Query 025540
Match_columns 251
No_of_seqs 178 out of 1113
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1643 Triosephosphate isomer 100.0 1.6E-94 3.5E-99 616.0 23.7 246 1-248 1-246 (247)
2 PLN02561 triosephosphate isome 100.0 3.1E-93 6.8E-98 636.5 26.6 248 1-248 1-248 (253)
3 PRK14567 triosephosphate isome 100.0 7.9E-93 1.7E-97 633.3 26.5 245 4-250 2-249 (253)
4 PRK14566 triosephosphate isome 100.0 1.7E-92 3.6E-97 633.0 26.9 246 1-249 2-258 (260)
5 PRK15492 triosephosphate isome 100.0 5.1E-92 1.1E-96 631.4 27.1 249 2-251 1-260 (260)
6 PTZ00333 triosephosphate isome 100.0 6.3E-92 1.4E-96 629.5 26.1 249 1-250 2-253 (255)
7 PF00121 TIM: Triosephosphate 100.0 3E-92 6.5E-97 628.5 23.0 240 5-245 1-244 (244)
8 PRK00042 tpiA triosephosphate 100.0 9.9E-92 2.1E-96 626.8 26.3 245 3-249 1-249 (250)
9 COG0149 TpiA Triosephosphate i 100.0 1.4E-91 3E-96 621.6 26.9 247 2-250 1-249 (251)
10 PLN02429 triosephosphate isome 100.0 7.6E-91 1.6E-95 635.1 26.9 247 1-249 62-309 (315)
11 cd00311 TIM Triosephosphate is 100.0 1.1E-90 2.3E-95 617.7 25.0 240 5-246 1-242 (242)
12 PRK14905 triosephosphate isome 100.0 8.4E-88 1.8E-92 626.9 26.7 248 1-249 1-259 (355)
13 PRK14565 triosephosphate isome 100.0 1.4E-87 3.1E-92 594.7 26.3 233 4-249 2-235 (237)
14 PRK13962 bifunctional phosphog 100.0 9.3E-87 2E-91 656.5 26.1 245 2-248 396-644 (645)
15 TIGR00419 tim triosephosphate 100.0 5.6E-77 1.2E-81 517.7 20.9 203 6-239 1-204 (205)
16 PRK04302 triosephosphate isome 100.0 4.4E-53 9.6E-58 371.4 21.6 213 2-249 1-219 (223)
17 PRK13111 trpA tryptophan synth 98.5 9E-07 2E-11 80.0 9.7 122 79-238 108-233 (258)
18 PRK11840 bifunctional sulfur c 98.4 1.6E-06 3.5E-11 80.4 10.9 143 68-248 140-294 (326)
19 cd04729 NanE N-acetylmannosami 98.1 0.00021 4.6E-09 62.3 16.9 181 18-242 27-216 (219)
20 PRK13125 trpA tryptophan synth 98.1 6.7E-05 1.5E-09 66.9 13.4 183 14-238 14-219 (244)
21 cd04724 Tryptophan_synthase_al 98.0 0.00016 3.5E-09 64.5 13.3 118 81-238 97-220 (242)
22 cd04728 ThiG Thiazole synthase 98.0 4.6E-05 1E-09 68.3 9.7 138 69-247 67-219 (248)
23 PRK00208 thiG thiazole synthas 98.0 4.8E-05 1E-09 68.3 9.8 139 68-247 66-219 (250)
24 PLN02591 tryptophan synthase 97.9 9.5E-05 2.1E-09 66.6 11.0 118 81-238 99-223 (250)
25 TIGR01163 rpe ribulose-phospha 97.9 0.0013 2.9E-08 56.2 17.7 135 81-246 72-207 (210)
26 PRK05581 ribulose-phosphate 3- 97.7 0.0017 3.6E-08 56.2 14.5 134 82-248 78-214 (220)
27 cd00331 IGPS Indole-3-glycerol 97.6 0.0012 2.7E-08 57.3 12.8 128 80-246 86-215 (217)
28 cd04722 TIM_phosphate_binding 97.6 0.0085 1.8E-07 49.3 17.1 143 59-234 57-200 (200)
29 cd00429 RPE Ribulose-5-phospha 97.6 0.0029 6.2E-08 54.0 14.0 135 81-247 73-209 (211)
30 TIGR03128 RuMP_HxlA 3-hexulose 97.5 0.0043 9.4E-08 53.3 14.7 188 16-249 10-203 (206)
31 PRK08883 ribulose-phosphate 3- 97.4 0.0026 5.6E-08 56.2 12.0 137 81-248 74-211 (220)
32 TIGR00262 trpA tryptophan synt 97.4 0.0032 7E-08 56.8 12.2 121 81-238 108-232 (256)
33 cd04726 KGPDC_HPS 3-Keto-L-gul 97.2 0.01 2.2E-07 50.5 13.4 181 15-246 10-200 (202)
34 CHL00200 trpA tryptophan synth 97.1 0.014 3E-07 53.0 13.8 118 81-237 112-235 (263)
35 PRK00278 trpC indole-3-glycero 97.0 0.014 3E-07 52.8 12.5 153 46-246 100-254 (260)
36 PRK01130 N-acetylmannosamine-6 96.8 0.27 5.8E-06 42.8 18.2 34 204-238 173-207 (221)
37 PLN02334 ribulose-phosphate 3- 96.6 0.093 2E-06 46.2 14.1 134 81-246 81-216 (229)
38 cd04730 NPD_like 2-Nitropropan 96.5 0.058 1.3E-06 47.0 12.5 119 79-238 71-190 (236)
39 PRK13307 bifunctional formalde 96.4 0.07 1.5E-06 51.2 12.9 133 68-246 234-372 (391)
40 PF03437 BtpA: BtpA family; I 96.3 0.0047 1E-07 55.9 4.4 146 59-235 80-229 (254)
41 TIGR01768 GGGP-family geranylg 96.3 0.067 1.4E-06 47.6 11.3 153 80-238 19-213 (223)
42 PRK00043 thiE thiamine-phospha 96.1 0.092 2E-06 44.8 11.4 124 80-245 73-201 (212)
43 TIGR00259 thylakoid_BtpA membr 95.9 0.012 2.6E-07 53.4 5.1 132 80-235 94-229 (257)
44 PRK07028 bifunctional hexulose 95.9 0.13 2.8E-06 49.5 12.5 131 77-246 70-204 (430)
45 cd04723 HisA_HisF Phosphoribos 95.9 0.069 1.5E-06 47.3 9.8 129 80-238 92-223 (233)
46 cd04732 HisA HisA. Phosphorib 95.9 0.092 2E-06 45.8 10.3 128 81-238 88-224 (234)
47 PTZ00170 D-ribulose-5-phosphat 95.7 0.16 3.4E-06 45.0 11.2 144 66-246 69-215 (228)
48 PRK00748 1-(5-phosphoribosyl)- 95.6 0.081 1.8E-06 46.2 9.1 58 167-238 167-225 (233)
49 PRK08091 ribulose-phosphate 3- 95.5 0.33 7.1E-06 43.3 12.5 138 81-249 84-224 (228)
50 PRK04180 pyridoxal biosynthesi 95.3 0.089 1.9E-06 48.5 8.2 34 204-238 203-239 (293)
51 PF00290 Trp_syntA: Tryptophan 95.1 0.22 4.7E-06 45.2 10.3 121 81-238 108-231 (259)
52 TIGR00007 phosphoribosylformim 95.1 0.15 3.3E-06 44.5 9.0 35 204-238 189-223 (230)
53 cd04731 HisF The cyclase subun 94.8 0.35 7.6E-06 42.6 10.6 45 204-248 193-240 (243)
54 PRK04169 geranylgeranylglycery 94.8 0.045 9.7E-07 48.9 4.8 54 172-238 165-218 (232)
55 PRK09722 allulose-6-phosphate 94.8 1.4 3E-05 39.4 14.2 138 81-248 75-215 (229)
56 PRK08745 ribulose-phosphate 3- 94.8 0.89 1.9E-05 40.3 12.9 137 81-248 78-215 (223)
57 cd00564 TMP_TenI Thiamine mono 94.7 0.66 1.4E-05 38.5 11.5 44 204-248 150-194 (196)
58 cd00958 DhnA Class I fructose- 94.7 1.6 3.5E-05 38.1 14.4 200 12-249 15-231 (235)
59 PRK01033 imidazole glycerol ph 94.5 0.28 6.1E-06 44.1 9.3 62 162-237 168-230 (258)
60 COG0159 TrpA Tryptophan syntha 94.4 1.6 3.4E-05 39.9 13.8 119 81-237 115-237 (265)
61 cd02812 PcrB_like PcrB_like pr 94.3 0.073 1.6E-06 47.2 4.8 60 172-244 156-217 (219)
62 PRK14057 epimerase; Provisiona 94.2 1 2.2E-05 40.9 12.0 135 81-248 91-237 (254)
63 PRK13587 1-(5-phosphoribosyl)- 93.9 0.16 3.5E-06 45.1 6.4 132 81-241 91-229 (234)
64 CHL00162 thiG thiamin biosynth 93.8 0.16 3.4E-06 46.1 6.1 143 69-248 75-234 (267)
65 COG0434 SgcQ Predicted TIM-bar 93.8 0.053 1.2E-06 48.7 3.0 47 173-235 188-234 (263)
66 cd04727 pdxS PdxS is a subunit 93.7 0.29 6.4E-06 44.9 7.8 34 204-238 194-230 (283)
67 PRK14024 phosphoribosyl isomer 93.4 1.2 2.7E-05 39.5 11.2 70 163-246 163-237 (241)
68 TIGR03572 WbuZ glycosyl amidat 93.3 1.1 2.5E-05 39.1 10.7 33 204-236 197-230 (232)
69 PF01729 QRPTase_C: Quinolinat 93.3 0.2 4.3E-06 42.6 5.7 51 178-238 110-160 (169)
70 TIGR00343 pyridoxal 5'-phospha 93.3 0.39 8.5E-06 44.2 7.8 34 204-238 197-233 (287)
71 TIGR00433 bioB biotin syntheta 92.7 2.3 5E-05 38.3 12.2 134 81-235 126-275 (296)
72 PRK10550 tRNA-dihydrouridine s 92.7 0.15 3.2E-06 47.3 4.4 40 204-243 194-236 (312)
73 PRK04128 1-(5-phosphoribosyl)- 92.7 0.18 3.9E-06 44.7 4.7 43 204-246 73-116 (228)
74 COG0106 HisA Phosphoribosylfor 92.6 0.88 1.9E-05 41.0 9.0 154 47-238 65-226 (241)
75 cd02801 DUS_like_FMN Dihydrour 92.5 1.4 3E-05 38.1 10.0 39 204-242 183-223 (231)
76 TIGR00693 thiE thiamine-phosph 92.4 0.49 1.1E-05 40.1 6.8 73 160-246 117-194 (196)
77 PF00977 His_biosynth: Histidi 92.3 0.13 2.7E-06 45.5 3.3 134 75-237 82-224 (229)
78 PRK08508 biotin synthase; Prov 92.3 4.5 9.9E-05 36.7 13.5 141 76-238 97-254 (279)
79 cd04740 DHOD_1B_like Dihydroor 92.3 3 6.5E-05 37.8 12.3 151 79-247 106-276 (296)
80 TIGR00734 hisAF_rel hisA/hisF 92.3 0.15 3.3E-06 44.9 3.6 61 164-238 158-218 (221)
81 TIGR03572 WbuZ glycosyl amidat 92.1 0.39 8.5E-06 42.0 6.2 69 165-247 49-119 (232)
82 PRK06256 biotin synthase; Vali 91.9 4.3 9.2E-05 37.5 13.1 136 81-238 155-304 (336)
83 cd04731 HisF The cyclase subun 91.9 0.42 9E-06 42.2 6.0 45 204-248 71-117 (243)
84 cd02803 OYE_like_FMN_family Ol 91.8 4.8 0.0001 36.9 13.1 40 204-243 281-322 (327)
85 COG1411 Uncharacterized protei 91.4 0.32 6.8E-06 42.8 4.5 58 167-238 158-215 (229)
86 PRK08005 epimerase; Validated 91.3 7.1 0.00015 34.3 13.0 133 81-248 74-207 (210)
87 PRK13585 1-(5-phosphoribosyl)- 91.2 0.31 6.6E-06 42.8 4.5 43 204-247 193-238 (241)
88 cd00405 PRAI Phosphoribosylant 91.1 2.4 5.2E-05 36.3 9.8 51 172-238 136-186 (203)
89 PF01884 PcrB: PcrB family; I 91.1 0.25 5.5E-06 44.1 3.8 45 203-247 181-226 (230)
90 TIGR00007 phosphoribosylformim 91.0 0.47 1E-05 41.3 5.4 45 204-248 72-118 (230)
91 PRK10415 tRNA-dihydrouridine s 90.9 1.1 2.3E-05 41.7 8.0 43 204-246 194-239 (321)
92 TIGR01769 GGGP geranylgeranylg 90.8 0.39 8.4E-06 42.2 4.6 30 204-233 176-205 (205)
93 cd00452 KDPG_aldolase KDPG and 90.5 9.9 0.00021 32.3 14.4 161 15-237 13-175 (190)
94 PRK00748 1-(5-phosphoribosyl)- 90.4 0.57 1.2E-05 40.8 5.4 45 204-248 74-120 (233)
95 TIGR02814 pfaD_fam PfaD family 90.4 12 0.00027 36.6 14.9 73 160-237 184-257 (444)
96 TIGR00735 hisF imidazoleglycer 89.8 0.55 1.2E-05 42.0 4.9 45 204-248 74-120 (254)
97 COG1646 Predicted phosphate-bi 89.2 1 2.2E-05 40.4 6.0 46 205-250 192-239 (240)
98 TIGR02129 hisA_euk phosphoribo 89.2 0.71 1.5E-05 41.8 5.1 44 204-248 76-125 (253)
99 PRK07428 nicotinate-nucleotide 88.9 1.3 2.7E-05 40.9 6.6 53 176-238 224-276 (288)
100 cd04733 OYE_like_2_FMN Old yel 88.7 6.7 0.00015 36.5 11.5 39 204-242 292-332 (338)
101 PF00834 Ribul_P_3_epim: Ribul 87.9 1.5 3.2E-05 38.2 6.1 124 80-236 72-197 (201)
102 PRK14114 1-(5-phosphoribosyl)- 87.3 0.73 1.6E-05 41.2 3.9 139 79-247 86-239 (241)
103 PRK02083 imidazole glycerol ph 87.3 0.98 2.1E-05 40.2 4.8 44 204-247 197-243 (253)
104 TIGR01949 AroFGH_arch predicte 87.2 21 0.00046 31.8 15.0 193 13-247 31-242 (258)
105 PRK01033 imidazole glycerol ph 87.2 1.3 2.8E-05 39.8 5.5 45 204-248 74-120 (258)
106 TIGR00735 hisF imidazoleglycer 87.0 8 0.00017 34.5 10.5 44 204-247 199-245 (254)
107 PLN02389 biotin synthase 86.8 30 0.00065 33.1 17.6 141 79-237 179-333 (379)
108 PRK07455 keto-hydroxyglutarate 86.7 8.3 0.00018 33.0 10.0 110 80-238 76-185 (187)
109 cd02932 OYE_YqiM_FMN Old yello 86.7 6.7 0.00015 36.4 10.2 39 204-242 290-330 (336)
110 COG0269 SgbH 3-hexulose-6-phos 86.6 8.4 0.00018 34.2 10.1 178 14-238 12-197 (217)
111 PRK07226 fructose-bisphosphate 86.0 26 0.00056 31.5 13.9 198 14-248 35-247 (267)
112 PF02310 B12-binding: B12 bind 85.9 2.6 5.7E-05 32.4 6.0 52 175-235 61-113 (121)
113 TIGR01919 hisA-trpF 1-(5-phosp 85.5 0.84 1.8E-05 40.8 3.4 62 163-238 166-230 (243)
114 cd01572 QPRTase Quinolinate ph 85.4 2.6 5.6E-05 38.4 6.5 58 159-238 202-259 (268)
115 COG0042 tRNA-dihydrouridine sy 85.3 1.2 2.6E-05 41.6 4.4 40 205-244 199-241 (323)
116 PRK02083 imidazole glycerol ph 85.3 1.4 3.1E-05 39.1 4.7 45 204-248 74-120 (253)
117 cd02068 radical_SAM_B12_BD B12 85.3 5.3 0.00011 31.4 7.6 63 175-248 48-110 (127)
118 PF03932 CutC: CutC family; I 85.1 2.9 6.2E-05 36.6 6.4 150 41-229 34-195 (201)
119 cd02933 OYE_like_FMN Old yello 84.5 15 0.00032 34.4 11.4 49 184-242 275-324 (338)
120 cd02067 B12-binding B12 bindin 84.3 5.1 0.00011 31.1 7.0 51 176-235 61-111 (119)
121 TIGR03151 enACPred_II putative 84.1 17 0.00036 33.7 11.3 113 82-238 81-195 (307)
122 PRK13585 1-(5-phosphoribosyl)- 84.1 2.2 4.9E-05 37.3 5.4 45 204-248 76-122 (241)
123 COG2069 CdhD CO dehydrogenase/ 83.3 2.8 6.1E-05 39.2 5.7 74 169-249 171-248 (403)
124 cd04732 HisA HisA. Phosphorib 83.2 2.5 5.4E-05 36.7 5.3 75 158-248 43-119 (234)
125 PRK13306 ulaD 3-keto-L-gulonat 83.2 26 0.00057 30.6 11.8 183 15-245 13-204 (216)
126 PRK04128 1-(5-phosphoribosyl)- 82.3 1.1 2.3E-05 39.8 2.6 124 79-238 86-216 (228)
127 PRK08649 inosine 5-monophospha 82.1 13 0.00029 35.4 10.1 129 80-237 146-289 (368)
128 PRK07259 dihydroorotate dehydr 82.0 21 0.00046 32.4 11.2 43 204-247 234-279 (301)
129 PF01183 Glyco_hydro_25: Glyco 82.0 7.4 0.00016 32.5 7.6 120 74-212 5-129 (181)
130 COG1908 FrhD Coenzyme F420-red 82.0 1.1 2.3E-05 36.4 2.2 36 202-238 30-65 (132)
131 TIGR01334 modD putative molybd 82.0 6.7 0.00014 36.0 7.7 50 176-235 216-265 (277)
132 PRK09997 hydroxypyruvate isome 81.9 16 0.00034 32.2 10.0 161 7-189 4-168 (258)
133 cd02930 DCR_FMN 2,4-dienoyl-Co 81.9 20 0.00043 33.6 11.1 39 204-242 276-316 (353)
134 COG3142 CutC Uncharacterized p 81.7 8.6 0.00019 34.5 8.0 151 41-227 35-194 (241)
135 TIGR02026 BchE magnesium-proto 81.6 9.4 0.0002 37.5 9.2 73 158-248 62-135 (497)
136 cd02810 DHOD_DHPD_FMN Dihydroo 81.3 40 0.00087 30.2 12.8 34 204-238 243-277 (289)
137 cd06412 GH25_CH-type CH-type ( 81.3 33 0.00072 29.3 12.9 119 74-212 8-137 (199)
138 PRK13586 1-(5-phosphoribosyl)- 81.2 1.8 3.9E-05 38.5 3.7 61 163-238 163-223 (232)
139 COG0036 Rpe Pentose-5-phosphat 81.0 40 0.00087 30.0 12.1 134 81-248 77-213 (220)
140 cd06525 GH25_Lyc-like Lyc mura 80.9 32 0.00069 29.0 11.1 81 74-168 7-93 (184)
141 cd04743 NPD_PKS 2-Nitropropane 80.1 45 0.00098 31.3 12.7 124 81-238 75-207 (320)
142 PRK14024 phosphoribosyl isomer 80.0 4.4 9.5E-05 35.9 5.8 45 204-248 75-121 (241)
143 PRK07695 transcriptional regul 79.7 9.1 0.0002 32.7 7.5 34 204-238 149-182 (201)
144 PRK13587 1-(5-phosphoribosyl)- 79.6 3.2 7E-05 36.8 4.7 45 204-248 76-122 (234)
145 PRK05848 nicotinate-nucleotide 79.3 1.9 4.1E-05 39.5 3.2 52 177-238 211-262 (273)
146 PRK07896 nicotinate-nucleotide 79.2 3 6.6E-05 38.5 4.6 53 176-238 227-279 (289)
147 PRK08385 nicotinate-nucleotide 79.0 3.6 7.8E-05 37.8 5.0 53 178-238 212-264 (278)
148 TIGR01919 hisA-trpF 1-(5-phosp 78.7 4.4 9.6E-05 36.2 5.4 40 205-244 75-115 (243)
149 cd01568 QPRTase_NadC Quinolina 78.6 7.7 0.00017 35.2 6.9 58 160-237 202-259 (269)
150 cd04742 NPD_FabD 2-Nitropropan 78.5 69 0.0015 31.2 14.4 69 165-237 183-252 (418)
151 PRK06096 molybdenum transport 78.5 9.7 0.00021 35.1 7.6 51 175-235 216-266 (284)
152 cd01137 PsaA Metal binding pro 78.1 18 0.0004 32.8 9.4 74 144-228 162-251 (287)
153 TIGR03234 OH-pyruv-isom hydrox 77.7 47 0.001 28.9 12.1 80 108-189 84-167 (254)
154 PRK08057 cobalt-precorrin-6x r 76.9 4.1 8.8E-05 36.7 4.6 52 71-131 173-224 (248)
155 PRK02615 thiamine-phosphate py 76.7 11 0.00023 35.8 7.5 65 159-238 260-327 (347)
156 TIGR00737 nifR3_yhdG putative 76.6 3.1 6.8E-05 38.3 3.9 41 204-244 192-235 (319)
157 PF01207 Dus: Dihydrouridine s 76.2 2 4.3E-05 39.7 2.5 38 205-242 184-224 (309)
158 cd00331 IGPS Indole-3-glycerol 76.1 5.2 0.00011 34.5 5.0 45 204-248 72-117 (217)
159 cd01573 modD_like ModD; Quinol 76.1 12 0.00025 34.2 7.4 57 160-235 204-260 (272)
