Query 025539
Match_columns 251
No_of_seqs 165 out of 757
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 3.9E-51 8.4E-56 371.2 19.2 231 2-251 3-233 (300)
2 KOG2922 Uncharacterized conser 100.0 5.2E-52 1.1E-56 371.5 8.8 232 1-251 16-247 (335)
3 PRK02971 4-amino-4-deoxy-L-ara 99.2 1.7E-10 3.7E-15 92.9 10.6 116 7-127 3-122 (129)
4 PRK15051 4-amino-4-deoxy-L-ara 99.0 1.3E-08 2.9E-13 79.8 11.9 102 10-126 5-108 (111)
5 PF13536 EmrE: Multidrug resis 98.6 5.5E-07 1.2E-11 70.2 10.5 68 61-129 41-108 (113)
6 COG2510 Predicted membrane pro 98.6 1.5E-07 3.3E-12 75.2 7.1 117 9-126 6-138 (140)
7 PF10639 UPF0546: Uncharacteri 98.4 3E-07 6.5E-12 72.3 5.0 79 48-126 34-113 (113)
8 PRK10452 multidrug efflux syst 98.3 1.3E-05 2.7E-10 63.9 11.8 73 58-130 33-106 (120)
9 PRK09541 emrE multidrug efflux 98.1 8.8E-05 1.9E-09 58.1 11.8 98 11-130 7-106 (110)
10 PF04142 Nuc_sug_transp: Nucle 98.0 8.1E-05 1.8E-09 66.1 12.5 70 63-132 25-94 (244)
11 PRK10532 threonine and homoser 98.0 7.5E-05 1.6E-09 67.4 12.2 128 5-133 147-287 (293)
12 PF00892 EamA: EamA-like trans 97.9 7.5E-05 1.6E-09 57.3 9.2 69 58-126 57-125 (126)
13 TIGR03340 phn_DUF6 phosphonate 97.9 0.00016 3.4E-09 64.8 12.1 118 8-127 3-135 (281)
14 PF00893 Multi_Drug_Res: Small 97.8 0.00022 4.8E-09 54.0 9.3 86 11-118 6-93 (93)
15 TIGR00950 2A78 Carboxylate/Ami 97.7 0.00056 1.2E-08 59.8 11.9 119 4-122 126-259 (260)
16 PF06027 DUF914: Eukaryotic pr 97.7 0.00035 7.6E-09 64.8 10.7 80 50-129 72-153 (334)
17 PRK10650 multidrug efflux syst 97.7 0.0013 2.9E-08 51.4 12.2 95 9-125 10-106 (109)
18 PLN00411 nodulin MtN21 family 97.6 0.00068 1.5E-08 63.5 11.6 122 4-127 187-328 (358)
19 PRK15430 putative chlorampheni 97.6 0.00079 1.7E-08 60.9 11.1 125 1-126 3-144 (296)
20 PRK11272 putative DMT superfam 97.5 0.00088 1.9E-08 60.4 10.5 122 5-127 149-285 (292)
21 TIGR00950 2A78 Carboxylate/Ami 97.5 0.00098 2.1E-08 58.3 10.2 69 59-127 51-119 (260)
22 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.0017 3.7E-08 58.8 11.9 73 56-128 57-137 (290)
23 PRK11689 aromatic amino acid e 97.4 0.0017 3.7E-08 58.6 11.5 119 5-126 155-286 (295)
24 COG2076 EmrE Membrane transpor 97.4 0.003 6.4E-08 49.2 11.1 71 55-125 29-101 (106)
25 PRK11431 multidrug efflux syst 97.3 0.0048 1E-07 48.0 11.2 71 55-125 28-100 (105)
26 PF08449 UAA: UAA transporter 97.3 0.018 4E-07 52.2 16.4 78 56-134 66-143 (303)
27 TIGR03340 phn_DUF6 phosphonate 97.2 0.00041 8.9E-09 62.1 5.0 64 61-124 217-280 (281)
28 PRK11453 O-acetylserine/cystei 97.2 0.0047 1E-07 55.8 11.7 121 6-126 143-286 (299)
29 PRK11453 O-acetylserine/cystei 97.1 0.0053 1.1E-07 55.5 11.0 58 70-127 74-132 (299)
30 TIGR00817 tpt Tpt phosphate/ph 97.1 0.0049 1.1E-07 55.6 10.6 66 59-125 70-135 (302)
31 COG0697 RhaT Permeases of the 97.0 0.0099 2.2E-07 51.9 11.7 73 60-132 75-148 (292)
32 TIGR00688 rarD rarD protein. T 97.0 0.012 2.7E-07 51.7 12.0 63 65-127 80-142 (256)
33 COG0697 RhaT Permeases of the 96.8 0.005 1.1E-07 53.8 7.9 123 5-128 153-288 (292)
34 PRK15430 putative chlorampheni 96.8 0.0047 1E-07 55.8 7.8 64 66-129 224-287 (296)
35 PTZ00343 triose or hexose phos 96.7 0.013 2.8E-07 54.5 10.1 70 56-126 116-185 (350)
36 PF06800 Sugar_transport: Suga 96.5 0.053 1.2E-06 48.9 12.1 79 56-134 43-129 (269)
37 PRK11689 aromatic amino acid e 96.4 0.039 8.6E-07 49.7 10.9 67 61-127 67-137 (295)
38 KOG4510 Permease of the drug/m 96.4 0.006 1.3E-07 54.9 5.3 69 67-135 109-181 (346)
39 TIGR00776 RhaT RhaT L-rhamnose 96.1 0.018 3.9E-07 52.1 7.2 116 5-127 151-288 (290)
40 PRK11272 putative DMT superfam 96.1 0.23 4.9E-06 44.7 14.3 66 60-126 74-140 (292)
41 KOG2765 Predicted membrane pro 96.0 0.052 1.1E-06 51.0 9.6 83 74-156 178-265 (416)
42 KOG2234 Predicted UDP-galactos 95.9 0.067 1.5E-06 49.7 10.0 68 60-127 97-164 (345)
43 PF03151 TPT: Triose-phosphate 95.9 0.097 2.1E-06 41.9 9.8 116 7-124 1-150 (153)
44 KOG3912 Predicted integral mem 95.4 0.15 3.2E-06 46.5 9.7 69 60-128 91-159 (372)
45 PLN00411 nodulin MtN21 family 94.9 0.1 2.3E-06 48.8 7.9 59 69-127 92-156 (358)
46 PF06027 DUF914: Eukaryotic pr 94.6 0.27 5.8E-06 45.8 9.6 127 3-133 165-311 (334)
47 TIGR00817 tpt Tpt phosphate/ph 94.4 0.063 1.4E-06 48.4 4.9 58 70-127 236-293 (302)
48 PF06800 Sugar_transport: Suga 94.2 0.11 2.4E-06 46.8 6.1 66 58-124 199-268 (269)
49 KOG4831 Unnamed protein [Funct 93.7 0.068 1.5E-06 41.6 3.1 78 49-126 46-124 (125)
50 COG3169 Uncharacterized protei 93.6 1.3 2.8E-05 34.1 9.8 106 1-125 5-113 (116)
51 COG2962 RarD Predicted permeas 93.6 1.2 2.7E-05 40.5 11.4 83 49-131 62-148 (293)
52 TIGR00803 nst UDP-galactose tr 93.5 0.34 7.3E-06 41.7 7.6 118 4-123 83-220 (222)
53 PRK13499 rhamnose-proton sympo 91.9 0.83 1.8E-05 42.7 8.2 129 3-133 4-159 (345)
54 PRK10532 threonine and homoser 91.9 5.7 0.00012 35.6 13.6 116 5-127 11-137 (293)
55 COG5006 rhtA Threonine/homoser 90.3 1.2 2.5E-05 40.1 7.2 125 4-131 146-286 (292)
56 COG1742 Uncharacterized conser 89.9 1.9 4.1E-05 33.4 7.1 48 83-131 60-107 (109)
57 KOG1583 UDP-N-acetylglucosamin 88.9 0.88 1.9E-05 41.4 5.4 78 56-133 65-143 (330)
58 PF08449 UAA: UAA transporter 88.1 2.9 6.3E-05 37.7 8.4 124 4-127 152-297 (303)
59 PRK02237 hypothetical protein; 88.0 3.5 7.6E-05 32.2 7.5 48 83-131 61-108 (109)
60 PTZ00343 triose or hexose phos 87.2 2.5 5.3E-05 39.3 7.5 52 74-125 295-346 (350)
61 PF02694 UPF0060: Uncharacteri 86.8 2.4 5.1E-05 33.0 5.9 47 83-130 59-105 (107)
62 PF04342 DUF486: Protein of un 85.7 6.2 0.00013 30.7 7.7 94 8-124 4-105 (108)
63 PF04657 DUF606: Protein of un 85.3 15 0.00032 29.7 10.3 66 59-124 68-138 (138)
64 KOG1441 Glucose-6-phosphate/ph 79.1 1.2 2.5E-05 41.3 1.8 76 51-127 80-155 (316)
65 PRK13499 rhamnose-proton sympo 77.4 27 0.00059 32.7 10.4 42 85-127 293-341 (345)
66 PF04142 Nuc_sug_transp: Nucle 73.2 51 0.0011 29.1 10.6 110 4-117 112-243 (244)
67 KOG1581 UDP-galactose transpor 69.5 43 0.00093 31.0 9.3 73 59-132 88-160 (327)
68 KOG1583 UDP-N-acetylglucosamin 65.0 24 0.00052 32.3 6.7 39 93-131 280-318 (330)
69 KOG2766 Predicted membrane pro 63.7 2.3 4.9E-05 38.5 -0.0 56 74-129 97-152 (336)
70 KOG4510 Permease of the drug/m 61.3 3.6 7.8E-05 37.5 0.8 78 49-127 245-325 (346)
71 COG4975 GlcU Putative glucose 59.7 5 0.00011 36.1 1.4 67 60-127 215-285 (288)
72 KOG1580 UDP-galactose transpor 59.6 12 0.00026 33.6 3.7 40 92-131 278-317 (337)
73 PF05653 Mg_trans_NIPA: Magnes 56.7 22 0.00047 32.5 5.1 77 52-128 206-293 (300)
74 PF04211 MtrC: Tetrahydrometha 55.0 1.6E+02 0.0035 26.5 12.3 135 60-205 75-217 (262)
75 KOG2765 Predicted membrane pro 49.4 95 0.0021 29.7 8.0 124 5-129 246-392 (416)
76 PF07857 DUF1632: CEO family ( 49.2 1E+02 0.0023 27.6 8.1 62 186-248 180-243 (254)
77 PF06570 DUF1129: Protein of u 47.5 1.2E+02 0.0027 25.8 8.1 56 55-110 143-204 (206)
78 COG4858 Uncharacterized membra 47.2 1.1E+02 0.0024 26.5 7.4 91 5-111 124-220 (226)
79 COG5522 Predicted integral mem 47.1 1.7E+02 0.0036 25.7 8.6 96 55-152 91-204 (236)
80 PF12263 DUF3611: Protein of u 44.7 1.4E+02 0.003 25.5 7.8 22 80-101 145-168 (183)
81 COG4975 GlcU Putative glucose 43.9 12 0.00025 33.8 1.2 78 53-130 54-139 (288)
82 KOG4314 Predicted carbohydrate 40.3 41 0.00088 29.5 3.9 61 69-129 67-127 (290)
83 PRK01030 tetrahydromethanopter 38.2 3E+02 0.0066 24.8 10.6 139 60-209 68-214 (264)
84 TIGR01148 mtrC N5-methyltetrah 36.4 3.3E+02 0.0071 24.6 10.2 140 60-210 75-221 (265)
85 COG2814 AraJ Arabinose efflux 35.8 4E+02 0.0087 25.5 11.7 104 52-159 75-222 (394)
86 KOG1442 GDP-fucose transporter 35.7 18 0.00038 33.2 1.0 58 66-123 113-170 (347)
87 PF05106 Phage_holin_3: Phage 35.6 92 0.002 23.7 4.9 58 133-204 3-60 (100)
88 COG2855 Predicted membrane pro 33.1 1.9E+02 0.0041 27.1 7.3 80 51-131 65-145 (334)
89 COG5006 rhtA Threonine/homoser 29.9 3.4E+02 0.0074 24.7 8.1 81 68-155 84-165 (292)
90 PF08173 YbgT_YccB: Membrane b 29.9 77 0.0017 18.7 2.7 20 3-22 5-24 (28)
91 PRK15403 multidrug efflux syst 28.9 3.5E+02 0.0075 25.1 8.6 35 50-84 212-246 (413)
92 PF01925 TauE: Sulfite exporte 28.8 3.6E+02 0.0078 22.8 9.2 32 80-111 32-65 (240)
93 TIGR02106 cyd_oper_ybgT cyd op 28.7 79 0.0017 19.0 2.7 21 3-23 5-25 (30)
94 PF11137 DUF2909: Protein of u 26.8 2.3E+02 0.005 19.9 6.7 53 1-72 1-53 (63)
95 PF04531 Phage_holin_1: Bacter 26.7 2.5E+02 0.0054 20.6 5.8 16 53-68 8-23 (84)
96 PF10856 DUF2678: Protein of u 26.1 1.1E+02 0.0024 24.3 3.8 12 162-173 76-87 (118)
97 COG2962 RarD Predicted permeas 24.4 3E+02 0.0065 25.3 6.9 55 73-127 229-283 (293)
98 KOG1443 Predicted integral mem 24.1 50 0.0011 30.7 1.8 56 73-128 102-157 (349)
99 COG4512 AgrB Membrane protein 24.1 3.7E+02 0.0081 23.0 6.9 69 91-161 88-158 (198)
100 COG2991 Uncharacterized protei 24.0 79 0.0017 23.0 2.5 30 1-30 1-30 (77)
101 PF07168 Ureide_permease: Urei 23.3 12 0.00026 34.6 -2.3 64 60-124 77-143 (336)
102 PF05814 DUF843: Baculovirus p 22.9 2.2E+02 0.0047 21.2 4.7 31 220-250 18-48 (83)
103 PRK14995 methyl viologen resis 22.5 3.8E+02 0.0083 25.5 7.8 74 50-125 253-342 (495)
104 TIGR03042 PS_II_psbQ_bact phot 21.8 1.3E+02 0.0027 24.7 3.6 34 110-143 2-37 (142)
105 TIGR00688 rarD rarD protein. T 21.5 2.4E+02 0.0052 24.3 5.7 38 65-102 218-255 (256)
106 COG3238 Uncharacterized protei 21.2 3.5E+02 0.0076 22.3 6.2 35 91-125 106-144 (150)
107 PRK14749 hypothetical protein; 20.3 2.1E+02 0.0046 17.1 3.3 21 3-23 5-25 (30)
108 KOG1580 UDP-galactose transpor 20.3 1E+02 0.0022 27.8 3.0 37 94-130 124-160 (337)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.9e-51 Score=371.17 Aligned_cols=231 Identities=29% Similarity=0.517 Sum_probs=206.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 025539 2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ 81 (251)
