.++|..+++.|...+..-|.. .+...-+++.||+.+.+.+.|++++..|-+.+|.++-..+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 56789999999999999999999998775531 3556778999999999999999999999999999999888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhh
Q 025537 223 ACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~al~l 244 (251)
.+...-|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999988776543
No 234
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.20 E-value=0.0019 Score=44.14 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537 165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al 242 (251)
.+..+.++++.+|+ +..+.+.+|..++..|++++|++.+-.+++.+|++ ..+.-.+-.++..+|.-+.-...|++-|
T Consensus 7 ~~~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 46678888888988 88888999999999999999999999999988877 6666666777777777666666666543
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.18 E-value=0.0039 Score=60.40 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=59.8
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--------C
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--------W 214 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~ 214 (251)
.+...|..+...|++++|...+.+++..... ....++.++|.+++..|++++|...+.+++.+... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3455666666777777777777777654221 01234556677777777777777777776664211 1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
...+..+|.+++..|++++|...+.+++.+.
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 2234456666777777777777777766653
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0011 Score=58.04 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=80.3
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHH-HccCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQF-IDGGTM-------VSPTVYARRCLSYLMNDMPQEALGDAMQAQV------- 209 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------- 209 (251)
.+..+.-+.+.++..|+|.+|...+... |...|. ..-.+|+|+|.+++++|.|.-++-+|.+|++
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 4667888899999999999999887653 333332 0234679999999999999999999999996
Q ss_pred --hCC---------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 210 --VSP---------DWPTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 210 --~~p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
+.| ......|+.|..|...|+.-.|.++|.++....
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 122 346788999999999999999999999987643
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.15 E-value=0.0063 Score=41.59 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 200 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 200 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
.+..+++++..+|++..+.|.+|..+...|++++|++.+-..++.+|++.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 355667777777777777777777777777777777777777777776643
No 238
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0039 Score=50.15 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL 218 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 218 (251)
-+.+-...++..|+|-++++.-+..+...|. |..+|+.||.++...-+.++|..|+.++++++|.-..+-
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 5667788889999999999999999999999 999999999999999999999999999999999765543
No 239
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.008 Score=52.71 Aligned_cols=102 Identities=15% Similarity=0.022 Sum_probs=93.1
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+..-|.--..++++..|...|.+||..+-. +.++|..-+.+-++.+....|...+.+|+.+-|.-.+.||..-..-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555566677788999999999999999976 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhhhhc
Q 025537 226 FSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
-.+|+...|.+.|++=++..|+.
T Consensus 152 E~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcH
Confidence 99999999999999999999864
No 240
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0017 Score=54.27 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 176 GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 176 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
.|++.+.-|-.-|+-|++-++|..|+..|.++|+.+-. ++-.|.++|.|.+.+|+|..|+.+..+|+.++|.+.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 44445666667799999999999999999999997543 4678999999999999999999999999999998653
No 241
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.99 E-value=0.0021 Score=53.36 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=57.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
|.-..+.|+.++|...|..|+.++|++++++...|.....-++.-+|-++|-+||.++|.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 33445789999999999999999999999999999999999999999999999999999876
No 242
>PLN03077 Protein ECB2; Provisional
Probab=96.97 E-value=0.0074 Score=58.29 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=69.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---SPDWPTALYLQA 222 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g 222 (251)
...|......+.+.|+.++|+..|++.++.....+...|..+-.++.+.|.+++|...|+...+. .| +...|..+.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv 632 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVV 632 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence 44566777778888888888888888776432224566666777788888888888888887643 34 346777788
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 025537 223 ACLFSLGMENDARETLKDG 241 (251)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~a 241 (251)
.++...|++++|.+.+++.
T Consensus 633 ~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC
Confidence 8888888888888877763
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.022 Score=44.18 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=80.0
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
++..+.-+++..|..+++..|...++...+.+|. -.+......|.++..+|.+..|...|+.++...|+ +.+-.+.+.
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e 201 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAE 201 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 4677888899999999999999999999999884 14455556688888999999999999999999985 555667788
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 025537 224 CLFSLGMENDARETLKDG 241 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~a 241 (251)
.+..+|+.++|..-|...
T Consensus 202 ~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 202 MLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhcchhHHHHHHHHH
Confidence 899999998887766543
No 244
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.95 E-value=0.00019 Score=59.98 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=54.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhccC
Q 025537 193 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 250 (251)
Q Consensus 193 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 250 (251)
..|.++.||+.|..||.++|.....|-.++.++..+++...|+.++..+++++|+...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK 183 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence 3677999999999999999999999999999999999999999999999999998653
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.94 E-value=0.019 Score=44.55 Aligned_cols=97 Identities=10% Similarity=-0.043 Sum_probs=77.7
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Ch----HH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WP----TA 217 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~ 217 (251)
...+.++|..+.+.|+++.|++.|.++.+.... .-...+++...+.+..++|..+.....+|-.+-.. +. +.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 567889999999999999999999999887643 12457788888999999999999999998665322 22 33
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537 218 LYLQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 218 ~~~~g~~~~~~~~~~~A~~~~~~al 242 (251)
....|..+...++|.+|...|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 4556888899999999999887664
No 246
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.89 E-value=0.048 Score=46.74 Aligned_cols=95 Identities=17% Similarity=0.044 Sum_probs=68.2
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
...+.--+...-+.|+++.|-.+..++-+..++.+-..+..++......|++..|..-..++++..|.++...--.-.+|
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y 197 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 34555555666677777777777777777744435666777777777778888888888888888888888777777788
Q ss_pred HhCCCHHHHHHHHHH
Q 025537 226 FSLGMENDARETLKD 240 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~ 240 (251)
...|++.+......+
T Consensus 198 ~~~g~~~~ll~~l~~ 212 (400)
T COG3071 198 IRLGAWQALLAILPK 212 (400)
T ss_pred HHhccHHHHHHHHHH
Confidence 888877776655443
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0071 Score=50.87 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVS--PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY 219 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 219 (251)
|.+....+-.-.++|..|+...-...+.+.|-. +|+.- .-+....+.++...|-|.+|.+..++|++++|.+.++..
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 445556666666677777777777777776655 44411 222333566777778888888888888888888888888
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 025537 220 LQAACLFSLGMENDARETLK 239 (251)
Q Consensus 220 ~~g~~~~~~~~~~~A~~~~~ 239 (251)
-++.++...|++.++.+.-.
T Consensus 214 a~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHhcchhhhHHHHHH
Confidence 88888888888887776543
No 248
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.022 Score=46.38 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=81.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----DMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.+..-...+.+.+..+++-|.....+..+.+ +......+|.++.++ +++..|.-.|+..-+..|-.+......
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~ 213 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ 213 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH
Confidence 3344455666777788888888888888887 345666778777763 468999999999888777789999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+.|...+|+|++|...++.+|.-+|++
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999988875
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.75 E-value=0.016 Score=54.22 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=80.4
Q ss_pred HhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHH
Q 025537 157 FRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARE 236 (251)
Q Consensus 157 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 236 (251)
...++|.+|+...++.++..|+ ...+....|.++.++|+.++|....+..-...+++...+-.+-.+|..+|++++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3457999999999999999998 777888889999999999999965555555677888888999999999999999999
Q ss_pred HHHHHHhhhhhc
Q 025537 237 TLKDGTNLEAKK 248 (251)
Q Consensus 237 ~~~~al~l~P~~ 248 (251)
.|++++..+|+.
T Consensus 99 ~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 99 LYERANQKYPSE 110 (932)
T ss_pred HHHHHHhhCCcH
Confidence 999999999983
No 250
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.013 Score=47.71 Aligned_cols=101 Identities=9% Similarity=0.004 Sum_probs=84.7
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhCC--CChHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQ----VVSP--DWPTALYLQ 221 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p--~~~~~~~~~ 221 (251)
..+-..+.+.-.|+|.-.+..|.+.++.+|...+.+...++.+.++.|+.+.|-.+|+..- +++. .....+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445677788899999999999999999976688899999999999999999999999443 3333 245566778
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+.+|...++|.+|...|.++++.||++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCc
Confidence 888999999999999999999999975
No 251
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.0029 Score=55.55 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=70.6
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHc---------cCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFID---------GGTM--------VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
.+.+.|..+|+.|.|..++.+|.+|++ +.|. -...+.+|.|..|+..|++..|.+.|.+|+..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 457899999999999999999999995 1221 14578899999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 025537 211 SPDWPTALYLQAACLFSL 228 (251)
Q Consensus 211 ~p~~~~~~~~~g~~~~~~ 228 (251)
.-.+|..|.+++.|..+.
T Consensus 365 fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhcCcHHHHHHHHHHHHH
Confidence 999999999999997653
No 252
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.71 E-value=0.0031 Score=50.20 Aligned_cols=60 Identities=12% Similarity=-0.035 Sum_probs=55.6
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Q 025537 155 TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP 215 (251)
Q Consensus 155 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 215 (251)
..++.++.+.|.+.|.+|+++.|. ....|+.+|...-+.|+++.|...|.+.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 356789999999999999999998 999999999999999999999999999999999753
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.034 Score=44.86 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=48.5
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCChHHHHH
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----SPDWPTALYL 220 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 220 (251)
..+..+...++|++|-.++.+|++.... .-+.+|-.-+.....+..+.++...+++|..+ .|+-+..-..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 3333444456666666666666643321 01223333444444555666666666666554 2333333334
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 221 QAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 221 ~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
++.=....-+.++|++.|++++.+-.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44444455556666666666665543
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.64 E-value=0.057 Score=40.81 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
..+.+........++.+++...+...--+.|. .+.+-..-|..++..|+|.+|+..++.+..-.|.++-+--.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34556666667777888888888887778887 88887778888888888888888888888888888877777888888
Q ss_pred hCCCHH
Q 025537 227 SLGMEN 232 (251)
Q Consensus 227 ~~~~~~ 232 (251)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888865
No 255
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.60 E-value=0.023 Score=45.40 Aligned_cols=90 Identities=17% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHHhhcCHHHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhhCCC------Ch
Q 025537 155 TAFRAKDFSTAIDCYTQFIDG------GTMVSPTVYARRCLSYLMNDMP-------QEALGDAMQAQVVSPD------WP 215 (251)
Q Consensus 155 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p~------~~ 215 (251)
.+-....+++|+..|.-|+-. +|..-+.++..+|=+|..+|+. ..|+..|.+|+..... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 444566788888888777632 2222356677778888888874 4466666666654432 26
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
...|.+|...+.+|++++|+.+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999999999864
No 256
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.027 Score=45.13 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=76.3
Q ss_pred HHHHHHHHhHHHhh-cCHHHHHHHHHHHHccCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----
Q 025537 146 TLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGTMVSP-----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----- 214 (251)
Q Consensus 146 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 214 (251)
|..+...|..|-.. .++++||.+|++|-+.-..+.. ..+...+..-..+++|.+||..|++.....-++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 44555666666554 7899999999999875322122 345555666667899999999999988766555
Q ss_pred -hHH-HHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 215 -PTA-LYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 215 -~~~-~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
++- ++..|.|++-..+.-.+...+++..+++|.-.
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 333 45557777777999999999999999999754
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.015 Score=52.10 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=76.2
Q ss_pred hhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhCCCHHH
Q 025537 158 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----PTALYLQAACLFSLGMEND 233 (251)
Q Consensus 158 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~ 233 (251)
...+.+.|...+......-|+ ..-..+..|..+...|+.++|++.+++|+.....+ .-.+|.+|.++..+++|++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 355778899999999999998 88888999999999999999999999998755544 3457899999999999999
Q ss_pred HHHHHHHHHhhh
Q 025537 234 ARETLKDGTNLE 245 (251)
Q Consensus 234 A~~~~~~al~l~ 245 (251)
|..+|.+..+.+
T Consensus 324 A~~~f~~L~~~s 335 (468)
T PF10300_consen 324 AAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHhcc
Confidence 999999988754
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.025 Score=47.66 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=61.4
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---hHHHHHHHHH
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-SPDW---PTALYLQAAC 224 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~g~~ 224 (251)
.-..+..++..|++.+|...+++.++-.|. +..++..--.+++.+|+...-...+++.+-. +|+- .-.+-..+..
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 334455566667777777777777777666 5555555555566667666666666666665 4444 2223334555
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+...|.|++|.+..++++++||.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcc
Confidence 667777777777777777777653
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.025 Score=45.34 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=74.3
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-----CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC----
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPDW---- 214 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~---- 214 (251)
++..-+-.+...|++.+..+|+.+++++|++-.+. -+..+..+|.+|-. +.++++||..|++|-+.....
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 45555555666778889999999999999986530 12334566777764 588999999999998764432
Q ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 215 --PTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 215 --~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
-+.+...+..-..+++|.+|+..|++...-
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777788899999999999987654
No 260
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.02 Score=50.56 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=58.3
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Q 025537 165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM-ENDARETLKDGTN 243 (251)
Q Consensus 165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~ 243 (251)
-...|+.|+...+. +..+|.+...-..+-+.+.+--..|.+++...|++++.|..-|.-.+..+. ++.|.+.|.++|+
T Consensus 90 Iv~lyr~at~rf~~-D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNG-DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 34567777766665 677776655544455557777777777777777777777777776666665 7777777777777
Q ss_pred hhhhcc
Q 025537 244 LEAKKN 249 (251)
Q Consensus 244 l~P~~~ 249 (251)
.+|++.