160 TIGR01304 IMP_DH_rel_2 IMP deh 75.4 26 0.00057 33.4 9.9 56 178-237 233-288 (369)
161 PF00977 His_biosynth: Histidi 75.4 3.6 7.8E-05 36.2 3.8 44 205-248 74-119 (229)
162 cd00599 GH25_muramidase Endo-N 75.2 24 0.00052 29.4 8.7 114 74-212 7-127 (186)
163 COG0106 HisA Phosphoribosylfor 74.6 6.2 0.00013 35.6 5.1 45 204-248 75-121 (241)
164 PRK09140 2-dehydro-3-deoxy-6-p 73.8 60 0.0013 28.2 16.3 164 15-238 19-184 (206)
165 TIGR03772 anch_rpt_subst ancho 73.0 41 0.0009 33.3 10.8 95 142-247 354-469 (479)
166 TIGR03699 mena_SCO4550 menaqui 72.8 56 0.0012 30.2 11.3 139 78-234 143-302 (340)
167 TIGR00683 nanA N-acetylneurami 71.9 29 0.00063 31.6 9.0 50 177-234 51-104 (290)
168 TIGR00078 nadC nicotinate-nucl 71.9 12 0.00027 33.9 6.5 55 160-236 199-253 (265)
169 PRK11815 tRNA-dihydrouridine s 71.6 7.9 0.00017 36.1 5.3 41 204-246 205-248 (333)
170 PRK07107 inosine 5-monophospha 71.5 52 0.0011 32.7 11.2 50 181-235 334-383 (502)
171 cd04734 OYE_like_3_FMN Old yel 71.2 4.7 0.0001 37.8 3.7 40 204-243 285-326 (343)
172 PRK06267 hypothetical protein; 71.1 80 0.0017 29.6 12.0 137 76-235 115-271 (350)
173 PRK05742 nicotinate-nucleotide 70.6 12 0.00027 34.2 6.2 50 176-238 217-266 (277)
174 PF00697 PRAI: N-(5'phosphorib 69.7 1.3 2.9E-05 38.1 -0.3 59 162-235 119-178 (197)
175 PRK01060 endonuclease IV; Prov 69.5 28 0.00061 30.8 8.2 79 108-189 89-168 (281)
176 KOG1606 Stationary phase-induc 68.9 4.9 0.00011 35.9 3.1 29 209-238 215-243 (296)
177 PF05690 ThiG: Thiazole biosyn 68.6 4.8 0.0001 36.3 2.9 141 69-246 67-218 (247)
178 cd06413 GH25_muramidase_1 Unch 68.5 72 0.0016 27.0 12.7 116 75-212 11-133 (191)
179 PRK08072 nicotinate-nucleotide 68.3 20 0.00044 32.8 7.1 50 176-238 216-265 (277)
180 COG0107 HisF Imidazoleglycerol 68.3 7 0.00015 35.2 3.9 63 174-243 51-114 (256)
181 PLN02446 (5-phosphoribosyl)-5- 68.2 8.1 0.00018 35.2 4.4 43 205-248 84-132 (262)
182 TIGR01037 pyrD_sub1_fam dihydr 67.1 98 0.0021 28.0 14.7 44 204-248 234-280 (300)
183 PRK08662 nicotinate phosphorib 66.5 8.7 0.00019 36.3 4.4 54 179-238 240-293 (343)
184 PRK09545 znuA high-affinity zi 66.4 85 0.0018 28.9 10.9 72 144-228 190-277 (311)
185 cd01569 PBEF_like pre-B-cell c 66.0 7.1 0.00015 37.8 3.8 61 178-238 292-367 (407)
186 PLN02898 HMP-P kinase/thiamin- 65.7 23 0.0005 34.8 7.4 68 159-238 410-480 (502)
187 PF00218 IGPS: Indole-3-glycer 65.6 50 0.0011 29.9 9.0 116 85-238 128-243 (254)
188 PRK12858 tagatose 1,6-diphosph 65.2 1E+02 0.0023 29.0 11.4 150 76-238 107-281 (340)
189 PRK09856 fructoselysine 3-epim 65.0 62 0.0013 28.5 9.5 106 81-187 53-169 (275)
190 cd02929 TMADH_HD_FMN Trimethyl 65.0 65 0.0014 30.5 10.1 39 204-242 289-329 (370)
191 PLN02446 (5-phosphoribosyl)-5- 64.9 8.5 0.00018 35.1 3.9 33 204-236 207-241 (262)
192 PRK14114 1-(5-phosphoribosyl)- 64.2 13 0.00028 33.2 4.9 42 205-246 74-116 (241)
193 TIGR03551 F420_cofH 7,8-dideme 64.2 1E+02 0.0022 28.7 11.1 151 81-248 144-331 (343)
194 cd02071 MM_CoA_mut_B12_BD meth 64.2 14 0.00031 29.1 4.7 53 177-238 62-114 (122)
195 PRK13586 1-(5-phosphoribosyl)- 64.0 14 0.0003 32.8 5.0 44 205-248 74-119 (232)
196 TIGR03249 KdgD 5-dehydro-4-deo 63.9 89 0.0019 28.4 10.5 95 141-249 115-226 (296)
197 COG0134 TrpC Indole-3-glycerol 63.6 34 0.00073 31.1 7.5 106 106-243 141-247 (254)
198 PHA02594 nadV nicotinamide pho 63.0 9.7 0.00021 37.6 4.1 56 183-238 305-375 (470)
199 PF02581 TMP-TENI: Thiamine mo 62.7 35 0.00075 28.6 7.1 65 159-235 115-179 (180)
200 PRK13347 coproporphyrinogen II 62.7 1.5E+02 0.0033 28.7 12.8 109 79-196 153-279 (453)
201 PRK11572 copper homeostasis pr 62.7 17 0.00037 32.9 5.4 151 41-230 35-195 (248)
202 TIGR00715 precor6x_red precorr 62.4 9.3 0.0002 34.5 3.7 80 38-131 153-232 (256)
203 PRK02261 methylaspartate mutas 62.2 18 0.00038 29.5 5.0 55 176-238 65-124 (137)
204 smart00518 AP2Ec AP endonuclea 61.7 46 0.00099 29.3 8.0 80 107-190 83-163 (273)
205 cd02809 alpha_hydroxyacid_oxid 61.6 85 0.0018 28.6 9.9 34 204-238 227-261 (299)
206 PRK13957 indole-3-glycerol-pho 61.6 1.3E+02 0.0027 27.3 11.5 119 85-243 121-241 (247)
207 cd06522 GH25_AtlA-like AtlA is 61.1 1E+02 0.0022 26.1 10.5 48 74-124 8-58 (192)
208 cd07938 DRE_TIM_HMGL 3-hydroxy 61.0 1.2E+02 0.0026 27.4 10.7 40 114-153 79-121 (274)
209 PRK06559 nicotinate-nucleotide 60.8 11 0.00023 35.0 3.8 49 177-238 226-274 (290)
210 PRK01222 N-(5'-phosphoribosyl) 60.7 72 0.0016 27.8 8.9 29 205-233 155-183 (210)
211 PRK09198 putative nicotinate p 59.9 11 0.00025 37.0 4.0 61 178-238 295-370 (463)
212 COG0214 SNZ1 Pyridoxine biosyn 59.9 8.2 0.00018 35.0 2.8 29 209-238 214-242 (296)
213 PRK06106 nicotinate-nucleotide 59.7 10 0.00022 34.9 3.5 49 177-238 223-271 (281)
214 PRK06543 nicotinate-nucleotide 59.6 8.1 0.00017 35.6 2.8 49 177-238 222-270 (281)
215 KOG0538 Glycolate oxidase [Ene 59.4 13 0.00028 35.0 4.1 35 203-237 277-311 (363)
216 PRK10605 N-ethylmaleimide redu 59.1 11 0.00025 35.5 3.8 40 205-244 293-333 (362)
217 PF03060 NMO: Nitronate monoox 59.1 42 0.00092 31.1 7.6 117 81-237 106-223 (330)
218 cd01571 NAPRTase_B Nicotinate 58.4 14 0.0003 34.2 4.1 52 178-238 227-278 (302)
219 COG2185 Sbm Methylmalonyl-CoA 57.9 31 0.00067 28.7 5.7 56 187-249 30-88 (143)
220 PRK06978 nicotinate-nucleotide 56.9 10 0.00022 35.2 2.9 49 177-238 234-282 (294)
221 TIGR03471 HpnJ hopanoid biosyn 56.2 27 0.00058 33.9 6.0 53 173-234 75-128 (472)
222 PRK09427 bifunctional indole-3 56.1 1E+02 0.0022 30.3 9.9 114 86-238 130-243 (454)
223 PRK05692 hydroxymethylglutaryl 55.9 1.6E+02 0.0035 26.8 11.2 40 114-153 85-127 (287)
224 PRK09016 quinolinate phosphori 55.8 9.9 0.00021 35.3 2.7 49 177-238 237-285 (296)
225 PF09370 TIM-br_sig_trns: TIM- 55.6 19 0.00041 33.0 4.4 175 18-238 66-250 (268)
226 PF14488 DUF4434: Domain of un 55.4 1.2E+02 0.0027 25.3 12.3 106 81-191 26-150 (166)
227 PF02662 FlpD: Methyl-viologen 55.2 8.1 0.00018 31.0 1.8 35 203-238 30-64 (124)
228 cd06542 GH18_EndoS-like Endo-b 55.0 88 0.0019 27.4 8.6 87 106-193 49-141 (255)
229 PF02571 CbiJ: Precorrin-6x re 54.8 16 0.00034 32.9 3.8 106 9-131 110-228 (249)
230 cd00516 PRTase_typeII Phosphor 54.7 24 0.00053 31.6 5.1 59 177-238 214-272 (281)
231 cd00377 ICL_PEPM Members of th 54.6 63 0.0014 28.7 7.6 73 16-100 158-231 (243)
232 PRK07188 nicotinate phosphorib 54.5 21 0.00045 34.0 4.7 53 178-238 262-315 (352)
233 cd02911 arch_FMN Archeal FMN-b 53.7 17 0.00037 32.2 3.8 39 204-244 191-231 (233)
234 PRK03512 thiamine-phosphate py 53.5 68 0.0015 27.9 7.5 66 159-238 122-191 (211)
235 cd00019 AP2Ec AP endonuclease 53.4 88 0.0019 27.7 8.4 81 108-189 85-165 (279)
236 PRK04531 acetylglutamate kinas 53.4 27 0.00059 33.6 5.4 80 81-166 80-171 (398)
237 COG0329 DapA Dihydrodipicolina 53.1 1.1E+02 0.0024 28.1 9.2 68 173-248 48-129 (299)
238 COG4064 MtrG Tetrahydromethano 53.1 3.4 7.3E-05 30.3 -0.6 35 177-211 12-56 (75)
239 cd02905 Macro_GDAP2_like Macro 53.1 28 0.00061 28.4 4.7 28 162-192 110-139 (140)
240 cd06523 GH25_PlyB-like PlyB is 52.7 1.4E+02 0.003 25.0 9.4 47 75-124 8-55 (177)
241 cd04747 OYE_like_5_FMN Old yel 52.4 1.4E+02 0.003 28.4 9.9 40 204-243 280-339 (361)
242 PRK13209 L-xylulose 5-phosphat 52.4 55 0.0012 29.0 6.9 77 107-187 98-175 (283)
243 cd06419 GH25_muramidase_2 Unch 51.6 1.5E+02 0.0034 25.3 12.4 115 74-212 15-136 (190)
244 PF03982 DAGAT: Diacylglycerol 51.0 52 0.0011 30.4 6.7 84 114-198 172-280 (297)
245 COG0135 TrpF Phosphoribosylant 50.9 75 0.0016 28.0 7.3 125 72-234 56-184 (208)
246 TIGR00742 yjbN tRNA dihydrouri 49.8 32 0.0007 32.0 5.2 41 204-246 195-238 (318)
247 COG0502 BioB Biotin synthase a 49.1 2.4E+02 0.0052 26.7 11.7 131 80-234 146-295 (335)
248 PF01261 AP_endonuc_2: Xylose 48.1 52 0.0011 26.9 5.8 135 36-189 10-154 (213)
249 PRK13813 orotidine 5'-phosphat 48.1 1.7E+02 0.0038 24.9 13.9 147 66-248 59-208 (215)
250 cd04735 OYE_like_4_FMN Old yel 47.9 12 0.00026 35.1 2.0 39 204-243 284-324 (353)
251 PF00150 Cellulase: Cellulase 47.8 83 0.0018 27.2 7.2 24 108-131 62-85 (281)
252 PRK06512 thiamine-phosphate py 47.8 57 0.0012 28.7 6.1 66 159-238 131-197 (221)
253 cd06416 GH25_Lys1-like Lys-1 i 47.3 1.7E+02 0.0038 24.6 11.0 48 74-124 8-55 (196)
254 PRK05718 keto-hydroxyglutarate 47.0 2E+02 0.0043 25.2 15.7 172 15-248 24-204 (212)
255 PLN02716 nicotinate-nucleotide 46.9 17 0.00038 33.9 2.8 48 178-238 248-295 (308)
256 cd04738 DHOD_2_like Dihydrooro 46.7 1.3E+02 0.0028 27.9 8.6 42 204-246 280-325 (327)
257 PF02579 Nitro_FeMo-Co: Dinitr 46.2 51 0.0011 23.9 4.9 51 71-133 36-86 (94)
258 PRK08445 hypothetical protein; 45.8 2.6E+02 0.0056 26.2 12.1 152 79-248 145-331 (348)
259 cd01018 ZntC Metal binding pro 45.7 2.2E+02 0.0047 25.3 10.8 124 107-247 117-259 (266)
260 PLN02617 imidazole glycerol ph 45.6 32 0.00069 34.5 4.6 48 183-238 300-359 (538)
261 TIGR00423 radical SAM domain p 45.5 2.2E+02 0.0047 26.0 9.9 105 80-193 109-233 (309)
262 TIGR01501 MthylAspMutase methy 44.8 63 0.0014 26.4 5.6 55 176-238 63-122 (134)
263 cd00951 KDGDH 5-dehydro-4-deox 44.6 1.8E+02 0.0038 26.4 9.1 22 110-131 23-44 (289)
264 PRK15108 biotin synthase; Prov 44.4 2.7E+02 0.0059 26.0 16.2 156 72-248 131-308 (345)
265 TIGR00538 hemN oxygen-independ 44.4 3E+02 0.0066 26.6 11.9 118 81-215 154-289 (455)
266 PRK13958 N-(5'-phosphoribosyl) 44.3 20 0.00043 31.2 2.7 45 171-232 136-181 (207)
267 COG3981 Predicted acetyltransf 43.9 72 0.0016 27.4 5.9 106 5-126 30-135 (174)
268 PRK08999 hypothetical protein; 43.7 89 0.0019 28.3 7.0 65 159-235 246-310 (312)
269 PF04210 MtrG: Tetrahydrometha 43.5 6.4 0.00014 28.8 -0.4 32 180-211 22-53 (70)
270 cd01017 AdcA Metal binding pro 43.5 1.4E+02 0.003 26.8 8.1 73 143-228 157-245 (282)
271 PF12327 FtsZ_C: FtsZ family, 43.1 19 0.0004 27.5 2.1 74 125-216 4-80 (95)
272 cd02931 ER_like_FMN Enoate red 43.0 30 0.00064 32.9 3.9 40 204-243 305-346 (382)
273 cd01019 ZnuA Zinc binding prot 43.0 1.6E+02 0.0034 26.7 8.5 59 159-228 179-253 (286)
274 PRK09243 nicotinate phosphorib 42.9 39 0.00084 33.3 4.7 61 174-238 260-321 (464)
275 PRK01026 tetrahydromethanopter 42.8 6.4 0.00014 29.3 -0.5 33 180-212 25-57 (77)
276 cd04723 HisA_HisF Phosphoribos 42.7 58 0.0013 28.6 5.5 44 205-248 79-123 (233)
277 COG2099 CobK Precorrin-6x redu 42.5 1.3E+02 0.0029 27.4 7.7 111 3-126 101-227 (257)
278 cd03174 DRE_TIM_metallolyase D 42.4 2.3E+02 0.0049 24.6 16.4 155 16-193 17-188 (265)
279 PF10137 TIR-like: Predicted n 42.1 32 0.0007 27.8 3.4 28 92-127 2-30 (125)
280 cd08205 RuBisCO_IV_RLP Ribulos 42.1 2.2E+02 0.0047 27.1 9.5 99 3-113 197-304 (367)
281 PRK13305 sgbH 3-keto-L-gulonat 42.0 2.4E+02 0.0053 24.8 13.4 182 1-238 1-196 (218)
282 TIGR01149 mtrG N5-methyltetrah 41.6 6.6 0.00014 28.7 -0.6 34 180-213 22-55 (70)
283 cd07942 DRE_TIM_LeuA Mycobacte 41.4 1.8E+02 0.0039 26.6 8.6 54 114-167 81-147 (284)
284 PRK13523 NADPH dehydrogenase N 41.3 18 0.00039 33.9 2.1 43 204-246 275-320 (337)
285 PLN02746 hydroxymethylglutaryl 41.2 2.2E+02 0.0048 27.0 9.3 43 112-154 125-170 (347)
286 COG2730 BglC Endoglucanase [Ca 40.9 2.3E+02 0.005 27.1 9.6 134 60-195 55-217 (407)
287 COG2022 ThiG Uncharacterized e 40.8 44 0.00096 30.3 4.3 141 68-245 73-224 (262)
288 COG0635 HemN Coproporphyrinoge 40.5 3.5E+02 0.0075 26.1 15.4 157 8-196 94-264 (416)
289 PRK13802 bifunctional indole-3 40.1 2.2E+02 0.0047 29.7 9.8 118 85-240 130-248 (695)
290 PRK08208 coproporphyrinogen II 40.0 3.5E+02 0.0075 26.0 11.0 109 80-196 143-263 (430)
291 PRK03620 5-dehydro-4-deoxygluc 39.9 2.2E+02 0.0049 25.9 9.1 79 106-232 26-107 (303)
292 COG3836 HpcH 2,4-dihydroxyhept 39.8 19 0.00042 32.5 1.9 144 52-237 8-179 (255)
293 PRK07565 dihydroorotate dehydr 39.6 3.1E+02 0.0067 25.3 11.3 44 204-248 239-286 (334)
294 TIGR00542 hxl6Piso_put hexulos 39.0 1.9E+02 0.0041 25.6 8.3 59 108-168 94-154 (279)
295 TIGR00640 acid_CoA_mut_C methy 38.8 88 0.0019 25.2 5.5 53 177-238 65-117 (132)
296 PRK12290 thiE thiamine-phospha 38.6 1.4E+02 0.0031 29.3 7.8 75 158-238 319-397 (437)
297 PF01297 TroA: Periplasmic sol 38.1 2.1E+02 0.0046 25.0 8.4 91 144-247 137-247 (256)
298 cd02922 FCB2_FMN Flavocytochro 37.9 73 0.0016 30.1 5.6 36 203-238 270-305 (344)
299 COG0157 NadC Nicotinate-nucleo 37.9 43 0.00094 30.9 3.9 51 177-238 217-267 (280)
300 PLN02274 inosine-5'-monophosph 37.8 2.2E+02 0.0048 28.3 9.2 34 204-237 351-384 (505)
301 cd01016 TroA Metal binding pro 37.5 1.9E+02 0.0041 26.0 8.1 69 144-223 146-230 (276)
302 COG2185 Sbm Methylmalonyl-CoA 36.9 1.1E+02 0.0023 25.5 5.8 59 179-246 77-135 (143)
303 cd00851 MTH1175 This uncharact 36.9 79 0.0017 23.3 4.7 45 76-132 51-95 (103)
304 PRK06552 keto-hydroxyglutarate 36.5 2.9E+02 0.0063 24.1 12.0 171 16-247 23-201 (213)
305 cd02065 B12-binding_like B12 b 36.4 74 0.0016 24.1 4.6 29 204-236 80-108 (125)
306 PF07745 Glyco_hydro_53: Glyco 36.2 71 0.0015 30.1 5.2 46 80-131 29-81 (332)
307 KOG4175 Tryptophan synthase al 35.8 51 0.0011 29.4 3.9 57 170-237 180-239 (268)
308 cd00952 CHBPH_aldolase Trans-o 35.6 2.6E+02 0.0055 25.7 8.7 51 177-235 58-112 (309)
309 TIGR00736 nifR3_rel_arch TIM-b 35.3 46 0.001 29.7 3.6 33 205-238 192-225 (231)
310 COG2249 MdaB Putative NADPH-qu 35.3 63 0.0014 27.8 4.3 70 91-173 4-82 (189)
311 cd00598 GH18_chitinase-like Th 35.2 2.6E+02 0.0056 23.2 8.1 84 107-194 48-138 (210)
312 PF01301 Glyco_hydro_35: Glyco 35.1 59 0.0013 30.2 4.5 50 81-130 30-85 (319)
313 smart00796 AHS1 Allophanate hy 35.0 81 0.0017 27.4 5.0 61 157-228 48-113 (201)
314 TIGR01306 GMP_reduct_2 guanosi 34.8 2.9E+02 0.0063 25.9 8.9 32 204-235 198-229 (321)
315 cd02904 Macro_H2A_like Macro d 34.6 1.5E+02 0.0032 25.6 6.5 32 162-196 130-163 (186)
316 cd06414 GH25_LytC-like The Lyt 34.4 2.8E+02 0.0061 23.3 13.8 123 74-213 8-136 (191)
317 PRK09517 multifunctional thiam 34.1 1.1E+02 0.0023 32.0 6.5 67 160-238 129-199 (755)
318 TIGR00734 hisAF_rel hisA/hisF 34.1 64 0.0014 28.3 4.3 39 205-243 78-119 (221)
319 COG0351 ThiD Hydroxymethylpyri 33.9 60 0.0013 29.7 4.1 62 120-192 33-97 (263)
320 cd00945 Aldolase_Class_I Class 33.9 2.6E+02 0.0056 22.7 12.4 18 111-128 68-85 (201)