Q Consensus 2 ~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~ 81 (251)
.+|++|+.++++||+++++|.++||++|.|+++.+.++ ....++|++||+||.|+.++++|+++++.||+|||+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~ 76 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------GSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA 76 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------cchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence 36789999999999999999999999999987633221 123578999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhhchhHHHHHHHHHHHH
Q 025539 82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV 161 (251)
Q Consensus 82 slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~~~~fi~y~~~~~~~~ 161 (251)
++|+|++++++++|++++++++|||++++|++|++++++|+++++.++|++++.+|++|+.+++++|.|+.|+.+..++.
T Consensus 77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~ 156 (300)
T PF05653_consen 77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI 156 (300)
T ss_pred HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876655
Q ss_pred HHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHH
Q 025539 162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241 (251)
Q Consensus 162 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~g~~~~~~~~~y~ll~~~~~~~ 241 (251)
+.+++..+++. |++ ..+.|..+||++|++|++++|++++.++++++|+|||.||.+|++++++++++
T Consensus 157 ~~L~~~~~~r~------g~~-------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~ 223 (300)
T PF05653_consen 157 LILIFFIKPRY------GRR-------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA 223 (300)
T ss_pred HHHHHhhcchh------ccc-------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence 54433333210 111 26889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcC
Q 025539 242 GFWVKIIKEL 251 (251)
Q Consensus 242 ~~Ql~~LNka 251 (251)
+.|++|||||
T Consensus 224 ~~Q~~~LN~a 233 (300)
T PF05653_consen 224 VLQLYYLNKA 233 (300)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-52 Score=371.52 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=214.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 025539 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA 80 (251)
Q Consensus 1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap 80 (251)
+++|++|+.+++.||++++.+.++|||+|+|.+....++. ....+|++.|+||+|++.|++|++.||.||+|||
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~------~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP 89 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAG------EGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAP 89 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhccccc------CCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence 4688999999999999999999999999999887544332 2357889999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhhchhHHHHHHHHHHH
Q 025539 81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI 160 (251)
Q Consensus 81 ~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~~~~fi~y~~~~~~~ 160 (251)
+++|+|||++|+++|+++|++++||+++..+.+||.++++|.+++|.|+|++++..|++|+++++++|+|++|..+.+.+
T Consensus 90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~ 169 (335)
T KOG2922|consen 90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI 169 (335)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH
Q 025539 161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240 (251)
Q Consensus 161 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~g~~~~~~~~~y~ll~~~~~~ 240 (251)
++++++.++.++ ||+| .++|..+|+++|++||+++|+++++++++++|+||+.+|++|+++++++.|
T Consensus 170 ~~il~~~~~p~~------g~tn-------ilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~ 236 (335)
T KOG2922|consen 170 VLILIFFYAPRY------GQTN-------ILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC 236 (335)
T ss_pred HHHHheeecccc------cccc-------eeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 877665555432 2344 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 025539 241 AGFWVKIIKEL 251 (251)
Q Consensus 241 ~~~Ql~~LNka 251 (251)
+.+|++|||||
T Consensus 237 ~~~Q~~yLNkA 247 (335)
T KOG2922|consen 237 VSTQMNYLNKA 247 (335)
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.19 E-value=1.7e-10 Score=92.85 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchh--hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 025539 7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSLL 84 (251)
Q Consensus 7 Gi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~w~~G~~~~~~g~~~~~~Al~~ap~slv 84 (251)
|..+.+.+.++.+.||.+.|++..+.++.+. +. ..-.......+| .-+.|+.+++++.++|..++...|+++.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~-~~----~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~A 77 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSH-AW----DFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRA 77 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccc-hh----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 6678899999999999999999876532110 00 000011234567 7789999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHH--HhccccchhhhhHHHHHHhhhhhhee
Q 025539 85 AALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 85 ~Pl~~~~lv~~~~~a~~--~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
.|+-+...+...+.+.. ++||+++..+++|+.++++|+.++..
T Consensus 78 yp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 78 YPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999998888888885 79999999999999999999998764
No 4
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.96 E-value=1.3e-08 Score=79.77 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHhh
Q 025539 10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL 87 (251)
Q Consensus 10 lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~--~~~~~g~~~~~~Al~~ap~slv~Pl 87 (251)
.-+++.++-+.|+.+.|++..+.. + +. ...++..+.+. ..++++..++..++...|+++.+|+
T Consensus 5 ~l~~ai~~ev~g~~~lK~s~~~~~-----~-----~~-----~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~ 69 (111)
T PRK15051 5 TLVFASLLSVAGQLCQKQATRPVA-----I-----GK-----RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-----c-----ch-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence 456677888889999998733210 0 00 01123345555 6678899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
-+++++++.+++.+++|||++.++++|..++++|++++.
T Consensus 70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998774
No 5
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.60 E-value=5.5e-07 Score=70.24 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 61 G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
|......+..+.+.|+.++| ..++|+.+++.+++.+++..++|||++++++.|++++.+|++++....
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44444578888999999999 599999999999999999999999999999999999999999886533
No 6
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.59 E-value=1.5e-07 Score=75.17 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccc-c-cCCC----------CCCCCCccccccchhhHH----HHHHHHHHHHHHH
Q 025539 9 FINLVGSIAINFGTNLLKLGHIEREKHS-T-LDSD----------GTNGKHSLKPIVHYHSWR----VGILVFLLGNCLN 72 (251)
Q Consensus 9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~p~w~----~G~~~~~~g~~~~ 72 (251)
+.++.++++-+++..+-|.+.......- + .++- -..++.+...-...+.|. .| ...+++-++-
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~Y 84 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHHH
Confidence 6889999999999999998754221100 0 0000 000000111112223342 33 3456777777
Q ss_pred HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
|.|+.-+++|.|+|+..+|.++.+++|..++|||++..+++|+.++++|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 899999999999999999999999999999999999999999999999998764
No 7
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.44 E-value=3e-07 Score=72.29 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=71.7
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 48 SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 48 ~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~-~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
+.+..++||+.++++.+.-.|++..+..++-+|+|+..|+. +++++++++.++++.+|..++++++|+.+++.|+.+++
T Consensus 34 ~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 34 EIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 34568999999999999999999999999999999999995 99999999999777777778888999999999998753
No 8
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.32 E-value=1.3e-05 Score=63.87 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539 58 WRVGILVFLLGNCLNFISFGYAAQSLLAAL-GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (251)
Q Consensus 58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~ 130 (251)
|+..+.+++++..+...|+...|+++.+|+ .+++.+...+.+.+++||+++..+++|..++++|++.+-..++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 566677788888888999999999999999 5799999999999999999999999999999999988755444
No 9
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.08 E-value=8.8e-05 Score=58.14 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhh-h
Q 025539 11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSW-RVGILVFLLGNCLNFISFGYAAQSLLAAL-G 88 (251)
Q Consensus 11 al~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w-~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-~ 88 (251)
-+++.++=..|....|++.. +++|.| +..+..|+++..+...|+...|.++.+|. .