T Consensus 169 ~npdsp 174 (568)
T KOG2396|consen 169 FNPDSP 174 (568)
T ss_pred cCCCCh
Confidence 777653
No 261
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=96.49 E-value=0.0013 Score=54.28 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=27.6
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+..+..+|++.+|..||+|.+|+++|..+
T Consensus 253 ~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 253 DEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred HHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 3577788899999999999999999999865
No 262
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.48 E-value=0.014 Score=42.54 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 160 KDFSTAIDCYTQFID-GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 160 ~~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
.+-.+.|.+++..++ -.|...-+..+.++..++++|+|+.++.+++..++..|+|..+.-..-.+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 456778999999986 566546678888999999999999999999999999999998866554443
No 263
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.045 Score=48.19 Aligned_cols=97 Identities=13% Similarity=-0.076 Sum_probs=80.1
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL 225 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 225 (251)
+..+..-+....++.+...|...+-.||-..|. ..++-.-...-.++++++.....|++-|+.+|.+..+|...|..-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK--~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK--DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 445566677777888899999999999999986 444444455566889999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhh
Q 025537 226 FSLGMENDARETLKDGTNL 244 (251)
Q Consensus 226 ~~~~~~~~A~~~~~~al~l 244 (251)
..+|+.+.|...|+-|+.-
T Consensus 482 ~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHhhhHHHHHHHHHHHhcC
Confidence 9999999999999988753
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.44 E-value=0.041 Score=45.93 Aligned_cols=100 Identities=11% Similarity=-0.068 Sum_probs=81.3
Q ss_pred HHHHHHhHHHh-hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 025537 148 NSKKHGDTAFR-AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYLQAA 223 (251)
Q Consensus 148 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~ 223 (251)
.|...|...+. .++.+.|...|+.+++..|. +..+|..-...+..+++.+.|...|++++..-|... ..|-....
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIE 115 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 34455666555 57777799999999999998 999999888889999999999999999999877654 67777788
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 224 CLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.-...|+.+...+.++++.++.|+.
T Consensus 116 fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 116 FESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 8888999999999999999998873
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.34 E-value=0.01 Score=33.67 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
.+++++|.+|..+|++++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666554
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.29 E-value=0.011 Score=33.49 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 215 PTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
..++.++|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999999874
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.27 E-value=0.02 Score=50.55 Aligned_cols=57 Identities=14% Similarity=-0.050 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537 185 ARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 185 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
..+|.|..++|+.++|++.+...++..|. +...++++-.++..++.|.++...+.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44577777777777777777777766654 4556777777777777777777666553
No 268
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.077 Score=47.81 Aligned_cols=96 Identities=18% Similarity=0.040 Sum_probs=81.9
Q ss_pred HHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhCCCChHHHHHH------HHH
Q 025537 152 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAM-QAQVVSPDWPTALYLQ------AAC 224 (251)
Q Consensus 152 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~~------g~~ 224 (251)
....+...++...|+-....++..+|. +..++.+++.+....|..-.++..+. -+....|++......+ |..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 151 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY 151 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH
Confidence 455566778888899999999999998 99999999999988887655555555 4999999998887777 999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 225 LFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 225 ~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+..+|+..++.....++..+.|++
T Consensus 152 ~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 152 LKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHhccHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999976
No 269
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.10 E-value=0.011 Score=33.19 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+.|..+|.+-...++|++|+.+|++||++.-+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888877543
No 270
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.05 E-value=0.022 Score=31.63 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHhhhhhc
Q 025537 216 TALYLQAACLFSLGMENDARET--LKDGTNLEAKK 248 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~l~P~~ 248 (251)
+.++.+|..++..|++++|+.. |+-+..++|+|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 44666666653
No 271
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.071 Score=43.75 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC 224 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 224 (251)
+.=..+...++++.|..+-.+.+.++|. ++.-+--+|.+|.++|-+.-|+++++..++.-|+.+.+-.-++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344566777888888888888888887 777777788888888888888888888888888877766555443
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.02 E-value=0.037 Score=47.15 Aligned_cols=99 Identities=11% Similarity=-0.047 Sum_probs=80.4
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS------ 211 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------ 211 (251)
+.+--.|..+-+.+||++|+.+..+|.++.... ...+.+.++.++..+|+.-.|.++|++|.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 345577888999999999999999998774210 13456778999999999999999999998763
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 212 PDWPTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 212 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
|-++....-+|.+|...|+.+.|..-|++|....
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3456667788999999999999999999987653
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.02 E-value=0.075 Score=45.43 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=70.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCC--------------------------------CCHHHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTM--------------------------------VSPTVYARRCLSYL 192 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------------------------------~~~~~~~~~a~~~~ 192 (251)
+....+.+..+...|+..+|+..+...+.. ... ..+.++..+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 455667777778888888888887777761 000 01234555555555
Q ss_pred hc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHhhhhh
Q 025537 193 MN------DMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME-----------------NDARETLKDGTNLEAK 247 (251)
Q Consensus 193 ~~------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-----------------~~A~~~~~~al~l~P~ 247 (251)
.+ +.+++++..|.+|+.++|++.++|+..|..+..+-+. ..|+..|-+|+.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 55 6777888888899999998888888888877554222 3488888888888776
No 274
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.029 Score=46.00 Aligned_cols=67 Identities=16% Similarity=-0.009 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
....|+=.+++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|++++...++..|+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 4456667788899999999999999999999999999999999999999999999999999998875
No 275
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.96 E-value=0.058 Score=37.06 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCC---C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMV---S-----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 212 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~---~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 212 (251)
..+.|+|.+|++.+.+.++..... . ..+..++|.++...|++++|+..+++|+++-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456778888877777766553210 1 24556667777777777777777777766543
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.95 E-value=0.089 Score=34.64 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
+....++|..++...+.++|+..++++++..++ ... ++..+..+|...|+|.+++.+...=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999998765 544 4455677888899999988877665544
No 277
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=95.94 E-value=0.0015 Score=54.06 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=27.2
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+..+...|++.+|+.||+|.+++..|+.+
T Consensus 251 ~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 251 QEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred HHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 3466788899999999999999999999865
No 278
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.85 E-value=0.082 Score=51.07 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=79.3
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMN----D---MPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
.-.+++...+.|++|+..|++.-...|. +..++.+..|.+.+.. | .+.+|+..|++ +.-.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence 3456778889999999999999888885 2456778888887753 3 47788888877 44567778889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 222 AACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
|.+|..+|+|+|-+++|..|++.-|+.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988874
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.17 Score=45.01 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHh
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-SPDWPTALYLQAACLFS 227 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~ 227 (251)
...|..+-+.|+.++||+.|...++..|. .+..++.|+..+++.++.|.++.....+==++ -|+.+...|..+..-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 45788888999999999999999988774 36679999999999999999998887773322 25666666766654322
Q ss_pred -CCC---------------HHHHHHHHHHHHhhhhh
Q 025537 228 -LGM---------------ENDARETLKDGTNLEAK 247 (251)
Q Consensus 228 -~~~---------------~~~A~~~~~~al~l~P~ 247 (251)
.++ -..|.+.+.+|.+.||.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 222 23477889999999985
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.80 E-value=0.18 Score=43.65 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 216 TALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+.+-.++.+....|++++|.+++++++++.|.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33445566677788888899998888888775
No 281
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=95.71 E-value=0.0055 Score=51.00 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=28.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|..||++.+|.+.|..+...
T Consensus 253 ~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~ 285 (291)
T cd05094 253 EVYDIMLGCWQREPQQRLNIKEIYKILHALGKA 285 (291)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence 356788899999999999999999999988654
No 282
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.71 E-value=0.02 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVS 211 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 211 (251)
.+|..+|.+.+..++|.+|+.+|.+|+++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788999999999999999999998864
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.67 E-value=0.26 Score=42.62 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCL--SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
+++..+...+....-.|+|+.|...|+.-+ -+|. ......||. .-..+|..+.|+.+...|-..-|.-++++--.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPE--tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At 194 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPE--TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT 194 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChH--HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence 345666777888888999999999998755 4553 233333333 33468999999999999999999999999998
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 025537 222 AACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~ 243 (251)
-......|+++.|++..+...+
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHH
Confidence 8899999999999998876543
No 284
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.65 E-value=0.29 Score=48.59 Aligned_cols=101 Identities=7% Similarity=-0.082 Sum_probs=80.0
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
....|...|..++++.+-++|...+.+|++.-|.. ...+....|+.-++.|+.+++...|+-.+.-+|...+.|.-...
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 45677788888888888888888888888887752 34566667888888888888888888888888888888888888
Q ss_pred HHHhCCCHHHHHHHHHHHHhhh
Q 025537 224 CLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 224 ~~~~~~~~~~A~~~~~~al~l~ 245 (251)
.-...|+.+.+...|++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 8888888888888888887653
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.60 E-value=0.073 Score=36.57 Aligned_cols=60 Identities=20% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 189 LSYLMNDMPQEALGDAMQAQVVSPD---------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 189 ~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.-..+.|+|.+|++.+.+....... ...+...+|.++...|++++|+..+++++++-.+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3456899999998888887765332 24678889999999999999999999999987654
No 286
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.13 Score=42.04 Aligned_cols=86 Identities=10% Similarity=0.010 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQ-EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 239 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 239 (251)
+..+-+++++..++-+|+ |..+|..|-.+.-.+|++. .-++.++.++..+.++-.+|-.+-.+....+.|+.-+....
T Consensus 93 dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555555555 5555555555555555555 55555566666555555566555555555555666555555
Q ss_pred HHHhhhhh
Q 025537 240 DGTNLEAK 247 (251)
Q Consensus 240 ~al~l~P~ 247 (251)
+.|+.|-.
T Consensus 172 ~Lle~Di~ 179 (318)
T KOG0530|consen 172 ELLEEDIR 179 (318)
T ss_pred HHHHHhhh
Confidence 55555443
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.49 E-value=0.14 Score=37.46 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-hCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhcc
Q 025537 180 SPTVYARRCLSYLMND---MPQEALGDAMQAQV-VSPD-WPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 249 (251)
.....+++|-++.... +.++.|..++..++ -.|. .-...|.++..++.+++|+.|+.+.+.+|+.+|+|.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4666778888877655 45778888888886 4443 467889999999999999999999999999999985
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.41 E-value=0.42 Score=40.77 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C-C----
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMNDMPQEALGDAMQAQVV--S-P---- 212 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p---- 212 (251)
...+..+...+..+.+.|+|+.|...+.++...++.. .+.+.+..+......|+..+|+...+..+.- . +
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 3456788899999999999999999999999876321 4567778899999999999999998888771 1 0
Q ss_pred ---------------------------CChHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhhhhcc
Q 025537 213 ---------------------------DWPTALYLQAACLFSL------GMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 213 ---------------------------~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~l~P~~~ 249 (251)
...++++.+|.-...+ +.++++...|.++++++|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1246677778777777 889999999999999999764
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.37 E-value=0.32 Score=40.43 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 209 (251)
...+.+.+..+...|+++.++..+++.+..+|. +-.+|..+-.+|++.|+...|+..|++.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445555566666666666666666666666665 555666666666666666666665555433
No 290
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=95.31 E-value=0.0023 Score=53.23 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=27.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
.+..+...|++.+|..||++.+++..|..+.
T Consensus 257 ~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 257 EMYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred HHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 4667788999999999999999999998764
No 291
>PHA02988 hypothetical protein; Provisional
Probab=95.28 E-value=0.0076 Score=50.16 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=26.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
+..+..+|++.+|..||++.++++.|+.+.
T Consensus 251 l~~li~~cl~~dp~~Rps~~ell~~l~~~~ 280 (283)
T PHA02988 251 IKCIVEACTSHDSIKRPNIKEILYNLSLYK 280 (283)
T ss_pred HHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 556677999999999999999999998764
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.28 E-value=0.41 Score=35.75 Aligned_cols=82 Identities=15% Similarity=-0.079 Sum_probs=66.6
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG 229 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 229 (251)
.+.........+++++...+...--+-|+ .+.+-.--|..++..|+|.+|+..++...+-.+..+-+--.++.|++.+|
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444445578888888888887778887 88888888888999999999999999988888888888888888888888
Q ss_pred CHH
Q 025537 230 MEN 232 (251)
Q Consensus 230 ~~~ 232 (251)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 875
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.44 Score=38.65 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=43.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----- 215 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 215 (251)
|.....++......-+.++|+.+|++++.+-.. ...+.+...+.++.++..|.+|-..+.+-..+.-...