321 PLN02417 dihydrodipicolinate s 33.6 3.6E+02 0.0077 24.3 10.7 22 226-247 193-215 (280)
322 TIGR01305 GMP_reduct_1 guanosi 33.2 4.3E+02 0.0094 25.1 11.8 134 59-233 45-178 (343)
323 PLN02411 12-oxophytodienoate r 33.2 51 0.0011 31.5 3.8 41 205-245 314-355 (391)
324 cd06415 GH25_Cpl1-like Cpl-1 l 33.1 63 0.0014 27.5 4.0 47 74-124 8-54 (196)
325 cd07945 DRE_TIM_CMS Leptospira 33.1 3.8E+02 0.0081 24.4 9.9 159 11-192 12-188 (280)
326 PTZ00314 inosine-5'-monophosph 32.7 5E+02 0.011 25.7 11.6 34 204-237 344-377 (495)
327 cd07948 DRE_TIM_HCS Saccharomy 32.6 2.3E+02 0.005 25.5 7.8 106 81-191 28-152 (262)
328 PRK09240 thiH thiamine biosynt 32.5 4.3E+02 0.0094 24.9 11.7 106 82-193 167-289 (371)
329 TIGR01513 NAPRTase_put putativ 32.2 62 0.0013 31.7 4.2 57 177-237 254-311 (443)
330 COG1027 AspA Aspartate ammonia 32.2 40 0.00087 32.8 2.8 26 169-194 231-256 (471)
331 PRK06294 coproporphyrinogen II 32.1 4.3E+02 0.0094 24.8 12.3 110 81-196 106-231 (370)
332 PRK08255 salicylyl-CoA 5-hydro 32.0 44 0.00096 34.7 3.4 38 204-241 687-726 (765)
333 PRK11320 prpB 2-methylisocitra 31.9 2.2E+02 0.0048 26.3 7.6 62 37-102 179-241 (292)
334 PF00478 IMPDH: IMP dehydrogen 31.6 3.8E+02 0.0082 25.6 9.2 119 80-235 112-242 (352)
335 PF00724 Oxidored_FMN: NADH:fl 31.2 65 0.0014 30.0 4.1 52 184-245 281-334 (341)
336 TIGR00097 HMP-P_kinase phospho 31.1 77 0.0017 27.8 4.4 41 140-191 51-91 (254)
337 PF02449 Glyco_hydro_42: Beta- 31.1 55 0.0012 30.7 3.6 46 80-129 15-68 (374)
338 TIGR02129 hisA_euk phosphoribo 30.8 62 0.0013 29.4 3.7 53 171-237 182-236 (253)
339 PRK06015 keto-hydroxyglutarate 30.8 66 0.0014 28.1 3.8 172 15-248 13-193 (201)
340 PF01715 IPPT: IPP transferase 30.7 21 0.00046 32.0 0.7 25 182-213 42-66 (253)
341 TIGR02317 prpB methylisocitrat 30.6 1.8E+02 0.0039 26.8 6.8 61 37-101 174-235 (285)
342 PRK10799 metal-binding protein 30.6 37 0.00081 30.2 2.3 52 83-150 181-232 (247)
343 PRK12616 pyridoxal kinase; Rev 30.3 78 0.0017 28.2 4.3 41 140-191 58-98 (270)
344 KOG4131 Ngg1-interacting facto 30.3 1.1E+02 0.0024 27.8 5.1 25 75-99 211-238 (272)
345 cd05400 NT_2-5OAS_ClassI-CCAas 30.3 1.9E+02 0.0041 22.8 6.2 56 179-236 2-57 (143)
346 cd00578 L-fuc_L-ara-isomerases 30.2 75 0.0016 30.7 4.4 64 168-238 3-75 (452)
347 COG0614 FepB ABC-type Fe3+-hyd 30.2 1.3E+02 0.0027 26.7 5.6 40 62-101 221-260 (319)
348 PRK13210 putative L-xylulose 5 30.0 2.3E+02 0.0051 24.7 7.3 60 108-168 94-154 (284)
349 cd06524 GH25_YegX-like YegX is 30.0 3.3E+02 0.0072 22.8 12.6 48 74-124 7-58 (194)
350 PF03129 HGTP_anticodon: Antic 30.0 44 0.00096 24.4 2.3 32 102-133 33-64 (94)
351 TIGR01306 GMP_reduct_2 guanosi 29.8 4.6E+02 0.01 24.6 9.4 120 75-233 45-165 (321)
352 TIGR03249 KdgD 5-dehydro-4-deo 29.3 3.9E+02 0.0084 24.2 8.8 23 109-131 27-49 (296)
353 cd00408 DHDPS-like Dihydrodipi 29.2 4E+02 0.0088 23.5 13.1 131 82-247 25-172 (281)
354 cd00950 DHDPS Dihydrodipicolin 29.1 4.1E+02 0.0089 23.6 13.0 138 81-247 27-175 (284)
355 cd02072 Glm_B12_BD B12 binding 29.0 1.3E+02 0.0028 24.5 4.9 53 177-237 62-119 (128)
356 KOG3798 Predicted Zn-dependent 28.9 60 0.0013 30.0 3.2 30 162-192 263-292 (343)
357 cd00861 ProRS_anticodon_short 28.6 51 0.0011 23.8 2.4 24 109-132 42-65 (94)
358 PRK07360 FO synthase subunit 2 28.6 4.5E+02 0.0097 24.8 9.3 56 80-135 165-232 (371)
359 PTZ00493 phosphomethylpyrimidi 28.6 90 0.0019 29.3 4.5 41 140-191 57-97 (321)
360 PF00478 IMPDH: IMP dehydrogen 28.5 91 0.002 29.7 4.5 153 39-233 7-177 (352)
361 PRK06934 flavodoxin; Provision 28.4 57 0.0012 28.9 3.0 121 107-247 73-216 (221)
362 cd02871 GH18_chitinase_D-like 28.3 3.5E+02 0.0075 24.7 8.3 82 106-192 58-141 (312)
363 PTZ00413 lipoate synthase; Pro 28.3 4.7E+02 0.01 25.4 9.3 21 103-123 305-325 (398)
364 PRK03170 dihydrodipicolinate s 28.2 4.4E+02 0.0095 23.6 12.9 129 82-246 29-175 (292)
365 TIGR00381 cdhD CO dehydrogenas 28.2 1.1E+02 0.0023 29.7 5.0 64 175-248 169-236 (389)
366 COG0324 MiaA tRNA delta(2)-iso 28.0 32 0.00069 32.2 1.4 17 202-218 91-107 (308)
367 PLN02783 diacylglycerol O-acyl 27.7 3.4E+02 0.0074 25.1 8.2 21 177-197 278-298 (315)
368 PF02679 ComA: (2R)-phospho-3- 27.7 1.5E+02 0.0032 26.8 5.5 70 81-154 90-159 (244)
369 TIGR03662 Chlor_Arch_YYY Chlor 27.5 57 0.0012 34.0 3.2 42 79-127 672-713 (723)
370 TIGR00449 tgt_general tRNA-gua 27.5 2.2E+02 0.0049 27.0 7.0 29 220-248 197-228 (367)
371 COG3370 Uncharacterized protei 27.3 42 0.0009 26.8 1.7 54 89-147 37-90 (113)
372 cd02940 DHPD_FMN Dihydropyrimi 27.1 1.2E+02 0.0026 27.6 5.1 43 204-247 252-298 (299)
373 PRK07379 coproporphyrinogen II 26.9 5.5E+02 0.012 24.4 11.1 115 73-196 111-243 (400)
374 COG2247 LytB Putative cell wal 26.9 87 0.0019 29.6 4.0 48 81-133 93-144 (337)
375 TIGR00238 KamA family protein. 26.8 1.2E+02 0.0027 28.2 5.1 104 82-194 214-318 (331)
376 PF01702 TGT: Queuine tRNA-rib 26.7 2E+02 0.0043 25.2 6.2 71 176-248 25-106 (238)
377 cd03332 LMO_FMN L-Lactate 2-mo 26.6 70 0.0015 30.7 3.5 35 203-237 307-341 (383)
378 PRK07094 biotin synthase; Prov 26.6 4.9E+02 0.011 23.6 12.7 131 81-232 132-279 (323)
379 PRK12331 oxaloacetate decarbox 26.6 6.2E+02 0.013 24.8 14.8 160 11-193 19-196 (448)
380 cd00952 CHBPH_aldolase Trans-o 26.4 5E+02 0.011 23.7 11.2 35 209-246 147-182 (309)
381 COG2049 DUR1 Allophanate hydro 26.4 74 0.0016 28.4 3.3 61 157-225 46-107 (223)
382 COG0327 Uncharacterized conser 26.4 48 0.001 29.8 2.2 23 75-97 194-219 (250)
383 cd01570 NAPRTase_A Nicotinate 26.2 83 0.0018 29.4 3.8 55 180-238 258-313 (327)
384 PRK05286 dihydroorotate dehydr 26.1 3.3E+02 0.0072 25.4 7.9 44 204-248 289-336 (344)
385 PRK09249 coproporphyrinogen II 26.0 6E+02 0.013 24.5 12.9 108 80-196 153-278 (453)
386 COG0803 LraI ABC-type metal io 26.0 4.1E+02 0.0088 24.3 8.3 68 148-226 182-264 (303)
387 TIGR03471 HpnJ hopanoid biosyn 25.8 2.1E+02 0.0046 27.7 6.8 54 81-134 290-354 (472)
388 PF12083 DUF3560: Domain of un 25.8 27 0.00058 28.5 0.4 10 92-101 45-55 (126)
389 COG0561 Cof Predicted hydrolas 25.6 4.4E+02 0.0096 22.8 8.7 84 89-192 10-98 (264)
390 COG4981 Enoyl reductase domain 25.5 2.1E+02 0.0045 29.3 6.5 84 145-237 161-257 (717)
391 PRK09936 hypothetical protein; 25.5 1.6E+02 0.0034 27.5 5.4 168 59-238 23-219 (296)
392 PRK01008 queuine tRNA-ribosylt 25.5 2.5E+02 0.0053 27.0 6.9 42 206-248 198-248 (372)
393 PF02836 Glyco_hydro_2_C: Glyc 25.5 1.9E+02 0.0041 26.0 6.0 96 81-192 42-148 (298)
394 TIGR01508 rib_reduct_arch 2,5- 25.3 75 0.0016 27.4 3.2 33 210-242 120-153 (210)
395 PF02682 AHS1: Allophanate hyd 25.2 48 0.001 28.8 1.9 59 157-226 48-110 (202)
396 PF03328 HpcH_HpaI: HpcH/HpaI 25.1 46 0.001 28.7 1.8 133 82-237 15-154 (221)
397 TIGR02370 pyl_corrinoid methyl 25.1 3.5E+02 0.0076 23.0 7.3 48 174-231 144-191 (197)
398 KOG3859 Septins (P-loop GTPase 24.9 59 0.0013 30.6 2.5 21 112-132 31-52 (406)
399 TIGR01304 IMP_DH_rel_2 IMP deh 24.9 1E+02 0.0022 29.4 4.2 32 204-236 188-219 (369)
400 TIGR03693 ocin_ThiF_like putat 24.9 1.8E+02 0.0039 30.0 6.0 86 122-222 408-500 (637)
401 cd04737 LOX_like_FMN L-Lactate 24.7 1.3E+02 0.0027 28.6 4.8 36 203-238 275-310 (351)
402 PRK12484 nicotinate phosphorib 24.3 1.2E+02 0.0027 29.7 4.7 60 174-237 253-313 (443)
403 TIGR00674 dapA dihydrodipicoli 24.1 5.2E+02 0.011 23.1 8.7 129 81-251 86-221 (285)
404 PF06200 tify: tify domain; I 24.0 38 0.00083 21.5 0.8 16 202-217 5-20 (36)
405 cd04235 AAK_CK AAK_CK: Carbama 24.0 5.9E+02 0.013 23.7 9.0 26 106-131 26-51 (308)
406 TIGR00430 Q_tRNA_tgt tRNA-guan 23.9 2.7E+02 0.0059 26.5 6.9 31 217-248 196-229 (368)
407 TIGR01303 IMP_DH_rel_1 IMP deh 23.9 1.5E+02 0.0032 29.4 5.2 47 179-235 250-296 (475)
408 TIGR02660 nifV_homocitr homoci 23.8 6.1E+02 0.013 23.8 10.0 16 177-192 168-183 (365)
409 KOG2335 tRNA-dihydrouridine sy 23.6 80 0.0017 30.2 3.2 37 205-241 204-243 (358)
410 PRK10343 RNA-binding protein Y 23.5 1.1E+02 0.0023 23.8 3.3 80 112-212 8-88 (97)
411 PRK13813 orotidine 5'-phosphat 23.5 3E+02 0.0066 23.3 6.7 32 81-116 178-210 (215)
412 cd04739 DHOD_like Dihydroorota 23.2 6E+02 0.013 23.5 11.7 44 204-248 237-284 (325)
413 PRK06843 inosine 5-monophospha 22.9 7.1E+02 0.015 24.2 11.9 34 204-237 256-289 (404)
414 PF00994 MoCF_biosynth: Probab 22.9 1.6E+02 0.0034 23.5 4.5 49 77-132 19-67 (144)
415 PRK10128 2-keto-3-deoxy-L-rham 22.8 60 0.0013 29.5 2.1 50 79-132 30-79 (267)
416 PRK12412 pyridoxal kinase; Rev 22.8 1.3E+02 0.0028 26.7 4.3 41 140-191 56-96 (268)
417 PF14871 GHL6: Hypothetical gl 22.8 1.9E+02 0.0041 23.4 4.9 47 81-129 6-65 (132)
418 cd07945 DRE_TIM_CMS Leptospira 22.7 5E+02 0.011 23.6 8.1 76 113-191 79-158 (280)
419 PRK14072 6-phosphofructokinase 22.6 1.3E+02 0.0027 29.3 4.4 49 84-135 67-117 (416)
420 PRK14484 phosphotransferase ma 22.6 2.5E+02 0.0053 22.7 5.4 63 89-165 2-64 (124)
421 PRK09989 hypothetical protein; 22.5 4.7E+02 0.01 22.7 7.8 57 7-67 4-61 (258)
422 PRK08195 4-hyroxy-2-oxovalerat 22.5 6.4E+02 0.014 23.5 16.5 186 11-233 18-224 (337)
423 KOG1552 Predicted alpha/beta h 22.4 2.5E+02 0.0055 25.6 6.0 96 120-234 59-160 (258)
424 TIGR03239 GarL 2-dehydro-3-deo 22.4 63 0.0014 29.0 2.2 50 78-131 23-72 (249)
425 COG4843 Uncharacterized protei 22.3 87 0.0019 26.2 2.8 15 158-172 151-165 (179)
426 PRK13803 bifunctional phosphor 22.3 93 0.002 31.6 3.6 46 171-232 142-189 (610)
427 PRK11197 lldD L-lactate dehydr 22.2 4.4E+02 0.0095 25.4 7.9 115 102-234 129-274 (381)
428 TIGR02311 HpaI 2,4-dihydroxyhe 22.1 63 0.0014 28.9 2.1 124 79-235 24-172 (249)
429 KOG2683 Sirtuin 4 and related 22.0 96 0.0021 28.3 3.2 50 197-247 217-269 (305)
430 COG1217 TypA Predicted membran 21.9 1.1E+02 0.0024 30.7 3.8 74 73-156 79-152 (603)
431 cd00945 Aldolase_Class_I Class 21.8 4.3E+02 0.0094 21.3 16.3 180 16-233 11-201 (201)
432 cd00841 MPP_YfcE Escherichia c 21.7 76 0.0017 25.2 2.4 37 81-132 95-131 (155)
433 COG3454 Metal-dependent hydrol 21.6 98 0.0021 29.5 3.3 55 38-94 245-299 (377)
434 TIGR03821 AblA_like_1 lysine-2 21.5 6.5E+02 0.014 23.3 9.0 111 74-195 190-302 (321)
435 PRK05458 guanosine 5'-monophos 21.5 4.3E+02 0.0094 24.8 7.6 116 81-235 102-232 (326)
436 PLN02746 hydroxymethylglutaryl 21.4 7E+02 0.015 23.6 10.1 158 11-192 61-238 (347)
437 PRK14333 (dimethylallyl)adenos 21.3 3.7E+02 0.008 26.0 7.4 60 183-247 60-120 (448)
438 PRK08649 inosine 5-monophospha 21.2 1.3E+02 0.0027 28.8 4.0 31 204-235 187-217 (368)
439 TIGR00253 RNA_bind_YhbY putati 21.2 1.4E+02 0.0029 23.1 3.5 81 112-212 6-86 (95)
440 COG1576 Uncharacterized conser 21.2 4.8E+02 0.01 22.0 7.0 61 141-216 50-110 (155)
441 PRK02261 methylaspartate mutas 21.2 2E+02 0.0044 23.2 4.8 46 204-249 31-79 (137)
442 PRK10878 hypothetical protein; 21.1 87 0.0019 22.9 2.3 25 168-193 40-64 (72)
443 TIGR02090 LEU1_arch isopropylm 21.1 7E+02 0.015 23.4 9.6 105 81-191 28-152 (363)
444 PRK10558 alpha-dehydro-beta-de 21.0 66 0.0014 28.9 2.0 50 79-132 31-80 (256)
445 PLN02460 indole-3-glycerol-pho 21.0 1.2E+02 0.0025 28.8 3.7 39 204-242 288-327 (338)
446 PF02044 Bombesin: Bombesin-li 21.0 18 0.00038 18.3 -0.9 7 167-173 2-8 (14)
447 KOG3111 D-ribulose-5-phosphate 21.0 6E+02 0.013 22.6 11.6 132 81-247 80-215 (224)
448 COG3976 Uncharacterized protei 20.9 96 0.0021 25.4 2.7 54 91-153 78-131 (135)
449 cd02069 methionine_synthase_B1 20.8 1.6E+02 0.0036 25.6 4.4 47 175-230 149-198 (213)
450 TIGR00542 hxl6Piso_put hexulos 20.7 5.8E+02 0.013 22.4 11.6 68 61-130 4-75 (279)
451 PRK08444 hypothetical protein; 20.7 7.2E+02 0.016 23.4 9.3 201 16-232 81-308 (353)
452 cd00950 DHDPS Dihydrodipicolin 20.6 6E+02 0.013 22.5 9.0 25 108-132 21-45 (284)
453 cd04740 DHOD_1B_like Dihydroor 20.6 3.8E+02 0.0082 24.0 6.9 27 170-196 258-284 (296)
454 TIGR02630 xylose_isom_A xylose 20.5 5.9E+02 0.013 25.1 8.4 81 128-212 105-188 (434)
455 COG1927 Mtd Coenzyme F420-depe 20.5 2.3E+02 0.005 25.5 5.2 58 170-236 36-97 (277)
456 PF04414 tRNA_deacylase: D-ami 20.5 1.1E+02 0.0024 27.1 3.2 43 89-131 92-139 (213)
457 cd07381 MPP_CapA CapA and rela 20.4 4.3E+02 0.0093 22.8 7.0 51 77-133 66-118 (239)
458 COG0041 PurE Phosphoribosylcar 20.3 2.5E+02 0.0055 23.8 5.2 43 80-127 21-63 (162)
459 TIGR03217 4OH_2_O_val_ald 4-hy 20.3 7.1E+02 0.015 23.2 16.7 186 11-233 17-223 (333)
460 PLN02433 uroporphyrinogen deca 20.2 4.4E+02 0.0095 24.4 7.4 88 81-192 246-337 (345)
No 1
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-94 Score=615.98 Aligned_cols=246 Identities=67% Similarity=1.097 Sum_probs=238.8
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCcccccccc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
|.|+.+++||||||++.++..++++.|+....+ .++|++|+||++||..+++.++..+.++||||+....||||||+|
T Consensus 1 MarkffvgGNwKmngs~~s~~eii~~ln~a~~~--~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS 78 (247)
T KOG1643|consen 1 MARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLP--ANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEIS 78 (247)
T ss_pred CCcceEecccccccCcHHHHHHHHHHhhhccCC--CCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccC
Confidence 789999999999999999999999999886543 569999999999999999999889999999999999999999999
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
++||+|+|++|||+||||||++|+|+|+.|++|++.||+.||++|+||||++++||+|+|.+|+.+||.++.+.+.+|++
T Consensus 79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n 158 (247)
T KOG1643|consen 79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN 158 (247)
T ss_pred HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCchH
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~ 240 (251)
++||||||||||||++|||+|+||+|..||.|+.++.+..++..+||+||||||..|+++|+.++||||||||||||||+
T Consensus 159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~diDGFLVGGaSLKpe 238 (247)
T KOG1643|consen 159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLKPE 238 (247)
T ss_pred eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccHHHhcccccccceEEcCcccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 025540 241 FIDIIKSA 248 (251)
Q Consensus 241 F~~Ii~~~ 248 (251)
|.+|++..