T Consensus 7 L~~a~~~Ev~~~~~lK~s~g----------------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~ 64 (110)
T PRK09541 7 LGGAILAEVIGTTLMKFSEG----------------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWS 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHhcC----------------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 34456666667777765421 123444 34555677777777889999999999999 5
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539 89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (251)
Q Consensus 89 ~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~ 130 (251)
+++.+...+.+.+++||+++..+++|..++++|++.+-..++
T Consensus 65 GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 699999999999999999999999999999999998855443
No 10
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.05 E-value=8.1e-05 Score=66.06 Aligned_cols=70 Identities=17% Similarity=0.368 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539 63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (251)
Q Consensus 63 ~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~ 132 (251)
.+|.+.+.+.+.++...+.+.-+=+...-++++++++.+++|+|+++++|++..+.++|++++-..+..+
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 6799999999999999999999999999999999999999999999999999999999998876544443
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.03 E-value=7.5e-05 Score=67.44 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---------CCCCCCccccccchh----hHHHHHHHHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---------GTNGKHSLKPIVHYH----SWRVGILVFLLGNCL 71 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~p----~w~~G~~~~~~g~~~ 71 (251)
.+|.++++.++++.+.+..+.|+...+.+.... .-. +.............. .++.|+...+++..+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999998865322111000 000 000000000011111 245667667788888
Q ss_pred HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS 133 (251)
Q Consensus 72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~ 133 (251)
++.++...|.+.++++..+.-+++.+++.+++||+++..+++|..+++.|+.......++++
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999999999999999999999999999999999988866555533
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.95 E-value=7.5e-05 Score=57.29 Aligned_cols=69 Identities=16% Similarity=0.325 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
...|....+++..+.+.++...|.+.++++..++-+++.+++..++||+++++++.|..+++.|+.++.
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345554457889999999999999999999999999999999999999999999999999999998764
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.92 E-value=0.00016 Score=64.81 Aligned_cols=118 Identities=8% Similarity=-0.055 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---------CC---CCCCccccccchhhH---HHHHHHHHHHHHHH
Q 025539 8 AFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---------GT---NGKHSLKPIVHYHSW---RVGILVFLLGNCLN 72 (251)
Q Consensus 8 i~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~p~w---~~G~~~~~~g~~~~ 72 (251)
..+.+.++++.|..+.+.|+...++.. ..+-. +. .......+..++..| ..+.........+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999854333211 00000 00 000001111112222 12233344566666
Q ss_pred HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
+.++...|.+..+|+...+-++..+++.+++|||++++++.|..++..|+.++..
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999987753
No 14
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.80 E-value=0.00022 Score=53.98 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHhhh-
Q 025539 11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGIL-VFLLGNCLNFISFGYAAQSLLAALG- 88 (251)
Q Consensus 11 al~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~-~~~~g~~~~~~Al~~ap~slv~Pl~- 88 (251)
-+.+.++-..|+...|.++.. +++.|..+.. .++++..+...|+...|.++..|+=
T Consensus 6 L~~a~~~ev~~~~~lK~s~g~----------------------~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~ 63 (93)
T PF00893_consen 6 LLLAILFEVVGTIALKASHGF----------------------TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWT 63 (93)
T ss_dssp HHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------------cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 345556677788888753321 2344444443 5778888888899999999999975
Q ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHH
Q 025539 89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFI 118 (251)
Q Consensus 89 ~~~lv~~~~~a~~~l~E~~~~~~~~g~~li 118 (251)
+++.+...+.+.+++||+++..++.|..++
T Consensus 64 g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 64 GLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 599999999999999999999999998875
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.71 E-value=0.00056 Score=59.82 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-C-CC---------CCCCCCccccccchhhH----HHHHHHHHHH
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-D-SD---------GTNGKHSLKPIVHYHSW----RVGILVFLLG 68 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-~-~~---------~~~~~~~~~~~~~~p~w----~~G~~~~~~g 68 (251)
...|..++++++++.+....++|+...+.+..... . -. +........+....+.| ..|....+++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999875332100000 0 00 00000000001122233 2444445678
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhh
Q 025539 69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN 122 (251)
Q Consensus 69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~ 122 (251)
..+++.++...|.+.++.+..+.-+++.+++.+++||+++..++.|+.+++.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999886
No 16
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.69 E-value=0.00035 Score=64.82 Aligned_cols=80 Identities=11% Similarity=0.233 Sum_probs=67.3
Q ss_pred ccccchhhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 50 KPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 50 ~~~~~~p~w~~G~--~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
.+..++|.|.-=+ ++.+.|+.+...||.+-+.+-++=|...+++++++++.+++|||.++.+++|+++++.|+++++.
T Consensus 72 ~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 72 LKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 3445666654322 24567888888999999999999999999999999999999999999999999999999988765
Q ss_pred cc
Q 025539 128 FG 129 (251)
Q Consensus 128 ~~ 129 (251)
..
T Consensus 152 sD 153 (334)
T PF06027_consen 152 SD 153 (334)
T ss_pred ec
Confidence 43
No 17
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.68 E-value=0.0013 Score=51.45 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHH-HHHHHHHHHHHHhhhhHHHHHhh
Q 025539 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV-FLLGNCLNFISFGYAAQSLLAAL 87 (251)
Q Consensus 9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~-~~~g~~~~~~Al~~ap~slv~Pl 87 (251)
..-+++.++=..|....|+++. +++|.|...+.. ++++..+-..|+...|.++.+|.
T Consensus 10 ~~L~~Ai~~Ev~~t~~Lk~s~g----------------------f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAv 67 (109)
T PRK10650 10 AWLALAIVLEIVANIFLKFSDG----------------------FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYAL 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----------------------CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 3445566666677777764421 234555444433 44555555678999999999998
Q ss_pred hh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 88 GS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 88 ~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
=+ ++.+...+.+.+++||+++..++.|..+++.|++.+
T Consensus 68 W~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 68 WGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 76 889999999999999999999999999999999865
No 18
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.62 E-value=0.00068 Score=63.45 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-CC-------------CCCCCCcccccc--chhhHHHHHH----
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SD-------------GTNGKHSLKPIV--HYHSWRVGIL---- 63 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~--~~p~w~~G~~---- 63 (251)
+.+|..+++.++++-+++..+||+-..+-.....-. -. -.++ .+..... .++ +...++
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~i~y~~i 264 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK-NNPSVWIIHFDI-TLITIVTMAI 264 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc-CCcccceeccch-HHHHHHHHHH
Confidence 577999999999999999999987543321100000 00 0000 0000000 011 111221
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
...+++.+|..+....+.+.++...-+.=+++++++..+++|+++..+++|.++++.|+.+...
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1234677778899999999999999999999999999999999999999999999999988754
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.57 E-value=0.00079 Score=60.85 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---C---------CCC-CCccccccchhhH----HHHHH
Q 025539 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---G---------TNG-KHSLKPIVHYHSW----RVGIL 63 (251)
Q Consensus 1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---~---------~~~-~~~~~~~~~~p~w----~~G~~ 63 (251)
|+....|..+.++++++.+....+-|... +-+..+..--+ + .++ ....++..+++++ ..|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 56667899999999999988888887531 10000000000 0 000 0000111122222 24555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
.+++...+.+.++...|.+...-+..+.=++.++++.+++|||++++++.|.++..+|+.++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 566788888999999999999999999999999999999999999999999999999998875
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.51 E-value=0.00088 Score=60.36 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-cC---C-C------CCCCCCccccccchhhHH----HHHHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHST-LD---S-D------GTNGKHSLKPIVHYHSWR----VGILVFLLGN 69 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~-~~---~-~------~~~~~~~~~~~~~~p~w~----~G~~~~~~g~ 69 (251)
..|..+++.++++.|.+...+|+...+...... -. . . ...+. ..........|+ .|....+++.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999875422110000 00 0 0 00000 000000112232 3444455778
Q ss_pred HHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 70 ~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
.++..++...|.+.+..+..+.-+++++++.+++||+++..+++|..+++.|+.+...
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999987744
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.49 E-value=0.00098 Score=58.27 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
..|.....+...+.+.|+.+.|.+..+++..+.=+++.+++..++|||++++++.|..+.++|+.++..
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 455555677888888999999999999999999999999999999999999999999999999988764
No 22
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.48 E-value=0.0017 Score=58.79 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=65.5
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhh----hhHHHHHHhhhhhhee
Q 025539 56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVS 127 (251)
Q Consensus 56 p~w~~G~~~---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~----~~g~~li~~G~~l~v~ 127 (251)
..|..|+.. .+.|++..+.|.....+++-.|+.. ++++++.+.+.+++||+.++++ +.|.+++++|+.++..
T Consensus 57 ~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~ 136 (290)
T TIGR00776 57 SIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSR 136 (290)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEe
Confidence 455557766 8899999999999999999999999 8999999999999999999999 9999999999887755
Q ss_pred c
Q 025539 128 F 128 (251)
Q Consensus 128 ~ 128 (251)
.
T Consensus 137 ~ 137 (290)
T TIGR00776 137 S 137 (290)
T ss_pred c
Confidence 4
No 23
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.45 E-value=0.0017 Score=58.63 Aligned_cols=119 Identities=8% Similarity=0.029 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC-C--------CCCCCCccccccchhhH----HHHHHHHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-D--------GTNGKHSLKPIVHYHSW----RVGILVFLLGNCL 71 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~p~w----~~G~~~~~~g~~~ 71 (251)
..|..+++.++++.+.+.++.|+-..+.+.....-- . ..++. ... ......| ..| ...++++.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~l~~~~-~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ-PAM-VFSLPAIIKLLLAA-AAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC-ccc-cCCHHHHHHHHHHH-HHHHHHHHH
Confidence 458999999999999999999874322110000000 0 00000 000 0111122 223 234567888
Q ss_pred HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
+..++...|.+.++++..+.-+++++++..++||+++..+++|.++++.|+.+..
