Query 025539
Match_columns 251
No_of_seqs 165 out of 757
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:23:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 2.1E-09 7.2E-14 82.9 11.5 100 9-129 5-105 (110)
2 2i68_A Protein EMRE; transmemb 98.9 2.5E-09 8.5E-14 85.8 8.3 100 9-129 5-105 (137)
3 3o7q_A L-fucose-proton symport 52.1 70 0.0024 27.6 9.1 34 49-82 251-284 (438)
4 2hac_A T-cell surface glycopro 13.0 1.2E+02 0.004 17.8 1.9 24 87-110 8-31 (33)
5 3arc_J Photosystem II reaction 9.8 3.4E+02 0.011 16.5 3.3 11 54-64 7-17 (40)
6 1v54_C Cytochrome C oxidase po 7.3 9.8E+02 0.034 19.9 7.3 26 53-79 75-100 (261)
7 2l16_A SEC-independent protein 6.8 2.6E+02 0.0088 19.3 2.1 22 117-143 10-31 (78)
8 2vda_B Maltoporin; sugar trans 5.8 1.2E+02 0.0042 16.5 -0.0 15 190-204 12-26 (28)
9 2lcn_A WALP19-P10 peptide; pro 5.6 3.7E+02 0.013 14.3 1.8 8 74-81 5-12 (26)
10 4gc0_A D-xylose-proton symport 5.5 6.8E+02 0.023 21.5 4.8 55 54-108 84-156 (491)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.04 E-value=2.1e-09 Score=82.94 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-
Q 025539 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (251)
Q Consensus 9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl- 87 (251)
.+.+++.++-+.|+...|++.. . .+.+.+..+...++++..+...|+...|++.++|+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~---------------~------~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~ 63 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG---------------F------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---------------c------chHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4567788999999999997521 0 01244567788889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
.+++.++..+++.+++||+++..+++|..+++.|+.++...+
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999886543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.93 E-value=2.5e-09 Score=85.84 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-
Q 025539 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (251)
Q Consensus 9 ~lal~~s~~~a~G~~lqk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~slv~Pl- 87 (251)
++.+++.++-+.|+.+.|++... .+.+.++.|.++++++..++..++...|++.++|+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g~---------------------~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw 63 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEGF---------------------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 34567888999999999976210 01244578888999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhHHHHHHhhhhhheecc
Q 025539 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG 129 (251)
Q Consensus 88 ~~~~lv~~~~~a~~~l~E~~~~~~~~g~~li~~G~~l~v~~~ 129 (251)
.+++.++.++++.+++||+++..+++|++++++|+.++...+
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999886544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=52.13 E-value=70 Score=27.57 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=18.1
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 025539 49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS 82 (251)
Q Consensus 49 ~~~~~~~p~w~~G~~~~~~g~~~~~~Al~~ap~s 82 (251)
.+..+++|.+|.......+..........+.|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777877776655544433333333444444
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=13.04 E-value=1.2e+02 Score=17.77 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHhccccchh
Q 025539 87 LGSVQFVSNIAFSYFVFNKMVTVK 110 (251)
Q Consensus 87 l~~~~lv~~~~~a~~~l~E~~~~~ 110 (251)
|.++=++.++++..++.+||+.+.
T Consensus 8 LDgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 8 LDGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556778888888899988764
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=9.79 E-value=3.4e+02 Score=16.45 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.4
Q ss_pred chhhHHHHHHH
Q 025539 54 HYHSWRVGILV 64 (251)
Q Consensus 54 ~~p~w~~G~~~ 64 (251)
|-|+|.+|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 45999998854
No 6
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=7.29 E-value=9.8e+02 Score=19.89 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=16.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 025539 53 VHYHSWRVGILVFLLGNCLNFISFGYA 79 (251)
Q Consensus 53 ~~~p~w~~G~~~~~~g~~~~~~Al~~a 79 (251)
.+++.| .|+.++.++++.-|.++-.+
T Consensus 75 ~~~~~~-~Gm~lfi~SE~~~F~~~f~a 100 (261)
T 1v54_C 75 VQKGLR-YGMILFIISEVLFFTGFFWA 100 (261)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-HHHHHHHHHHHHHHHHHHHH
Confidence 344544 58888888888777654433
No 7
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=6.78 E-value=2.6e+02 Score=19.35 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=13.2
Q ss_pred HHHhhhhhheeccCCCCCCCCHHHHHH
Q 025539 117 FIVLGNIFLVSFGNHQSPVYTPEQLAE 143 (251)
Q Consensus 117 li~~G~~l~v~~~~~~~~~~~~~~l~~ 143 (251)
+++++++.+++|||+. ++|+.+
T Consensus 10 lliIlvVaLlvfGpkk-----LP~l~r 31 (78)
T 2l16_A 10 LILIFVIALIIFGPSK-----LPEIGR 31 (78)
T ss_dssp HHHHHHHHHHHSCTTT-----HHHHHH
T ss_pred HHHHHHHHhheeCccH-----hHHHHH
Confidence 3455566677788765 555544
No 8
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=5.79 E-value=1.2e+02 Score=16.55 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.5
Q ss_pred hhhhhhhhhccchhh
Q 025539 190 PFSYAIVSGAVGSFS 204 (251)
Q Consensus 190 ~l~y~~~sg~lg~~t 204 (251)
++.-+.++|+++++.
T Consensus 12 plavav~agv~~aqa 26 (28)
T 2vda_B 12 PLAVAVAAGVMSAQA 26 (28)
T ss_dssp THHHHHHHHTTCCCC
T ss_pred chHHHHHHHHhHhhh
Confidence 788889999988764
No 9
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=5.56 E-value=3.7e+02 Score=14.30 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.7
Q ss_pred HHHhhhhH
Q 025539 74 ISFGYAAQ 81 (251)
Q Consensus 74 ~Al~~ap~ 81 (251)
.|++.+|+
T Consensus 5 lalalapa 12 (26)
T 2lcn_A 5 LALALAPA 12 (26)
T ss_pred HHHHHhHH
Confidence 34444444
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=5.50 E-value=6.8e+02 Score=21.52 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=30.4
Q ss_pred chhhHHHHHHHHHHHHHHHHH------------------HHhhhhHHHHHhhhhhHHHHHHHHHHHHhccccc
Q 025539 54 HYHSWRVGILVFLLGNCLNFI------------------SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVT 108 (251)
Q Consensus 54 ~~p~w~~G~~~~~~g~~~~~~------------------Al~~ap~slv~Pl~~~~lv~~~~~a~~~l~E~~~ 108 (251)
|||....+..++.++.++... |-.+.-..+.-=+.+++.=.....+..+..|-..
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455556666666666665531 1122223444445555555666677777777543
Done!