T Consensus 239 F~~Iin~~ 246 (247)
T KOG1643|consen 239 FVDIINAR 246 (247)
T ss_pred HHHhhhcc
Confidence 99999864
No 2
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=3.1e-93 Score=636.52 Aligned_cols=248 Identities=89% Similarity=1.338 Sum_probs=234.4
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCcccccccc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
|.|||||+||||||++..++.+|++.+.....+...++++++||||++|..+.+.++.++.+|||||++.++||||||||
T Consensus 1 ~~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS 80 (253)
T PLN02561 1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEIS 80 (253)
T ss_pred CCCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCC
Confidence 78999999999999999999999999865323333569999999999999998877656999999999999999999999
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
++||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+|++.+++.++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~ 160 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN 160 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876689
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCchH
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~ 240 (251)
++|||||+||||||++|||++++++|++||+.+.++|+..+++++||||||||||+|+.+++.++|+||+|||||||+++
T Consensus 161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~~~ 240 (253)
T PLN02561 161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKPE 240 (253)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999977
Q ss_pred HHHHHHHH
Q 025540 241 FIDIIKSA 248 (251)
Q Consensus 241 F~~Ii~~~ 248 (251)
|.+|++.+
T Consensus 241 F~~ii~~~ 248 (253)
T PLN02561 241 FIDIIKSA 248 (253)
T ss_pred HHHHHHhh
Confidence 99999865
No 3
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=7.9e-93 Score=633.29 Aligned_cols=245 Identities=39% Similarity=0.619 Sum_probs=230.3
Q ss_pred ceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHH
Q 025540 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM 83 (251)
Q Consensus 4 ~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~m 83 (251)
+|||+||||||++..++.+|++.+.... ....++++++||||++|..+.+.+.+++.+|||||++.+.||||||||++|
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~-~~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~m 80 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQ-YDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARM 80 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhc-cCCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHH
Confidence 7899999999999999999999886632 223568999999999999998876667999999999999999999999999
Q ss_pred HHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 025540 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI 161 (251)
Q Consensus 84 Lkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~--~~~~~ 161 (251)
|||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+.+|++++ .++++
T Consensus 81 Lkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~i 160 (253)
T PRK14567 81 LEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKV 160 (253)
T ss_pred HHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 37899
Q ss_pred EEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH
Q 025540 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE 240 (251)
Q Consensus 162 iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~ 240 (251)
+|||||+||||||++||||+|+++|++||+++.+ ++..+++++||||||||+++|+.+++.++||||+|||||||| ++
T Consensus 161 vIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~~~~ 239 (253)
T PRK14567 161 VIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAE 239 (253)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhcHHH
Confidence 9999999999999999999999999999999988 677788899999999999999999999999999999999999 79
Q ss_pred HHHHHHHHhc
Q 025540 241 FIDIIKSAEL 250 (251)
Q Consensus 241 F~~Ii~~~~~ 250 (251)
|.+|++.+++
T Consensus 240 F~~Ii~~~~~ 249 (253)
T PRK14567 240 FNEIINQANK 249 (253)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 4
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.7e-92 Score=633.03 Aligned_cols=246 Identities=43% Similarity=0.665 Sum_probs=229.5
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CC-------ceEeeecccccCC
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG-------FHVAAQNCWVKKG 72 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~-------i~vgAQn~~~~~~ 72 (251)
-.|||||+||||||++..++.+|++.+..... . +++++++||||++|..+.+.+. ++ +.+|||||++.++
T Consensus 2 ~~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~-~-~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~ 79 (260)
T PRK14566 2 ALRRPMVAGNWKMNGSAALAQELFKKFAGKLQ-N-DSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDF 79 (260)
T ss_pred CCCCeEEEEECCcCcCHHHHHHHHHHHHhhcC-C-CCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccC
Confidence 04789999999999999999999998866322 2 5699999999999999988765 44 9999999999999
Q ss_pred ccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 73 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 73 Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
||||||||++||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+|
T Consensus 80 Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l 159 (260)
T PRK14566 80 GAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVI 159 (260)
T ss_pred CCccCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC--CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEE
Q 025540 153 DRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGF 230 (251)
Q Consensus 153 ~~i~--~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~ 230 (251)
+++. ++++++|||||+||||||++|||++++++|.+||+++.+. +...++++||||||||||+|+.+|+.++||||+
T Consensus 160 ~~~~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~ 238 (260)
T PRK14566 160 EKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGGSVTPSNAADLFAQPDVDGG 238 (260)
T ss_pred hccchhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecCCCCHhHHHHHhcCCCCCeE
Confidence 8543 4789999999999999999999999999999999999988 778888999999999999999999999999999
Q ss_pred EEcCccCc-hHHHHHHHHHh
Q 025540 231 LVGGASLK-PEFIDIIKSAE 249 (251)
Q Consensus 231 LVG~asl~-~~F~~Ii~~~~ 249 (251)
|||||||+ ++|.+|++.+.
T Consensus 239 LVGgASL~~~~F~~Ii~~~~ 258 (260)
T PRK14566 239 LIGGASLNSTEFLSLCTIAM 258 (260)
T ss_pred EechHhcCHHHHHHHHHHhh
Confidence 99999999 79999998754
No 5
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=5.1e-92 Score=631.39 Aligned_cols=249 Identities=31% Similarity=0.493 Sum_probs=231.6
Q ss_pred CCceEEEEecccCCCHHHHHHHHHHhhccC--CCCCCceeEEEcCccccHHHHHhhcC-----CCceEeeecccccCCcc
Q 025540 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQ--VPSSDVVEVVVSPPFVFLGLVKSSLR-----PGFHVAAQNCWVKKGGA 74 (251)
Q Consensus 2 ~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~--~~~~~~~~v~i~Pp~~~L~~~~~~~~-----~~i~vgAQn~~~~~~Ga 74 (251)
||||||+||||||++..++.+|++.+.... .+...++++++||||++|..+.+.+. +++.+|||||++.++||
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 399999999999999999999999986531 12235689999999999999988762 57999999999999999
Q ss_pred ccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 025540 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR 154 (251)
Q Consensus 75 ~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~ 154 (251)
|||||||+||||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|++.+++.+||+.+|+.
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~ 160 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHG 160 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC--CCCCeEEEEcccCccCC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEE
Q 025540 155 VS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 231 (251)
Q Consensus 155 i~--~~~~~iIAYEPvWAIGt-G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~L 231 (251)
++ .+++++|||||+||||| |++||||+++++|++||+.+.+.++.. ++++||||||||||+|+.+|+.++||||+|
T Consensus 161 ~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGGSV~~~N~~~l~~~~diDG~L 239 (260)
T PRK15492 161 INPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGGSVNAENANELFGQPHIDGLF 239 (260)
T ss_pred CCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcCccCHHHHHHHhcCCCCCEEE
Confidence 86 37899999999999998 999999999999999999999999866 789999999999999999999999999999
Q ss_pred EcCccCc-hHHHHHHHHHhcC
Q 025540 232 VGGASLK-PEFIDIIKSAELK 251 (251)
Q Consensus 232 VG~asl~-~~F~~Ii~~~~~~ 251 (251)
||||||+ ++|.+|++...+|
T Consensus 240 vG~aSl~~~~F~~Ii~~~~~~ 260 (260)
T PRK15492 240 IGRSAWDADKFFAIIEGILNK 260 (260)
T ss_pred eehhhcCHHHHHHHHHHHhcC
Confidence 9999999 8999999876553
No 6
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=6.3e-92 Score=629.50 Aligned_cols=249 Identities=61% Similarity=0.992 Sum_probs=235.0
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI 79 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGei 79 (251)
|||+|||++|||||++.+++.+|++.+..... ...++++++||||++|..+.+.+. +++.+|||||++.+.|||||||
T Consensus 2 ~~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~-~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGev 80 (255)
T PTZ00333 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKF-DPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEI 80 (255)
T ss_pred CCCCeEEEEEcccccCHHHHHHHHHHHHhhcc-ccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcC
Confidence 46888999999999999999999998876432 225689999999999999998877 7899999999999999999999
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC--
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS-- 157 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~-- 157 (251)
|++||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+|++.+|+.++.
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~ 160 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEA 160 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 158 ~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.++++|||||+||||||++|+||+|+++|++||+.+.++|+..+++++||||||||+++|+.+++.+++|||+|||||||
T Consensus 161 ~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl 240 (255)
T PTZ00333 161 WDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASL 240 (255)
T ss_pred cceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhh
Confidence 68999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhc
Q 025540 238 KPEFIDIIKSAEL 250 (251)
Q Consensus 238 ~~~F~~Ii~~~~~ 250 (251)
+++|.+|++.+.+
T Consensus 241 ~~~f~~Ii~~~~~ 253 (255)
T PTZ00333 241 KPDFVDIIKSAEQ 253 (255)
T ss_pred hhhHHHHHHHHhh
Confidence 9889999997654
No 7
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=3e-92 Score=628.49 Aligned_cols=240 Identities=50% Similarity=0.793 Sum_probs=223.6
Q ss_pred eEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHH
Q 025540 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM 83 (251)
Q Consensus 5 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~m 83 (251)
|||++|||||++.+++.+|++.+.+...+ ..+++++|||||++|..+++.++ +++.+||||||+.+.||||||||++|
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~-~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~m 79 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLP-NKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEM 79 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCH-TTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccc-cCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHH
Confidence 69999999999999999999997653322 25899999999999999999887 88999999999999999999999999
Q ss_pred HHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 025540 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI 161 (251)
Q Consensus 84 Lkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~--~~~~~ 161 (251)
|+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+.+|++++ +++++
T Consensus 80 L~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~ 159 (244)
T PF00121_consen 80 LKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNI 159 (244)
T ss_dssp HHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCE
T ss_pred HHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 36899
Q ss_pred EEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH
Q 025540 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE 240 (251)
Q Consensus 162 iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~ 240 (251)
+|||||+||||||++|||++++++|++||++++++|+.+.++++|||||||||++|+.+++.++||||+|||||||+ ++
T Consensus 160 iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~ 239 (244)
T PF00121_consen 160 IIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAES 239 (244)
T ss_dssp EEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHH
T ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccc
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999 88
Q ss_pred HHHHH
Q 025540 241 FIDII 245 (251)
Q Consensus 241 F~~Ii 245 (251)
|.+||
T Consensus 240 F~~Ii 244 (244)
T PF00121_consen 240 FLEII 244 (244)
T ss_dssp HHHHH
T ss_pred hhhcC
Confidence 99997
No 8
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=9.9e-92 Score=626.81 Aligned_cols=245 Identities=54% Similarity=0.803 Sum_probs=231.7
Q ss_pred CceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccH
Q 025540 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA 81 (251)
Q Consensus 3 r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~ 81 (251)
|||||++|||||++..++.+|++.+.... +...++++++||||++|..+++.+. +++.+||||||+.++||||||||+
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~-~~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~ 79 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAAL-PDADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISA 79 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhc-cccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCH
Confidence 57899999999999999999999886632 2234699999999999999998877 689999999999999999999999
Q ss_pred HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 025540 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS 159 (251)
Q Consensus 82 ~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~--~~~ 159 (251)
+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.++|.+||+.+|++++ .++
T Consensus 80 ~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~ 159 (250)
T PRK00042 80 EMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFA 159 (250)
T ss_pred HHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 378
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK- 238 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~- 238 (251)
+++|||||+||||||++|||++++++|++||+++.++|+ .+++++|||||||||++|+.+++.++||||+|||||||+
T Consensus 160 ~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~ 238 (250)
T PRK00042 160 NLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKA 238 (250)
T ss_pred CEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeech
Confidence 999999999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 025540 239 PEFIDIIKSAE 249 (251)
Q Consensus 239 ~~F~~Ii~~~~ 249 (251)
++|.+|++.+.
T Consensus 239 ~~f~~ii~~~~ 249 (250)
T PRK00042 239 EDFLAIVKAAA 249 (250)
T ss_pred HHHHHHHHHhh
Confidence 89999998754
No 9
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-91 Score=621.60 Aligned_cols=247 Identities=50% Similarity=0.729 Sum_probs=231.8
Q ss_pred CCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCcccccccc
Q 025540 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 2 ~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
||++||++|||||++..++..|++.+.....+...+++++|||||++|..+.+.+. .++.+||||||+.++||||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 48889999999999999999999998765433223344999999999999999887 38899999999999999999999
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
++||+|+||+||||||||||.+|+|||++|++|+++|+++||+||+||||++++||+|+|.++|.+|++..+..++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~ 160 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN 160 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875588
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++|||||+||||||++||+++++++|++||.++.++++.+ +.+|||||||||++|+.+++.++||||+|||||||| +
T Consensus 161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence 9999999999999999999999999999999999999876 899999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHhc
Q 025540 240 EFIDIIKSAEL 250 (251)
Q Consensus 240 ~F~~Ii~~~~~ 250 (251)
+|.+|++.+..
T Consensus 239 ~f~~ii~~~~~ 249 (251)
T COG0149 239 DFLAILEALAK 249 (251)
T ss_pred hHHHHHHHHhh
Confidence 99999998753
No 10
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=7.6e-91 Score=635.14 Aligned_cols=247 Identities=64% Similarity=1.036 Sum_probs=234.1
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCcccccccc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
|.|||||+||||||++.+++.+|++.+.....+ .+++++|||||++|..+.+.+.+++.+|||||++.+.||||||||
T Consensus 62 ~~~k~~i~gNWKmn~t~~~~~~~~~~l~~~~~~--~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVS 139 (315)
T PLN02429 62 GSGKFFVGGNWKCNGTKDSIAKLISDLNSATLE--ADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEIS 139 (315)
T ss_pred ccCCEEEEEECCcCCCHHHHHHHHHHHHhcccC--CCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCC
Confidence 347899999999999999999999998663222 369999999999999998877667999999999999999999999
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
++||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+.+++.++++++
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887889
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++|||||+||||||++|||++++++|++||+++.+.++.++++++|||||||||++|+.+++.++||||+|||||||+ +
T Consensus 220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~ 299 (315)
T PLN02429 220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 299 (315)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHH
Confidence 999999999999999999999999999999999999988889999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHh
Q 025540 240 EFIDIIKSAE 249 (251)
Q Consensus 240 ~F~~Ii~~~~ 249 (251)
+|.+|++...
T Consensus 300 ~F~~Ii~~~~ 309 (315)
T PLN02429 300 EFATIVNSVT 309 (315)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 11
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=1.1e-90 Score=617.70 Aligned_cols=240 Identities=54% Similarity=0.781 Sum_probs=228.0
Q ss_pred eEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHH
Q 025540 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM 83 (251)
Q Consensus 5 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~m 83 (251)
|||++|||||++.+++.+|++.+.... ....+++++|||||++|..+.+.++ +++.+||||||+.+.||||||||++|
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~-~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~m 79 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVL-KDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEM 79 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhc-cccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHH
Confidence 589999999999999999999887642 2235799999999999999998876 68999999999999999999999999
Q ss_pred HHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 025540 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL 163 (251)
Q Consensus 84 Lkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iI 163 (251)
|+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+|++..|+.++.+++++|
T Consensus 80 L~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iI 159 (242)
T cd00311 80 LKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVI 159 (242)
T ss_pred HHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866889999
Q ss_pred EEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 164 AYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
||||+||||||++|||++++++|++||+++.+.++. .++++|||||||||++|+.+++.++||||+|||||||| ++|.
T Consensus 160 AYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~ 238 (242)
T cd00311 160 AYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFL 238 (242)
T ss_pred EECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHHHHH
Confidence 999999999999999999999999999999999987 88999999999999999999999999999999999999 8999
Q ss_pred HHHH
Q 025540 243 DIIK 246 (251)
Q Consensus 243 ~Ii~ 246 (251)
+|++
T Consensus 239 ~Ii~ 242 (242)
T cd00311 239 DIIK 242 (242)
T ss_pred HHhC
Confidence 9974
No 12
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=8.4e-88 Score=626.95 Aligned_cols=248 Identities=35% Similarity=0.517 Sum_probs=230.5
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccC--CCCCCceeEEEcCccccHHHHHhhcC-----CCceEeeecccccCCc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQ--VPSSDVVEVVVSPPFVFLGLVKSSLR-----PGFHVAAQNCWVKKGG 73 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~--~~~~~~~~v~i~Pp~~~L~~~~~~~~-----~~i~vgAQn~~~~~~G 73 (251)
|.|+|||+||||||++.+++..|++.|.... .+...++++++||||++|..+.+.+. +++.+||||||+.++|
T Consensus 1 ~~r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~G 80 (355)
T PRK14905 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKG 80 (355)
T ss_pred CCCceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCC
Confidence 6688999999999999999999999986532 12224689999999999999987663 4799999999999999
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
||||||||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+.+|+
T Consensus 81 a~TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~ 160 (355)
T PRK14905 81 QFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLH 160 (355)
T ss_pred CccCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CCCCeEEEEcccCccCC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEE
Q 025540 154 RVS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGF 230 (251)
Q Consensus 154 ~i~--~~~~~iIAYEPvWAIGt-G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~ 230 (251)
+++ .+++++|||||+||||| |++|||++++++|++||+++.+.++.. ++++|||||||||++|+.+++.+++|||+
T Consensus 161 ~v~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGGSV~~~N~~~l~~~~~iDG~ 239 (355)
T PRK14905 161 GVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGGSVNLENANELIMKPHIDGL 239 (355)
T ss_pred cCCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeCcCCHHHHHHHhcCCCCCEE
Confidence 886 47899999999999998 899999999999999999999999766 78899999999999999999999999999
Q ss_pred EEcCccCc-hHHHHHHHHHh
Q 025540 231 LVGGASLK-PEFIDIIKSAE 249 (251)
Q Consensus 231 LVG~asl~-~~F~~Ii~~~~ 249 (251)
|||||||| ++|.+|++.+.
T Consensus 240 LVG~asl~~~~f~~Ii~~~~ 259 (355)
T PRK14905 240 FIGRSAWDAQCFHALIADAL 259 (355)
T ss_pred EechhhccHHHHHHHHHHHH
Confidence 99999999 89999998753
No 13
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.4e-87 Score=594.73 Aligned_cols=233 Identities=37% Similarity=0.608 Sum_probs=216.8
Q ss_pred ceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHH
Q 025540 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM 83 (251)
Q Consensus 4 ~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~m 83 (251)
||||+||||||++..++.+|++++.........++++++||||++|..+.+.. +++.+|||||++.++||||||||++|
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~-~~i~vgAQnv~~~~~Ga~TGevS~~m 80 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN-PNIKLGAQNCFYGSSGGYTGEISAKM 80 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhc-CCceEEecccccccCCCccCccCHHH
Confidence 78999999999999999999999876322112569999999999999998754 67999999999999999999999999
Q ss_pred HHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 025540 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL 163 (251)
Q Consensus 84 Lkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iI 163 (251)
|||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+.|++.+++.+||+..+.. +++++|
T Consensus 81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ivI 157 (237)
T PRK14565 81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGEFII 157 (237)
T ss_pred HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 468999
Q ss_pred EEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 164 AYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
||||+||||||++|+||+|+++|++||++. .++||||||||+++|+.+++.++++||+|||||||| ++|.
T Consensus 158 AYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~---------~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~ 228 (237)
T PRK14565 158 AYEPVWAIGGSTIPSNDAIAEAFEIIRSYD---------SKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFC 228 (237)
T ss_pred EECCHHHhCCCCCCCHHHHHHHHHHHHHhC---------CCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHH
Confidence 999999999999999999999999999862 468999999999999999999999999999999999 8999
Q ss_pred HHHHHHh
Q 025540 243 DIIKSAE 249 (251)
Q Consensus 243 ~Ii~~~~ 249 (251)
+|++.+.
T Consensus 229 ~ii~~~~ 235 (237)
T PRK14565 229 KIIQQVE 235 (237)
T ss_pred HHHHHHh
Confidence 9998753
No 14
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=9.3e-87 Score=656.49 Aligned_cols=245 Identities=50% Similarity=0.733 Sum_probs=231.8
Q ss_pred CCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCcccccccc
Q 025540 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 2 ~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
||+|||++|||||++.+++.+|++.+.... +. .+++++|||||++|..+.+.+. +++.+||||||+.++||||||||
T Consensus 396 Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~-~~-~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVS 473 (645)
T PRK13962 396 PRKPIIAGNWKMNKTPAEAKEFVNELKKYV-KD-AQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEIS 473 (645)
T ss_pred CCCcEEEEECCcCcCHHHHHHHHHHHHhhc-cC-CCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCC
Confidence 488999999999999999999999886632 22 3469999999999999998877 68999999999999999999999
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW 158 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~--~~ 158 (251)
++||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+|||||+++|++|+|.+++.+||+.+|++++ .+
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 37
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++++||||||||||||++|||+++|++|++||+++++.|+...++++||||||||||+|+.+|+.++||||+|||||||+
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~ 633 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLK 633 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhcC
Confidence 89999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred -hHHHHHHHHH
Q 025540 239 -PEFIDIIKSA 248 (251)
Q Consensus 239 -~~F~~Ii~~~ 248 (251)
++|.+|++.+
T Consensus 634 ~~~F~~Ii~~~ 644 (645)
T PRK13962 634 AQEFAAIANYF 644 (645)
T ss_pred HHHHHHHHHhh
Confidence 7999999854
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=5.6e-77 Score=517.67 Aligned_cols=203 Identities=35% Similarity=0.471 Sum_probs=183.5
Q ss_pred EEEEecc-cCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHHH
Q 025540 6 FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEML 84 (251)
Q Consensus 6 ~i~~NwK-mn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL 84 (251)
||++||| ||++..+...|++.+.... ++..++++++||||++|..+++.+ .+.+|||||++.++||||||||++||
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~-~~~~~~~v~v~Pp~~~L~~~~~~~--~i~vgAQn~~~~~~Ga~TGevS~~mL 77 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEV-ASEAGVAVAVAPPFVDLPMIKREV--EIPVYAQHVDAVLSGAHTGEISAEML 77 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhc-cccCCcEEEEECCHHHHHHHHHhc--CceEEecccccccCCCccCcCCHHHH
Confidence 5899999 9999999999998886632 233578999999999999998876 39999999999999999999999999
Q ss_pred HhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 025540 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (251)
Q Consensus 85 kd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIA 164 (251)
||+||+|||||||||| |+||| |++|+++|+++||+||+|| +++.+|+.... +++++||
T Consensus 78 kd~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~~-----~~~~vIA 135 (205)
T TIGR00419 78 KDIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAAA-----LEPDVVA 135 (205)
T ss_pred HHcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhhh-----hcCeEEE
Confidence 9999999999999999 99999 9999999999999999999 34555665332 5799999
Q ss_pred EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCch
Q 025540 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 239 (251)
Q Consensus 165 YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~ 239 (251)
|||+||||||++|||++++++|++|| ++.+.++++|||||||||++|+.+++.++|+||+||||||||+
T Consensus 136 YEPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 136 VEPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred ECCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 99999999999999999999999999 3445678899999999999999999999999999999999983
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.4e-53 Score=371.40 Aligned_cols=213 Identities=22% Similarity=0.264 Sum_probs=187.8
Q ss_pred CCceEEEEecccCC--CHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccc
Q 025540 2 GRKFFVGGNWKCNG--TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI 79 (251)
Q Consensus 2 ~r~~~i~~NwKmn~--~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGei 79 (251)
||+|||++|||||+ +..++.+|++.+... ++..++++++|||+++|..+.+.+ ++.++|||+++.++|+||||+
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~l~~v~~~~--~i~v~aq~~~~~~~G~~tg~~ 76 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKV--SKETGVRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHI 76 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhc--cccCCCEEEEECCHHHHHHHHHhc--CCeEEeccCCCCCCCCchhhh
Confidence 38899999999999 689999999888662 233568999999999999988765 689999999999999999999
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
|++||+++|+++||+||||||..|+| +++|+.+|.++||.||+|+||.. |++.+.+ ..