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 8899999999999999999999999999999999999999999999999997764
No 24
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.003 Score=49.15 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=58.9
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 55 YHSWRVGIL-VFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 55 ~p~w~~G~~-~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
|+.|.+.+. .++++..+-..|+...|.++.+++=+ ++.+..++.+..++||+++..+++|..++++|++.+
T Consensus 29 ~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 29 RLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 345555443 35566666667999999999999855 899999999999999999999999999999999876
No 25
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.33 E-value=0.0048 Score=47.96 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=59.6
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 55 YHSWRVGI-LVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 55 ~p~w~~G~-~~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
++.|.... ..++++..+-..|+...|.++.+++=+ ++.+...+.+.+++||+++..+++|..+++.|++.+
T Consensus 28 ~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 28 RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 34444433 445666666677999999999999877 999999999999999999999999999999999876
No 26
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.29 E-value=0.018 Score=52.16 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCC
Q 025539 56 HSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSP 134 (251)
Q Consensus 56 p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~ 134 (251)
+.+..+. ++.++..++..|+.+.|...-.=+.+...++.++++.+++|+|.++++++++.++++|++++.....++++
T Consensus 66 ~~~~~~~-~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 66 KYAILSF-LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 3444554 67788899999999999999999999999999999999999999999999999999999998876655443
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.24 E-value=0.00041 Score=62.12 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539 61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (251)
Q Consensus 61 G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l 124 (251)
+....++++.+++.++...|++.++++..++-+++.+++.+++||+++..+++|.+++++|+.+
T Consensus 217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3344557888888999999999999999999999999999999999999999999999999875
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.22 E-value=0.0047 Score=55.84 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-C--------CC-------CCCCCccccc--cchhh-HH----HHH
Q 025539 6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-S--------DG-------TNGKHSLKPI--VHYHS-WR----VGI 62 (251)
Q Consensus 6 iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-~--------~~-------~~~~~~~~~~--~~~p~-w~----~G~ 62 (251)
.|..+++.++++.+.+..++|+...+.+...... . -+ .++.+..... -.++. |+ .|+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 6999999999999999999997532211100000 0 00 0000000000 01122 22 344
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 63 LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 63 ~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
+..++++.+++.++...+...++++..+.=+++.+++.+++||+++..+++|..++++|+.+..
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 4455677777778888889999999999999999999999999999999999999999998664
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.12 E-value=0.0053 Score=55.48 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=49.0
Q ss_pred HHHHHHHhh-hhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 70 CLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 70 ~~~~~Al~~-ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
.+.+.++.. .|.+..+-+..+.-++..+++++++|||++++++.|.++..+|+.++..
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 344566666 4777777788888899999999999999999999999999999987763
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.10 E-value=0.0049 Score=55.59 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
..|+. +.+...++..++.+.+.+..+-+.+++-++.++++.+++|||++++++.|..+.++|+.+.
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 45554 5677888889999999999999999999999999999999999999999999999999764
No 31
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.04 E-value=0.0099 Score=51.92 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHH-HHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539 60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~-~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~ 132 (251)
.|......+..+.+.++...|.+..+++.+.+-++..+++. +++|||++++++.|..+...|+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 44445567778888999999999999999999999999997 66799999999999999999998887655543
No 32
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.01 E-value=0.012 Score=51.66 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 65 ~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
++.+..+.+.|+...|.+..+-+..++=++.++++++++|||++++++.|..+..+|+.++..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 556778888999999999999999999999999999999999999999999999999987653
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.82 E-value=0.005 Score=53.80 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-----CC-----CCCCCCccccc-cchhhH--HHHHHHHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-----SD-----GTNGKHSLKPI-VHYHSW--RVGILVFLLGNCL 71 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~-~~~p~w--~~G~~~~~~g~~~ 71 (251)
..|+.+++.+++..+.....+|+-. +.......- .. .....+...+. .+.... ..|+...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998543 111000000 00 00000000011 111111 2344444467888
Q ss_pred HHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheec
Q 025539 72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (251)
Q Consensus 72 ~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~ 128 (251)
++.++...|.+.++|+..+..+++.+++..+++|+++..++.|+++++.|+.+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999877543
No 34
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.80 E-value=0.0047 Score=55.77 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
.++..+++.++...|.+.++++.-+.-+++.+++.++++|+++...+.|.++++.|+.++...+
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999999999999999999999999999999999988776433
No 35
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.71 E-value=0.013 Score=54.50 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 56 HSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 56 p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
+....|+. ...+......++.+.+.+..+=+.+++=++.++++++++|||++++.+.+.+++++|+.+..
T Consensus 116 ~llp~gl~-~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 116 NFLPQGLC-HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34445552 23345566689999999999999999999999999999999999999999999999999875
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.49 E-value=0.053 Score=48.90 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=65.5
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHhhh-hhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhhhee
Q 025539 56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLVS 127 (251)
Q Consensus 56 p~w~~G~~~---~~~g~~~~~~Al~~ap~slv~Pl~-~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l~v~ 127 (251)
..|+.+++. -.+|++.++.++.....|.-.|+. +..++.|.+++.++++|--+..++ .+.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 467777644 468999999999999999999999 589999999999999998877764 478889999988777
Q ss_pred ccCCCCC
Q 025539 128 FGNHQSP 134 (251)
Q Consensus 128 ~~~~~~~ 134 (251)
..+++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6655543
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.39 E-value=0.039 Score=49.74 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhh----hhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 61 GILVFLLGNCLNFISFGY----AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 61 G~~~~~~g~~~~~~Al~~----ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
|...+.....+.+.++.+ .|.+..+-+..+.=++..+++..++|||++++++.|+.+..+|+.++..
T Consensus 67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 333343444445555544 3555666677788899999999999999999999999999999988764
No 38
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.38 E-value=0.006 Score=54.94 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe----eccCCCCCC
Q 025539 67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV----SFGNHQSPV 135 (251)
Q Consensus 67 ~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v----~~~~~~~~~ 135 (251)
.|-.+.+.||.+.|++=-.=+.-.+=++..++|..+||||.+..|.+|+.....|+++++ .||.++++.
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE 181 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence 556667788888888766556666778999999999999999999999999999999997 577665543
No 39
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.12 E-value=0.018 Score=52.11 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC---CC------C---CCCC-ccccccchhhHH----HHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---DG------T---NGKH-SLKPIVHYHSWR----VGILVFLL 67 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~---~~------~---~~~~-~~~~~~~~p~w~----~G~~~~~~ 67 (251)
..|+..++++++..+.-...-|..+.+ ..+. .. . .... ..++. .++.+| .|.. .++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFGVD-----GLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCC-----cceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHH
Confidence 458888888888888887777744211 0000 00 0 0000 00111 222333 4444 467
Q ss_pred HHHHHHHHHh-hhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhhhee
Q 025539 68 GNCLNFISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLVS 127 (251)
Q Consensus 68 g~~~~~~Al~-~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l~v~ 127 (251)
++.+.+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++++ +|.++++.|+.++..
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 7777778888 99999999999999999999999999999999999 999999999987753
No 40
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.12 E-value=0.23 Score=44.69 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 60 VGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al-~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
.|......+..+.+.+. ...|.+..+-+..+.=++..+++.+ +|||++++++.|..+..+|+.++.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 44444445556666677 8888888888889999999999975 799999999999999999988764
No 41
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.01 E-value=0.052 Score=50.97 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=69.8
Q ss_pred HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCC-----CCCCCHHHHHHHhhch
Q 025539 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ-----SPVYTPEQLAEKYSNI 148 (251)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~-----~~~~~~~~l~~~~~~~ 148 (251)
.||++-.++-..=+.+.|=+|...+|..+.+||++..+.+++.+.+.|++++...+.+. +.+....++..+++.-
T Consensus 178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA~ 257 (416)
T KOG2765|consen 178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSAL 257 (416)
T ss_pred HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998887765432 2334567888888887
Q ss_pred hHHHHHHH
Q 025539 149 TFLVYCLI 156 (251)
Q Consensus 149 ~fi~y~~~ 156 (251)
.+-+|.+.
T Consensus 258 ~YavY~vl 265 (416)
T KOG2765|consen 258 LYAVYTVL 265 (416)
T ss_pred HHHHHHHH
Confidence 78888764
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.067 Score=49.72 Aligned_cols=68 Identities=13% Similarity=0.274 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
+=..+|.+-+-+.++++...|.+.-+....+-++.++++...+|+||+++++|...++..+|+.++=.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 33468999888999999999999999999999999999999999999999999999999999998763
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.87 E-value=0.097 Score=41.90 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh----hccccc---------------------CCCCCCCCCccccc----cc-h-
Q 025539 7 GAFINLVGSIAINFGTNLLKLGHIER----EKHSTL---------------------DSDGTNGKHSLKPI----VH-Y- 55 (251)
Q Consensus 7 Gi~lal~~s~~~a~G~~lqk~~~~~~----~~~~~~---------------------~~~~~~~~~~~~~~----~~-~- 55 (251)
|..+++.|+++.++=.+++|+-..++ ++.+.. |+.... ...... .+ .
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~--~~~~~~~~~~~~~~~ 78 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLS--SFFSEIFGEELSSDP 78 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHhhhhhhcchH
Confidence 67889999999999999999887764 111100 110000 000001 11 2
Q ss_pred -hhHHHHHH--HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539 56 -HSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (251)
Q Consensus 56 -p~w~~G~~--~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l 124 (251)
..++.... +..+-+...+..+...+....+=++.+--+...+++..+++|+++..++.|..+.+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 22222111 1224455556677788888888888899999999999999999999999999999999864
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.36 E-value=0.15 Score=46.45 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheec
Q 025539 60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~ 128 (251)
.=..+...|+.+.++.+-+-.++--|-+..--++|.-+++..+||++++.++|+|...+.+|.+.+...
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 345688899999999999999999999999999999999999999999999999999999999888765
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.95 E-value=0.1 Score=48.82 Aligned_cols=59 Identities=14% Similarity=0.330 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHH------hccccchhhhhHHHHHHhhhhhhee
Q 025539 69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~------l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
+.+.+.++.+.|.+..+=+..+.=++.++++.++ +|||+++++++|.++..+|+.++..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3355779999999999999999999999999999 6999999999999999999987764
No 46
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.62 E-value=0.27 Score=45.78 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC----------C---CCCCCCCccccccchhhHHHHHHHHHHHH
Q 025539 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD----------S---DGTNGKHSLKPIVHYHSWRVGILVFLLGN 69 (251)
Q Consensus 3 ~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~p~w~~G~~~~~~g~ 69 (251)
+..+|-++++.|+++.|+..++|++-..+....+..- . --.+ .++..+.- ..|-.+. +++...
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~--w~~~~~~-~~v~~~ 240 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIH--WTSQVIG-LLVGYA 240 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccC--CChhhHH-HHHHHH
Confidence 3468999999999999999999998765543221100 0 0000 00111111 1122222 333344
Q ss_pred HHHHHHHhhhhHHHH------Hhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539 70 CLNFISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS 133 (251)
Q Consensus 70 ~~~~~Al~~ap~slv------~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~ 133 (251)
++.+.-|...|..+- .-++- ++-++++++..++.|++++..-++|-+++++|.++.....++++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 455667777776542 22222 46888999999999999999999999999999987766555443
No 47
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.41 E-value=0.063 Score=48.35 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 70 ~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
..++.++...+.+..+-.+.+-=++.++++.+++||+++..+++|.++++.|+.+.-.