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 333344444444445555555555555543211 0123444455555555555555555555433332221
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 216 -TALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 216 -~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
+++...-.+|.-.++|..|..+|+.+-++
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 11222222333344555565555555443
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.15 E-value=0.04 Score=49.69 Aligned_cols=100 Identities=8% Similarity=-0.060 Sum_probs=85.7
Q ss_pred HHHHHhHH-HhhcCHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 025537 149 SKKHGDTA-FRAKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF 226 (251)
Q Consensus 149 ~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 226 (251)
+-..+..| -.+|+..+|+.+|..|+-..|..+ ..++..+|.++.+.|...+|--....|+.-.|..+.-+|-+|.++.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 33444444 458999999999999998876422 3577889999999999999988889999999998888999999999
Q ss_pred hCCCHHHHHHHHHHHHhhhhhc
Q 025537 227 SLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 227 ~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++|.|.....+|..+.+.+|.-
T Consensus 295 ml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHhhhhhhhhhhhhhhccCcch
Confidence 9999999999999999999853
No 295
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=95.09 E-value=0.0091 Score=48.80 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=26.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+.++..+|+..+|..||++.+|++.|..+
T Consensus 236 ~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 236 KLRELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred HHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 355677799999999999999999999865
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.97 E-value=0.043 Score=27.92 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Q 025537 216 TALYLQAACLFSLGMENDARETLK 239 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~ 239 (251)
.+++.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677777777777777776654
No 297
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=94.87 E-value=0.017 Score=47.22 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=25.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|+..+|..||+|.+|.+.+..+
T Consensus 236 ~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 236 ELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 355667799999999999999999998764
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.83 E-value=0.67 Score=38.52 Aligned_cols=80 Identities=6% Similarity=-0.027 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537 162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
|..=+....++++.. ...++..++..+...|+++.+++.+++.+..+|.+-.+|..+-.+|+..|+...|+..|++.
T Consensus 137 f~~WV~~~R~~l~e~---~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 137 FDEWVLEQRRALEEL---FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 666666666666554 56788889999999999999999999999999999999999999999999999999999987
Q ss_pred Hhh
Q 025537 242 TNL 244 (251)
Q Consensus 242 l~l 244 (251)
-++
T Consensus 214 ~~~ 216 (280)
T COG3629 214 KKT 216 (280)
T ss_pred HHH
Confidence 663
No 299
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.77 E-value=0.45 Score=41.23 Aligned_cols=102 Identities=11% Similarity=-0.058 Sum_probs=75.5
Q ss_pred HHHHHHHhHHHhhcCHHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCChHHH
Q 025537 147 LNSKKHGDTAFRAKDFSTAIDCYTQFIDG----GTMVSPTVYARRCLSYLM---NDMPQEALGDAMQ-AQVVSPDWPTAL 218 (251)
Q Consensus 147 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~ 218 (251)
....+.-..|-.-++|+.=+.+.+..=.+ -+. ...+-+..|.++.+ .|+.++|+..+.. ...-.+.+++.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~-~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN-QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc-chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 34444455566677888888887764444 222 55667778888888 9999999999999 455566789999
Q ss_pred HHHHHHHHh---------CCCHHHHHHHHHHHHhhhhhcc
Q 025537 219 YLQAACLFS---------LGMENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 219 ~~~g~~~~~---------~~~~~~A~~~~~~al~l~P~~~ 249 (251)
-..|.+|-. ....++|+.+|.+|.+++|+.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 888988743 2347899999999999998754
No 300
>smart00750 KIND kinase non-catalytic C-lobe domain. It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features
Probab=94.75 E-value=0.015 Score=44.42 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|+..+|..||++.+++..+..+
T Consensus 140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~ 169 (176)
T smart00750 140 SFADFMRVCASRLPQRREAANHYLAHCRAL 169 (176)
T ss_pred hHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 467788899999999999999999987654
No 301
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.68 E-value=0.46 Score=47.26 Aligned_cols=99 Identities=12% Similarity=-0.026 Sum_probs=72.0
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHH
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAACLF 226 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~ 226 (251)
|..+...|-+-+++++|.++|+..++..-+ ....|...+..+++..+-+.|-....+|++--|. +.+..-.-|..-+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 344555666667777777777777776644 6677777777777777777777777777777776 6677677777777
Q ss_pred hCCCHHHHHHHHHHHHhhhhhc
Q 025537 227 SLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 227 ~~~~~~~A~~~~~~al~l~P~~ 248 (251)
+.|+.+.+...|+-.+.-.|+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccc
Confidence 7777777777777777777764
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.68 E-value=0.92 Score=37.80 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=75.5
Q ss_pred HHHHHHHHHhHHHh----hcCHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhhCC
Q 025537 145 ETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMN----D---MPQEALGDAMQAQVVSP 212 (251)
Q Consensus 145 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~-~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p 212 (251)
.+...+..|..++. ..++.+|..+|.+|.+..-. . ..+..+++.+|..- + +...|+..+.+|-...
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 35567778888877 55999999999999998621 2 23377788887764 1 2347999999988877
Q ss_pred CChHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhhh
Q 025537 213 DWPTALYLQAACLFS----LGMENDARETLKDGTNLEA 246 (251)
Q Consensus 213 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~P 246 (251)
++.+.+.+|.+|.. ..++.+|..+|.++-+...
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 89999999988754 4488999999999987653
No 303
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=94.65 E-value=0.0033 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
+.++..+|++.+|.+||+|.+|++.|..
T Consensus 227 l~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 227 MYDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred HHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 4567779999999999999999999874
No 304
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.63 E-value=0.15 Score=42.17 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 165 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 165 A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
|..+|.+|+.+.|+ +...|+.+|.++...|+.=.|+-+|-+++-..--++.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~-~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS-NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT-BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC-CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999998 999999999999999999999999999998776788899998888877
No 305
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=94.61 E-value=0.016 Score=47.46 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.4
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
+..+..+|++.+|+.||+|.+|..++.
T Consensus 242 l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 242 VTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred HHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 455667999999999999999998874
No 306
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.49 E-value=0.31 Score=42.20 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=77.6
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------C-CCh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-------P-DWP 215 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p-~~~ 215 (251)
-..+.+.|..|...|+++.|+.+|.++-+..... ....|.|.-.+-..+|+|.....+..+|...- + -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3467789999999999999999999988887531 23577888888888999999999999887651 1 135
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537 216 TALYLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
++....|.+.+.+++|+.|.++|-.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67777899999999999999988755
No 307
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.47 E-value=0.17 Score=28.09 Aligned_cols=32 Identities=6% Similarity=-0.112 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 025537 182 TVYARRCLSYLMNDMPQEALGD--AMQAQVVSPD 213 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p~ 213 (251)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456667777777777777777 3366666654
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.46 E-value=1.2 Score=37.18 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=75.9
Q ss_pred HHHHHHHHhHHHhhc-CHHHHHHHHHHHHcc----CCC---------CCHHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAK-DFSTAIDCYTQFIDG----GTM---------VSPTVYARRCLSYLMNDMPQ---EALGDAMQAQ 208 (251)
Q Consensus 146 a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~---------~~~~~~~~~a~~~~~~~~~~---~A~~~~~~al 208 (251)
+..+++-|...++++ +|+.|+..+++|.++ .+. ....++..++.+|+..+.++ +|+...+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 678899999999999 999999999999987 221 01346777899999988764 4555555555
Q ss_pred hhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 209 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 209 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
.-.|+.+..++..-.++...++.+++.+.+.+.+.-
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 667888888866666666688888888888887754
No 309
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.25 E-value=0.55 Score=40.06 Aligned_cols=107 Identities=6% Similarity=-0.146 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhc------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 140 TSQMQETLNSKKHGDTAFRAK------------DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 140 ~~~~~~a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
..+|.+.+.+.+....--..- -.+.-+..|++||+.+|+ +..++..+-.+..+..+-++...-++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346666776666654432221 145678899999999998 9988888888888888999999999999
Q ss_pred HhhCCCChHHHHHHHHHH---HhCCCHHHHHHHHHHHHhhhhh
Q 025537 208 QVVSPDWPTALYLQAACL---FSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 208 l~~~p~~~~~~~~~g~~~---~~~~~~~~A~~~~~~al~l~P~ 247 (251)
+..+|+++..|...-... +..-.+.+....|.+||+.-..
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 999999988886553332 2234688999999999976543
No 310
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.21 E-value=0.064 Score=44.83 Aligned_cols=77 Identities=3% Similarity=0.027 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 025537 143 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYAR-RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL 220 (251)
Q Consensus 143 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 220 (251)
+.+...|.+-++-..+.|-|.+--..|.+++...|. |.++|.. -+.-+...++++.+...+.++++++|++|..|+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344566666666677777888888888888888887 8888876 4455566788888888888888888888877653
No 311
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.13 E-value=0.086 Score=46.04 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537 155 TAFRAKDFSTAIDCYTQFIDGGTM--------VSPTVYARRCLSYLMNDMPQEALGDAMQAQV 209 (251)
Q Consensus 155 ~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 209 (251)
.+.-.|||..|+...+. |+++.. -....++..|-+|+.+++|.+|+..|...+-
T Consensus 131 vh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666655544 333211 0223445555555555566555555555544
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.98 E-value=0.27 Score=40.79 Aligned_cols=60 Identities=22% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 025537 183 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 242 (251)
+++..+..|...|.+.+|++.+++++.++|-+-..+..+-.++..+|+--.|+.+|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455568889999999999999999999999999999999999999999888988887653
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.87 E-value=0.81 Score=42.10 Aligned_cols=92 Identities=18% Similarity=0.095 Sum_probs=74.7
Q ss_pred HHHHHhHHHhh----c-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChHHHHH
Q 025537 149 SKKHGDTAFRA----K-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDWPTALYL 220 (251)
Q Consensus 149 ~~~~g~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 220 (251)
....|..|.+. . ++..|+.+|.++-++. ++.+-+.+|.+|..-. ++..|..+|..|... .+..+.++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 34566677663 2 7899999999999887 6677888899998765 578999999998775 48999999
Q ss_pred HHHHHHhC----CCHHHHHHHHHHHHhhh
Q 025537 221 QAACLFSL----GMENDARETLKDGTNLE 245 (251)
Q Consensus 221 ~g~~~~~~----~~~~~A~~~~~~al~l~ 245 (251)
+|.+|..- .+...|..+|+++-+.+
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99988643 47899999999998877
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.79 E-value=0.7 Score=43.79 Aligned_cols=96 Identities=13% Similarity=-0.042 Sum_probs=75.4
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHH----------ccCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFI----------DGGTM---------VSPTVYARRCLSYLMNDMPQEALGDAMQAQ 208 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 208 (251)
.|++.+..+-..++.+.|+++|+++= .-+|. .+..+|.-.|...-..|+.+.|+.+|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 67788888888899999999998752 22332 145677777887888999999999999874
Q ss_pred h---------------------hCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537 209 V---------------------VSPDWPTALYLQAACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 209 ~---------------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 243 (251)
. -...+-.+-|.+|..|...|++.+|+..|.+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3 2345667889999999999999999999887754
No 315
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.65 E-value=0.55 Score=41.40 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ 206 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 206 (251)
.....+.-+|..|+|.++.-+-....+.+| ++.+|--+|.|.+..++|.+|..++..
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 444555556666777777766666666666 466666677777777777777666554
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.61 E-value=1.5 Score=37.39 Aligned_cols=65 Identities=5% Similarity=-0.172 Sum_probs=42.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhC
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM---NDMPQEALGDAMQAQVVS 211 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~ 211 (251)
..-+...-....+..+-++....+++++..+|+ +..+|...-..... .-.+......|.+++..-
T Consensus 65 ~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 65 ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 333333333444555777788889999999998 88888654332222 235778888888887743
No 317
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.8 Score=37.56 Aligned_cols=92 Identities=14% Similarity=-0.051 Sum_probs=78.3
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHH-H
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN-D 233 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~-~ 233 (251)
+++...-..|+.+-..+|.++|. +.++|..|-.+...++ +..+-++.....++-+|++-..|..+-.+...+|++. .
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 34456667899999999999998 9999999988888776 5688899999999999999999999999999999887 7
Q ss_pred HHHHHHHHHhhhhhc
Q 025537 234 ARETLKDGTNLEAKK 248 (251)
Q Consensus 234 A~~~~~~al~l~P~~ 248 (251)
-++..+.+|..+.+|
T Consensus 132 ELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKN 146 (318)
T ss_pred hHHHHHHHHhccccc
Confidence 777888888776654
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.37 E-value=1.4 Score=31.65 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=44.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHH-------ccCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFI-------DGGTMVSPT----VYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
+-.+--+...+...|+|++++..-.+++ +++.+ ... +-++++.++-.+|+.++|+..|+.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4444556666778889988776666665 55544 443 4578999999999999999999998663
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=3.2 Score=32.55 Aligned_cols=97 Identities=16% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHH
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTAL 218 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 218 (251)
+.+...++........+.. +.+....+-+..+|.... -+-..++..+...+++++|+...+.++...-+. .-+-
T Consensus 51 ~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~ 129 (207)
T COG2976 51 QEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence 3455555666556555555 555555665555544122 233557888999999999999999999765443 4566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 025537 219 YLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
.|+|.++..+|.+|+|+..+...
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcc
Confidence 89999999999999999987643
No 320
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.14 E-value=1.9 Score=37.47 Aligned_cols=100 Identities=15% Similarity=0.002 Sum_probs=76.6
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCC----ChHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-TVYARRCLSYLMNDMPQEALGDAMQAQVV-SPD----WPTALYLQ 221 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~----~~~~~~~~ 221 (251)
.+......+.++|.|..|.++-.-.+.+||..++ .+.+-+-...++.++|+--+..++..... ..+ -|..-|..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3445566678899999999999999999997343 33444455556778888888888876552 112 34677899
Q ss_pred HHHHHhCCCH---------------HHHHHHHHHHHhhhhh
Q 025537 222 AACLFSLGME---------------NDARETLKDGTNLEAK 247 (251)
Q Consensus 222 g~~~~~~~~~---------------~~A~~~~~~al~l~P~ 247 (251)
+.+++.+++- +.|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9999999999 9999999999998884
No 321
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=93.13 E-value=0.021 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+..+|++.+|..||+|.+++..