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~~----~~ 134 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAAA----LG 134 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHhc----CC
Confidence 99999999999999999999999888 56899999999999999999842 3333322 45
Q ss_pred CeEEEEcccCccCCCCC---CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 160 NIVLAYEPVWAIGTGKV---ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~---a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
+.+|+|||+|+||||+. ++|++++++++.||+. ..++||+|||||++.|..+.+.+.++||+|||+|+
T Consensus 135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~---------~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~ 205 (223)
T PRK04302 135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV---------NPDVKVLCGAGISTGEDVKAALELGADGVLLASGV 205 (223)
T ss_pred CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc---------cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHH
Confidence 67999999999999977 7899999999999975 24589999999999999999999999999999999
Q ss_pred Cc-hHHHHHHHHHh
Q 025540 237 LK-PEFIDIIKSAE 249 (251)
Q Consensus 237 l~-~~F~~Ii~~~~ 249 (251)
++ ++|..+++.+.
T Consensus 206 l~~~~~~~~~~~~~ 219 (223)
T PRK04302 206 VKAKDPEAALRDLV 219 (223)
T ss_pred hCCcCHHHHHHHHH
Confidence 99 89999998754
No 17
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.47 E-value=9e-07 Score=79.95 Aligned_cols=122 Identities=26% Similarity=0.258 Sum_probs=88.6
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl-CiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~ 157 (251)
=-.++++++|++.+||- +.-+ +....=+.++.++||.+|+ |.-.+.++| ++.+.+
T Consensus 108 ~f~~~~~~aGvdGviip----DLp~----ee~~~~~~~~~~~gl~~I~lvap~t~~er------------i~~i~~---- 163 (258)
T PRK13111 108 RFAADAAEAGVDGLIIP----DLPP----EEAEELRAAAKKHGLDLIFLVAPTTTDER------------LKKIAS---- 163 (258)
T ss_pred HHHHHHHHcCCcEEEEC----CCCH----HHHHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHH----
Confidence 34899999999999995 3333 3444677788999999998 888776655 222222
Q ss_pred CCCeEEEEcccCccC-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHHHHhcCCCCCEEEEcC
Q 025540 158 WSNIVLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 158 ~~~~iIAYEPvWAIG-tG~~-a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~ 234 (251)
.++-.|.| +-.+| ||.. ..++.+.+.++.+|+. .++||+.|++| +++++.+++. ..||+.||+
T Consensus 164 ~s~gfIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGS 229 (258)
T PRK13111 164 HASGFVYY--VSRAGVTGARSADAADLAELVARLKAH----------TDLPVAVGFGISTPEQAAAIAA--VADGVIVGS 229 (258)
T ss_pred hCCCcEEE--EeCCCCCCcccCCCccHHHHHHHHHhc----------CCCcEEEEcccCCHHHHHHHHH--hCCEEEEcH
Confidence 23445556 44577 7764 3577788888888874 25899999999 6688888875 499999999
Q ss_pred ccCc
Q 025540 235 ASLK 238 (251)
Q Consensus 235 asl~ 238 (251)
+-.+
T Consensus 230 aiv~ 233 (258)
T PRK13111 230 ALVK 233 (258)
T ss_pred HHHH
Confidence 8543
No 18
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.44 E-value=1.6e-06 Score=80.39 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=109.9
Q ss_pred cccCCccccccc---cHHHHHhC-CCCEEEe-CchhhccccccChHHHHHHHHHHHHC---CCeE-EEEeCCcHHHHhcC
Q 025540 68 WVKKGGAFTGEI---SAEMLVNL-EIPWVIL-GHSERRLILNELNEFVGDKVAYALSQ---GLKV-IACVGETLEQREAG 138 (251)
Q Consensus 68 ~~~~~Ga~TGei---S~~mLkd~-G~~~vii-GHSERR~~f~Etd~~i~~Kv~~al~~---gl~p-IlCiGE~~~~r~~g 138 (251)
=++..|+||-+= .++|-+|+ |.+|+=+ =|.|+|..+.+.. ..+++|.+. |+.+ ++|.......|
T Consensus 140 lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~----~~v~aa~~L~~~Gf~v~~yc~~d~~~a~--- 212 (326)
T PRK11840 140 LPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMV----ETLKATEILVKEGFQVMVYCSDDPIAAK--- 212 (326)
T ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHH----HHHHHHHHHHHCCCEEEEEeCCCHHHHH---
Confidence 367889999873 67888887 4577633 3678999888877 455556555 9999 99999876544
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcc-cCccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc
Q 025540 139 STMDVVAAQTKAIADRVSSWSNIVLAYEP-VWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA 216 (251)
Q Consensus 139 ~~~~~~~~Ql~~~l~~i~~~~~~iIAYEP-vWAIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~ 216 (251)
. +..+ .. +|+|| .-.||||+.. +|+.++.+.+. .++||+.|+++...
T Consensus 213 -----------~-l~~~---g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------~~vpVivdAGIg~~ 261 (326)
T PRK11840 213 -----------R-LEDA---GA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------ATVPVLVDAGVGTA 261 (326)
T ss_pred -----------H-HHhc---CC--EEEeeccccccCCCCCCCHHHHHHHHHc--------------CCCcEEEeCCCCCH
Confidence 2 3322 23 89999 9999999997 57776654443 24999999999999
Q ss_pred cHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 217 NCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 217 n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
..+..+-+.+.||+|+.++-.+ ++...+.+++
T Consensus 262 sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~ 294 (326)
T PRK11840 262 SDAAVAMELGCDGVLMNTAIAEAKNPVLMARAM 294 (326)
T ss_pred HHHHHHHHcCCCEEEEcceeccCCCHHHHHHHH
Confidence 9999999999999999999988 6666666554
No 19
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.14 E-value=0.00021 Score=62.34 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCce-EeeecccccC--CccccccccHHHHHhCCCCEEEe
Q 025540 18 EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFH-VAAQNCWVKK--GGAFTGEISAEMLVNLEIPWVIL 94 (251)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~-vgAQn~~~~~--~Ga~TGeiS~~mLkd~G~~~vii 94 (251)
....++++...+ .++..+-..++..+..+++...-++. +-.|+....+ -|+|+. -.+++++.|++++++
T Consensus 27 ~~i~~~a~~~~~------~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~--~~~~a~~aGad~I~~ 98 (219)
T cd04729 27 EIMAAMALAAVQ------GGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIE--EVDALAAAGADIIAL 98 (219)
T ss_pred HHHHHHHHHHHH------CCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHH--HHHHHHHcCCCEEEE
Confidence 344555554433 23444445777777877664322332 3356653212 255554 348999999999999
Q ss_pred CchhhccccccChHHHHHHHHHHHHCC-CeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCC
Q 025540 95 GHSERRLILNELNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGT 173 (251)
Q Consensus 95 GHSERR~~f~Etd~~i~~Kv~~al~~g-l~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGt 173 (251)
.+++++.-.+|. +..-++++.+++ +..++++- +.++. ....+ ..-.+|..++. |.
T Consensus 99 ~~~~~~~p~~~~---~~~~i~~~~~~g~~~iiv~v~-t~~ea-------------~~a~~----~G~d~i~~~~~---g~ 154 (219)
T cd04729 99 DATDRPRPDGET---LAELIKRIHEEYNCLLMADIS-TLEEA-------------LNAAK----LGFDIIGTTLS---GY 154 (219)
T ss_pred eCCCCCCCCCcC---HHHHHHHHHHHhCCeEEEECC-CHHHH-------------HHHHH----cCCCEEEccCc---cc
Confidence 999987432233 334555666666 76666554 32222 11111 12223333332 21
Q ss_pred -CCC--CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 174 -GKV--ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 174 -G~~--a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
+.. ..... -+..+.+|+.+ ++||+.+|+| +++|+.+++. .+.||++||++-.+ +++.
T Consensus 155 t~~~~~~~~~~-~~~l~~i~~~~----------~ipvia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 155 TEETAKTEDPD-FELLKELRKAL----------GIPVIAEGRINSPEQAAKALE-LGADAVVVGSAITRPEHIT 216 (219)
T ss_pred cccccCCCCCC-HHHHHHHHHhc----------CCCEEEeCCCCCHHHHHHHHH-CCCCEEEEchHHhChHhHh
Confidence 111 11111 12334444431 4899999999 5788888877 57999999999776 5554
No 20
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.11 E-value=6.7e-05 Score=66.92 Aligned_cols=183 Identities=15% Similarity=0.188 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccH-----HH------------HHhhcC--CCceEeeecc-cccCCc
Q 025540 14 NGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFL-----GL------------VKSSLR--PGFHVAAQNC-WVKKGG 73 (251)
Q Consensus 14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L-----~~------------~~~~~~--~~i~vgAQn~-~~~~~G 73 (251)
+.+.++..++++.+.+. . +-+|+.+-+|.+.- .. +.+.++ .++.+ .+ .+...
T Consensus 14 ~p~~~~~~~~~~~l~~~-a---d~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl---~lM~y~n~- 85 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-V---DILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPI---ILMTYLED- 85 (244)
T ss_pred CCCHHHHHHHHHHHHhh-C---CEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCE---EEEEecch-
Confidence 56788888888877653 2 45788775555421 11 111111 12222 11 11111
Q ss_pred ccccccc-HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 74 AFTGEIS-AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 74 a~TGeiS-~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
-.+|.-. .+.+++.|++++++ |. ..-|+.+...+=++.+.++|+.+++|+.-+... +.++.++
T Consensus 86 ~~~~~~~~i~~~~~~Gadgvii-~d----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~-----------e~l~~~~ 149 (244)
T PRK13125 86 YVDSLDNFLNMARDVGADGVLF-PD----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD-----------LLIHRLS 149 (244)
T ss_pred hhhCHHHHHHHHHHcCCCEEEE-CC----CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH-----------HHHHHHH
Confidence 1233333 67899999999999 31 112444456677888999999999999975421 1233444
Q ss_pred hccCCCCC-eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHHHHhcCCCCCEE
Q 025540 153 DRVSSWSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCKELAAQPDVDGF 230 (251)
Q Consensus 153 ~~i~~~~~-~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~~l~~~~~vDG~ 230 (251)
+. ... +++..+|. ||.. =++.+.+..+.+|+.. ++.+|..||+| +++|+..++. .++||+
T Consensus 150 ~~---~~~~l~msv~~~----~g~~-~~~~~~~~i~~lr~~~---------~~~~i~v~gGI~~~e~i~~~~~-~gaD~v 211 (244)
T PRK13125 150 KL---SPLFIYYGLRPA----TGVP-LPVSVERNIKRVRNLV---------GNKYLVVGFGLDSPEDARDALS-AGADGV 211 (244)
T ss_pred Hh---CCCEEEEEeCCC----CCCC-chHHHHHHHHHHHHhc---------CCCCEEEeCCcCCHHHHHHHHH-cCCCEE
Confidence 42 222 33577884 4543 3556666777777653 23579999999 8888877654 789999
Q ss_pred EEcCccCc
Q 025540 231 LVGGASLK 238 (251)
Q Consensus 231 LVG~asl~ 238 (251)
+||++-++
T Consensus 212 vvGSai~~ 219 (244)
T PRK13125 212 VVGTAFIE 219 (244)
T ss_pred EECHHHHH
Confidence 99998653
No 21
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.99 E-value=0.00016 Score=64.53 Aligned_cols=118 Identities=24% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHhCCCCEEEeC--chhhccccccChHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 025540 81 AEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (251)
Q Consensus 81 ~~mLkd~G~~~viiG--HSERR~~f~Etd~~i~~Kv~~al~~gl~pIl-CiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~ 157 (251)
.+.+++.|++.+++- |. +.+..=++.+.++|+.+++ |-=.|..+| ++.+++.-
T Consensus 97 i~~~~~aG~~giiipDl~~----------ee~~~~~~~~~~~g~~~i~~i~P~T~~~~------------i~~i~~~~-- 152 (242)
T cd04724 97 LRDAKEAGVDGLIIPDLPP----------EEAEEFREAAKEYGLDLIFLVAPTTPDER------------IKKIAELA-- 152 (242)
T ss_pred HHHHHHCCCcEEEECCCCH----------HHHHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHhhC--
Confidence 678999999999984 22 2445677888999999887 555554333 22333310
Q ss_pred CCC-eEEEEcccCccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc-cHHHHhcCCCCCEEEEcC
Q 025540 158 WSN-IVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA-NCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 158 ~~~-~iIAYEPvWAIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~ 234 (251)
..- .+++..|+ ||... -++.+.+.++.+|+. .++||+.||+|+.. |+..+... .||+.||+
T Consensus 153 ~~~vy~~s~~g~----tG~~~~~~~~~~~~i~~lr~~----------~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGS 216 (242)
T cd04724 153 SGFIYYVSRTGV----TGARTELPDDLKELIKRIRKY----------TDLPIAVGFGISTPEQAAEVAKY--ADGVIVGS 216 (242)
T ss_pred CCCEEEEeCCCC----CCCccCCChhHHHHHHHHHhc----------CCCcEEEEccCCCHHHHHHHHcc--CCEEEECH
Confidence 112 34567884 44322 345566677777763 25899999999955 88887764 99999998
Q ss_pred ccCc
Q 025540 235 ASLK 238 (251)
Q Consensus 235 asl~ 238 (251)
+-.+
T Consensus 217 aiv~ 220 (242)
T cd04724 217 ALVK 220 (242)
T ss_pred HHHH
Confidence 7443
No 22
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.99 E-value=4.6e-05 Score=68.28 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=96.6
Q ss_pred ccCCccccccc---cHHHHHhCC-CCEE---EeCchhhccccccChHHHHHHHHHHHHC---CCeEE-EEeCCcHHHHhc
Q 025540 69 VKKGGAFTGEI---SAEMLVNLE-IPWV---ILGHSERRLILNELNEFVGDKVAYALSQ---GLKVI-ACVGETLEQREA 137 (251)
Q Consensus 69 ~~~~Ga~TGei---S~~mLkd~G-~~~v---iiGHSERR~~f~Etd~~i~~Kv~~al~~---gl~pI-lCiGE~~~~r~~ 137 (251)
++..|+||-+= .+.|-+|++ .+|+ ++|. -+.++.+.. +.+++|.+. |++++ +|.......|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~Llpd~~----~tv~aa~~L~~~Gf~vlpyc~dd~~~ar-- 138 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGD--DKTLLPDPI----ETLKAAEILVKEGFTVLPYCTDDPVLAK-- 138 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--ccccccCHH----HHHHHHHHHHHCCCEEEEEeCCCHHHHH--
Confidence 67889999873 677888885 4565 4554 455565555 455555555 99999 9999876544
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCeEEEEccc--CccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC
Q 025540 138 GSTMDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN 214 (251)
Q Consensus 138 g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPv--WAIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~ 214 (251)
+ |.. .....| |+ -.||||+.. +|+.++ .|++. .++||+.+|+++
T Consensus 139 ---------~----l~~---~G~~~v---mPlg~pIGsg~Gi~~~~~I~----~I~e~----------~~vpVI~egGI~ 185 (248)
T cd04728 139 ---------R----LED---AGCAAV---MPLGSPIGSGQGLLNPYNLR----IIIER----------ADVPVIVDAGIG 185 (248)
T ss_pred ---------H----HHH---cCCCEe---CCCCcCCCCCCCCCCHHHHH----HHHHh----------CCCcEEEeCCCC
Confidence 2 222 233344 99 679999876 566555 44432 248999999999
Q ss_pred cccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHH
Q 025540 215 GANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 247 (251)
Q Consensus 215 ~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~ 247 (251)
.......+-+.+.||+|||+|-.+ .+-..|.+.
T Consensus 186 tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~a 219 (248)
T cd04728 186 TPSDAAQAMELGADAVLLNTAIAKAKDPVAMARA 219 (248)
T ss_pred CHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHH
Confidence 988888888999999999999888 444444443
No 23
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.99 E-value=4.8e-05 Score=68.26 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=96.2
Q ss_pred cccCCccccccc---cHHHHHhCCC-CEE---EeCchhhccccccChHHHHHHHHHHHHC---CCeEE-EEeCCcHHHHh
Q 025540 68 WVKKGGAFTGEI---SAEMLVNLEI-PWV---ILGHSERRLILNELNEFVGDKVAYALSQ---GLKVI-ACVGETLEQRE 136 (251)
Q Consensus 68 ~~~~~Ga~TGei---S~~mLkd~G~-~~v---iiGHSERR~~f~Etd~~i~~Kv~~al~~---gl~pI-lCiGE~~~~r~ 136 (251)
=++..|++|-|= .+.|-+|++. +|+ +||. .+..+.+.. ..+++|.+. |+.++ +|.......|
T Consensus 66 lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~llpd~~----~tv~aa~~L~~~Gf~vlpyc~~d~~~ak- 138 (250)
T PRK00208 66 LPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGD--DKTLLPDPI----ETLKAAEILVKEGFVVLPYCTDDPVLAK- 138 (250)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--CCCCCcCHH----HHHHHHHHHHHCCCEEEEEeCCCHHHHH-
Confidence 367889999874 6778888764 555 4555 344455544 455555555 99999 9999876444
Q ss_pred cCCcHHHHHHHHHHHHhccCCCCCeEEEEccc--CccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC
Q 025540 137 AGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV 213 (251)
Q Consensus 137 ~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPv--WAIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV 213 (251)
+ |.. .....| |+ -.||||+.. +|+. .+.|++. .++||+.+|+|
T Consensus 139 ----------~----l~~---~G~~~v---mPlg~pIGsg~gi~~~~~----i~~i~e~----------~~vpVIveaGI 184 (250)
T PRK00208 139 ----------R----LEE---AGCAAV---MPLGAPIGSGLGLLNPYN----LRIIIEQ----------ADVPVIVDAGI 184 (250)
T ss_pred ----------H----HHH---cCCCEe---CCCCcCCCCCCCCCCHHH----HHHHHHh----------cCCeEEEeCCC
Confidence 2 222 234444 99 569999886 4554 3344442 24899999999
Q ss_pred CcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHH
Q 025540 214 NGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 247 (251)
Q Consensus 214 ~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~ 247 (251)
........+-+.+.||+|||+|-.+ ++-..|.+.
T Consensus 185 ~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 185 GTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred CCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 9888888888899999999999888 454444443
No 24
>PLN02591 tryptophan synthase
Probab=97.94 E-value=9.5e-05 Score=66.61 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=82.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH-HHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL-EQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~-~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+++.|++.+||=- .-+ +....-...|.++||.+|+||--+. ++| ++.+.+ ..
T Consensus 99 ~~~~~~aGv~GviipD----LP~----ee~~~~~~~~~~~gl~~I~lv~Ptt~~~r------------i~~ia~----~~ 154 (250)
T PLN02591 99 MATIKEAGVHGLVVPD----LPL----EETEALRAEAAKNGIELVLLTTPTTPTER------------MKAIAE----AS 154 (250)
T ss_pred HHHHHHcCCCEEEeCC----CCH----HHHHHHHHHHHHcCCeEEEEeCCCCCHHH------------HHHHHH----hC
Confidence 6789999999999972 233 3334677788999999999995554 344 223332 12
Q ss_pred CeEEEEcccCccC----CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHHhcCCCCCEEEEc
Q 025540 160 NIVLAYEPVWAIG----TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 160 ~~iIAYEPvWAIG----tG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG 233 (251)
+-.| | .|+ ||... .++++++.++.+|+. .++||+.|-+|+ ++++.+ +...+.||+.||
T Consensus 155 ~gFI-Y----~Vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~Pv~vGFGI~~~e~v~~-~~~~GADGvIVG 218 (250)
T PLN02591 155 EGFV-Y----LVSSTGVTGARASVSGRVESLLQELKEV----------TDKPVAVGFGISKPEHAKQ-IAGWGADGVIVG 218 (250)
T ss_pred CCcE-E----EeeCCCCcCCCcCCchhHHHHHHHHHhc----------CCCceEEeCCCCCHHHHHH-HHhcCCCEEEEC
Confidence 2222 3 444 34333 378889889999873 258999999999 666665 555679999999
Q ss_pred CccCc
Q 025540 234 GASLK 238 (251)
Q Consensus 234 ~asl~ 238 (251)
++-++
T Consensus 219 SalVk 223 (250)
T PLN02591 219 SAMVK 223 (250)
T ss_pred HHHHH
Confidence 98644
No 25
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.94 E-value=0.0013 Score=56.22 Aligned_cols=135 Identities=20% Similarity=0.216 Sum_probs=83.9
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.++++++|++++++ |.+- + +...+-++.+.+.|+.+++=+.-+. . .++++...... .