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4555678888888888888888899999999999999999999999999999987653
No 48
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.24 E-value=0.11 Score=46.84 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhh----hHHHHHHhhhhh
Q 025539 58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIF 124 (251)
Q Consensus 58 w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~----~g~~li~~G~~l 124 (251)
...|+ ++.+|++..+.+-...-+..-.|+..++++.+.+-+-+++||+=+++|+ .|.+++++|.++
T Consensus 199 il~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 199 ILTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 34555 7889999999999999999999999999999999999999999998874 577777777653
No 49
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=93.69 E-value=0.068 Score=41.61 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=64.6
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhe
Q 025539 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126 (251)
Q Consensus 49 ~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v 126 (251)
.+.++.+...|+-+.+---|+.+-+.-++-+|.++-.|... +++.|..+++..+-.|.-.++-++|+.++++|+.+++
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 55667777788888888889999999999999999999865 7899999999874444445667999999999998764
No 50
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=1.3 Score=34.14 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHH---HHHHh
Q 025539 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLN---FISFG 77 (251)
Q Consensus 1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~---~~Al~ 77 (251)
|+.+.--+++-+.|++++.+. -++|.+.... +.-..---.|=+.+.=|.+.--.| -..|+
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~-------------pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s 67 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNK-------------PLVIVILASWGIAFFEYLLQVPANRIGHQVYS 67 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHH----HHHHHhccCC-------------chhHHHHHHhhHHHHHHHHhCccchhhhhhcc
Confidence 667777888999999988665 5788774210 000111123333333232211111 12333
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 78 YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 78 ~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
-+-+-..|- .+++..=+++|.+++||+++...+.|..++..|+.++
T Consensus 68 ~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 68 AAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 333333332 3567777899999999999999888888887776554
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.56 E-value=1.2 Score=40.51 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=60.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhhHH---HHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS---LLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (251)
Q Consensus 49 ~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~s---lv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l 124 (251)
.++..++|+=+....+.++--..|..-+-.||-. +=+.+|= +.=++|++++..++|||+++.+++.+.+-.+|+..
T Consensus 62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~ 141 (293)
T COG2962 62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI 141 (293)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4456778877777766666666777767676654 3333433 23357899999999999999999999999999987
Q ss_pred heeccCC
Q 025539 125 LVSFGNH 131 (251)
Q Consensus 125 ~v~~~~~ 131 (251)
......+
T Consensus 142 ~~~~~g~ 148 (293)
T COG2962 142 QTWLLGS 148 (293)
T ss_pred HHHHcCC
Confidence 7654443
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.53 E-value=0.34 Score=41.69 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-----------------CCCCCCCCCcccc---ccchhhHHHHHH
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-----------------DSDGTNGKHSLKP---IVHYHSWRVGIL 63 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~p~w~~G~~ 63 (251)
...|+...+.+.++.++..+.|++...+++..... ..++.+. ....+ -+....|..+ .
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 160 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTL-ISNFGFFIGYPTAVWIVG-L 160 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccch-hhccCcccCCchHHHHHH-H
Confidence 34577777777778888999998875443211000 0000000 00111 1122233333 3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhh
Q 025539 64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNI 123 (251)
Q Consensus 64 ~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~ 123 (251)
+...+.++-...+.+++.....=...+..+++.+++.++++|+++...+.|+.++..|+.
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 455666666678888888899999999999999999999999999999999999998864
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.90 E-value=0.83 Score=42.74 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-CCC--------C----CCCCCccccccc---hhhHHHHH---H
Q 025539 3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTL-DSD--------G----TNGKHSLKPIVH---YHSWRVGI---L 63 (251)
Q Consensus 3 ~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~-~~~--------~----~~~~~~~~~~~~---~p~w~~G~---~ 63 (251)
+..+|++..+++.++.+.=.+-|||. ++-+-|.- |.. + .-......++++ ...|..++ .
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 45679999999999988888888862 22110000 000 0 000001222222 23455554 3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhcccc---c----hhhhhHHHHHHhhhhhheeccCCCC
Q 025539 64 VFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---T----VKVLVATAFIVLGNIFLVSFGNHQS 133 (251)
Q Consensus 64 ~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~---~----~~~~~g~~li~~G~~l~v~~~~~~~ 133 (251)
+-.+|++.++.++.+.-.|+-.|+.- ++++.+.++.+.+++|=- + .....|++++++|+++....+...|
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45689999999999999999999987 889999999999998632 2 3358899999999999988554433
No 54
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=91.90 E-value=5.7 Score=35.64 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCC---CC---CC-CCccccccchh----hHHHHHHHHHHHHHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---GT---NG-KHSLKPIVHYH----SWRVGILVFLLGNCLNF 73 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~---~~---~~-~~~~~~~~~~p----~w~~G~~~~~~g~~~~~ 73 (251)
..|+.+.+++.++.+.+..+.|.+...-+-....-.| +. -. .+..+.-.+++ .++.|. +++..+.+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV-SLGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4588999999999999999998765421110000000 00 00 00000011222 225555 3566677778
Q ss_pred HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
.++...|.+...-+..+.=++..+++ +|+. .+..+..+..+|+.++..
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~--~~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRP--VDFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCCh--HHHHHHHHHHHHHheeee
Confidence 89999999987766666666665555 2544 345677777888877653
No 55
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=90.33 E-value=1.2 Score=40.12 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCC-----------CCCCCCCccccccchhh-HHHHHHHHHH----
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-----------DGTNGKHSLKPIVHYHS-WRVGILVFLL---- 67 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~p~-w~~G~~~~~~---- 67 (251)
...|+.+++.+..+-+.=...-|+.-. ..+....- -|. +..+..+.+.+|. -..++...++
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pi-g~~~ag~~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPI-GAAQAGPALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhh-hhhhcchhhcChHHHHHHHHHHHHhccc
Confidence 467888888888886655555432211 00100000 000 0011233344443 3344444443
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
=+.+..+|+...|...-.-|-++.=.+..+.+..+|||+++..+|+|+.+++.++.-.....++
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 4566778999999999999999999999999999999999999999999999998866554443
No 56
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=1.9 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
+-+.-|.+=++.+++-....-|.+.++.|+.|...|.+|+.++ .++|.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence 5567788888889999999999999999999999999996544 55554
No 57
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=88.86 E-value=0.88 Score=41.41 Aligned_cols=78 Identities=14% Similarity=0.325 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCC
Q 025539 56 HSWRVGILVFLLGNCLNFISFGYAAQS-LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS 133 (251)
Q Consensus 56 p~w~~G~~~~~~g~~~~~~Al~~ap~s-lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~ 133 (251)
+.|..=..++-.-+++|=.|+.|.-.. +=-=+.+-+++.|++++..++|+|-+.+++..+..+.+|+++...++.++.
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 445555555556677787788875222 122256779999999999999999999999999999999998887776643
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=88.06 E-value=2.9 Score=37.75 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccC-----------------C-CCCCCCCccccccchhhHHHHHHHH
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-----------------S-DGTNGKHSLKPIVHYHSWRVGILVF 65 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~p~w~~G~~~~ 65 (251)
+..|+++.+++-++.++-.+.|++-..+.+.+..+. . ...+..+..+-..+.|..+.-+.+.
T Consensus 152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 445999999999999999999997765543322110 0 0000000111122334433333332
Q ss_pred -HHHHHHHHH---HHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 66 -LLGNCLNFI---SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 66 -~~g~~~~~~---Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
..+.+++.. -...-.....+=...+--+.+.+++..+.+++++...|.|..++..|..+-..
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 233444422 22222233334444455677888899999999999999999999999876544
No 59
>PRK02237 hypothetical protein; Provisional
Probab=88.00 E-value=3.5 Score=32.19 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
+-+.=|.+=++.+++-....-|++.++.|++|..++.+|+.++. ++|.
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence 45556777788888999999999999999999999999998764 4553
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=87.16 E-value=2.5 Score=39.30 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
..+...+....+=.+.+-=++..+++..+++|+++..+++|.++++.|+.+.
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 3555555555555566667888999999999999999999999999999764
No 61
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.77 E-value=2.4 Score=33.04 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539 83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (251)
Q Consensus 83 lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~ 130 (251)
+-+.=|.+=++.+.+-...+-|++.++.|++|..+|.+|+.++. ++|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~-~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL-FAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE-ecC
Confidence 44566777788899999999999999999999999999998664 444
No 62
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=85.73 E-value=6.2 Score=30.70 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHH---HHHHHHHHH--Hhhh--h
Q 025539 8 AFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFL---LGNCLNFIS--FGYA--A 80 (251)
Q Consensus 8 i~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~---~g~~~~~~A--l~~a--p 80 (251)
+.+-++|++++.+. =++|.|..+ .+|.|.+=+..-+ ..+.++.=| +++. .
T Consensus 4 i~LL~~SN~FMTfA----WYGHLK~~~-------------------~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s 60 (108)
T PF04342_consen 4 ILLLILSNIFMTFA----WYGHLKFKS-------------------SKPLWIAILISWGIAFFEYCLQVPANRIGYQTFS 60 (108)
T ss_pred hHHHHHHHHHHHHH----HHHHhhccc-------------------cCcHHHHHHHHHHHHHHHHHHhCcchhhhccccC
Confidence 56778888888765 478887521 1266654433322 233333221 1111 1
Q ss_pred HHHHHhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhh
Q 025539 81 QSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124 (251)
Q Consensus 81 ~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l 124 (251)
+.=+.-++. +++..=++++.+++||+++.....|-++++.++..
T Consensus 61 ~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 61 LAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 112222332 45666678889999999999999998888766543
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=85.34 E-value=15 Score=29.68 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhh-HHHHHHHHHHH----HhccccchhhhhHHHHHHhhhhh
Q 025539 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSV-QFVSNIAFSYF----VFNKMVTVKVLVATAFIVLGNIF 124 (251)
Q Consensus 59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~-~lv~~~~~a~~----~l~E~~~~~~~~g~~li~~G~~l 124 (251)
|.|-.+-++--.++.........+...-+... .++.++++-++ .-+++++.++.+|.+++++|+.+
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45544433333333344444334433333333 36677777775 45789999999999999999864
No 64
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=79.08 E-value=1.2 Score=41.25 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 51 PIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 51 ~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
+...++.-..|. .+.+|-++.-.++..-|.+-.|-..++.-++.++++.++.+|+.++..+.-...++.|+.+-..