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 228 PFKEFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHh
Confidence 45677789999999999999999874
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.11 E-value=1.3 Score=40.72 Aligned_cols=98 Identities=17% Similarity=0.034 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhHHHh-----hcCHHHHHHHHHHHHc----cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHh
Q 025537 144 QETLNSKKHGDTAFR-----AKDFSTAIDCYTQFID----GGTMVSPTVYARRCLSYLMND-----MPQEALGDAMQAQV 209 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~-----~~~~~~A~~~~~~al~----~~p~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~ 209 (251)
..+......|..++. .+|++.|+.+|..+.+ ..-...+.+.+.+|.+|++.. ++..|+..+.+|-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 345555566666654 4689999999999987 111114567888999998843 67889999999888
Q ss_pred hCCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Q 025537 210 VSPDWPTALYLQAACLFSLG---MENDARETLKDGTN 243 (251)
Q Consensus 210 ~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~ 243 (251)
+. ++.+.|.+|.++..-. ++..|.++|..|..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 76 7889999999988766 57899999988864
No 323
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=92.97 E-value=0.065 Score=43.93 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred cccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 26 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 26 ~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
..+.++.+...++. . +..+...|+ .+|+.||++.+|++.|
T Consensus 227 ~~~~~~~~~~~~~~-~---~~~l~~~c~-~~P~~Rp~~~~i~~~l 266 (268)
T cd05086 227 VKLFKPQLELPYSE-R---WYEVLQFCW-LSPEKRATAEEVHRLL 266 (268)
T ss_pred cccCCCccCCCCcH-H---HHHHHHHHh-hCcccCCCHHHHHHHh
Confidence 34556665444443 2 233445688 5699999999999887
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.93 E-value=1.5 Score=34.57 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHhCCCHHHHH
Q 025537 163 STAIDCYTQFIDGGTM-VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD----WPTALYLQAACLFSLGMENDAR 235 (251)
Q Consensus 163 ~~A~~~~~~al~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~ 235 (251)
++|...|-+ ++..|. +.+++.+.+|..|. ..+.++|+..+.+++++.+. +++.+..++.+++.+|+++.|-
T Consensus 123 ~~A~~~fL~-~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQ-LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHH-HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 444444444 233332 14556666665443 55667777777777776443 3677777777777777777663
No 325
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.92 Score=39.44 Aligned_cols=89 Identities=11% Similarity=-0.071 Sum_probs=68.2
Q ss_pred hcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC----HH
Q 025537 159 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--MPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM----EN 232 (251)
Q Consensus 159 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----~~ 232 (251)
..-+++-+.+...+++.+|+ ...+|+.|.-++.+.+ +|..=+..|+++++.||.+..+|..+-.+...... ..
T Consensus 88 ~~~ld~eL~~~~~~L~~npk-sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPK-SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHhhHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 33567778888999999998 9999999999998776 37899999999999999998888776665544433 34
Q ss_pred HHHHHHHHHHhhhhhc
Q 025537 233 DARETLKDGTNLEAKK 248 (251)
Q Consensus 233 ~A~~~~~~al~l~P~~ 248 (251)
+=++...++|.-++.|
T Consensus 167 ~El~ftt~~I~~nfSN 182 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSN 182 (421)
T ss_pred hHHHHHHHHHhccchh
Confidence 5556666666655543
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.89 E-value=0.88 Score=36.39 Aligned_cols=78 Identities=12% Similarity=-0.080 Sum_probs=55.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-HHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-TALY 219 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~ 219 (251)
|-.+...|+....+.=+..|+..|.+|++.... ....+.+.+|..+.++|++++|+..|.+++...-... ....
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 444445555555555578899999999976532 1356778899999999999999999999988654333 3455
Q ss_pred HHHH
Q 025537 220 LQAA 223 (251)
Q Consensus 220 ~~g~ 223 (251)
.+|.
T Consensus 205 ~~AR 208 (214)
T PF09986_consen 205 DMAR 208 (214)
T ss_pred HHHH
Confidence 5544
No 327
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=92.73 E-value=0.1 Score=43.04 Aligned_cols=30 Identities=17% Similarity=0.514 Sum_probs=26.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|..||++.+++..|+.+
T Consensus 254 ~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~ 283 (284)
T cd05081 254 EIYAIMKECWNNDPSQRPSFSELALQVEAI 283 (284)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence 467788899999999999999999999765
No 328
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=92.63 E-value=0.12 Score=42.16 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+.++..+|++.+|..||+|.+|++.|..+
T Consensus 238 ~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 238 AVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 467888899999999999999999998754
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.59 E-value=1.5 Score=28.96 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH---HHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL---QAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
....|.=++...+.++|+....+|++..++.+..+-- +..+|...|+|.+++++--+-+++.-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778889999999999999999887765544 456789999999999988777766544
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.59 E-value=0.46 Score=41.87 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537 188 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240 (251)
Q Consensus 188 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 240 (251)
|.-++..|+|.++..+..-..++.| .+.+|-.+|.+++...+|++|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4445679999999999999999999 999999999999999999999998764
No 331
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.52 E-value=3.2 Score=36.30 Aligned_cols=100 Identities=16% Similarity=0.040 Sum_probs=67.7
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCC---------
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVSPTVYARRCLSYL--MNDMPQEALGDAMQAQVVSPD--------- 213 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~--------- 213 (251)
+.....++..+|+.++|..|...++..+.. .+......+..++.+|. ..-+|++|.+.+++.+...-.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~ 210 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLK 210 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 456678888999999999999999998885 44312345666655554 577889999998876642100
Q ss_pred --------------------C-h--HHHHHH------HHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 214 --------------------W-P--TALYLQ------AACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 214 --------------------~-~--~~~~~~------g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
. . ..+..+ |.=....|+|++|..-+-+++|+-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 211 ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 0 012222 222346888999999999998874
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.26 E-value=0.54 Score=37.54 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=55.6
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT 216 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 216 (251)
.-...+.+.+...+||.....-++.+|. ++.....+-..+.-.|+|++|+..++-+-.+.|++..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3456788899999999999999999998 8877777777788899999999999999999998743
No 333
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=4.5 Score=35.31 Aligned_cols=94 Identities=15% Similarity=0.070 Sum_probs=72.4
Q ss_pred HHHhhcCHHH-HHHHHHHHHccCCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhhCCCChHHHHHH
Q 025537 155 TAFRAKDFST-AIDCYTQFIDGGTMVSPTVYARRCLSYLMN------------DMPQEALGDAMQAQVVSPDWPTALYLQ 221 (251)
Q Consensus 155 ~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~~ 221 (251)
..-..|.|+. +++.=.+.++.+|+ ...+|+-+-.++... .-+++-+.....|++.+|+...+|+.+
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe-~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPE-FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3344566654 77777888888997 778887765544332 235666788888999999999999999
Q ss_pred HHHHHhCCC--HHHHHHHHHHHHhhhhhcc
Q 025537 222 AACLFSLGM--ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 222 g~~~~~~~~--~~~A~~~~~~al~l~P~~~ 249 (251)
..++...+. +..=++..+++|++||+|-
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccc
Confidence 999998776 5778889999999999864
No 334
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=92.19 E-value=0.13 Score=41.68 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=25.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|..||++.++.+.|+.
T Consensus 232 ~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 232 EIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 46678889999999999999999999975
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.18 E-value=1 Score=40.20 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHH
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYL 220 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 220 (251)
.-.....+.+.|.+--..|.+++...|+ ++.+|..-|.-.+..+. .+.|...+.++|+.+|++++.|+-
T Consensus 110 ~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 110 SYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 3333344445588888999999999999 99999988888887776 899999999999999999987753
No 336
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=92.17 E-value=0.15 Score=42.30 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=27.5
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+..+..+|+..+|..||++.++++.|..+
T Consensus 261 ~~~~~li~~~l~~~p~~Rps~~eil~~l~~~ 291 (293)
T cd05053 261 QELYHLMRDCWHEVPSQRPTFKQLVEDLDRM 291 (293)
T ss_pred HHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence 3567788999999999999999999999865
No 337
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=92.16 E-value=0.15 Score=41.52 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=25.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|+.||++.++.+.|+.+
T Consensus 233 ~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 233 KVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred HHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 355677799999999999999999998754
No 338
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=2.3 Score=38.01 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCC------
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQV-VSPDW------ 214 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~------ 214 (251)
..+..+.-.|.-...-+.|+.|...|..|+++-...+- .+-.|+|.+|+..|+-+ ++.++++ +.|.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcchH
Confidence 35778888999999999999999999999987543233 34466899999987643 3333333 45543
Q ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 215 ----PTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 215 ----~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
..++|-.|...+..+++.||.....+.|+..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4668888999999999999999999999875
No 339
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=92.05 E-value=0.15 Score=41.57 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.6
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+.++..+|++.+|++||++.++.+.|..+
T Consensus 236 ~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 236 ALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 466788899999999999999999999764
No 340
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=91.95 E-value=0.028 Score=45.60 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=21.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+..+|++.+|..||+|.+|+..
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~vl~~ 253 (256)
T cd08218 228 DLRNLVSQLFKRNPRDRPSVNSILEK 253 (256)
T ss_pred HHHHHHHHHhhCChhhCcCHHHHhhC
Confidence 35667779999999999999999863
No 341
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=91.91 E-value=0.14 Score=41.72 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.3
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
..+..++.+|++.+|.+||+|.++...|+.
T Consensus 231 ~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 231 KELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred HHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 346778889999999999999999999874
No 342
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=91.87 E-value=0.12 Score=42.24 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=20.4
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
+..+...|+..+|.+||+|.++++.|
T Consensus 234 ~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 234 IYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp HHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 55678899999999999999999876
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.76 E-value=0.27 Score=24.85 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 025537 183 VYARRCLSYLMNDMPQEALGDAM 205 (251)
Q Consensus 183 ~~~~~a~~~~~~~~~~~A~~~~~ 205 (251)
+..++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666777777777777766543
No 344
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=91.75 E-value=0.14 Score=42.50 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=25.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+.++..+|++.+|..||+|.+|++.|.
T Consensus 267 ~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 267 PVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 5778889999999999999999999885
No 345
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=91.74 E-value=0.14 Score=42.48 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=22.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+..+|++.+|..||+|.+++..
T Consensus 241 ~~~~li~~~l~~~p~~Rpt~~eil~~ 266 (287)
T cd06621 241 EFKDFIKQCLEKDPTRRPTPWDMLEH 266 (287)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHhC
Confidence 35567789999999999999998874
No 346
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=91.69 E-value=0.092 Score=42.91 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
.+..+..+|++.+|.+||++.+++.
T Consensus 240 ~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 240 EAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred HHHHHHHHHcCCCchhCCCHHHHHh
Confidence 3556778999999999999999875
No 347
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.66 E-value=0.51 Score=35.08 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=37.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM 196 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~ 196 (251)
++...+++...+..|+|.-|..+.+.++..+|+ +..+..-++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~-n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD-NEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888888888887 88888878877776654
No 348
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=91.64 E-value=0.16 Score=43.11 Aligned_cols=31 Identities=35% Similarity=0.545 Sum_probs=27.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
.+..+..+|++.+|..||++.++++.|+.+.
T Consensus 305 ~l~~li~~cl~~dp~~RPs~~el~~~l~~~~ 335 (338)
T cd05102 305 EIYRIMLACWQGDPKERPTFSALVEILGDLL 335 (338)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 3567888999999999999999999998764
No 349
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.54 E-value=3.2 Score=36.19 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537 150 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP-QEALGDAMQAQVVSPDWPTALYLQAACLFSL 228 (251)
Q Consensus 150 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 228 (251)
...+..+|+.|+..++-..++.+.+.+|. +.++. .+++.+.|+- ..-++-.++...+.|++.+..+-.+.+-+.-
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPH--PDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 35567789999999999999999999885 44332 4445555653 3334555566778999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhhhc
Q 025537 229 GMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 229 ~~~~~A~~~~~~al~l~P~~ 248 (251)
|+|-.|...-+.+..+.|..
T Consensus 343 ~e~~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 343 GEFSAARAKAEAAAREAPRE 362 (531)
T ss_pred cchHHHHHHHHHHhhhCchh
Confidence 99999999999888888863
No 350
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=91.50 E-value=0.11 Score=42.58 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=21.0
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+...|+..+|..||+|.+|+..
T Consensus 244 ~~~~li~~~l~~~p~~Rps~~~il~~ 269 (272)
T cd06629 244 VALDFLNACFTINPDNRPTARELLQH 269 (272)
T ss_pred HHHHHHHHHhcCChhhCCCHHHHhhC
Confidence 34456679999999999999998753
No 351
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.50 E-value=2.7 Score=38.92 Aligned_cols=101 Identities=10% Similarity=-0.056 Sum_probs=82.0
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----------------VSPTVYARRCLSYLMNDMPQEALGDAMQAQ 208 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 208 (251)
+..+-+-|..-++.++++.|+.+...|...... .+..+|...+...-..|-++.....|++.|
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 667788888889999999999999998855321 023466666666667888888889999999
Q ss_pred hhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 209 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 209 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
.+.---|..-.+.|..+..-..|++|.+.|++++.|.|
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 99888888888989988888889999999999888764
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.48 E-value=1 Score=36.03 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 192 LMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 192 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
++-++..+||.....-++.+|.+......+-..|.-.|+|+.|...++-+-++.|+.
