BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025538
         (251 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RDJ2|ZMYM2_PONAB Zinc finger MYM-type protein 2 OS=Pongo abelii GN=ZMYM2 PE=2 SV=1
          Length = 1377

 Score = 32.3 bits (72), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 143 VFFQGISPSHYNGTEWHEPSAKSCIRQREPVLGSTYPGGLPPAVGVLKKALRKIKKPVKL 202
           VF  G S +H+N   W   SA     Q++P + S  P    P       A ++  KPVK+
Sbjct: 270 VFQNGESATHHNPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSAQQQPTKPVKV 329

Query: 203 LDITNLSLLRKDGHPSIYGLGGPTGMDCSHWCLA 236
                   L+K    + Y   G   + CS  CL+
Sbjct: 330 TCANCKKPLQKG--QTAYQRKGSAHLFCSTTCLS 361


>sp|Q0W7K1|Y2538_UNCMA UPF0219 protein UNCMA_25380 OS=Uncultured methanogenic archaeon
           RC-I GN=UNCMA_25380 PE=3 SV=1
          Length = 347

 Score = 31.2 bits (69), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 19/88 (21%)

Query: 136 INTSKSMVFFQGISPSHYNGTEWHEPSAKSCIR-------QRE--------PVLGSTYPG 180
           ++ S+ M+  QG  PS YN   +H+P+ K   R       ++E        P++G+TY G
Sbjct: 211 LSASRMMLECQGTKPSDYNYAVFHQPNGKFPTRAALTLGFKKEQLSPGLTCPMMGNTYSG 270

Query: 181 GLPPAVGVLKKALRKIKKPVKLLDITNL 208
               A  V   A+  I KP + + +T+ 
Sbjct: 271 ----ASMVGLSAVLDIAKPGERIFVTSF 294


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,346,728
Number of Sequences: 539616
Number of extensions: 4227161
Number of successful extensions: 9053
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9049
Number of HSP's gapped (non-prelim): 9
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)