T Consensus 72 ~~~~~~~gadgv~v-h~~~------~-~~~~~~~~~~~~~g~~~~~~~~~~t-------~----~e~~~~~~~~~----d 128 (210)
T TIGR01163 72 IEDFAEAGADIITV-HPEA------S-EHIHRLLQLIKDLGAKAGIVLNPAT-------P----LEFLEYVLPDV----D 128 (210)
T ss_pred HHHHHHcCCCEEEE-ccCC------c-hhHHHHHHHHHHcCCcEEEEECCCC-------C----HHHHHHHHhhC----C
Confidence 88999999999888 6532 2 2233555677788888777443321 0 11223332221 1
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
.|.|=|+..-+||....++.. +..+.+|+.+.+. ...++|+-+|+++++|+.+++ ..++||+-||++-.+ +
T Consensus 129 -~i~~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~~~-----~~~~~i~v~GGI~~env~~l~-~~gad~iivgsai~~~~ 200 (210)
T TIGR01163 129 -LVLLMSVNPGFGGQKFIPDTL-EKIREVRKMIDEN-----GLSILIEVDGGVNDDNARELA-EAGADILVAGSAIFGAD 200 (210)
T ss_pred -EEEEEEEcCCCCcccccHHHH-HHHHHHHHHHHhc-----CCCceEEEECCcCHHHHHHHH-HcCCCEEEEChHHhCCC
Confidence 233434444456665555444 3555566655321 234789999999999999877 689999999998876 5
Q ss_pred HHHHHHH
Q 025540 240 EFIDIIK 246 (251)
Q Consensus 240 ~F~~Ii~ 246 (251)
++..-++
T Consensus 201 d~~~~~~ 207 (210)
T TIGR01163 201 DYKEVIR 207 (210)
T ss_pred CHHHHHH
Confidence 5554444
No 26
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.70 E-value=0.0017 Score=56.21 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=79.6
Q ss_pred HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 82 ~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE-~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
+.++++|++++.+ +.+.++....-++.+++.|+.+.+=++. +..++ ++...... +-
T Consensus 78 ~~~~~~g~d~v~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~------------~~~~~~~~---d~ 134 (220)
T PRK05581 78 PDFAKAGADIITF--------HVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEP------------LEDVLDLL---DL 134 (220)
T ss_pred HHHHHcCCCEEEE--------eeccchhHHHHHHHHHHcCCEEEEEECCCCCHHH------------HHHHHhhC---CE
Confidence 6677999999644 2222233445577888899988776652 32222 11222211 11
Q ss_pred -eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-
Q 025540 161 -IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK- 238 (251)
Q Consensus 161 -~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~- 238 (251)
.+.+++| -+||. .......+..+.+|++.... +-..+|..+|+++++|+.++.. .++||+-||++-.+
T Consensus 135 i~~~~~~~---g~tg~-~~~~~~~~~i~~~~~~~~~~-----~~~~~i~v~GGI~~~nv~~l~~-~GaD~vvvgSai~~~ 204 (220)
T PRK05581 135 VLLMSVNP---GFGGQ-KFIPEVLEKIRELRKLIDER-----GLDILIEVDGGINADNIKECAE-AGADVFVAGSAVFGA 204 (220)
T ss_pred EEEEEECC---CCCcc-cccHHHHHHHHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHH-cCCCEEEEChhhhCC
Confidence 1244455 34554 43444455556666654321 1124577899999999999776 68999999999887
Q ss_pred hHHHHHHHHH
Q 025540 239 PEFIDIIKSA 248 (251)
Q Consensus 239 ~~F~~Ii~~~ 248 (251)
++..+.++.+
T Consensus 205 ~d~~~~~~~~ 214 (220)
T PRK05581 205 PDYKEAIDSL 214 (220)
T ss_pred CCHHHHHHHH
Confidence 5655444443
No 27
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.63 E-value=0.0012 Score=57.34 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=80.8
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
..+.+.+.|+++|++|.+-... +.+..=++.+...|+.+++++-... + ++.+.. +.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~~v~v~~~~-e-------------~~~~~~----~g 141 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDD------EQLKELYELARELGMEVLVEVHDEE-E-------------LERALA----LG 141 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeEEEEECCHH-H-------------HHHHHH----cC
Confidence 5788999999999999986532 4455566677889999999996332 2 222332 23
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..++.|=|... +-.....+ ..+.+++.+ ..++|++.+|+|+. +|+.+++. .++||++||+|-++
T Consensus 142 ~~~i~~t~~~~--~~~~~~~~----~~~~l~~~~--------~~~~pvia~gGI~s~edi~~~~~-~Ga~gvivGsai~~ 206 (217)
T cd00331 142 AKIIGINNRDL--KTFEVDLN----TTERLAPLI--------PKDVILVSESGISTPEDVKRLAE-AGADAVLIGESLMR 206 (217)
T ss_pred CCEEEEeCCCc--cccCcCHH----HHHHHHHhC--------CCCCEEEEEcCCCCHHHHHHHHH-cCCCEEEECHHHcC
Confidence 34566654321 11112222 222333221 13479999999976 88877765 58999999999887
Q ss_pred -hHHHHHHH
Q 025540 239 -PEFIDIIK 246 (251)
Q Consensus 239 -~~F~~Ii~ 246 (251)
.+..+-++
T Consensus 207 ~~~p~~~~~ 215 (217)
T cd00331 207 APDPGAALR 215 (217)
T ss_pred CCCHHHHHH
Confidence 55544443
No 28
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.62 E-value=0.0085 Score=49.31 Aligned_cols=143 Identities=20% Similarity=0.139 Sum_probs=84.3
Q ss_pred CceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC
Q 025540 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138 (251)
Q Consensus 59 ~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g 138 (251)
++.+.+|...-. .+.+. +.++..+++.|++++.++.+..-. -+....+.++++... .++..++.+.-..+...
T Consensus 57 ~~~~~~~~~~~~-~~~~~-~~~a~~~~~~g~d~v~l~~~~~~~--~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~-- 129 (200)
T cd04722 57 DLPLGVQLAIND-AAAAV-DIAAAAARAAGADGVEIHGAVGYL--AREDLELIRELREAV-PDVKVVVKLSPTGELAA-- 129 (200)
T ss_pred CCcEEEEEccCC-chhhh-hHHHHHHHHcCCCEEEEeccCCcH--HHHHHHHHHHHHHhc-CCceEEEEECCCCccch--
Confidence 566777775422 21111 123689999999999999887421 111222223333333 37877777764322110
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-cc
Q 025540 139 STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-AN 217 (251)
Q Consensus 139 ~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n 217 (251)
.+ +.. ..-..|.+.+.|.-+++....+.. ...++.. .. ..++||+++|+++. +|
T Consensus 130 -------~~----~~~---~g~d~i~~~~~~~~~~~~~~~~~~----~~~~~~~-~~------~~~~pi~~~GGi~~~~~ 184 (200)
T cd04722 130 -------AA----AEE---AGVDEVGLGNGGGGGGGRDAVPIA----DLLLILA-KR------GSKVPVIAGGGINDPED 184 (200)
T ss_pred -------hh----HHH---cCCCEEEEcCCcCCCCCccCchhH----HHHHHHH-Hh------cCCCCEEEECCCCCHHH
Confidence 00 211 223467888888877666555421 1112211 11 23589999999999 99
Q ss_pred HHHHhcCCCCCEEEEcC
Q 025540 218 CKELAAQPDVDGFLVGG 234 (251)
Q Consensus 218 ~~~l~~~~~vDG~LVG~ 234 (251)
+.+++.. +.||+.+|+
T Consensus 185 ~~~~~~~-Gad~v~vgs 200 (200)
T cd04722 185 AAEALAL-GADGVIVGS 200 (200)
T ss_pred HHHHHHh-CCCEEEecC
Confidence 9888886 899999996
No 29
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.57 E-value=0.0029 Score=54.03 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=83.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~-~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+++.++|++++++= .+..+....-++.+.+.|+.+.+=++.+ .++ +++.....
T Consensus 73 ~~~~~~~g~dgv~vh--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~----- 127 (211)
T cd00429 73 IEAFAKAGADIITFH--------AEATDHLHRTIQLIKELGMKAGVALNPGTPVE------------VLEPYLDE----- 127 (211)
T ss_pred HHHHHHcCCCEEEEC--------ccchhhHHHHHHHHHHCCCeEEEEecCCCCHH------------HHHHHHhh-----
Confidence 778889999998651 1111233355777788898877766532 222 12222221
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK- 238 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~- 238 (251)
...|.|=|++.-+||....+ ...+..+.+|+.+.+. +.++|++-+|+++++|+.++. ..++||+-||++-.+
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~-~~~~~i~~~~~~~~~~-----~~~~pi~v~GGI~~env~~~~-~~gad~iivgsai~~~ 200 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIP-EVLEKIRKLRELIPEN-----NLNLLIEVDGGINLETIPLLA-EAGADVLVAGSALFGS 200 (211)
T ss_pred CCEEEEEEECCCCCCcccCH-HHHHHHHHHHHHHHhc-----CCCeEEEEECCCCHHHHHHHH-HcCCCEEEECHHHhCC
Confidence 12333444443345654444 4445566677665322 234799999999999998866 468999999999887
Q ss_pred hHHHHHHHH
Q 025540 239 PEFIDIIKS 247 (251)
Q Consensus 239 ~~F~~Ii~~ 247 (251)
++..+-++.
T Consensus 201 ~~~~~~~~~ 209 (211)
T cd00429 201 DDYAEAIKE 209 (211)
T ss_pred CCHHHHHHH
Confidence 665555443
No 30
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.53 E-value=0.0043 Score=53.26 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEE--EcCccc--cHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCE
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVV--VSPPFV--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPW 91 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~--i~Pp~~--~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~ 91 (251)
+.+++.++++.+ .... +-+++. +..|+. .+..+++.. ++..+.+ |++..+.|.| ..+++.++|+++
T Consensus 10 ~~~~a~~~~~~l-~~~v---~~iev~~~l~~~~g~~~i~~l~~~~-~~~~i~~-d~k~~d~~~~----~~~~~~~~Gad~ 79 (206)
T TIGR03128 10 DIEEALELAEKV-ADYV---DIIEIGTPLIKNEGIEAVKEMKEAF-PDRKVLA-DLKTMDAGEY----EAEQAFAAGADI 79 (206)
T ss_pred CHHHHHHHHHHc-ccCe---eEEEeCCHHHHHhCHHHHHHHHHHC-CCCEEEE-EEeeccchHH----HHHHHHHcCCCE
Confidence 467888888876 3111 234542 222222 233333332 2445565 6665666654 689999999999
Q ss_pred EEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCc
Q 025540 92 VILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170 (251)
Q Consensus 92 viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC-iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWA 170 (251)
+.+ |.|. +...+.+=++.+.+.|+.+++= .+-. | ..+++..+.+ ..-.++...|...
T Consensus 80 i~v-h~~~------~~~~~~~~i~~~~~~g~~~~~~~~~~~--------t---~~~~~~~~~~----~g~d~v~~~pg~~ 137 (206)
T TIGR03128 80 VTV-LGVA------DDATIKGAVKAAKKHGKEVQVDLINVK--------D---KVKRAKELKE----LGADYIGVHTGLD 137 (206)
T ss_pred EEE-eccC------CHHHHHHHHHHHHHcCCEEEEEecCCC--------C---hHHHHHHHHH----cCCCEEEEcCCcC
Confidence 974 5553 1234556677788999998863 2321 0 1122223333 1223567777332
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHHh
Q 025540 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 249 (251)
Q Consensus 171 IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~~ 249 (251)
-.+-.+..++.++++.+.+. .++|.-=|+|+++|+.+++ ..++|++.+|++-.+ ++..+.++.+.
T Consensus 138 ~~~~~~~~~~~i~~l~~~~~-------------~~~i~v~GGI~~~n~~~~~-~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 138 EQAKGQNPFEDLQTILKLVK-------------EARVAVAGGINLDTIPDVI-KLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred cccCCCCCHHHHHHHHHhcC-------------CCcEEEECCcCHHHHHHHH-HcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 11112234444443333221 2456545889999999887 579999999999776 56666665543
No 31
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.42 E-value=0.0026 Score=56.23 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=87.5
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.+.|++++.+ |.|- ...+.+-++...++|+++-+-+.-... .+.+..+++.++ .=
T Consensus 74 i~~~~~~gad~i~~-H~Ea-------~~~~~~~l~~ik~~g~k~GlalnP~Tp-----------~~~i~~~l~~~D--~v 132 (220)
T PRK08883 74 IPDFAKAGASMITF-HVEA-------SEHVDRTLQLIKEHGCQAGVVLNPATP-----------LHHLEYIMDKVD--LI 132 (220)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHcCCcEEEEeCCCCC-----------HHHHHHHHHhCC--eE
Confidence 47889999997755 7773 234566778888999998877764321 124445555432 12
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++..-+|-.....=.+.+.+.+++ +|+.+.+. +.+++|.-.|+||++|+.++. ..++|++-+|++-.+ +
T Consensus 133 lvMtV~PGfgGq~fi~~~lekI~~----l~~~~~~~-----~~~~~I~vdGGI~~eni~~l~-~aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 133 LLMSVNPGFGGQSFIPHTLDKLRA----VRKMIDES-----GRDIRLEIDGGVKVDNIREIA-EAGADMFVAGSAIFGQP 202 (220)
T ss_pred EEEEecCCCCCceecHhHHHHHHH----HHHHHHhc-----CCCeeEEEECCCCHHHHHHHH-HcCCCEEEEeHHHhCCC
Confidence 557889954322222233444443 34443221 335889999999999997765 589999999998765 5
Q ss_pred HHHHHHHHH
Q 025540 240 EFIDIIKSA 248 (251)
Q Consensus 240 ~F~~Ii~~~ 248 (251)
++.+.++.+
T Consensus 203 d~~~~i~~l 211 (220)
T PRK08883 203 DYKAVIDEM 211 (220)
T ss_pred CHHHHHHHH
Confidence 555555543
No 32
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.37 E-value=0.0032 Score=56.79 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=80.5
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI-lCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+++.|++++++= .+..+....-+..+.++|+.++ +|-=.|..+| ++.+++.. .
T Consensus 108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er------------i~~i~~~~---~ 164 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER------------LKQIAEKS---Q 164 (256)
T ss_pred HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH------------HHHHHHhC---C
Confidence 778999999999883 4455667788889999999988 6666664444 22333321 1
Q ss_pred CeEEEEcccCccC-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHHhcCCCCCEEEEcCcc
Q 025540 160 NIVLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 160 ~~iIAYEPvWAIG-tG~~-a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~as 236 (251)
..+ -|=.+- | ||.. .-++++.+.++.+|+.. +.||..||+|+ ++++.. +...+.||+.||++-
T Consensus 165 gfi-y~vs~~--G~TG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgfGI~~~e~~~~-~~~~GADgvVvGSai 230 (256)
T TIGR00262 165 GFV-YLVSRA--GVTGARNRAASALNELVKRLKAYS----------AKPVLVGFGISKPEQVKQ-AIDAGADGVIVGSAI 230 (256)
T ss_pred CCE-EEEECC--CCCCCcccCChhHHHHHHHHHhhc----------CCCEEEeCCCCCHHHHHH-HHHcCCCEEEECHHH
Confidence 122 111221 4 5654 23455777777777642 25899999998 777766 555779999999986
Q ss_pred Cc
Q 025540 237 LK 238 (251)
Q Consensus 237 l~ 238 (251)
.+
T Consensus 231 v~ 232 (256)
T TIGR00262 231 VK 232 (256)
T ss_pred HH
Confidence 54
No 33
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.23 E-value=0.01 Score=50.53 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCcc------ccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCC
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF------VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLE 88 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~------~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G 88 (251)
.+.+++.++++.+.+. . +-+++ -.|+ ..+..+++.. +++.+.+--.- .+.+ ..-++.+.++|
T Consensus 10 ~~~~~~~~~~~~l~~~-i---~~iei--g~~~~~~~g~~~i~~i~~~~-~~~~i~~~~~v-~~~~----~~~~~~~~~aG 77 (202)
T cd04726 10 LDLEEALELAKKVPDG-V---DIIEA--GTPLIKSEGMEAVRALREAF-PDKIIVADLKT-ADAG----ALEAEMAFKAG 77 (202)
T ss_pred CCHHHHHHHHHHhhhc-C---CEEEc--CCHHHHHhCHHHHHHHHHHC-CCCEEEEEEEe-cccc----HHHHHHHHhcC
Confidence 4578888888887764 2 33454 3333 2334443332 24555443211 1222 23458899999
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE-EeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEc
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGET-LEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYE 166 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl-CiGE~-~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYE 166 (251)
++++++ |.|- +.+....=++.+.++|+.+++ |++=. .++. + ..+. ..-.++.+.
T Consensus 78 ad~i~~-h~~~------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~------------~-~~~~----~~~d~v~~~ 133 (202)
T cd04726 78 ADIVTV-LGAA------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR------------A-KLLK----LGVDIVILH 133 (202)
T ss_pred CCEEEE-EeeC------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH------------H-HHHH----CCCCEEEEc
Confidence 999987 2222 112344556677789999986 44432 1111 1 1222 112245566
Q ss_pred ccCccCCC-CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHH
Q 025540 167 PVWAIGTG-KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 244 (251)
Q Consensus 167 PvWAIGtG-~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~I 244 (251)
|.-.-++. ....++.++ .+++. .+++|.-+|+|+++|+.+++. .++||+.+|++-.+ ++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~i~----~~~~~----------~~~~i~~~GGI~~~~i~~~~~-~Gad~vvvGsai~~~~d~~~~ 198 (202)
T cd04726 134 RGIDAQAAGGWWPEDDLK----KVKKL----------LGVKVAVAGGITPDTLPEFKK-AGADIVIVGRAITGAADPAEA 198 (202)
T ss_pred CcccccccCCCCCHHHHH----HHHhh----------cCCCEEEECCcCHHHHHHHHh-cCCCEEEEeehhcCCCCHHHH
Confidence 64322322 223343333 22221 248999999999999988775 59999999998766 566555
Q ss_pred HH
Q 025540 245 IK 246 (251)
Q Consensus 245 i~ 246 (251)
++
T Consensus 199 ~~ 200 (202)
T cd04726 199 AR 200 (202)
T ss_pred Hh
Confidence 44
No 34
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.13 E-value=0.014 Score=53.02 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=77.9
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH-HHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL-EQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~-~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+++.|++.+|+ ..+.-+....=.+.+.++|+.+|+=|--+. ++| ++.+.+. .+
T Consensus 112 ~~~~~~aGvdgvii--------pDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~er------------i~~i~~~---a~ 168 (263)
T CHL00200 112 IKKISQAGVKGLII--------PDLPYEESDYLISVCNLYNIELILLIAPTSSKSR------------IQKIARA---AP 168 (263)
T ss_pred HHHHHHcCCeEEEe--------cCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHH------------HHHHHHh---CC
Confidence 56778999999987 233334455667778899999888777654 222 2233321 12
Q ss_pred CeE--EEEcccCccC-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHHhcCCCCCEEEEcC
Q 025540 160 NIV--LAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 160 ~~i--IAYEPvWAIG-tG~~-a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~ 234 (251)
.++ ++ .| | ||.. .-++++.+..+.+|+. .+.||..|++|+ ++++.+ +...+.||+.||+
T Consensus 169 gFIY~vS-~~----GvTG~~~~~~~~~~~~i~~ir~~----------t~~Pi~vGFGI~~~e~~~~-~~~~GADGvVVGS 232 (263)
T CHL00200 169 GCIYLVS-TT----GVTGLKTELDKKLKKLIETIKKM----------TNKPIILGFGISTSEQIKQ-IKGWNINGIVIGS 232 (263)
T ss_pred CcEEEEc-CC----CCCCCCccccHHHHHHHHHHHHh----------cCCCEEEECCcCCHHHHHH-HHhcCCCEEEECH
Confidence 222 23 22 3 4543 3467788888888874 248999999999 667766 5556799999999
Q ss_pred ccC
Q 025540 235 ASL 237 (251)
Q Consensus 235 asl 237 (251)
|-+
T Consensus 233 alv 235 (263)
T CHL00200 233 ACV 235 (263)
T ss_pred HHH
Confidence 864
No 35
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.01 E-value=0.014 Score=52.79 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=92.5
Q ss_pred cccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE
Q 025540 46 FVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125 (251)
Q Consensus 46 ~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI 125 (251)
+-+|..+++.+. +.|-..|. .|=+.-.....++|++.|++.-+=++ ++.+..=+..|.+.|+.++
T Consensus 100 ~~~l~~v~~~v~--iPvl~kdf-------i~~~~qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~l 164 (260)
T PRK00278 100 LEYLRAARAAVS--LPVLRKDF-------IIDPYQIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDVL 164 (260)
T ss_pred HHHHHHHHHhcC--CCEEeeee-------cCCHHHHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeEE
Confidence 445566655543 33333442 22233577889999999999988743 3678888999999999999
Q ss_pred EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcc
Q 025540 126 ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAAT 205 (251)
Q Consensus 126 lCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i 205 (251)
+|+-...|-. .+++ ....+|.|=| +-..|-. .+.+. +.+.++. + ....
T Consensus 165 vevh~~~E~~--------------~A~~----~gadiIgin~-rdl~~~~-~d~~~---~~~l~~~-~--------p~~~ 212 (260)
T PRK00278 165 VEVHDEEELE--------------RALK----LGAPLIGINN-RNLKTFE-VDLET---TERLAPL-I--------PSDR 212 (260)
T ss_pred EEeCCHHHHH--------------HHHH----cCCCEEEECC-CCccccc-CCHHH---HHHHHHh-C--------CCCC
Confidence 9998765332 2232 2344666632 2222221 12332 2222221 1 1134
Q ss_pred eEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHH
Q 025540 206 RIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 206 ~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
+++-.|++ +++|+..++. .++||++||++-++ ++-.+-++
T Consensus 213 ~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred EEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHHHHH
Confidence 66666666 6888877776 59999999999887 44444333
No 36
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.75 E-value=0.27 Score=42.80 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=29.4
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++|++.+|++ +++++.+++. .+.||+++|++-.+
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~-~GadgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALE-LGAHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHH-CCCCEEEEchHhcC
Confidence 4899999999 5899988777 56999999998776
No 37
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.57 E-value=0.093 Score=46.16 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=80.4
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiG-E~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+.+.|+++|.+ |-|. ..++.....++.+++.|+.+-+=+. .|.. ++++..++.. .