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 334444455555554455555544444444444445555555555554444444443
No 353
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=91.47 E-value=0.08 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
.+..+..+|++.+|..||++.+++.
T Consensus 228 ~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 228 EFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred HHHHHHHHHHhcChhhCcCHHHHhc
Confidence 3556677999999999999999875
No 354
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=91.40 E-value=0.17 Score=41.03 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=24.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+..+|++.+|..||+|.++++.|
T Consensus 229 ~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 229 TVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 467888899999999999999999886
No 355
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=91.39 E-value=0.027 Score=45.69 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+..+|++.+|..||+|.+|++.
T Consensus 237 ~~~~l~~~~l~~~p~~Rp~~~~il~~ 262 (265)
T cd08217 237 ELNEVIKSMLNVDPDKRPSTEELLQL 262 (265)
T ss_pred HHHHHHHHHccCCcccCCCHHHHhhC
Confidence 45677889999999999999999863
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.39 E-value=0.33 Score=40.72 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=66.5
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 168 CYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL-QAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 168 ~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
.|.++-...|. ++.+|...+.--.+.|.|.+--..|.+++...|.+++.|.. -+.=+...++++.+.+.|.++|+++|
T Consensus 95 ~~~R~tnkff~-D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFN-DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34455555566 78888877776677888999999999999999999999977 56668888999999999999999998
Q ss_pred hcc
Q 025537 247 KKN 249 (251)
Q Consensus 247 ~~~ 249 (251)
++.
T Consensus 174 ~~p 176 (435)
T COG5191 174 RSP 176 (435)
T ss_pred CCc
Confidence 753
No 357
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=91.33 E-value=0.17 Score=41.71 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+...|++.+|..||++.+|.+.|..
T Consensus 254 ~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 254 RVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 46677889999999999999999999864
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.33 E-value=0.45 Score=31.17 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..++..+=+.|+|.+|+.+|+++|++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3555666666677777777777777766643
No 359
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=91.30 E-value=0.16 Score=42.09 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=25.9
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
..+.++..+|++.+|..||++.++.+.|.
T Consensus 267 ~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 267 KDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred HHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 35788899999999999999999998874
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.26 E-value=0.81 Score=36.02 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM---VSPTVYARRCLSYLMNDMPQEAL 201 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~a~~~~~~~~~~~A~ 201 (251)
++.....|..| .+.+.++|+.+|.+++++.+. .+++++..++.+|+++|+++.|-
T Consensus 141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44445555544 478999999999999998542 47899999999999999999873
No 361
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=91.10 E-value=0.2 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.8
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+..+..+|++.+|.+||++.++...|..+
T Consensus 242 ~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 242 DELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 3567777899999999999999999998764
No 362
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=91.10 E-value=0.059 Score=44.37 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.1
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
..+..+...|++.+|..||++.+++..
T Consensus 227 ~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 227 KPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred HHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 446678889999999999999999765
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.06 E-value=3.2 Score=36.06 Aligned_cols=99 Identities=11% Similarity=-0.077 Sum_probs=64.9
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc--------------CCC-----------CCHH---HHHHHHHHHHhcCC
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------------GTM-----------VSPT---VYARRCLSYLMNDM 196 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~-----------~~~~---~~~~~a~~~~~~~~ 196 (251)
....+.+.+..+..+|++..|-++.++||-. ++. +|.. +.+.......+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4667788888888888888888888888611 111 1222 33445666667788
Q ss_pred HHHHHHHHHHHHhhCCC-ChH-HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537 197 PQEALGDAMQAQVVSPD-WPT-ALYLQAACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 197 ~~~A~~~~~~al~~~p~-~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~ 243 (251)
+..|++.|+-.+.+||. +|- +.+.+-....+.++|+--+..++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 88888888888888887 543 334444444566777766666654443
No 364
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=91.00 E-value=0.21 Score=41.33 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|..||++.++++.|+
T Consensus 260 ~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 260 ELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred HHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 4667888999999999999999999986
No 365
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.97 E-value=2.6 Score=31.94 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhh
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 247 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 247 (251)
..+.....+-...++.+++...+.-.-.+.|.++..-..-|..+...|+|.+|+..|+...+-.|.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 445566667778889999999888888899999999999999999999999999999987765553
No 366
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=90.94 E-value=0.23 Score=41.14 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=28.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|.+||++.+|...|..+.+.
T Consensus 250 ~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~ 282 (288)
T cd05093 250 EVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA 282 (288)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence 367788899999999999999999999887644
No 367
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=90.88 E-value=0.2 Score=40.51 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..++.+|++.+|..||++.++++.|
T Consensus 229 ~~~~l~~~~l~~~p~~Rp~~~~~l~~l 255 (256)
T cd05112 229 SVYELMQHCWKERPEDRPSFSLLLHQL 255 (256)
T ss_pred HHHHHHHHHcccChhhCCCHHHHHHhh
Confidence 467789999999999999999999886
No 368
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=90.88 E-value=0.22 Score=40.42 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=25.6
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|+..+|++||++.++.+.|+.
T Consensus 232 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 232 ELYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 45677889999999999999999999874
No 369
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=90.85 E-value=0.15 Score=41.63 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=19.0
Q ss_pred HHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 47 RLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 47 ~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+...|. .+|.+||++.+|+..|.
T Consensus 245 ~l~~~c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 245 EVMQFCW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred HHHHHHh-cCcccCCCHHHHHHHhc
Confidence 3445777 57999999999998874
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.70 E-value=1.1 Score=38.04 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTALYLQAACLFSLGMENDARETL 238 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 238 (251)
+|..-..+|+-.....| ++.+-.|++.+..+..=...++...+....- =..+..+|--+|..+.++|+.++|...|
T Consensus 311 DW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 311 DWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred ChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 44555566666666666 5777788998888777777777766654443 2246667778899999999999999999
Q ss_pred HHHHhhhhh
Q 025537 239 KDGTNLEAK 247 (251)
Q Consensus 239 ~~al~l~P~ 247 (251)
++++.+.++
T Consensus 389 drAi~La~~ 397 (415)
T COG4941 389 DRAIALARN 397 (415)
T ss_pred HHHHHhcCC
Confidence 999999775
No 371
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.2 Score=42.54 Aligned_cols=82 Identities=13% Similarity=-0.002 Sum_probs=67.6
Q ss_pred HHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhC
Q 025537 149 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL 228 (251)
Q Consensus 149 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 228 (251)
..+.+...++.+.+..|+..-..+++.++. ...+++.++..++.+.++++|+++...|....|++....-.+..+-...
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s-~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERS-KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChh-hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 334566677888888888888888888877 8899999999999999999999999999999999987766666555554
Q ss_pred CCH
Q 025537 229 GME 231 (251)
Q Consensus 229 ~~~ 231 (251)
.++
T Consensus 357 ~~~ 359 (372)
T KOG0546|consen 357 KQY 359 (372)
T ss_pred HHH
Confidence 444
No 372
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=90.62 E-value=0.18 Score=43.70 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhhc
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLMSLQKEA 77 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~~ 77 (251)
+..+..+|...+|..||++.+++..|+.+....
T Consensus 275 l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~ 307 (362)
T KOG0192|consen 275 LSSLMERCWLVDPSRRPSFLEIVSRLESIMSHI 307 (362)
T ss_pred HHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhh
Confidence 445555699999999999999999999876543
No 373
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=90.54 E-value=0.23 Score=40.22 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=26.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|+.||++.++.+.|..+
T Consensus 226 ~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 226 EIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 456788899999999999999999999865
No 374
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=90.51 E-value=0.099 Score=42.73 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.6
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
+..+..+|++.+|..||++.+++.
T Consensus 245 ~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 245 FQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred HHHHHHHHcCCChhhCCCHHHHhh
Confidence 556777999999999999998864
No 375
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=90.49 E-value=0.25 Score=40.58 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
.+..+..+|++.+|+.||++.++++.|..+.
T Consensus 247 ~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~ 277 (280)
T cd05043 247 ELFAVMACCWALDPEERPSFSQLVQCLTDFH 277 (280)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 3567788999999999999999999998764
No 376
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=90.47 E-value=0.25 Score=42.19 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=28.0
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
..+..++.+|++.+|.+||++.++++.|..+-
T Consensus 303 ~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~ 334 (337)
T cd05054 303 PEIYSIMLDCWHNNPEDRPTFSELVEILGDLL 334 (337)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 34678889999999999999999999998754
No 377
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=90.44 E-value=0.25 Score=40.30 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.5
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+.++..+|++.+|+.||++.++...|+.+
T Consensus 242 ~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 242 EDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 3577888899999999999999999999764
No 378
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=90.36 E-value=0.26 Score=39.86 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+..+|++.+|..||++.+++..
T Consensus 228 ~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 228 LRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHHHHHHHhCCcccCCCHHHHhhc
Confidence 4556679999999999999998764
No 379
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=90.32 E-value=0.26 Score=40.34 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=26.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|..||++.+++..|..+
T Consensus 239 ~~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 239 EVYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred HHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 466888899999999999999999999765
No 380
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.30 E-value=2.2 Score=32.99 Aligned_cols=66 Identities=11% Similarity=-0.055 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALYLQAACLFSLGMENDARETLKDGTNLE 245 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~ 245 (251)
-..++..+|..|.+.|++++|++.|.++...... -...++.+-.+....+++........++-.+-
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999998886533 25777888888999999999999988886553
No 381
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=90.30 E-value=0.27 Score=39.86 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
.+..+...|++.+|+.||++.+++..|..+.
T Consensus 230 ~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~ 260 (262)
T cd05058 230 PLYEVMLSCWHPKPEMRPTFSELVSRIEQIF 260 (262)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence 4667888999999999999999999998653
No 382
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=0.89 Score=41.81 Aligned_cols=67 Identities=7% Similarity=0.032 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
.++.|-|.-+++.++|..+++.|...++.-|. +++..-.+..||..+.+.|.|.+.+.+|=+.+|++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 34556788889999999999999999987664 57888889999999999999999999999999874
No 383
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=90.18 E-value=0.3 Score=39.86 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|.+||++.++.+.|..+
T Consensus 242 ~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 242 GLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 356788899999999999999999998753
No 384
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=90.12 E-value=0.29 Score=40.84 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|..||+|.++++.|..+...
T Consensus 267 ~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~ 299 (304)
T cd05101 267 ELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL 299 (304)
T ss_pred HHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence 455677899999999999999999999876543
No 385
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=90.10 E-value=0.29 Score=40.72 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=25.6
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
..+.++..+|++.+|..||+|.+|.+.|.
T Consensus 267 ~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 267 DSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 35667888999999999999999999885
No 386
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.07 E-value=0.9 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..+|..+=+.|+|++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556667777777888999999988888754
No 387
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.96 E-value=0.57 Score=30.69 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHccC
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG 176 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 176 (251)
.+..+..+|...=..|+|++|+.+|.+||+..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 46666777777788899999999999998763
No 388
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=89.96 E-value=0.31 Score=39.76 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=26.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|..||+|.++++.|..+
T Consensus 237 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 237 ALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred HHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 456788899999999999999999998753
No 389
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=89.93 E-value=0.32 Score=40.12 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=26.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|.+||++.+++..|+.+
T Consensus 254 ~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 254 EVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 577788899999999999999999998764
No 390
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=1.3 Score=36.97 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537 187 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD 240 (251)
Q Consensus 187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 240 (251)
-+.-.+..|++.+|...+..++..+|.+.++...++.+|...|++++|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455667799999999999999999999999999999999999999999886654
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.75 E-value=5.2 Score=33.26 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCC-------
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG------- 229 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~------- 229 (251)
+...|+..|.++-... +..+.+++|.+|.. -.++.+|+..|.+|-+... ..+.+.++ +++..|
T Consensus 170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 3458999999988876 67888899988865 3489999999999999887 89999999 777666
Q ss_pred --------CHHHHHHHHHHHHhhhhh
Q 025537 230 --------MENDARETLKDGTNLEAK 247 (251)
Q Consensus 230 --------~~~~A~~~~~~al~l~P~ 247 (251)
+...|...|.++....+.
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCh
Confidence 788888888887765543
No 392
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=89.70 E-value=0.16 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=21.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
.+..+..+|+..+|..||++.+++.
T Consensus 235 ~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 235 VFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhc
Confidence 4567788999999999999998864
No 393
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=89.68 E-value=0.096 Score=43.29 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+.++..+|++.+|..||++.+|+..
T Consensus 242 ~l~~li~~~l~~~p~~Rpt~~~i~~~ 267 (288)
T cd06616 242 SFVNFINLCLIKDESKRPKYKELLEH 267 (288)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcC
Confidence 46677779999999999999998764
No 394
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=89.53 E-value=0.41 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
+..+..+|+..+|..||++.++++.|..+.+.