T Consensus 80 ~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 80 KLPLRTLLPLGL-VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred ccchHHHHHHHH-HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 344445555666 5568888888999999999999999999999999999999999999999888888888876544
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=77.45 E-value=27 Score=32.71 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=30.3
Q ss_pred Hhhh-hhHHHHHHHHHHHHhccccc--hhh----hhHHHHHHhhhhhhee
Q 025539 85 AALG-SVQFVSNIAFSYFVFNKMVT--VKV----LVATAFIVLGNIFLVS 127 (251)
Q Consensus 85 ~Pl~-~~~lv~~~~~a~~~l~E~~~--~~~----~~g~~li~~G~~l~v~ 127 (251)
.++. +.+++++.+=+- ++||+=+ +++ +.|.+++++|.+++..
T Consensus 293 w~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 293 WMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred HHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 3455 666666666665 4999877 443 8899999999987754
No 66
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=73.19 E-value=51 Score=29.10 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc--------------------cCCCCCCCCCccccccchhhHHH--H
Q 025539 4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHST--------------------LDSDGTNGKHSLKPIVHYHSWRV--G 61 (251)
Q Consensus 4 ~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~p~w~~--G 61 (251)
..+|+.+.++++++.+++-+...+-.++++...- .|.++. .....+.--.||. =
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~----~~~g~f~G~~~~~~~~ 187 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAI----SESGFFHGYSWWVWIV 187 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccc----ccCCchhhcchHHHHH
Confidence 4689999999999999999888766655431100 011000 0111222222222 1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHH
Q 025539 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117 (251)
Q Consensus 62 ~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~l 117 (251)
..+..+|-++-...+.++.-.+=.=-.+++++.+.+++..+++.+++..-.+|+.+
T Consensus 188 i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 188 IFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 22233444444445666665555555668899999999999999999888877764
No 67
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=69.49 E-value=43 Score=31.00 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539 59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (251)
Q Consensus 59 ~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~ 132 (251)
.+++ .-.++.-+++.||.+..--...=--+.-++--++.+.++-++|.+.+|.+-+.+|..|+.++..+.+.+
T Consensus 88 ~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 88 LISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 3444 345778888888888765444333444577888899999999999999999999999999998886654
No 68
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=64.99 E-value=24 Score=32.35 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 93 VSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 93 v~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
..++++|-.+++.+++...|+|+.++..|..+.....++
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777888899999999999999999999988654444
No 69
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=63.71 E-value=2.3 Score=38.51 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=50.6
Q ss_pred HHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 74 ~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
-|+..-...-++-|..-+++.-++++.++||.|-+..++.|+..|+.|+++++...
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 48888888899999999999999999999999999999999999999998887543
No 70
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=61.33 E-value=3.6 Score=37.46 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=56.4
Q ss_pred cccccchhhHHHHHHHHH---HHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhh
Q 025539 49 LKPIVHYHSWRVGILVFL---LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 49 ~~~~~~~p~w~~G~~~~~---~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~ 125 (251)
..|...+-+|..+. +-+ +|+++-..++..-.+--++=+.-..++++.+.-..+.||-.+.+.|.|.++++...+..
T Consensus 245 ~lP~cgkdr~l~~~-lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 245 QLPHCGKDRWLFVN-LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred ecCccccceEEEEE-ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 34455555565433 222 45555556787777777777788899999999999999999999999999887666555
Q ss_pred ee
Q 025539 126 VS 127 (251)
Q Consensus 126 v~ 127 (251)
..
T Consensus 324 a~ 325 (346)
T KOG4510|consen 324 AL 325 (346)
T ss_pred HH
Confidence 43
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=59.70 E-value=5 Score=36.08 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhh----hhHHHHHHhhhhhhee
Q 025539 60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVS 127 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~----~~g~~li~~G~~l~v~ 127 (251)
.|+ ..+.|++..+.|=..+-...--.+..++++.+.+=+-++||||=|++| +.|..++++|.+++..
T Consensus 215 ~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 215 PGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 444 456777777766555555555567778888888999999999999999 5677888888877643
No 72
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=59.63 E-value=12 Score=33.57 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 92 FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 92 lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
=.|+++++..+.+.+++.++|+|+.++..|...-+.+|.+
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 4688899999999999999999999999999988888864
No 73
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=56.68 E-value=22 Score=32.51 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=50.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH----HHhhhhHHHHHhhhhhHHHHHHHH-HHHHhccc--cchhh----hhHHHHHHh
Q 025539 52 IVHYHSWRVGILVFLLGNCLNFI----SFGYAAQSLLAALGSVQFVSNIAF-SYFVFNKM--VTVKV----LVATAFIVL 120 (251)
Q Consensus 52 ~~~~p~w~~G~~~~~~g~~~~~~----Al~~ap~slv~Pl~~~~lv~~~~~-a~~~l~E~--~~~~~----~~g~~li~~ 120 (251)
.+++|.-|.=+..++...+.|.. |+..-+.++|.|+--..+....++ +..+.+|- .+..+ ..|+..++.
T Consensus 206 ~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~ 285 (300)
T PF05653_consen 206 QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIII 285 (300)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 35566655555555556666643 889999999999998876655444 55556663 22322 567888888
Q ss_pred hhhhheec
Q 025539 121 GNIFLVSF 128 (251)
Q Consensus 121 G~~l~v~~ 128 (251)
|+.++...
T Consensus 286 GV~lL~~~ 293 (300)
T PF05653_consen 286 GVFLLSSS 293 (300)
T ss_pred hhheeecc
Confidence 88777543
No 74
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=55.04 E-value=1.6e+02 Score=26.51 Aligned_cols=135 Identities=11% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH---HHHHhhhhh--HHHHHHHHHH---HHhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 60 VGILVFLLGNCLNFISFGYAAQ---SLLAALGSV--QFVSNIAFSY---FVFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~---slv~Pl~~~--~lv~~~~~a~---~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
+|+...+.|.+.....+..... .++.|+-++ +.+...+.+. ...|-++...+.-=+-+...|+..+.-++..
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777777665555432 567777653 3444444432 3344455555554555566666655555555
Q ss_pred CCCCCCHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhH
Q 025539 132 QSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSV 205 (251)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~fi~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tv 205 (251)
-...++.+++.+..-+..++.-+++...+. +.|=++ .++ |.++++. |-+..+..||.+.-..+
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mA-IlHPFN----ACL---GPnE~q~---RTL~la~~~G~ls~ii~ 217 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMA-ILHPFN----ACL---GPNESQD---RTLTLAVECGFLSMIIF 217 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHH-hcCccc----ccc---CCCcchh---HHHHHHHHHHHHHHHHH
Confidence 556788898888888888775555443322 222111 111 2222233 26788888887765554
No 75
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=49.37 E-value=95 Score=29.68 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccc---------------------CCCCCCCCCccc-cccchhhHHHH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIERE-KHSTL---------------------DSDGTNGKHSLK-PIVHYHSWRVG 61 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~-~~~~~---------------------~~~~~~~~~~~~-~~~~~p~w~~G 61 (251)
.+|-++++.||++.++=.++-|+-.-+++ +-+.+ |-.+ ..+++.. ..--.-.-..|
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCCceeEeeeHhh
Confidence 68999999999999999999985544431 21110 0000 0000000 00001112345
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 62 ~~~~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
.+..++...+|..|...-.-.+++-=.++++..+++.=..+-+.+.+...++|.+.|.+|-+++-+..
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 55556777888777666655555555567788888887777799999999999999999987765544
No 76
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=49.20 E-value=1e+02 Score=27.56 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=38.2
Q ss_pred hhcchhhhhhhhhccchhhHHHHHHHHHHHHHHhhc--CccchhHHHHHHHHHHHHHHHHHHHhh
Q 025539 186 RMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSN--GYQLHSWFTYSMLLLFFSTAGFWVKII 248 (251)
Q Consensus 186 ~~~~~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~g--~~~~~~~~~y~ll~~~~~~~~~Ql~~L 248 (251)
|++.++..+.++|++.|.+..=.+-+-+-=. ...| .+.+.+-..+..=+.+..+.++-+|++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~-~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~ 243 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPD-IYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCI 243 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCcc-ccCCCCCcchheeHHHHhhHHHHHHHHHHHHHH
Confidence 4567999999999999988765544433100 0011 234555556666666677777776664
No 77
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=47.55 E-value=1.2e+02 Score=25.77 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHhhhhHHH---HHhhhhhHHHHHHHHHHHHhccccchh
Q 025539 55 YHSWRVGILVFLLGNCLNFI---SFGYAAQSL---LAALGSVQFVSNIAFSYFVFNKMVTVK 110 (251)
Q Consensus 55 ~p~w~~G~~~~~~g~~~~~~---Al~~ap~sl---v~Pl~~~~lv~~~~~a~~~l~E~~~~~ 110 (251)
|+.||-.+...++..+.++. ..++.|..+ +.|...+-+-..++..+++++.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46677776666666666654 333344442 334333433345556777888776643
No 78
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=47.22 E-value=1.1e+02 Score=26.47 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH---HHhhhhH
Q 025539 5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFI---SFGYAAQ 81 (251)
Q Consensus 5 ~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~---Al~~ap~ 81 (251)
..|++..++.++...+..-+..+=.-|... | --+||.||-++....+.-.+|+. +=+|.|.
T Consensus 124 ~~GlItlll~a~vgGfamy~my~y~yr~~a----d------------~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPt 187 (226)
T COG4858 124 VYGLITLLLTAVVGGFAMYIMYYYAYRMRA----D------------NSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPT 187 (226)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHhhc----c------------cccCCchHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 456666666666666666655443322211 1 02468899999888777777743 6677787
Q ss_pred HHH--HhhhhhHHHHHHHHH-HHHhccccchhh
Q 025539 82 SLL--AALGSVQFVSNIAFS-YFVFNKMVTVKV 111 (251)
Q Consensus 82 slv--~Pl~~~~lv~~~~~a-~~~l~E~~~~~~ 111 (251)
|+= -|=-++.++-.++++ +|++|++.+.+.
T Consensus 188 slN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 188 SLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 752 333344555555555 567788877654
No 79
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=47.07 E-value=1.7e+02 Score=25.74 Aligned_cols=96 Identities=10% Similarity=0.143 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhH---------HHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHh--hhh
Q 025539 55 YHSWRVGILVFLLGNCLNFISFGYAAQ---------SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL--GNI 123 (251)
Q Consensus 55 ~p~w~~G~~~~~~g~~~~~~Al~~ap~---------slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~--G~~ 123 (251)
|.+|..-. ++--|...++.|+..-.+ +...=+.=.++..+++++...++||.+.+..+-+.+... |+.
T Consensus 91 rsrilf~~-lyfwgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~~~~lg~~ 169 (236)
T COG5522 91 RSRILFSV-LYFWGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLVAISLGIM 169 (236)
T ss_pred cchHhhhh-HHHhhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHH
Confidence 44444443 333344445555544444 122233445677889999999999999999776665443 443
Q ss_pred hheeccCC-------CCCCCCHHHHHHHhhchhHHH
Q 025539 124 FLVSFGNH-------QSPVYTPEQLAEKYSNITFLV 152 (251)
Q Consensus 124 l~v~~~~~-------~~~~~~~~~l~~~~~~~~fi~ 152 (251)
...+...- +.++.+ .++.+.+..|+|-.