T Consensus 81 ~~~~~~~gad~v~v-H~~q-----~~~d~~~~~~~~i~~~g~~iGls~~~~t~~------------~~~~~~~~~~---~ 139 (229)
T PLN02334 81 VPDFAKAGASIFTF-HIEQ-----ASTIHLHRLIQQIKSAGMKAGVVLNPGTPV------------EAVEPVVEKG---L 139 (229)
T ss_pred HHHHHHcCCCEEEE-eecc-----ccchhHHHHHHHHHHCCCeEEEEECCCCCH------------HHHHHHHhcc---C
Confidence 57779999999943 2221 0223556788888899986544443 2321 2233444420 0
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK- 238 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~- 238 (251)
..+|.+=|++.-.||....+.-.+. .+.+|+.+ .+++|.-=|+++++|+.++. ..++||+-+|++-..
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~-i~~~~~~~---------~~~~I~a~GGI~~e~i~~l~-~aGad~vvvgsai~~~ 208 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDK-VRALRKKY---------PELDIEVDGGVGPSTIDKAA-EAGANVIVAGSAVFGA 208 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHH-HHHHHHhC---------CCCcEEEeCCCCHHHHHHHH-HcCCCEEEEChHHhCC
Confidence 2345556777644554444444333 33344431 23689888999999998876 489999999998776
Q ss_pred hHHHHHHH
Q 025540 239 PEFIDIIK 246 (251)
Q Consensus 239 ~~F~~Ii~ 246 (251)
++..+.++
T Consensus 209 ~d~~~~~~ 216 (229)
T PLN02334 209 PDYAEVIS 216 (229)
T ss_pred CCHHHHHH
Confidence 55444443
No 38
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.53 E-value=0.058 Score=47.02 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=72.3
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~ 158 (251)
-..+.++++|++.+.++..+ +. .-++.+.+.++.+++-+-.. ++++.+.+ .
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~-------~~----~~~~~~~~~~i~~i~~v~~~--------------~~~~~~~~----~ 121 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGP-------PA----EVVERLKAAGIKVIPTVTSV--------------EEARKAEA----A 121 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCC-------CH----HHHHHHHHcCCEEEEeCCCH--------------HHHHHHHH----c
Confidence 35788899999999998762 22 23344456788877755321 12223222 1
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccC
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl 237 (251)
....|.|.+.-.-|++.+.+.. ..+..+.+|+.+ ++||+-+|++++ +|+.+++. .+.||+.||++-+
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~-~~~~i~~i~~~~----------~~Pvi~~GGI~~~~~v~~~l~-~GadgV~vgS~l~ 189 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIG-TFALVPEVRDAV----------DIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFL 189 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccC-HHHHHHHHHHHh----------CCCEEEECCCCCHHHHHHHHH-cCCcEEEEchhhh
Confidence 2235667775333333222111 123333444321 479999999998 89998775 7899999999877
Q ss_pred c
Q 025540 238 K 238 (251)
Q Consensus 238 ~ 238 (251)
.
T Consensus 190 ~ 190 (236)
T cd04730 190 A 190 (236)
T ss_pred c
Confidence 5
No 39
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.37 E-value=0.07 Score=51.15 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred cccCCccccccccHHHHHhCCCCEEEeCchhhccccccC-hHHHHHHHHHHHHCCCeEEEEeCC--cHHHHhcCCcHHHH
Q 025540 68 WVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNEL-NEFVGDKVAYALSQGLKVIACVGE--TLEQREAGSTMDVV 144 (251)
Q Consensus 68 ~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIlCiGE--~~~~r~~g~~~~~~ 144 (251)
=..+.|.|. .+++.+.|++++.+ | .|. .+.+.+-++.+.+.|+.+++|.=. +..+
T Consensus 234 K~~Di~~~v----v~~~a~aGAD~vTV-H-------~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e---------- 291 (391)
T PRK13307 234 KTLDTGNLE----ARMAADATADAVVI-S-------GLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVK---------- 291 (391)
T ss_pred cccChhhHH----HHHHHhcCCCEEEE-e-------ccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHH----------
Confidence 345666665 88999999999977 2 233 447888999999999999997322 2222
Q ss_pred HHHHHHHHhccCCCCCeEEE--EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHh
Q 025540 145 AAQTKAIADRVSSWSNIVLA--YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELA 222 (251)
Q Consensus 145 ~~Ql~~~l~~i~~~~~~iIA--YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~ 222 (251)
.++.++..+ .-+.+- ++|- +.....+ -++.+|+. ..+++|...|+|+++|+.++.
T Consensus 292 --~i~~l~~~v---D~Vllht~vdp~-----~~~~~~~----kI~~ikk~---------~~~~~I~VdGGI~~eti~~l~ 348 (391)
T PRK13307 292 --LLESLKVKP---DVVELHRGIDEE-----GTEHAWG----NIKEIKKA---------GGKILVAVAGGVRVENVEEAL 348 (391)
T ss_pred --HHHHhhCCC---CEEEEccccCCC-----cccchHH----HHHHHHHh---------CCCCcEEEECCcCHHHHHHHH
Confidence 122222221 112222 4442 2212222 22334433 234889999999999987766
Q ss_pred cCCCCCEEEEcCccCc-hHHHHHHH
Q 025540 223 AQPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 223 ~~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
..++|++.+||+-.+ ++..+.++
T Consensus 349 -~aGADivVVGsaIf~a~Dp~~aak 372 (391)
T PRK13307 349 -KAGADILVVGRAITKSKDVRRAAE 372 (391)
T ss_pred -HcCCCEEEEeHHHhCCCCHHHHHH
Confidence 589999999998554 44433333
No 40
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.32 E-value=0.0047 Score=55.86 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=80.8
Q ss_pred CceEeeecccccCCccccccccHHHHHhCCCCEEE----eCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 025540 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI----LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ 134 (251)
Q Consensus 59 ~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~vi----iGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~ 134 (251)
.+.+|-|=+ +.+. .-+...-+..|+++|= +|+.--..-+-|.+.-=..+.++.+... ..|++ .-...
T Consensus 80 ~~p~GVnvL-~nd~-----~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ila--DV~~k 150 (254)
T PF03437_consen 80 SVPVGVNVL-RNDP-----KAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILA--DVHVK 150 (254)
T ss_pred CCCEEeeee-cCCC-----HHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEe--eechh
Confidence 456775543 2222 2244555667777763 4555444444455544445566666677 44553 22211
Q ss_pred HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC
Q 025540 135 REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN 214 (251)
Q Consensus 135 r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~ 214 (251)
...--...-+.+.++...... ...-+|.=- -.||.+++++++++ +|+. .+ +|||-|++|+
T Consensus 151 h~~~l~~~~~~~~~~~a~~~~--~aDaviVtG----~~TG~~~~~~~l~~----vr~~---------~~-~PVlvGSGvt 210 (254)
T PF03437_consen 151 HSSPLATRDLEEAAKDAVERG--GADAVIVTG----KATGEPPDPEKLKR----VREA---------VP-VPVLVGSGVT 210 (254)
T ss_pred hcccCCCCCHHHHHHHHHHhc--CCCEEEECC----cccCCCCCHHHHHH----HHhc---------CC-CCEEEecCCC
Confidence 111111111333333332211 122222211 13788999999874 3443 22 8999999999
Q ss_pred cccHHHHhcCCCCCEEEEcCc
Q 025540 215 GANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 215 ~~n~~~l~~~~~vDG~LVG~a 235 (251)
++|+.+++. ..||+.||+.
T Consensus 211 ~~Ni~~~l~--~ADG~IVGS~ 229 (254)
T PF03437_consen 211 PENIAEYLS--YADGAIVGSY 229 (254)
T ss_pred HHHHHHHHH--hCCEEEEeee
Confidence 999999987 5899999976
No 41
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.27 E-value=0.067 Score=47.57 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=84.9
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHh-----------cCCcHHH-HHHH
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQRE-----------AGSTMDV-VAAQ 147 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~-----------~g~~~~~-~~~Q 147 (251)
-++++.+.|.+.++||=|- +.|.+.+.+-+.+..+..+..|+=.|....--. +++..++ +-.|
T Consensus 19 ~~~~~~~~gtdai~vGGS~-----~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 93 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQ-----GVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQ 93 (223)
T ss_pred HHHHHHhcCCCEEEEcCCC-----cccHHHHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHH
Confidence 4578889999999999984 455566667777777888666766776542111 1112333 4444
Q ss_pred HHHHHhccCC--CCCeEEEE---cccCccC---CCCC--CCHHHHHHHHHHHHHHHHhc---------CCc---------
Q 025540 148 TKAIADRVSS--WSNIVLAY---EPVWAIG---TGKV--ATPAQAQEVHFELRKWLLAN---------TSP--------- 199 (251)
Q Consensus 148 l~~~l~~i~~--~~~~iIAY---EPvWAIG---tG~~--a~~e~i~~~~~~IR~~l~~~---------~~~--------- 199 (251)
.+++. .+.. .+-+--+| +|--+.| .-++ -+.+++....+.-.+.+.-. ++.
T Consensus 94 ~~~~~-~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~ 172 (223)
T TIGR01768 94 IEAAP-KFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAE 172 (223)
T ss_pred HHHHH-HHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHH
Confidence 44332 2211 11111233 3322222 1111 23333332222222222111 000
Q ss_pred --cccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 200 --EIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 200 --~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+...++|++|||+++.....+-+...++|++.||++..+
T Consensus 173 v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 173 VKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred HHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 001258999999999988888888789999999999887
No 42
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.14 E-value=0.092 Score=44.85 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=73.9
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
..+++.++|+++|.+ |++-. .. ..++..+..+..+-+-+. |.++ +..... ..
T Consensus 73 ~~~~a~~~gad~vh~-~~~~~-----~~----~~~~~~~~~~~~~g~~~~-t~~e-------------~~~a~~----~g 124 (212)
T PRK00043 73 RVDLALAVGADGVHL-GQDDL-----PV----ADARALLGPDAIIGLSTH-TLEE-------------AAAALA----AG 124 (212)
T ss_pred hHHHHHHcCCCEEec-CcccC-----CH----HHHHHHcCCCCEEEEeCC-CHHH-------------HHHHhH----cC
Confidence 468999999999877 44321 11 234444456666655444 3211 111111 12
Q ss_pred CeEEEEcccCccCCCCCCC----HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 160 NIVLAYEPVWAIGTGKVAT----PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~----~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-.+|..-|+..-++..... .+.++++.+.+ +++||+--|+|+++|+.+++. .++||+.+|++
T Consensus 125 aD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~v~a~GGI~~~~i~~~~~-~Ga~gv~~gs~ 190 (212)
T PRK00043 125 ADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-------------GDIPIVAIGGITPENAPEVLE-AGADGVAVVSA 190 (212)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-------------CCCCEEEECCcCHHHHHHHHH-cCCCEEEEeHH
Confidence 2355666777766554332 34444332221 138899999999999987776 69999999998
Q ss_pred cCc-hHHHHHH
Q 025540 236 SLK-PEFIDII 245 (251)
Q Consensus 236 sl~-~~F~~Ii 245 (251)
-++ ++..+.+
T Consensus 191 i~~~~d~~~~~ 201 (212)
T PRK00043 191 ITGAEDPEAAA 201 (212)
T ss_pred hhcCCCHHHHH
Confidence 776 4443333
No 43
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=95.95 E-value=0.012 Score=53.36 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=73.2
Q ss_pred cHHHHHhCCCCEEEe----CchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 025540 80 SAEMLVNLEIPWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (251)
Q Consensus 80 S~~mLkd~G~~~vii----GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i 155 (251)
+...-+..|++||=+ |+.-.-.=+=|.+.-=..+.++.+..+ |-....-......--...-+.+.++.....
T Consensus 94 al~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~---v~i~adV~~kh~~~l~~~~~~e~a~~~~~~- 169 (257)
T TIGR00259 94 ALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSE---VKILADIVVKHAVHLGNRDLESIALDTVER- 169 (257)
T ss_pred HHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCC---cEEEeceeecccCcCCCCCHHHHHHHHHHh-
Confidence 456667888888644 444433333345443334455554433 333333221111100011233344433321
Q ss_pred CCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 156 ~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
....-+|.= --|||.+++++.++. +|+. ..++|+|-||+|+++|+.+++.. .||+-||+.
T Consensus 170 -~~aDavivt----G~~TG~~~d~~~l~~----vr~~---------~~~~PvllggGvt~eNv~e~l~~--adGviVgS~ 229 (257)
T TIGR00259 170 -GLADAVILS----GKTTGTEVDLELLKL----AKET---------VKDTPVLAGSGVNLENVEELLSI--ADGVIVATT 229 (257)
T ss_pred -cCCCEEEEC----cCCCCCCCCHHHHHH----HHhc---------cCCCeEEEECCCCHHHHHHHHhh--CCEEEECCC
Confidence 112333322 225899999998873 3432 23479999999999999999995 999999875
No 44
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.94 E-value=0.13 Score=49.51 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred ccccHHHHHhCCCCEEEe-CchhhccccccChHHHHHHHHHHHHCCCeEEE-EeC-CcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 77 GEISAEMLVNLEIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVG-ETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 77 GeiS~~mLkd~G~~~vii-GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl-CiG-E~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
|++..++..++|++++.+ |=+ ++..+..=++.+.++|+.+++ |+. ++..++ ++.+.+
T Consensus 70 g~~~v~~a~~aGAdgV~v~g~~--------~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~------------~~~a~~ 129 (430)
T PRK07028 70 GAIEVEMAAKAGADIVCILGLA--------DDSTIEDAVRAARKYGVRLMADLINVPDPVKR------------AVELEE 129 (430)
T ss_pred hHHHHHHHHHcCCCEEEEecCC--------ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHH------------HHHHHh
Confidence 466999999999999885 311 122345566778889999887 655 343222 223332
Q ss_pred ccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 154 ~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
..-.+|...|... +.+..+.. ...+|+.... .++||+-.|+|+++|+.+++. .++||+-+|
T Consensus 130 ----~GaD~I~~~pg~~---~~~~~~~~----~~~l~~l~~~-------~~iPI~a~GGI~~~n~~~~l~-aGAdgv~vG 190 (430)
T PRK07028 130 ----LGVDYINVHVGID---QQMLGKDP----LELLKEVSEE-------VSIPIAVAGGLDAETAAKAVA-AGADIVIVG 190 (430)
T ss_pred ----cCCCEEEEEeccc---hhhcCCCh----HHHHHHHHhh-------CCCcEEEECCCCHHHHHHHHH-cCCCEEEEC
Confidence 1122345556432 21211111 1244443221 138999999999999988766 579999999
Q ss_pred CccCc-hHHHHHHH
Q 025540 234 GASLK-PEFIDIIK 246 (251)
Q Consensus 234 ~asl~-~~F~~Ii~ 246 (251)
++-.+ ++..+.++
T Consensus 191 saI~~~~d~~~~~~ 204 (430)
T PRK07028 191 GNIIKSADVTEAAR 204 (430)
T ss_pred hHHcCCCCHHHHHH
Confidence 99776 45444443
No 45
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.91 E-value=0.069 Score=47.29 Aligned_cols=129 Identities=16% Similarity=0.097 Sum_probs=79.1
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHH---hcCCcHHHHHHHHHHHHhccC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQR---EAGSTMDVVAAQTKAIADRVS 156 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r---~~g~~~~~~~~Ql~~~l~~i~ 156 (251)
.++.+-+.||+.|++|=+=-+ |+.+ +++..... +=..|+|+.=..... ..+.+...+.+++... .
T Consensus 92 dv~~~l~~Ga~~viigt~~~~------~~~~-~~~~~~~~-~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 159 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLP------SDDD-EDRLAALG-EQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-P--- 159 (233)
T ss_pred HHHHHHHcCCCeEEEcceecc------chHH-HHHHHhcC-CCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-C---
Confidence 455677899999999965322 2222 22222221 126788887542211 2334455555555443 2
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
+. +-|=-+-.-||+..+..+.++++.+. ..+|++|||+|+.-...+-+...++||++||+|-
T Consensus 160 --~~--li~~di~~~G~~~g~~~~~~~~i~~~--------------~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 160 --EE--LIVLDIDRVGSGQGPDLELLERLAAR--------------ADIPVIAAGGVRSVEDLELLKKLGASGALVASAL 221 (233)
T ss_pred --Ce--EEEEEcCccccCCCcCHHHHHHHHHh--------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHH
Confidence 12 23334556788877777666654332 1489999999999777766667899999999987
Q ss_pred Cc
Q 025540 237 LK 238 (251)
Q Consensus 237 l~ 238 (251)
+.
T Consensus 222 ~~ 223 (233)
T cd04723 222 HD 223 (233)
T ss_pred Hc
Confidence 65
No 46
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.86 E-value=0.092 Score=45.77 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCC-eEEEEeCCc----HH---HHhcCCcHHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-KVIACVGET----LE---QREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl-~pIlCiGE~----~~---~r~~g~~~~~~~~Ql~~~l 152 (251)
++.+.+.||+.|++|-+-- . +. ..-+++... .|- ..++++.=. .. ......+...+.+++...
T Consensus 88 ~~~~~~~Gad~vvigs~~l----~-dp-~~~~~i~~~--~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAV----K-NP-ELVKELLKE--YGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL- 158 (234)
T ss_pred HHHHHHcCCCEEEECchHH----h-Ch-HHHHHHHHH--cCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc-
Confidence 4555679999999997753 2 22 222333332 333 444554300 00 001122222233333221
Q ss_pred hccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCccc-HHHHhcCCCCCEEE
Q 025540 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN-CKELAAQPDVDGFL 231 (251)
Q Consensus 153 ~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n-~~~l~~~~~vDG~L 231 (251)
. .+. |.|=++..-|+...+..+.++++. +. -++||+++|.++..+ +.+++. .++||++
T Consensus 159 ---g-a~~--iii~~~~~~g~~~g~~~~~i~~i~----~~----------~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~ 217 (234)
T cd04732 159 ---G-VKA--IIYTDISRDGTLSGPNFELYKELA----AA----------TGIPVIASGGVSSLDDIKALKE-LGVAGVI 217 (234)
T ss_pred ---C-CCE--EEEEeecCCCccCCCCHHHHHHHH----Hh----------cCCCEEEecCCCCHHHHHHHHH-CCCCEEE
Confidence 0 222 334467788887666655544433 22 148999999999876 445544 6999999
Q ss_pred EcCccCc
Q 025540 232 VGGASLK 238 (251)
Q Consensus 232 VG~asl~ 238 (251)
||++-++
T Consensus 218 vg~~~~~ 224 (234)
T cd04732 218 VGKALYE 224 (234)
T ss_pred EeHHHHc
Confidence 9999876
No 47
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.71 E-value=0.16 Score=44.97 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=90.4
Q ss_pred cccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHH
Q 025540 66 NCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVA 145 (251)
Q Consensus 66 n~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~ 145 (251)
|+|.. ..|.+--.+.+.++|++++.+ |.|- ++..+.+-++.+.+.|+.+-+.+.-.. ..
T Consensus 69 DvHLm---~~~p~~~i~~~~~~Gad~itv-H~ea------~~~~~~~~l~~ik~~G~~~gval~p~t-------~~---- 127 (228)
T PTZ00170 69 DCHLM---VSNPEKWVDDFAKAGASQFTF-HIEA------TEDDPKAVARKIREAGMKVGVAIKPKT-------PV---- 127 (228)
T ss_pred EEEEC---CCCHHHHHHHHHHcCCCEEEE-eccC------CchHHHHHHHHHHHCCCeEEEEECCCC-------CH----
Confidence 77766 345555669999999999988 6552 233377778888889988777665321 11
Q ss_pred HHHHHHH--hccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc
Q 025540 146 AQTKAIA--DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA 223 (251)
Q Consensus 146 ~Ql~~~l--~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~ 223 (251)
++++..+ ..++. =++++.||-.+ |....++-.+++. .+|+. + ..+.|.--|+|+++|+.++..
T Consensus 128 e~l~~~l~~~~vD~--Vl~m~v~pG~~---gq~~~~~~~~ki~-~~~~~----~-----~~~~I~VdGGI~~~ti~~~~~ 192 (228)
T PTZ00170 128 EVLFPLIDTDLVDM--VLVMTVEPGFG---GQSFMHDMMPKVR-ELRKR----Y-----PHLNIQVDGGINLETIDIAAD 192 (228)
T ss_pred HHHHHHHccchhhh--HHhhhcccCCC---CcEecHHHHHHHH-HHHHh----c-----ccCeEEECCCCCHHHHHHHHH
Confidence 2333333 21110 12478888543 5666655555443 23442 1 136788999999999976554
Q ss_pred CCCCCEEEEcCccCc-hHHHHHHH
Q 025540 224 QPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 224 ~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
.++|.+.+|++-.+ +++.+.++
T Consensus 193 -aGad~iVvGsaI~~a~d~~~~~~ 215 (228)
T PTZ00170 193 -AGANVIVAGSSIFKAKDRKQAIE 215 (228)
T ss_pred -cCCCEEEEchHHhCCCCHHHHHH
Confidence 69999999998665 44444443
No 48
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.65 E-value=0.081 Score=46.15 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=39.3
Q ss_pred ccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccCc
Q 025540 167 PVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 167 PvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++=.-|+..-++.+.++++.+. -.+|++++|+|+.- .+.+++...++||++||+|-++
T Consensus 167 ~~~~~g~~~G~d~~~i~~l~~~--------------~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 167 DISRDGTLSGPNVEATRELAAA--------------VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred eecCcCCcCCCCHHHHHHHHHh--------------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4445566665666666644321 13899999999885 4555555555999999999775
No 49
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.53 E-value=0.33 Score=43.32 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=87.5
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCC--eEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL--KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl--~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~ 158 (251)
.+.+.++|++++.+ |.|- ...+.+-++...++|+ ++=+.+.=.. . .+++...++.++
T Consensus 84 i~~~~~aGad~It~-H~Ea-------~~~~~~~l~~Ik~~g~~~kaGlalnP~T-------p----~~~i~~~l~~vD-- 142 (228)
T PRK08091 84 AKACVAAGADIVTL-QVEQ-------THDLALTIEWLAKQKTTVLIGLCLCPET-------P----ISLLEPYLDQID-- 142 (228)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHCCCCceEEEEECCCC-------C----HHHHHHHHhhcC--
Confidence 47789999997754 7773 2235566777888998 7766665321 1 124455565443
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.=++..-||-. .|+..-++-.+++. .+|+.+.+. +-++.|--=|+||.+|+.. +.+.++|.+.+|++-.+
T Consensus 143 ~VLiMtV~PGf---gGQ~f~~~~l~KI~-~lr~~~~~~-----~~~~~IeVDGGI~~~ti~~-l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 143 LIQILTLDPRT---GTKAPSDLILDRVI-QVENRLGNR-----RVEKLISIDGSMTLELASY-LKQHQIDWVVSGSALFS 212 (228)
T ss_pred EEEEEEECCCC---CCccccHHHHHHHH-HHHHHHHhc-----CCCceEEEECCCCHHHHHH-HHHCCCCEEEEChhhhC
Confidence 12568899943 36665544333332 334444331 3357799999999999975 45589999888887655
Q ss_pred -hHHHHHHHHHh
Q 025540 239 -PEFIDIIKSAE 249 (251)
Q Consensus 239 -~~F~~Ii~~~~ 249 (251)
+++.+.++...