T Consensus 240 ~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~ 271 (279)
T cd05111 240 VYMVMVKCWMIDENVRPTFKELANEFTRMARD 271 (279)
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence 45567799999999999999999999876543
No 395
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=89.49 E-value=0.32 Score=40.03 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=25.0
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+...|++.+|.+||++.+++..|+
T Consensus 254 ~~~~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 254 WVYTLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred HHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence 3667888999999999999999999885
No 396
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=89.44 E-value=0.31 Score=40.67 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+.++..+|++.+|..||+|.+|.+.|+
T Consensus 276 ~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 276 GLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred HHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 4667888999999999999999998875
No 397
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=89.38 E-value=0.29 Score=39.70 Aligned_cols=27 Identities=26% Similarity=0.520 Sum_probs=24.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+..+|+..+|++||+|.+++..|
T Consensus 229 ~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 229 EVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 467788899999999999999999876
No 398
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=89.38 E-value=0.38 Score=40.24 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+...|++.+|.+||+|.+|+..|..+...
T Consensus 270 ~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~ 302 (307)
T cd05098 270 ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL 302 (307)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence 455678899999999999999999999877544
No 399
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=89.35 E-value=0.19 Score=40.95 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=20.4
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
+..+..+|++.+|..||++.+++.
T Consensus 238 ~~~~i~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 238 AIDFVTSCLTRDQHERPSALQLLR 261 (265)
T ss_pred HHHHHHHHhcCCcccCCCHHHHhc
Confidence 456677999999999999998864
No 400
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=89.35 E-value=0.41 Score=38.81 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=26.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|+..+|..||++.+++++|..+
T Consensus 236 ~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 236 ELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 455677899999999999999999999865
No 401
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=89.33 E-value=0.29 Score=42.55 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|+.||+|.++++.|+.
T Consensus 345 ~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 345 EMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred HHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 35567789999999999999999999874
No 402
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.29 E-value=1.4 Score=32.75 Aligned_cols=54 Identities=22% Similarity=0.108 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHH
Q 025537 180 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEND 233 (251)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 233 (251)
.......++...+..|+|.-|++.++.++..+|++..+...++.++.++|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456677788888899999999999999999999999999999999998876543
No 403
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=89.23 E-value=0.086 Score=42.37 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=21.0
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
.+..+..+|+..+|..||++.+++.
T Consensus 232 ~l~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 232 EAKDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred HHHHHHHHhCcCChhhCCCHHHHhh
Confidence 3555667999999999999999875
No 404
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.23 E-value=0.82 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.+..+..+|..+=+.|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556667777777788888888888777643
No 405
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=89.17 E-value=0.39 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=25.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+.++...|++.+|..||++.++.+.|..+
T Consensus 236 ~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 236 LLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred HHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 466678899999999999999999998653
No 406
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=89.06 E-value=0.33 Score=39.22 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|+..+|..||++.+++..|..
T Consensus 227 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 227 EVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred HHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 45667788999999999999999999864
No 407
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=89.06 E-value=0.34 Score=39.06 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.4
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
..+..+..+|++.+|..||++.++.++|.
T Consensus 223 ~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 223 DAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 34667888999999999999999999875
No 408
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=89.03 E-value=0.37 Score=39.31 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+...|++.+|.+||+|.+++..|+.+
T Consensus 239 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 239 ALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 356788899999999999999999998753
No 409
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.95 E-value=0.9 Score=29.85 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..++..+=+.|+|++|+.+|..+|+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556667777777888888888888888754
No 410
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=88.95 E-value=0.47 Score=39.87 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=28.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|..||++.++++.|..+...
T Consensus 264 ~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~ 296 (314)
T cd05099 264 ELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA 296 (314)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence 455778899999999999999999999877544
No 411
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=88.83 E-value=0.36 Score=39.05 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|+.||++.+++..|..
T Consensus 227 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 227 VVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 35567789999999999999999999865
No 412
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=88.81 E-value=0.36 Score=41.24 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK 75 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~ 75 (251)
.+.++...|++.+|..||++.++++.|..+.+
T Consensus 310 ~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~ 341 (343)
T cd05103 310 EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 341 (343)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 46678889999999999999999999987643
No 413
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=88.66 E-value=0.34 Score=39.79 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|.+||++.+++..|+
T Consensus 249 ~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 249 MLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 4667888999999999999999999875
No 414
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=88.62 E-value=0.52 Score=38.00 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=56.6
Q ss_pred HHhhcCHHHHHHHHHHHHccC---CCC----C----HHHHHHHHHHHHhcCCH-HHH-HHHHHHHHh-h-CCCC--hHHH
Q 025537 156 AFRAKDFSTAIDCYTQFIDGG---TMV----S----PTVYARRCLSYLMNDMP-QEA-LGDAMQAQV-V-SPDW--PTAL 218 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~---p~~----~----~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~-~-~p~~--~~~~ 218 (251)
+|..|+|+.|++....||+.+ |+. . ++-...-+......|.. +-. ...+..... . -|+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 467899999999999999875 320 1 12233445555556652 222 222222211 1 2333 3445
Q ss_pred HHHHHHHH---------hCCCHHHHHHHHHHHHhhhhhc
Q 025537 219 YLQAACLF---------SLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 219 ~~~g~~~~---------~~~~~~~A~~~~~~al~l~P~~ 248 (251)
-..|..+. ..++...|+.++++|+++||+-
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55566662 4568889999999999999974
No 415
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=88.62 E-value=0.42 Score=38.41 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=25.5
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
..+..+..+|++.+|.+||++.++.+.|.
T Consensus 221 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 221 DDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 45677888999999999999999999874
No 416
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=88.60 E-value=0.32 Score=39.49 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=24.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+...|++.+|+.||++.++++.|
T Consensus 231 ~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 231 ELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred HHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 466788899999999999999999886
No 417
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.49 E-value=0.89 Score=29.76 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 025537 163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS 227 (251)
Q Consensus 163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 227 (251)
+.|..+..+|++.|-. .. +.=|.. .|++|++.+.+++...|+.+.....+..+..-
T Consensus 4 ~~A~~~a~~AVe~D~~--gr--~~eAi~-----~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY 59 (75)
T cd02682 4 EMARKYAINAVKAEKE--GN--AEDAIT-----NYKKAIEVLSQIVKNYPDSPTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHHHHHHHhc--CC--HHHHHH-----HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3466666667666632 00 001111 14556666666677788888766666655433
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.39 E-value=1 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 025537 219 YLQAACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A~~~~~~al~ 243 (251)
+.+|.+|..+|+++.|...+++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 419
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=88.26 E-value=0.15 Score=42.72 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
+..+..+|++.+|..||++..+.+.|..
T Consensus 246 ~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 246 AQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred HHHHHHHHhccChhhccCccCHHHHHhC
Confidence 4567779999999999998877777754
No 420
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=88.03 E-value=0.44 Score=41.37 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+..+|++.+|..||++.++++.|+.+
T Consensus 343 ~l~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 343 EIYSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 355677799999999999999999999865
No 421
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=87.84 E-value=0.41 Score=39.42 Aligned_cols=27 Identities=37% Similarity=0.682 Sum_probs=24.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+...|++.+|.+||++.++++.|
T Consensus 247 ~~~~li~~cl~~~p~~Rps~~~il~~L 273 (274)
T cd05076 247 ELATLISQCLTYEPTQRPSFRTILRDL 273 (274)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHhh
Confidence 466788899999999999999999876
No 422
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=87.78 E-value=0.51 Score=38.75 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=24.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|+.||++.+|++.|.
T Consensus 249 ~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 249 PVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 4567888999999999999999998874
No 423
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=87.54 E-value=1 Score=38.17 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=36.6
Q ss_pred CEEEeecCCC-CCc--hhhhHHHHcCCccccccccccCCCCHHHHHHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 1 MLLDLLSGKH-IPP--SHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 1 vlLEl~tgr~-~~~--~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
+++||+||++ +.. ......+..+.- . .-|.+....+ .++..++ ..|.+.+|..||++.+.+..-
T Consensus 211 tVvEM~Tg~~PW~~~~~~~~~~~~ig~~-~-~~P~ip~~ls-~~a~~Fl---~~C~~~~p~~Rpta~eLL~hp 277 (313)
T KOG0198|consen 211 TVVEMLTGKPPWSEFFEEAEALLLIGRE-D-SLPEIPDSLS-DEAKDFL---RKCFKRDPEKRPTAEELLEHP 277 (313)
T ss_pred EEEeccCCCCcchhhcchHHHHHHHhcc-C-CCCCCCcccC-HHHHHHH---HHHhhcCcccCcCHHHHhhCh
Confidence 5899999988 432 112222222211 1 1233332222 3344444 489999999999999987763
No 424
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=87.45 E-value=0.58 Score=39.15 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|+.||++.+++..|..
T Consensus 272 ~~~~li~~cl~~~p~~Rpt~~ell~~l~~ 300 (302)
T cd05055 272 EIYDIMKTCWDADPLKRPTFKQIVQLIGK 300 (302)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence 46678889999999999999999999875
No 425
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.44 E-value=1.4 Score=28.85 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666677777777888888888888887754
No 426
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.43 E-value=12 Score=36.13 Aligned_cols=61 Identities=15% Similarity=-0.028 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----------HhhCCC----------ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537 182 TVYARRCLSYLMNDMPQEALGDAMQA----------QVVSPD----------WPTALYLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
..|++.|.-+-..++-+.|+++|+++ +.-+|. ++..|-..|.-+...|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 46777787777888889999999885 333443 3455666788888899999999998876
Q ss_pred H
Q 025537 242 T 242 (251)
Q Consensus 242 l 242 (251)
-
T Consensus 939 ~ 939 (1416)
T KOG3617|consen 939 K 939 (1416)
T ss_pred h
Confidence 4
No 427
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.40 E-value=6.5 Score=38.52 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH-------HHHHHHHHhCCCHH
Q 025537 160 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL-------YLQAACLFSLGMEN 232 (251)
Q Consensus 160 ~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~~g~~~~~~~~~~ 232 (251)
..|.+|+.-|++. .-.|. .+-=|...|.+|..+|+|++-+..+.-|++-.|++|..- |++-.+.+. +-.
T Consensus 533 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 608 (932)
T PRK13184 533 RDFTQALSEFSYL-HGGVG-APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRR 608 (932)
T ss_pred HHHHHHHHHHHHh-cCCCC-CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHH
Confidence 3567777777763 33344 566788999999999999999999999999999998654 444444333 334
Q ss_pred HHHHHHHHHHhhhhhcc
Q 025537 233 DARETLKDGTNLEAKKN 249 (251)
Q Consensus 233 ~A~~~~~~al~l~P~~~ 249 (251)
.|...---++.+-|++.
T Consensus 609 ~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 609 EALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHHHhCcccc
Confidence 56666666777777643
No 428
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.37 E-value=6.3 Score=36.07 Aligned_cols=85 Identities=16% Similarity=0.008 Sum_probs=69.7
Q ss_pred HHHHHHHHHHccCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHH-
Q 025537 164 TAIDCYTQFIDGGTMVSPTVYAR--RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD- 240 (251)
Q Consensus 164 ~A~~~~~~al~~~p~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~- 240 (251)
-|+..+...+..+|. ++.+... ++..+..+++...++-....++..+|.++.++.++|.+....|..-.+...+..
T Consensus 49 ~~~~a~~~~~~~~~~-~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 49 LAIYALLLGIAINDV-NPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred HHHHHHHccCccCCC-CHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 367777777778876 7765322 688888899999999999999999999999999999999888888777777766
Q ss_pred HHhhhhhcc
Q 025537 241 GTNLEAKKN 249 (251)
Q Consensus 241 al~l~P~~~ 249 (251)
+.+..|++.
T Consensus 128 a~~~~~~~~ 136 (620)
T COG3914 128 AEWLSPDNA 136 (620)
T ss_pred HHhcCcchH
Confidence 788877764
No 429
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.34 E-value=8.5 Score=34.59 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 156 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 156 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
....|+.-.|-.-...+++-.|. .+..-..++.++..+|+|+.|..+..-+
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 44567777777777777777776 7777777777777888888777666544
No 430
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=87.18 E-value=0.14 Score=41.54 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+...|+..+|..||++.+++..
T Consensus 233 ~~~li~~~l~~~p~~Rpt~~~ll~~ 257 (265)
T cd06605 233 FQDFVNLCLIKDPRERPSYKELLEH 257 (265)
T ss_pred HHHHHHHHcCCCchhCcCHHHHhhC
Confidence 5566679999999999999998743
No 431
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=87.15 E-value=0.59 Score=37.90 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|+..+|..||++.++...|+.
T Consensus 231 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 231 SLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 46678889999999999999999988863
No 432
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=87.12 E-value=0.48 Score=38.46 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+..+|++.+|..||++.+++..|
T Consensus 229 ~~~~li~~cl~~~p~~Rp~~~~ll~~~ 255 (256)
T cd05113 229 KVYAIMYSCWHEKAEERPTFQQLLSSI 255 (256)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence 466778899999999999999999876
No 433
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.07 E-value=1.2 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
+.++|+.+.++|++.|. .|+|++|+..|..|++.