T Consensus 170 ~lfinrrLGtNYlylsk~P~~-~sildvlgpwp~Yi 204 (236)
T COG5522 170 CLFINRRLGTNYLYLSKEPES-ASILDVLGPWPFYI 204 (236)
T ss_pred HHHHHHHhcCceeEeecCCCc-hhHHHHhcCccHHH
Confidence 33322211 111121 35677777776533
No 80
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=44.67 E-value=1.4e+02 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=15.4
Q ss_pred hHHHHHhhhhhHHHH--HHHHHHH
Q 025539 80 AQSLLAALGSVQFVS--NIAFSYF 101 (251)
Q Consensus 80 p~slv~Pl~~~~lv~--~~~~a~~ 101 (251)
|-..++|+..+.+.. |.++||+
T Consensus 145 ~~~~i~~lDvf~vqAn~n~i~AHf 168 (183)
T PF12263_consen 145 PSQPIRALDVFVVQANTNTILAHF 168 (183)
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 556788888877655 5677765
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=43.91 E-value=12 Score=33.78 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=59.5
Q ss_pred cchhhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhh----hhHHHHHHhhhhh
Q 025539 53 VHYHSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIF 124 (251)
Q Consensus 53 ~~~p~w~~G~~~---~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~----~~g~~li~~G~~l 124 (251)
+.-..|..|++. -.+|+..+|-|+..--.|.-.|+.. ..++-+.+++.+.++|=-+..+ ....++++.|+.+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 334567777754 3589999999999999999999987 7899999999999999766555 3455667777766
Q ss_pred heeccC
Q 025539 125 LVSFGN 130 (251)
Q Consensus 125 ~v~~~~ 130 (251)
-..-.+
T Consensus 134 Ts~~~~ 139 (288)
T COG4975 134 TSKQDR 139 (288)
T ss_pred eeeecc
Confidence 555443
No 82
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=40.26 E-value=41 Score=29.52 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 69 ~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
+-.-..|+...+.+.+..+-+-.--|--+++...+|+|+...+++.+++-+.|++++....
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 4455668888899999999998888888999999999999999999999999998776543
No 83
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=38.18 E-value=3e+02 Score=24.82 Aligned_cols=139 Identities=13% Similarity=0.179 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh---hHHHHHhhhhh--HHHHHHHHHHH---HhccccchhhhhHHHHHHhhhhhheeccCC
Q 025539 60 VGILVFLLGNCLNFISFGYA---AQSLLAALGSV--QFVSNIAFSYF---VFNKMVTVKVLVATAFIVLGNIFLVSFGNH 131 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~a---p~slv~Pl~~~--~lv~~~~~a~~---~l~E~~~~~~~~g~~li~~G~~l~v~~~~~ 131 (251)
+|+..++.|.+......... ++.++.|.-++ +.+...+.+.. ..|-|+...+.-=+-+...|...+.-++.-
T Consensus 68 IGmlalGmG~iaal~G~~i~~~~~~~~~~PI~~liia~iiG~vvG~lan~vigMkIPiM~~smtels~agaLailG~s~a 147 (264)
T PRK01030 68 IGMLALGMGTIAALAGVAIGDALGIVLAGPIVALIIAAIIGAVVGKLANNVVGMKIPIMERSMTELSGAGALAILGFSTA 147 (264)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777776655554 33588887652 34444444332 334444444444444555565555545544
Q ss_pred CCCCCCHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHH
Q 025539 132 QSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAK 209 (251)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~fi~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK 209 (251)
-.+.++.+.+.+..-++.++.-+++...+. +.|=+ +.++ |.++++. |-+..+..||.+.-.-.-..|
T Consensus 148 ~~Gsf~~~~~~~~vi~~G~IAl~FI~~~mA-IlHPF----NACL---GP~E~q~---RTL~la~e~G~ls~ii~gi~s 214 (264)
T PRK01030 148 IAGSFDFDAIITSVIATGFIALLFILGGMA-ILHPF----NACL---GPNESQD---RTLTLAVECGFLSMIIFGIAS 214 (264)
T ss_pred HhCcccHHHHHHHHhcccHHHHHHHHHHHH-hcCcc----cccc---CCCcchh---HHHHHHHHHHHHHHHHHHHHH
Confidence 455688888888888888776555444322 22211 1111 2222233 268888888877655443333
No 84
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=36.35 E-value=3.3e+02 Score=24.62 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHhhhh--hHHHHHHHHHH---HHhccccchhhhhHHHHHHhhhhhheeccCCC
Q 025539 60 VGILVFLLGNCLNFISFGYAA--QSLLAALGS--VQFVSNIAFSY---FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ 132 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap--~slv~Pl~~--~~lv~~~~~a~---~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~ 132 (251)
+|+..++.|.+.......+.- ..++.|.-+ ++.+...+.+. -..|-|+...+.-=+-+...|...+.-++.--
T Consensus 75 IGm~alG~G~vaal~G~~i~g~i~~~a~PI~alIia~IiG~vvG~la~~vi~MkIPiM~~~mtels~agaLailG~s~ai 154 (265)
T TIGR01148 75 IGMMSLGMGILAAVAGLALGGNTPAIAAPIIALVVAAIIGGVVGVLANKVIGMKIPIMERCMTEISCAGTLALLGLSVAI 154 (265)
T ss_pred HHHHHHhHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877666621 127777654 23444444332 23445555555555555566665555555444
Q ss_pred CCCCCHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhhHHHHHH
Q 025539 133 SPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKS 210 (251)
Q Consensus 133 ~~~~~~~~l~~~~~~~~fi~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~tvl~aK~ 210 (251)
...++++.+.+..-+..++.-+++...+. +.|=++ .++ |.++++. |-+..+..||.+..+-.-..|.
T Consensus 155 aGsf~~~~~~~~vi~~G~IAl~Fi~~~mA-ilHPFN----ACL---GPnE~q~---RTL~La~e~G~ls~ii~~i~s~ 221 (265)
T TIGR01148 155 AGSFTWQAVISYVIANGYIALLFIIGGMA-ILHPFN----ACL---GPNESQD---RTLWLAVECGFITGFVSSLHEG 221 (265)
T ss_pred hCcccHHHHHHHHhcccHHHHHHHHHHHH-hcCcch----hcc---CCCcchh---HHHHHHHHHhHHHHHHHHHHHH
Confidence 56788888888888888776555443322 222111 111 1122232 2688888888776665544443
No 85
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=35.75 E-value=4e+02 Score=25.47 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh-----------------------------------hhHHHHHH
Q 025539 52 IVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-----------------------------------SVQFVSNI 96 (251)
Q Consensus 52 ~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl~-----------------------------------~~~lv~~~ 96 (251)
+=||+.-+..+.++++|++....|-.|.-+.+-.-+. +++.+..+
T Consensus 75 ~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~Gv 154 (394)
T COG2814 75 LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV 154 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhc
Confidence 3356666777778888888887765555443221111 23456666
Q ss_pred HHHHHHhccccchhhhhHHHHHHhhhhhhe-----eccC-C---CCCCCCHHHHHHHhhchhHHHHHHHHHH
Q 025539 97 AFSYFVFNKMVTVKVLVATAFIVLGNIFLV-----SFGN-H---QSPVYTPEQLAEKYSNITFLVYCLILIF 159 (251)
Q Consensus 97 ~~a~~~l~E~~~~~~~~g~~li~~G~~l~v-----~~~~-~---~~~~~~~~~l~~~~~~~~fi~y~~~~~~ 159 (251)
+++.+ ++|-+++|....+ +.+..++. ..-| + +++..+..|..+.+++|.-...+....+
T Consensus 155 PLGt~-ig~~~GWR~~F~~---ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l 222 (394)
T COG2814 155 PLGTF-LGQLFGWRATFLA---IAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFL 222 (394)
T ss_pred cHHHH-HHHHhhHHHHHHH---HHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHH
Confidence 66655 5565665554333 33322221 2224 2 2223456678889999986655554433
No 86
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.74 E-value=18 Score=33.23 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhh
Q 025539 66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNI 123 (251)
Q Consensus 66 ~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~ 123 (251)
+++-..|-..+.+.|.+--+-=.++..+||+++++.++|++-+..-..+|.+|+.|-.
T Consensus 113 i~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 113 ILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 3444445556677777766667788999999999999999998888888888877753
No 87
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=35.59 E-value=92 Score=23.74 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCchhhhhcchhhhhhhhhccchhh
Q 025539 133 SPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFS 204 (251)
Q Consensus 133 ~~~~~~~~l~~~~~~~~fi~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~y~~~sg~lg~~t 204 (251)
+++...+++++.+.++.-.+|-.++.++.+.+-..+..+ -++ +.+.-+..||+++-..
T Consensus 3 k~P~~W~~ll~wl~~~~~~~~~a~lA~~mA~LR~~Y~g~------------~~~--r~llea~lCg~lal~~ 60 (100)
T PF05106_consen 3 KNPDFWAQLLAWLQSHWPQIYGALLAFVMALLRGAYGGG------------SWR--RRLLEALLCGLLALFA 60 (100)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------cHH--HHHHHHHHHHHHHHHH
Confidence 455677788887777665555555554444432233111 122 2688889998776443
No 88
>COG2855 Predicted membrane protein [Function unknown]
Probab=33.11 E-value=1.9e+02 Score=27.12 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=58.8
Q ss_pred cccchhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 51 PIVHYHSWRVGILVFLLG-NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 51 ~~~~~p~w~~G~~~~~~g-~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
...+++.-..|..+|++. ++-++...+.--.....-.-+.++++...+++ ++|-+-+..-.+|+..-++|..-+....
T Consensus 65 ~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~ 143 (334)
T COG2855 65 TFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGK-LLGLDKKLALLIAAGSSICGASAIAATA 143 (334)
T ss_pred hhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhC
Confidence 345567778999999876 55556777776666666666778888888888 6777666667888888888887776555
Q ss_pred CC
Q 025539 130 NH 131 (251)
Q Consensus 130 ~~ 131 (251)
|.
T Consensus 144 pv 145 (334)
T COG2855 144 PV 145 (334)
T ss_pred Cc
Confidence 53
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=29.93 E-value=3.4e+02 Score=24.73 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhH-HHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhh
Q 025539 68 GNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYS 146 (251)
Q Consensus 68 g~~~~~~Al~~ap~slv~Pl~~~~-lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~ 146 (251)
-|.+-+.++..-|+.+...+--++ +..+++.++ +.+|.+++.+.+.|..++...++..++.+...-...+..
