Query 025539
Match_columns 251
No_of_seqs 165 out of 757
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 12:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 14.4 84 0.0061 16.6 2.9 26 80-105 8-33 (34)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 10.4 1.3E+02 0.0095 16.1 3.0 11 54-64 1-11 (34)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 7.0 3.5E+02 0.025 22.1 6.1 30 190-219 19-48 (444)
4 d1m56d_ f.23.8.1 (D:) Bacteria 6.9 1.5E+02 0.011 16.7 2.4 13 225-237 19-31 (42)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 6.1 1.7E+02 0.012 18.3 2.5 30 190-220 34-63 (69)
6 d1h3ga1 b.1.18.2 (A:3-95) Cycl 5.8 24 0.0017 23.9 -2.1 7 56-62 10-16 (93)
7 d1nekd_ f.21.2.2 (D:) Succinat 5.8 3.8E+02 0.028 17.4 6.1 50 111-162 18-67 (113)
8 d1qled_ f.23.8.1 (D:) Bacteria 5.1 1.4E+02 0.011 16.9 1.5 14 225-238 20-33 (43)
9 d1rh5a_ f.41.1.1 (A:) Preprote 5.0 7.1E+02 0.052 20.1 6.9 32 90-122 144-177 (422)
10 d3cx5e2 f.23.12.1 (E:31-86) Ir 4.7 1.9E+02 0.014 17.3 1.9 29 190-219 24-52 (56)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=14.39 E-value=84 Score=16.60 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=17.2
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHhcc
Q 025539 80 AQSLLAALGSVQFVSNIAFSYFVFNK 105 (251)
Q Consensus 80 p~slv~Pl~~~~lv~~~~~a~~~l~E 105 (251)
-...|+.+.+.+++++++...+.-+|
T Consensus 8 vvvmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 8 VVVMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccchhhhHHHHHHHHhhccc
Confidence 34566777788888887766555444
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.43 E-value=1.3e+02 Score=16.11 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.9
Q ss_pred chhhHHHHHHH
Q 025539 54 HYHSWRVGILV 64 (251)
Q Consensus 54 ~~p~w~~G~~~ 64 (251)
|-|+|.+|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 34899988743
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.04 E-value=3.5e+02 Score=22.09 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=20.6
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHh
Q 025539 190 PFSYAIVSGAVGSFSVLFAKSLSNLLRLAM 219 (251)
Q Consensus 190 ~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~ 219 (251)
.+..+.+.|++.|..+.+-+...+.+.+..
T Consensus 19 ~~~la~liGi~~gl~~~~~~~~i~~~~~~~ 48 (444)
T d1otsa_ 19 ILFMAAVVGTLVGLAAVAFDKGVAWLQNQR 48 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778777777777676666665543
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.92 E-value=1.5e+02 Score=16.70 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=6.4
Q ss_pred chhHHHHHHHHHH
Q 025539 225 LHSWFTYSMLLLF 237 (251)
Q Consensus 225 ~~~~~~y~ll~~~ 237 (251)
|-.|.+|..+++.
T Consensus 19 Fik~~t~~~i~~i 31 (42)
T d1m56d_ 19 FVRMVTWAAVVIV 31 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444333
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.10 E-value=1.7e+02 Score=18.26 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.7
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHhh
Q 025539 190 PFSYAIVSGAVGSFSVLFAKSLSNLLRLAMS 220 (251)
Q Consensus 190 ~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~~ 220 (251)
++.| ...|..|..++-.+|.++.-+..+++
T Consensus 34 ~fsY-l~~g~~~v~~ay~AK~~V~~fvssmS 63 (69)
T d1ppje2 34 GFSY-LVTATTTVGVAYAAKNVVSQFVSSMS 63 (69)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred eehh-hhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 7888 66677888888899999998887664
No 6
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=5.83 E-value=24 Score=23.89 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 025539 56 HSWRVGI 62 (251)
Q Consensus 56 p~w~~G~ 62 (251)
|-||+||
T Consensus 10 p~WW~GM 16 (93)
T d1h3ga1 10 PFWWAGM 16 (93)
T ss_dssp SCEETTC
T ss_pred ChhHcCC
Confidence 3344443
No 7
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.77 E-value=3.8e+02 Score=17.43 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=31.8
Q ss_pred hhhHHHHHHhhhhhheeccCCCCCCCCHHHHHHHhhchhHHHHHHHHHHHHH
Q 025539 111 VLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVA 162 (251)
Q Consensus 111 ~~~g~~li~~G~~l~v~~~~~~~~~~~~~~l~~~~~~~~fi~y~~~~~~~~~ 162 (251)
|+-++.++.....++..+.. .+..+.++..+.+++|..-....+..+...
T Consensus 18 RvSAv~l~~l~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~il~~l~l~~~~ 67 (113)
T d1nekd_ 18 RATAIVLTLYIIYMVGFFAT--SGELTYEVWIGFFASAFTKVFTLLALFSIL 67 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TSSCCHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34455555555544443333 245788999999999987777666655443
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.13 E-value=1.4e+02 Score=16.92 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHH
Q 025539 225 LHSWFTYSMLLLFF 238 (251)
Q Consensus 225 ~~~~~~y~ll~~~~ 238 (251)
|-.|.+|..+++.+
T Consensus 20 Fi~~~t~~~i~~i~ 33 (43)
T d1qled_ 20 FIKGATWVSILSIA 33 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556665444333
No 9
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.99 E-value=7.1e+02 Score=20.10 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhccccchhhhh-HHHHHH-hhh
Q 025539 90 VQFVSNIAFSYFVFNKMVTVKVLV-ATAFIV-LGN 122 (251)
Q Consensus 90 ~~lv~~~~~a~~~l~E~~~~~~~~-g~~li~-~G~ 122 (251)
+.++....+-. +++|.++.+.+- |+-+++ +|+
T Consensus 144 ~~L~aGt~~lm-wL~E~It~~GiGnGiSLiI~~gI 177 (422)
T d1rh5a_ 144 IQIAFGSIILI-YLDEIVSKYGIGSGIGLFIAAGV 177 (422)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhhcCcccchHHHHHHHH
Confidence 44444555543 479999986654 544443 344
No 10
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.69 E-value=1.9e+02 Score=17.33 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=22.3
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHh
Q 025539 190 PFSYAIVSGAVGSFSVLFAKSLSNLLRLAM 219 (251)
Q Consensus 190 ~l~y~~~sg~lg~~tvl~aK~~~~ll~~~~ 219 (251)
.+.|-.. |-.|-.++-.+|+.++-+..++
T Consensus 24 ~fsY~mv-Gs~g~~~a~~AKstV~~FlssM 52 (56)
T d3cx5e2 24 SYAYFMV-GAMGLLSSAGAKSTVETFISSM 52 (56)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEee-ehhHHHHHHHHHHHHHHHHHhc
Confidence 6777554 6677888889999999887655
Done!