T Consensus 2 ~l~kai~Lv~~A~~eD~----------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE----------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH----------------hhhHHHHHHHHHHHHHH
Confidence 45788888888887772 57788888888888774
No 434
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=87.02 E-value=0.57 Score=39.41 Aligned_cols=33 Identities=18% Similarity=0.528 Sum_probs=28.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+...|++.+|..||++.+++..|..+.+.
T Consensus 239 ~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~ 271 (316)
T cd05108 239 DVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 271 (316)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence 466788899999999999999999999876544
No 435
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.99 E-value=3.5 Score=29.20 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHhCCC-----------HHHHHHHHHHHHhhhhhc
Q 025537 187 RCLSYLMNDMPQEALGDAMQAQVVSPDWP---TALYLQAACLFSLGM-----------ENDARETLKDGTNLEAKK 248 (251)
Q Consensus 187 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~l~P~~ 248 (251)
+|..++..|++-+|++..+..+...++.. -.+..-|.+++.+.. .-.|+++|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 56778899999999999999999888765 455666888765542 467888999999888863
No 436
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=86.97 E-value=0.6 Score=38.82 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|..||++.++++.|..+...
T Consensus 246 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~ 278 (297)
T cd05089 246 EVYELMRQCWRDRPYERPPFAQISVQLSRMLEA 278 (297)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 356788899999999999999999999866543
No 437
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=86.95 E-value=0.28 Score=39.94 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~ 68 (251)
+..+..+|++.+|..||++.++++
T Consensus 240 ~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 240 AIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred HHHHHHHHccCCchhCcCHHHHhh
Confidence 445666999999999999998875
No 438
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=86.91 E-value=0.66 Score=37.74 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=24.6
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|+..+|..||++.++.+.|.
T Consensus 241 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 241 KIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 3567788999999999999999999885
No 439
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=86.90 E-value=0.61 Score=38.19 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+...|++.+|..||++.+|++.|.
T Consensus 252 ~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 252 EVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 4567788999999999999999999875
No 440
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=86.78 E-value=0.49 Score=38.56 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHhcccCcCCCCCCCHHHHHHHHH
Q 025537 48 LASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 48 va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
+-..|. .+|+.||++.+|.+.|.
T Consensus 246 ~~~~~~-~dp~~Rpt~~~v~~~l~ 268 (269)
T cd05042 246 VMQFCW-LDPETRPTAEEVHELLT 268 (269)
T ss_pred HHHHHh-cCcccccCHHHHHHHhc
Confidence 344666 49999999999998873
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.75 E-value=1.8 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHccCCCCCHHHHHH
Q 025537 161 DFSTAIDCYTQFIDGGTMVSPTVYAR 186 (251)
Q Consensus 161 ~~~~A~~~~~~al~~~p~~~~~~~~~ 186 (251)
+++.|...|++++...|. +..+|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~-~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPK-SVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCC-ChHHHHH
Confidence 345555555555555554 5555443
No 442
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=86.73 E-value=0.59 Score=38.64 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
..+..+..+|++.+|+.||+|.++++.|...
T Consensus 248 ~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~ 278 (288)
T cd05061 248 ERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD 278 (288)
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence 3466788899999999999999999998754
No 443
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.70 E-value=3.2 Score=37.14 Aligned_cols=98 Identities=12% Similarity=-0.088 Sum_probs=71.1
Q ss_pred HHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCC
Q 025537 151 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM 230 (251)
Q Consensus 151 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 230 (251)
..+...-..|+|+.|.....-+=..-.. ...+..-+-.....+|++++|.....-.+.-.-..++..--.+..-..+|-
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence 4455556678899988877654333222 222233344456789999999999888887666677776666777889999
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 025537 231 ENDARETLKDGTNLEAKKN 249 (251)
Q Consensus 231 ~~~A~~~~~~al~l~P~~~ 249 (251)
+++|...+++.+.++|..+
T Consensus 407 ~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 407 FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHHHhccCChhc
Confidence 9999999999999999754
No 444
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=86.68 E-value=0.6 Score=37.83 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|+..+|+.||++.++...|+.
T Consensus 231 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 231 ELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 46677889999999999999999999864
No 445
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=86.66 E-value=0.55 Score=41.31 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=27.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQ 74 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~ 74 (251)
.+..+..+|++.+|+.||++.++++.|..+.
T Consensus 368 ~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 368 EVYDIMVKCWNSEPEKRPSFLHLSDIVESLL 398 (400)
T ss_pred HHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence 4667888999999999999999999998653
No 446
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=86.65 E-value=0.26 Score=40.18 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=17.5
Q ss_pred HHHhcccCcCCCCCCCHHHHHH
Q 025537 47 RLASRCLQSEARERPNAKSLVI 68 (251)
Q Consensus 47 ~va~~C~~~~p~~RP~m~~v~~ 68 (251)
+..+.|+..+|..||+|.+++.
T Consensus 239 ~~li~~~~~~p~~Rp~~~eil~ 260 (266)
T cd06651 239 RDFLGCIFVEARHRPSAEELLR 260 (266)
T ss_pred HHHHHHhcCChhhCcCHHHHhc
Confidence 3334688889999999999864
No 447
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.55 E-value=13 Score=28.80 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=73.9
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhCCCChHHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--V-SPTVYARRCLSYLMNDMPQEALGDAMQA-QVVSPDWPTALYLQ 221 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~ 221 (251)
.......|.....+|+-..|+..|+.+-.-.|- . ...+...-+..++..|.|+......+.. ..-+|-...+.--+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 345567788889999999999999996654432 1 1234555677888899999877766652 34566667777788
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 025537 222 AACLFSLGMENDARETLKDGTN 243 (251)
Q Consensus 222 g~~~~~~~~~~~A~~~~~~al~ 243 (251)
|.+-++.|+|..|...|.+...
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999998754
No 448
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=86.53 E-value=0.72 Score=37.40 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|+..+|..||++.++.+.|+.
T Consensus 231 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 231 SLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 35566779999999999999999998864
No 449
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=86.41 E-value=0.57 Score=37.67 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=24.9
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|..||++.++++.|.
T Consensus 223 ~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 223 EIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred HHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 4667888999999999999999999875
No 450
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=86.33 E-value=0.71 Score=37.44 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|+.||++.++...|..
T Consensus 231 ~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 231 ELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 46677789999999999999999999864
No 451
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=86.33 E-value=0.66 Score=38.76 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=27.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+..+|++.+|+.||++.+++..|..+...
T Consensus 251 ~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~ 283 (303)
T cd05088 251 EVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 283 (303)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 356788899999999999999999999865433
No 452
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=86.30 E-value=0.84 Score=37.15 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=26.5
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
..+.++..+|++.+|..||++.++.+.|+.
T Consensus 230 ~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~ 259 (262)
T cd05071 230 ESLHDLMCQCWRKEPEERPTFEYLQAFLED 259 (262)
T ss_pred HHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence 346788899999999999999999999875
No 453
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=86.22 E-value=0.7 Score=37.30 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|.+||++.++++.|.
T Consensus 229 ~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 229 DIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred HHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 4667888999999999999999999874
No 454
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=86.20 E-value=0.61 Score=38.12 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+...|++.+|++||++.+++..|+
T Consensus 249 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 249 KLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 4667888999999999999999999875
No 455
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=86.19 E-value=0.62 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+..+...|+..+|..||++.++++.|+.+
T Consensus 370 ~l~~li~~cl~~~P~~RPs~~ell~~L~~~ 399 (401)
T cd05107 370 EIYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399 (401)
T ss_pred HHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 456677799999999999999999999864
No 456
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.07 E-value=3.1 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 025537 162 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 212 (251)
Q Consensus 162 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 212 (251)
.+..++...+.++..| ++.++.+++.++..+|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P--~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP--DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555666666666 477777778888888888888777777777777
No 457
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=86.07 E-value=0.78 Score=37.41 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=27.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQK 75 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~ 75 (251)
.+..+..+|+..+|..||++.+++..|..+..
T Consensus 236 ~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~ 267 (270)
T cd05056 236 TLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ 267 (270)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 45567779999999999999999999987643
No 458
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=86.05 E-value=0.76 Score=39.01 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+...|++.+|..||+|.+++..|..+...
T Consensus 264 ~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~ 296 (334)
T cd05100 264 ELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV 296 (334)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence 466778899999999999999999999877543
No 459
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=85.95 E-value=0.32 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.4
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+..+|+..+|..||++.+++..
T Consensus 246 l~~li~~~l~~~p~~Rpt~~eil~~ 270 (296)
T cd06654 246 FRDFLNRCLDMDVEKRGSAKELLQH 270 (296)
T ss_pred HHHHHHHHCcCCcccCcCHHHHhhC
Confidence 4567779999999999999999874
No 460
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=85.95 E-value=0.77 Score=38.35 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+...|+..+|..||+|.++++.|..+...
T Consensus 239 ~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~ 271 (303)
T cd05110 239 DVYMVMVKCWMIDADSRPKFKELAAEFSRMARD 271 (303)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 466778899999999999999999999876544
No 461
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.66 E-value=2.6 Score=21.63 Aligned_cols=29 Identities=14% Similarity=-0.190 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 025537 195 DMPQEALGDAMQAQVVSPDWPTALYLQAA 223 (251)
Q Consensus 195 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 223 (251)
|+++.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999999999998887664
No 462
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.63 E-value=3.3 Score=34.62 Aligned_cols=58 Identities=12% Similarity=-0.085 Sum_probs=50.2
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ 206 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 206 (251)
.+...+..+...|.|.+|+++-++++.++|= +...+..+-..+..+|+--.|+..|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 4456677788999999999999999999996 888999999999999998888777665
No 463
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=85.40 E-value=0.69 Score=37.35 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.5
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
.+..+..+|++.+|..||++.+++..|.
T Consensus 225 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 252 (254)
T cd05083 225 DVYVLMTSCWETEPKKRPSFHKLREKLE 252 (254)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHc
Confidence 3557778999999999999999999875
No 464
>PHA02882 putative serine/threonine kinase; Provisional
Probab=85.30 E-value=0.35 Score=40.28 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
+.++...|.+.+|++||++.++.+.|
T Consensus 268 ~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 268 IYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 44566689999999999999998875
No 465
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.27 E-value=2.1 Score=42.44 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHH------HHHHH-HccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAID------CYTQF-IDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS----- 211 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 211 (251)
..+....+.|......+.|.+|.+ ++++. -.+.|. .+..|..++..+.++|++++|+....+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~-~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE-VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh-HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 467888999999999999998888 55532 234666 88899999999999999999999999986653
Q ss_pred ---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 025537 212 ---PDWPTALYLQAACLFSLGMENDARETLKDGTNL 244 (251)
Q Consensus 212 ---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l 244 (251)
|+....|-+++...+..++...|+..+.+++++
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 455678888898899999999999988888765
No 466
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.16 E-value=2.1 Score=28.02 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..+|...=..|+|++|+.+|.++|+.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566667777777888888888888887754
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.06 E-value=3.6 Score=33.60 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=35.4
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQA 207 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 207 (251)
...+.|..++..|+|++|+.+|+.+...--. ....+...+..|+..+|+.+..+..+-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3446677777777777777777776433110 12345555666677777766666655443
No 468
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=85.06 E-value=0.65 Score=37.86 Aligned_cols=27 Identities=22% Similarity=0.580 Sum_probs=23.4
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+..+|++.+|.+||++.+++..+
T Consensus 235 ~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 235 ELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 456678899999999999999998865
No 469
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=17 Score=38.89 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC---------
Q 025537 144 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-PD--------- 213 (251)
Q Consensus 144 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~--------- 213 (251)
.-++.|.+.+...-+.|+++.|-.+.-+|.+.. -+.++.-+|....+.|+-..|+...++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 346788888999999999999999999988877 45888899999999999999999999998653 22
Q ss_pred -C------hHHHHHHHHHHHhCCCH--HHHHHHHHHHHhhhhhccCC
Q 025537 214 -W------PTALYLQAACLFSLGME--NDARETLKDGTNLEAKKNKN 251 (251)
Q Consensus 214 -~------~~~~~~~g~~~~~~~~~--~~A~~~~~~al~l~P~~~~~ 251 (251)
. .++.+..+.-....|++ ++-++.|..+.++.|+++++
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 1 12333333333444443 55678899999999987754
No 470
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=12 Score=33.59 Aligned_cols=95 Identities=15% Similarity=-0.097 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHHH-hhcCHHHHHHHHHHHHccC---CC---CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCh
Q 025537 144 QETLNSKKHGDTAF-RAKDFSTAIDCYTQFIDGG---TM---VSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWP 215 (251)
Q Consensus 144 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~---p~---~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~ 215 (251)
-+|....+.|..++ ..++++.|...+++|..+. |. .-..++..++.+|.+.. .+..|.....+||++..++|
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 45778888888774 5889999999999998664 22 12345677899998887 78999999999999987765
Q ss_pred ----HHHHHHHHHHHhCCCHHHHHHHH
Q 025537 216 ----TALYLQAACLFSLGMENDARETL 238 (251)
Q Consensus 216 ----~~~~~~g~~~~~~~~~~~A~~~~ 238 (251)
+..+.++..+.-..+|.-|++.+
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 56678888888888998888764
No 471
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=7.6 Score=34.03 Aligned_cols=103 Identities=9% Similarity=-0.065 Sum_probs=71.8
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHH-----ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCChH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFI-----DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV----VSPDWPT 216 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al-----~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~ 216 (251)
+..++-....+-..++...--..+..-+ ..+...-+.+.+-+-.+|+..+.|+.|-....++.- -+..++.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 4555555555555666544444443333 333322345556677888888999999888888652 1224577
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhhhhc
Q 025537 217 ALYLQAACLFSLGMENDARETLKDGTNLEAKK 248 (251)
Q Consensus 217 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 248 (251)
..|.+|.+..-.++|..|.++|-+|++..|+.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 78899999999999999999999999999973
No 472
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=84.73 E-value=0.95 Score=37.13 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=27.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhhhhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 76 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~~~~ 76 (251)
.+..+...|+..+|..||++.+++..|..+...