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sR-------r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~A 156 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSR-------RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGA 156 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHhcc-------chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHH
Confidence 355556799999998887776665 333333331 467889999999999988877766554344443333333
Q ss_pred chhHHHHHH
Q 025539 147 NITFLVYCL 155 (251)
Q Consensus 147 ~~~fi~y~~ 155 (251)
---|..|+.
T Consensus 157 G~~Wa~YIv 165 (292)
T COG5006 157 GACWALYIV 165 (292)
T ss_pred hHHHHHHHH
Confidence 333444443
No 90
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=29.91 E-value=77 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 025539 3 EWVIGAFINLVGSIAINFGT 22 (251)
Q Consensus 3 ~~~iGi~lal~~s~~~a~G~ 22 (251)
.|++|+.+|..-+++.++..
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47899999998888877653
No 91
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=28.86 E-value=3.5e+02 Score=25.06 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=21.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 025539 50 KPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLL 84 (251)
Q Consensus 50 ~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv 84 (251)
+..+++|..|.+...+.+.....+.-..+.|..+.
T Consensus 212 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~ 246 (413)
T PRK15403 212 RNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILI 246 (413)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 45677888887776665555544444455665544
No 92
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=28.77 E-value=3.6e+02 Score=22.77 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=14.9
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHH-hcc-ccchhh
Q 025539 80 AQSLLAALGSVQFVSNIAFSYFV-FNK-MVTVKV 111 (251)
Q Consensus 80 p~slv~Pl~~~~lv~~~~~a~~~-l~E-~~~~~~ 111 (251)
|...+.|......+.+...+.+- .|| +++++.
T Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 65 (240)
T PF01925_consen 32 PPKQAVATSLFINLFTSLIAALRHRKHGNIDWKI 65 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccccchhh
Confidence 44445555555444444444443 344 255543
No 93
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=28.74 E-value=79 Score=18.97 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 025539 3 EWVIGAFINLVGSIAINFGTN 23 (251)
Q Consensus 3 ~~~iGi~lal~~s~~~a~G~~ 23 (251)
.|++|+.+|+.-+++.++-.-
T Consensus 5 aWilG~~lA~~~~v~~a~w~E 25 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWLE 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999888887776543
No 94
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=26.85 E-value=2.3e+02 Score=19.89 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHH
Q 025539 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLN 72 (251)
Q Consensus 1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~ 72 (251)
|+...+...++++.|...++-.-++.++ +.+++.+.=.|.+|+....+.-++-
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~kd~~-------------------~~~rm~~~L~~RV~lS~~l~~lil~ 53 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLVKDKG-------------------SSKRMVKALGRRVGLSALLFLLILI 53 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhCCC-------------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677888887777665554111 2345566667778886665554443
No 95
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.67 E-value=2.5e+02 Score=20.61 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=11.8
Q ss_pred cchhhHHHHHHHHHHH
Q 025539 53 VHYHSWRVGILVFLLG 68 (251)
Q Consensus 53 ~~~p~w~~G~~~~~~g 68 (251)
+|+|.||++++..++-
T Consensus 8 ~kN~~~w~ali~~i~l 23 (84)
T PF04531_consen 8 FKNKAFWVALISAILL 23 (84)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5889999998655433
No 96
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=26.06 E-value=1.1e+02 Score=24.28 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=7.4
Q ss_pred HHHHHHHhhcch
Q 025539 162 AIYHYIYRKGEN 173 (251)
Q Consensus 162 ~~~~~~~r~~~~ 173 (251)
+++.+++|+++.
T Consensus 76 ~lLI~WYR~gdl 87 (118)
T PF10856_consen 76 ILLIFWYRQGDL 87 (118)
T ss_pred HhheeehhcCCC
Confidence 345567888753
No 97
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=24.36 E-value=3e+02 Score=25.30 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhhee
Q 025539 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (251)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~ 127 (251)
..+-...|.+++-=++=++=..-.++|.++.||+++..+...-+++-+|.++...
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466666777666555555555667788888999999999888888888876643
No 98
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=24.11 E-value=50 Score=30.72 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheec
Q 025539 73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF 128 (251)
Q Consensus 73 ~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~ 128 (251)
=.++.+.|+++-+---+.+++|-.+++..+-=|+++..-..=+.++.+|+.+++.-
T Consensus 102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 46899999999999999999999999999989999988888888888888877653
No 99
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=24.09 E-value=3.7e+02 Score=22.99 Aligned_cols=69 Identities=10% Similarity=0.272 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccCCCCCCCCH--HHHHHHhhchhHHHHHHHHHHHH
Q 025539 91 QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP--EQLAEKYSNITFLVYCLILIFIV 161 (251)
Q Consensus 91 ~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~~~~~~~~~--~~l~~~~~~~~fi~y~~~~~~~~ 161 (251)
|+.+=++.+++..+-..+.+-+++. -+.|...+..++|-+.+.+.+ .|..+..++.+.+.++.++++..
T Consensus 88 Sll~fv~~py~~~ni~~Nn~~vLa~--~iiglL~i~~yAPa~teahplvg~e~~kr~Kk~a~im~lll~iI~l 158 (198)
T COG4512 88 SLLMFVLIPYVPFNIDANNYAVLAY--FIIGLLLIFKYAPADTEAHPLVGTEHRKRLKKRAAIMLLLLFIILL 158 (198)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHH--HHHHHHHHHhcCccccccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666666555 456777788889866555544 58888888888777776665433
No 100
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.98 E-value=79 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025539 1 MGEWVIGAFINLVGSIAINFGTNLLKLGHI 30 (251)
Q Consensus 1 m~~~~iGi~lal~~s~~~a~G~~lqk~~~~ 30 (251)
|+.|++....-+.-.+.+++|..++|+...
T Consensus 1 M~t~lltFg~Fllvi~gMsiG~I~krk~I~ 30 (77)
T COG2991 1 MTTFLLTFGIFLLVIAGMSIGYIFKRKSIK 30 (77)
T ss_pred CccHHHHHHHHHHHHHHHhHhhheeccccc
Confidence 777877666666777889999999997654
No 101
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=23.30 E-value=12 Score=34.62 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhh-hHHHHHHHHHHHHhccccchhhh--hHHHHHHhhhhh
Q 025539 60 VGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVL--VATAFIVLGNIF 124 (251)
Q Consensus 60 ~G~~~~~~g~~~~~~Al~~ap~slv~Pl~~-~~lv~~~~~a~~~l~E~~~~~~~--~g~~li~~G~~l 124 (251)
+|-+.+-+|+++--.|.+++-+++--|+++ +++|....+.++ +..|.++.++ -|+.++.+.+++
T Consensus 77 aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 77 AGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred HhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHH
Confidence 344455578888888999999999999997 778888888766 4566776553 477777766654
No 102
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=22.93 E-value=2.2e+02 Score=21.22 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 025539 220 SNGYQLHSWFTYSMLLLFFSTAGFWVKIIKE 250 (251)
Q Consensus 220 ~g~~~~~~~~~y~ll~~~~~~~~~Ql~~LNk 250 (251)
+....+.+-..++++.+++...++|++|-|.
T Consensus 18 ~k~~~~s~li~~~LilfviF~~~L~~yy~kt 48 (83)
T PF05814_consen 18 DKNEGFSELIITLLILFVIFFCVLQVYYIKT 48 (83)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333677778888899999999999999874
No 103
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=22.49 E-value=3.8e+02 Score=25.49 Aligned_cols=74 Identities=11% Similarity=-0.054 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhhHH--------------HHHhhhhhHHHHHHHHHHHHhccccchhh--hh
Q 025539 50 KPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS--------------LLAALGSVQFVSNIAFSYFVFNKMVTVKV--LV 113 (251)
Q Consensus 50 ~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~s--------------lv~Pl~~~~lv~~~~~a~~~l~E~~~~~~--~~ 113 (251)
.+.+|+|..+.+...........+....+.|.. ...|......+.+.+.+... +|.+++. ..
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~--~r~g~~~~~~~ 330 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV--SRLGLRLVATG 330 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCchHHHHH
Confidence 356777777766654433333222222233322 33444444444444444432 4455444 33
Q ss_pred HHHHHHhhhhhh
Q 025539 114 ATAFIVLGNIFL 125 (251)
Q Consensus 114 g~~li~~G~~l~ 125 (251)
|..+..+|..++
T Consensus 331 g~~~~~~~~~~l 342 (495)
T PRK14995 331 GMALSALSFYGL 342 (495)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 104
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.76 E-value=1.3e+02 Score=24.72 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=23.6
Q ss_pred hhhhHHHHHHhhhhhheeccCCC--CCCCCHHHHHH
Q 025539 110 KVLVATAFIVLGNIFLVSFGNHQ--SPVYTPEQLAE 143 (251)
Q Consensus 110 ~~~~g~~li~~G~~l~v~~~~~~--~~~~~~~~l~~ 143 (251)
++++..+++.+-+.++...||.. ++++|++|+.+
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~ 37 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQ 37 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHH
Confidence 45778888876666555666654 45789998854
No 105
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=21.54 E-value=2.4e+02 Score=24.29 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhhHHHHHHHHHHHH
Q 025539 65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV 102 (251)
Q Consensus 65 ~~~g~~~~~~Al~~ap~slv~Pl~~~~lv~~~~~a~~~ 102 (251)
.++++.++..++...|.+.++|+.-+.=+++++++.+.
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888899999999999999999988888888664
No 106
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=3.5e+02 Score=22.30 Aligned_cols=35 Identities=9% Similarity=0.325 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHh----ccccchhhhhHHHHHHhhhhhh
Q 025539 91 QFVSNIAFSYFVF----NKMVTVKVLVATAFIVLGNIFL 125 (251)
Q Consensus 91 ~lv~~~~~a~~~l----~E~~~~~~~~g~~li~~G~~l~ 125 (251)
.++.++++=++=. +++++..++.|++++.+|+.++
T Consensus 106 Qli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 106 QLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3445555544433 3779999999999999995444
No 107
>PRK14749 hypothetical protein; Provisional
Probab=20.32 E-value=2.1e+02 Score=17.12 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 025539 3 EWVIGAFINLVGSIAINFGTN 23 (251)
Q Consensus 3 ~~~iGi~lal~~s~~~a~G~~ 23 (251)
.|++|+.+|..-+++.++=.-
T Consensus 5 aWiLG~~lAc~f~ilna~w~E 25 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899998888887776443
No 108
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=20.30 E-value=1e+02 Score=27.79 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHhhhhhheeccC
Q 025539 94 SNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN 130 (251)
Q Consensus 94 ~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~~ 130 (251)
=-++++..+.+.+-.+++...+..|++|++++..--+
T Consensus 124 PVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 124 PVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred ceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 3467788889999999999999999999999987533
Done!