T Consensus 239 ~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05109 239 DVYMIMVKCWMIDSECRPRFRELVDEFSRMARD 271 (279)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 456677899999999999999999998776443
No 473
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=84.69 E-value=0.92 Score=37.30 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.6
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|..||++.++.+.|..
T Consensus 254 ~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 254 RMYSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 35567779999999999999999998753
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.45 E-value=14 Score=30.17 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 025537 181 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSP--DW----PTALYLQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~g~~~~~~~~~~~A~~~~~~a 241 (251)
..+-..+|.-|+..|+|++|+..++.+..... .+ ......+..|+..+|+.++.+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556789999999999999999999976533 22 456677888999999999887765444
No 475
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.38 E-value=9.2 Score=35.73 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=67.3
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccC-------C---CCC---------------HHHHHHHHHHHHhcCCHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-------T---MVS---------------PTVYARRCLSYLMNDMPQEA 200 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p---~~~---------------~~~~~~~a~~~~~~~~~~~A 200 (251)
+-.+.--|......+..++|..++.++++.- | ... ..+.+..+.+..-.++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 5556666777777777767777776666431 1 100 11345566777779999999
Q ss_pred HHHHHHHHhhC---C------CChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 025537 201 LGDAMQAQVVS---P------DWPTALYLQAACLFSLGMENDARETLKD 240 (251)
Q Consensus 201 ~~~~~~al~~~---p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 240 (251)
......+.... | ..+..+|-.|..+...|+.+.|+..|.+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 88888776653 2 2478899999999999999999999983
No 476
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=84.26 E-value=0.91 Score=36.44 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=23.7
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+..+..+|++.+|.+||++.+++..|
T Consensus 235 ~~~~li~~~l~~~p~~Rps~~~l~~~l 261 (262)
T cd00192 235 ELYELMLSCWQLDPEDRPTFSELVERL 261 (262)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 466777799999999999999999876
No 477
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=84.22 E-value=0.99 Score=36.48 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.3
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMS 72 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~ 72 (251)
.+..+..+|++.+|..||++.++.+.|+.
T Consensus 232 ~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 232 ELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 46677889999999999999999998864
No 478
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=84.22 E-value=0.95 Score=36.73 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHHHhh
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISLMSL 73 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L~~~ 73 (251)
.+.++...|++.+|++||++.+|.+.|+.+
T Consensus 226 ~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 226 EMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 455677899999999999999999998754
No 479
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.22 E-value=2.7 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..+|..+=..|++++|+.+|.++++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555666666676778888888887777643
No 480
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.22 E-value=2.3 Score=24.70 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025537 185 ARRCLSYLMNDMPQEALGDAMQAQV 209 (251)
Q Consensus 185 ~~~a~~~~~~~~~~~A~~~~~~al~ 209 (251)
+++|.+|+.+|+++.|....+..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 481
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=84.13 E-value=0.84 Score=37.53 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVISLM 71 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~L~ 71 (251)
+..+..+|++.+|.+||++.++.+.|+
T Consensus 253 ~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 253 VYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred HHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 556778999999999999999999875
No 482
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.11 E-value=2.3 Score=28.18 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=10.1
Q ss_pred cCHHHHHHHHHHHHccC
Q 025537 160 KDFSTAIDCYTQFIDGG 176 (251)
Q Consensus 160 ~~~~~A~~~~~~al~~~ 176 (251)
+-|++|..+.++||..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34566666666666655
No 483
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=84.00 E-value=0.82 Score=36.84 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=24.8
Q ss_pred HHHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 43 TELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 43 ~~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
..+..+...|+..+|.+||++.++++.|
T Consensus 231 ~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 231 AELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred hHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 4567788899999999999999999876
No 484
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.63 E-value=5.5 Score=28.81 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=52.8
Q ss_pred HHHHHHhHHHhhcCHHHHHHHHHHHHccCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH----Hh
Q 025537 148 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA----QV 209 (251)
Q Consensus 148 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~ 209 (251)
.+...|+..++.+++-.++-+|++|+.+..+. ....-.|+|..+..+|+.+-.+.+.+-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998653210 1123578999999999999999988765 55
Q ss_pred hCCCChH
Q 025537 210 VSPDWPT 216 (251)
Q Consensus 210 ~~p~~~~ 216 (251)
+-|+.+.
T Consensus 83 LiPQCp~ 89 (140)
T PF10952_consen 83 LIPQCPN 89 (140)
T ss_pred hccCCCC
Confidence 6776543
No 485
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.59 E-value=2.7 Score=27.32 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
+..+..+|...=..|+|++|+.+|..|++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566666777778888888888877754
No 486
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.19 E-value=9.6 Score=34.70 Aligned_cols=92 Identities=9% Similarity=-0.103 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH-
Q 025537 140 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL- 218 (251)
Q Consensus 140 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~- 218 (251)
..+|.+...|...-..+-.+ -++++.+.|++.+...|. .+.+|..-....+..++|+.....|.++|...=+ .+.|
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 34566677777777766555 888888888888888887 8888888888888888888888888888764432 3333
Q ss_pred HHHHHHHHhCCCHHHH
Q 025537 219 YLQAACLFSLGMENDA 234 (251)
Q Consensus 219 ~~~g~~~~~~~~~~~A 234 (251)
..+..+....|....+
T Consensus 91 lYl~YVR~~~~~~~~~ 106 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGY 106 (656)
T ss_pred HHHHHHHHHccCcchH
Confidence 2234444444544443
No 487
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=83.15 E-value=2.7 Score=27.55 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHHHHhHHHhhcCHHHHHHHHHHHHcc
Q 025537 145 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
.|..+..+|...=..|+|++|+.+|..+|+.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3555666667777778888888888877754
No 488
>PF13041 PPR_2: PPR repeat family
Probab=82.97 E-value=7.2 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=12.0
Q ss_pred HhHHHhhcCHHHHHHHHHHHHcc
Q 025537 153 GDTAFRAKDFSTAIDCYTQFIDG 175 (251)
Q Consensus 153 g~~~~~~~~~~~A~~~~~~al~~ 175 (251)
-..+.+.|++++|.+.|++-.+.
T Consensus 10 i~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 10 ISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc
Confidence 33455555555555555555443
No 489
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.46 E-value=11 Score=28.36 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhh
Q 025537 184 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA 246 (251)
Q Consensus 184 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~P 246 (251)
......+-...++.+++.......-.+.|+.+.....-|..+...|+|++|+..|+...+-.|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 334444455588888888888888889999999999999999999999999999998765443
No 490
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.95 E-value=2.2 Score=27.95 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 025537 163 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 210 (251)
Q Consensus 163 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 210 (251)
.+|+..+.+|++.+ . .|+|++|+..|..+|..
T Consensus 4 ~~A~~l~~~Ave~d-~---------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKE-E---------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHH-H---------------HhhHHHHHHHHHHHHHH
Confidence 56777777776666 2 38888888888887763
No 491
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.81 E-value=34 Score=31.96 Aligned_cols=101 Identities=15% Similarity=-0.049 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhHHH-hhcCHHHHHHHHHHHHccCCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 025537 144 QETLNSKKHGDTAF-RAKDFSTAIDCYTQFIDGGTMV-SP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---- 213 (251)
Q Consensus 144 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 213 (251)
.++....+.|..++ ...+++.|..++++++.+.... .. .+-+-++.++.+.+... |+..++++|+..-+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 45777888888887 5789999999999998876321 11 23345678887777767 99999999887554
Q ss_pred ChHHHHHHHHH-HH-hCCCHHHHHHHHHHHHhhh
Q 025537 214 WPTALYLQAAC-LF-SLGMENDARETLKDGTNLE 245 (251)
Q Consensus 214 ~~~~~~~~g~~-~~-~~~~~~~A~~~~~~al~l~ 245 (251)
.....|++-.+ +. ..+++..|+..++.+..+.
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 22333333322 22 2379999999999887765
No 492
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=81.77 E-value=0.54 Score=39.13 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+...|+..+|..||++.++++.
T Consensus 248 ~~~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 248 LRGFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred HHHHHHHHccCChhHCcCHHHHhhC
Confidence 3345567999999999999999864
No 493
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=81.57 E-value=1 Score=36.08 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=23.1
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVISL 70 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~L 70 (251)
.+.++..+|+..+|..||++.++++.|
T Consensus 232 ~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 232 EIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred HHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 466678899999999999999998764
No 494
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=81.56 E-value=15 Score=34.24 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=46.5
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHHHHccCCCCC-HHHHHH---HHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHH
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS-PTVYAR---RCLSYLMNDMPQEALGDAMQAQVVSPD-WPTALYL 220 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~---~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 220 (251)
++...+-|..+-...-|++|.+.|++.|.+.+..+ .++|+. .....+.--..+.|...|++|++..|. +.+..|.
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYL 590 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444455555555556666666666666654322 233322 222222333456666666666665552 2332222
Q ss_pred H-HHHHHhCCCHHHHHHHHHHHH
Q 025537 221 Q-AACLFSLGMENDARETLKDGT 242 (251)
Q Consensus 221 ~-g~~~~~~~~~~~A~~~~~~al 242 (251)
+ +..-..-|--..|+..|++|-
T Consensus 591 lYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 591 LYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 333334455555666665553
No 495
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=81.53 E-value=0.65 Score=38.23 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+..+|++.+|..||++.+++..
T Consensus 238 ~~~li~~~l~~~p~~Rp~~~~l~~~ 262 (286)
T cd06622 238 AQDFVAKCLNKIPNRRPTYAQLLEH 262 (286)
T ss_pred HHHHHHHHcccCcccCCCHHHHhcC
Confidence 4556779999999999999988763
No 496
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=81.48 E-value=0.87 Score=37.96 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+...|++.+|..||++.++++.
T Consensus 247 l~~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 247 LRDFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred HHHHHHHHhcCCcccCcCHHHHhhC
Confidence 4556679999999999999999875
No 497
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=81.36 E-value=0.65 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 45 LVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 45 ~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
+..+...|++.+|..||++.+++..
T Consensus 273 l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 273 MQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred HHHHHHHHcccChhhCcCHHHHHhC
Confidence 5567779999999999999998754
No 498
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.85 E-value=4.7 Score=36.56 Aligned_cols=69 Identities=12% Similarity=-0.093 Sum_probs=54.8
Q ss_pred HHHHHHHHHhHHHhh---cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 025537 145 ETLNSKKHGDTAFRA---KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW 214 (251)
Q Consensus 145 ~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 214 (251)
...-+-+++.++++. |+.-.|+..-..|++++|. .-.+|+.++.++..++++.+|+.+...+....|.+
T Consensus 407 ~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 407 AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 344555666666653 4566788888899999997 88999999999999999999999877777777743
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.82 E-value=11 Score=35.76 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHHHHHhHHHhhcCHHHHHHHHHH------HHccC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------Hh
Q 025537 146 TLNSKKHGDTAFRAKDFSTAIDCYTQ------FIDGG----TMVSPTVYARRCLSYLMNDMPQEALGDAMQA------QV 209 (251)
Q Consensus 146 a~~~~~~g~~~~~~~~~~~A~~~~~~------al~~~----p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~ 209 (251)
.+.|-..|..+-+..+|++|+++|.+ ||++. |..-..+-...|.-+-+.|+++.|+..|-.| ++
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 44566677777788889999988764 55542 3211122233466666777777777665432 22
Q ss_pred h---CCCCh---------------HHHH-HHHHHHHhCCCHHHHHHHHHHH
Q 025537 210 V---SPDWP---------------TALY-LQAACLFSLGMENDARETLKDG 241 (251)
Q Consensus 210 ~---~p~~~---------------~~~~-~~g~~~~~~~~~~~A~~~~~~a 241 (251)
. ...|+ ..|| ..+..|...|+|+-|...|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 1 01122 2233 3467788888888888877654
No 500
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=80.71 E-value=1.3 Score=35.54 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=22.2
Q ss_pred HHHHHHhcccCcCCCCCCCHHHHHHH
Q 025537 44 ELVRLASRCLQSEARERPNAKSLVIS 69 (251)
Q Consensus 44 ~~~~va~~C~~~~p~~RP~m~~v~~~ 69 (251)
.+..+..+|++.+|++||+|.++++.
T Consensus 228 ~~~~~i~~~l~~~p~~Rp~~~~ll~~ 253 (256)
T cd08529 228 QLAQLIDQCLTKDYRQRPDTFQLLRN 253 (256)
T ss_pred HHHHHHHHHccCCcccCcCHHHHhhC
Confidence 46677789999999999999998764
Done!