T Consensus 213 ~~d~~~~i~~l~ 224 (228)
T PRK08091 213 QGELKTTLKEWK 224 (228)
T ss_pred CCCHHHHHHHHH
Confidence 56666666543
No 50
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.27 E-value=0.089 Score=48.46 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=28.7
Q ss_pred cceEE--EccCC-CcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~il--YGGSV-~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||+ --|.| +|+|+..++. .++||++||++-.+
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~k 239 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFK 239 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhc
Confidence 37886 66667 9999988885 89999999999875
No 51
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.13 E-value=0.22 Score=45.23 Aligned_cols=121 Identities=24% Similarity=0.276 Sum_probs=74.1
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE-~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+++.|++.+||=--= +.|.+ .=...|.++||.+|.=|-- |.++| ++.+.+. .+
T Consensus 108 ~~~~~~aGvdGlIipDLP----~ee~~----~~~~~~~~~gl~~I~lv~p~t~~~R------------i~~i~~~---a~ 164 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLP----PEESE----ELREAAKKHGLDLIPLVAPTTPEER------------IKKIAKQ---AS 164 (259)
T ss_dssp HHHHHHHTEEEEEETTSB----GGGHH----HHHHHHHHTT-EEEEEEETTS-HHH------------HHHHHHH----S
T ss_pred HHHHHHcCCCEEEEcCCC----hHHHH----HHHHHHHHcCCeEEEEECCCCCHHH------------HHHHHHh---CC
Confidence 678899999999985421 22333 2234577899999887776 44444 3333321 12
Q ss_pred CeEEEEcccCccC-CCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 160 NIVLAYEPVWAIG-TGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 160 ~~iIAYEPvWAIG-tG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+ .|=.. .-| ||... -++++.+.++.||+. .+.||..|=+|+......-+. .+.||+.||++-+
T Consensus 165 gF--iY~vs-~~GvTG~~~~~~~~l~~~i~~ik~~----------~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v 230 (259)
T PF00290_consen 165 GF--IYLVS-RMGVTGSRTELPDELKEFIKRIKKH----------TDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFV 230 (259)
T ss_dssp SE--EEEES-SSSSSSTTSSCHHHHHHHHHHHHHT----------TSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHH
T ss_pred cE--EEeec-cCCCCCCcccchHHHHHHHHHHHhh----------cCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHH
Confidence 22 23211 133 56543 477888888888875 258999999998865444444 8999999999844
Q ss_pred c
Q 025540 238 K 238 (251)
Q Consensus 238 ~ 238 (251)
+
T Consensus 231 ~ 231 (259)
T PF00290_consen 231 K 231 (259)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.12 E-value=0.15 Score=44.49 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=29.3
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++|+++||+|..-...+-+...++||++||++.++
T Consensus 189 ~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 189 NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 48999999999876665566689999999998765
No 53
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.82 E-value=0.35 Score=42.62 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=35.0
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc--hHHHHHHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~~ 248 (251)
++|+++.|+|+ ++.+.+++...++||+++|++-++ -++.++.+.+
T Consensus 193 ~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHH
Confidence 48999999996 678888888889999999999776 2455544433
No 54
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=94.81 E-value=0.045 Score=48.92 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 172 GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
|+|.+.+++.++++ |+.+ +..|++|||+|+.....+-+...++||+.||++-.+
T Consensus 165 ~~g~~~~~e~I~~v----~~~~---------~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 165 GAGDPVPPEMVKAV----KKAL---------DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred CCCCCCCHHHHHHH----HHhc---------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 55676777776644 4321 113899999999984444444468999999999887
No 55
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.77 E-value=1.4 Score=39.37 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=86.9
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.++|++++.+ |.|- ++..+.+-++...++|+++=+-+.=.. .. +.+..+|+.++ .=
T Consensus 75 i~~~~~aGad~it~-H~Ea------~~~~~~~~i~~Ik~~G~kaGlalnP~T-------~~----~~l~~~l~~vD--~V 134 (229)
T PRK09722 75 IDQLADAGADFITL-HPET------INGQAFRLIDEIRRAGMKVGLVLNPET-------PV----ESIKYYIHLLD--KI 134 (229)
T ss_pred HHHHHHcCCCEEEE-CccC------CcchHHHHHHHHHHcCCCEEEEeCCCC-------CH----HHHHHHHHhcC--EE
Confidence 46789999998866 6663 123455677888899999766555321 11 23345555432 12
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC-c-
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-K- 238 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl-~- 238 (251)
++..-||=. +|+.-.|+-.+++- .+|+.+.+. +-++.|.-=|+||.+|+.++. ..++|.+.+|++++ +
T Consensus 135 LvMsV~PGf---~GQ~fi~~~l~KI~-~lr~~~~~~-----~~~~~IeVDGGI~~~~i~~~~-~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 135 TVMTVDPGF---AGQPFIPEMLDKIA-ELKALRERN-----GLEYLIEVDGSCNQKTYEKLM-EAGADVFIVGTSGLFNL 204 (229)
T ss_pred EEEEEcCCC---cchhccHHHHHHHH-HHHHHHHhc-----CCCeEEEEECCCCHHHHHHHH-HcCCCEEEEChHHHcCC
Confidence 568889932 46666555555443 345554331 335789999999999997654 58999999997634 3
Q ss_pred -hHHHHHHHHH
Q 025540 239 -PEFIDIIKSA 248 (251)
Q Consensus 239 -~~F~~Ii~~~ 248 (251)
+++.+.++.+
T Consensus 205 ~~d~~~~i~~l 215 (229)
T PRK09722 205 DEDIDEAWDIM 215 (229)
T ss_pred CCCHHHHHHHH
Confidence 3455544443
No 56
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.77 E-value=0.89 Score=40.32 Aligned_cols=137 Identities=17% Similarity=0.286 Sum_probs=87.7
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.+.|++++.+ |.|- ...+.+-++...++|+++=+-+.=.. .. +.+...++.++ .=
T Consensus 78 i~~~~~~gad~I~~-H~Ea-------~~~~~~~l~~Ir~~g~k~GlalnP~T-------~~----~~i~~~l~~vD--~V 136 (223)
T PRK08745 78 VPDFADAGATTISF-HPEA-------SRHVHRTIQLIKSHGCQAGLVLNPAT-------PV----DILDWVLPELD--LV 136 (223)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHCCCceeEEeCCCC-------CH----HHHHHHHhhcC--EE
Confidence 57889999997755 7773 23355677888899998766554321 11 23344455432 12
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++..-||=. .|+.--++..+++. .+|+.+.+. +.++.|---|+||.+|+..+ ...++|.+.+|++-.+ +
T Consensus 137 lvMtV~PGf---~GQ~fi~~~l~KI~-~l~~~~~~~-----~~~~~IeVDGGI~~eti~~l-~~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 137 LVMSVNPGF---GGQAFIPSALDKLR-AIRKKIDAL-----GKPIRLEIDGGVKADNIGAI-AAAGADTFVAGSAIFNAP 206 (223)
T ss_pred EEEEECCCC---CCccccHHHHHHHH-HHHHHHHhc-----CCCeeEEEECCCCHHHHHHH-HHcCCCEEEEChhhhCCC
Confidence 568899933 46665555544333 335544332 23588999999999999754 5589999999998665 5
Q ss_pred HHHHHHHHH
Q 025540 240 EFIDIIKSA 248 (251)
Q Consensus 240 ~F~~Ii~~~ 248 (251)
++.+.++.+
T Consensus 207 d~~~~~~~l 215 (223)
T PRK08745 207 DYAQVIAQM 215 (223)
T ss_pred CHHHHHHHH
Confidence 555555544
No 57
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.68 E-value=0.66 Score=38.50 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=35.5
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
++||+--|+++++|+.+++. .++||+.+|++-++ ++..+.++.+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~-~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA-AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH-cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 38899999999999988886 68999999999876 5655555543
No 58
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.68 E-value=1.6 Score=38.12 Aligned_cols=200 Identities=16% Similarity=0.115 Sum_probs=96.7
Q ss_pred ccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-C-CceEe---eecccccCCcccccc-ccHHHHH
Q 025540 12 KCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-P-GFHVA---AQNCWVKKGGAFTGE-ISAEMLV 85 (251)
Q Consensus 12 Kmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~-~i~vg---AQn~~~~~~Ga~TGe-iS~~mLk 85 (251)
|-+.+.++..++++...+. +++-+..+| .++..+...+. + ++.+. ...+... .-.++-- -+.+...
T Consensus 15 ~p~~~~~d~~~~~~~~~~~------g~~av~v~~-~~~~~~~~~~~~~~~~i~~~~~~~~i~~p-~~~~~~~~~~v~~a~ 86 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEG------GADAVALTK-GIARAYGREYAGDIPLIVKLNGSTSLSPK-DDNDKVLVASVEDAV 86 (235)
T ss_pred CCCccccCHHHHHHHHHhc------CCCEEEeCh-HHHHhcccccCCCCcEEEEECCCCCCCCC-CCCchhhhcCHHHHH
Confidence 6677777888888766552 244444333 33333333332 1 22211 1222211 1112211 2477888
Q ss_pred hCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE--Ee-CCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeE
Q 025540 86 NLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA--CV-GETLEQREAGSTMDVVAAQTKAIADRVSSWSNIV 162 (251)
Q Consensus 86 d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl--Ci-GE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~i 162 (251)
+.|++.+.+-=.+......+.-+.+.+=.+.|.+.|+..|+ +. |..+.+ ..+.+.+.+-.+...+ ....+
T Consensus 87 ~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~---~~~~~~i~~~~~~a~~----~GaD~ 159 (235)
T cd00958 87 RLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN---EKDPDLIAYAARIGAE----LGADI 159 (235)
T ss_pred HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC---ccCHHHHHHHHHHHHH----HCCCE
Confidence 99999884422222222234444555666667789999877 11 111100 0122222221222222 12233
Q ss_pred EEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-------ccHHHHhcCCCCCEEEEcCc
Q 025540 163 LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-------ANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 163 IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-------~n~~~l~~~~~vDG~LVG~a 235 (251)
|..-+ |+ +++.. ++.... -.+||+-=|+++. +|+.+++ +.+++|+++|++
T Consensus 160 Ik~~~-----~~---~~~~~-------~~i~~~-------~~~pvv~~GG~~~~~~~~~l~~~~~~~-~~Ga~gv~vg~~ 216 (235)
T cd00958 160 VKTKY-----TG---DAESF-------KEVVEG-------CPVPVVIAGGPKKDSEEEFLKMVYDAM-EAGAAGVAVGRN 216 (235)
T ss_pred EEecC-----CC---CHHHH-------HHHHhc-------CCCCEEEeCCCCCCCHHHHHHHHHHHH-HcCCcEEEechh
Confidence 43322 11 33333 333221 1256666344433 5565555 589999999999
Q ss_pred cCc-hHHHHHHHHHh
Q 025540 236 SLK-PEFIDIIKSAE 249 (251)
Q Consensus 236 sl~-~~F~~Ii~~~~ 249 (251)
.++ ++..+.++.++
T Consensus 217 i~~~~dp~~~~~~~~ 231 (235)
T cd00958 217 IFQRPDPVAMLRAIS 231 (235)
T ss_pred hhcCCCHHHHHHHHH
Confidence 998 77766666543
No 59
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.51 E-value=0.28 Score=44.08 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=44.4
Q ss_pred EEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccC
Q 025540 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 162 iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl 237 (251)
-|.|-.+=.-||..-++.+.++++. +. .++||+++|+|..- ...+++...++||+++|+|-+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~----~~----------~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFR----NA----------LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHH----hh----------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 3556677777887777666655432 21 24899999999985 555555578999999999865
No 60
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.39 E-value=1.6 Score=39.88 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=71.7
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiG-E~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.+.+++.|++.+||=-- -+.|.+ .....|.++||.+|+=+- .|.++| + +.+.+. .+
T Consensus 115 ~~~~~~~GvdGlivpDL----P~ee~~----~~~~~~~~~gi~~I~lvaPtt~~~r--------l----~~i~~~---a~ 171 (265)
T COG0159 115 LRRAKEAGVDGLLVPDL----PPEESD----ELLKAAEKHGIDPIFLVAPTTPDER--------L----KKIAEA---AS 171 (265)
T ss_pred HHHHHHcCCCEEEeCCC----ChHHHH----HHHHHHHHcCCcEEEEeCCCCCHHH--------H----HHHHHh---CC
Confidence 56888888888887432 122333 466677789999876544 333333 2 222221 12
Q ss_pred CeE--EEEcccCccCCCCCCC-HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 160 NIV--LAYEPVWAIGTGKVAT-PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 160 ~~i--IAYEPvWAIGtG~~a~-~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
-++ +..=++ ||.... .+.+.+.++.||+. .++||++|=+|+...-..-+..- .||+.||+|-
T Consensus 172 GFiY~vs~~Gv----TG~~~~~~~~~~~~v~~vr~~----------~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 172 GFIYYVSRMGV----TGARNPVSADVKELVKRVRKY----------TDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred CcEEEEecccc----cCCCcccchhHHHHHHHHHHh----------cCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 222 222222 454432 44478888888876 25899999888765554444444 9999999984
Q ss_pred C
Q 025540 237 L 237 (251)
Q Consensus 237 l 237 (251)
.
T Consensus 237 V 237 (265)
T COG0159 237 V 237 (265)
T ss_pred H
Confidence 4
No 61
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.26 E-value=0.073 Score=47.19 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHH
Q 025540 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDI 244 (251)
Q Consensus 172 GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~I 244 (251)
|+|....++.++ .+|+.+ .++|++|||+++.....+-+...+.|++.||++..+ ++ |.++
T Consensus 156 ~SG~~~~~e~I~----~v~~~~---------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 156 YSGAYGPPEVVR----AVKKVL---------GDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred CCCCcCCHHHHH----HHHHhc---------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 667765665555 444431 148999999997766666677789999999999988 44 4444
No 62
>PRK14057 epimerase; Provisional
Probab=94.16 E-value=1 Score=40.91 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=83.5
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCC-----------eEEEEeCCcHHHHhcCCcHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-----------KVIACVGETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl-----------~pIlCiGE~~~~r~~g~~~~~~~~Ql~ 149 (251)
.+.+.++|++++.+ |.|- ...+.+-++...++|. -..+|-+-+.+ .++
T Consensus 91 i~~~~~aGad~It~-H~Ea-------~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e-------------~i~ 149 (254)
T PRK14057 91 AQACVKAGAHCITL-QAEG-------DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD-------------VII 149 (254)
T ss_pred HHHHHHhCCCEEEE-eecc-------ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH-------------HHH
Confidence 47889999998755 7773 2234456667777775 24455554442 233
Q ss_pred HHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCE
Q 025540 150 AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 229 (251)
Q Consensus 150 ~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG 229 (251)
..|+.++ .=++..-||=.+ |+.--++-.+++. .+|+.+.+. +-++.|.-=|+||.+|+.++. ..++|.
T Consensus 150 ~~l~~vD--~VLvMtV~PGfg---GQ~Fi~~~l~KI~-~lr~~~~~~-----~~~~~IeVDGGI~~~ti~~l~-~aGad~ 217 (254)
T PRK14057 150 PILSDVE--VIQLLAVNPGYG---SKMRSSDLHERVA-QLLCLLGDK-----REGKIIVIDGSLTQDQLPSLI-AQGIDR 217 (254)
T ss_pred HHHHhCC--EEEEEEECCCCC---chhccHHHHHHHH-HHHHHHHhc-----CCCceEEEECCCCHHHHHHHH-HCCCCE
Confidence 5555432 125688999543 5655444444333 234444321 335889999999999997654 589999
Q ss_pred EEEcCccCc-hHHHHHHHHH
Q 025540 230 FLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 230 ~LVG~asl~-~~F~~Ii~~~ 248 (251)
+.+|++-.+ +++.+.++.+
T Consensus 218 ~V~GSalF~~~d~~~~i~~l 237 (254)
T PRK14057 218 VVSGSALFRDDRLVENTRSW 237 (254)
T ss_pred EEEChHhhCCCCHHHHHHHH
Confidence 988887665 5565555543
No 63
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.88 E-value=0.16 Score=45.10 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHH-------HhcCCcHHHHHHHHHHHHh
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ-------REAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~-------r~~g~~~~~~~~Ql~~~l~ 153 (251)
++.+-++||+.|++|=+=- +|..+-+++... .|=++++.+.-.... .+.+.+...+.+++...
T Consensus 91 v~~~l~~Ga~kvvigt~a~------~~~~~l~~~~~~--fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-- 160 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKGI------QDTDWLKEMAHT--FPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI-- 160 (234)
T ss_pred HHHHHHCCCCEEEECchHh------cCHHHHHHHHHH--cCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc--
Confidence 5667789999999996532 122233333322 244577777632110 01122222223333221
Q ss_pred ccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 154 ~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
. ... |-|-.+---||..-+..+.++++.+. .++||+++|+|...+...-+...++||++||
T Consensus 161 --g-~~~--ii~tdi~~dGt~~G~~~~li~~l~~~--------------~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 161 --P-LGG--IIYTDIAKDGKMSGPNFELTGQLVKA--------------TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred --C-CCE--EEEecccCcCCCCccCHHHHHHHHHh--------------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 0 222 45777777888888877766654321 2489999999998665555556899999999
Q ss_pred CccCchHH
Q 025540 234 GASLKPEF 241 (251)
Q Consensus 234 ~asl~~~F 241 (251)
+|-++-+|
T Consensus 222 ~a~~~~~~ 229 (234)
T PRK13587 222 KAAHQASF 229 (234)
T ss_pred HHHHhChh
Confidence 98776444
No 64
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.79 E-value=0.16 Score=46.10 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=96.9
Q ss_pred ccCCccccccc---cHHHHHhCC-------CCEE---EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHH
Q 025540 69 VKKGGAFTGEI---SAEMLVNLE-------IPWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQR 135 (251)
Q Consensus 69 ~~~~Ga~TGei---S~~mLkd~G-------~~~v---iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r 135 (251)
++..|+||-|= .++|-+|++ .+|| ++|. -|.++-+.-+++ +-.+...+.|+++.-=+-...
T Consensus 75 PNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D--~~~LlPD~~etl-~Aae~Lv~eGF~VlPY~~~D~--- 148 (267)
T CHL00162 75 PNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISD--PKYLLPDPIGTL-KAAEFLVKKGFTVLPYINADP--- 148 (267)
T ss_pred CcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCC--CcccCCChHHHH-HHHHHHHHCCCEEeecCCCCH---
Confidence 67889999884 456668876 5666 4444 455565555444 556777799999875555443
Q ss_pred hcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccC--ccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 136 EAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVW--AIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 136 ~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvW--AIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
++.++|.. +.. . |--| | -||||+-. +|..++ .|++ ..++||+.|++
T Consensus 149 -------v~a~rLed----~Gc--~---aVMP-lgsPIGSg~Gl~n~~~l~----~i~e----------~~~vpVivdAG 197 (267)
T CHL00162 149 -------MLAKHLED----IGC--A---TVMP-LGSPIGSGQGLQNLLNLQ----IIIE----------NAKIPVIIDAG 197 (267)
T ss_pred -------HHHHHHHH----cCC--e---EEee-ccCcccCCCCCCCHHHHH----HHHH----------cCCCcEEEeCC
Confidence 33444433 221 1 1222 3 38999987 565544 4544 23599999999
Q ss_pred CCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 213 VNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 213 V~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
+.....+..+-+.+.||+|+.++-.+ ++..++.+.+
T Consensus 198 Igt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~ 234 (267)
T CHL00162 198 IGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAM 234 (267)
T ss_pred cCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHH
Confidence 99999999999999999999999888 5656655543
No 65
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.76 E-value=0.053 Score=48.70 Aligned_cols=47 Identities=28% Similarity=0.377 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
||.++++++++.+.+. -.+|+|-|-+|+++|+.++++. .||+.||..
T Consensus 188 TG~~~d~~el~~a~~~--------------~~~pvlvGSGv~~eN~~~~l~~--adG~IvgT~ 234 (263)
T COG0434 188 TGSPPDLEELKLAKEA--------------VDTPVLVGSGVNPENIEELLKI--ADGVIVGTS 234 (263)
T ss_pred CCCCCCHHHHHHHHhc--------------cCCCEEEecCCCHHHHHHHHHH--cCceEEEEE
Confidence 7888899988743322 1389999999999999999986 899999864
No 66
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.71 E-value=0.29 Score=44.91 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=29.0
Q ss_pred cceEE--EccCC-CcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~il--YGGSV-~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||+ --|+| +|+|+.+++. .++||++||++-.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~ 230 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 230 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhc
Confidence 37886 67777 9999988886 79999999999875
No 67
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=93.45 E-value=1.2 Score=39.49 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=47.4
Q ss_pred EEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHH-HHh--cCCCCCEEEEcCccCc-
Q 025540 163 LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCK-ELA--AQPDVDGFLVGGASLK- 238 (251)
Q Consensus 163 IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~-~l~--~~~~vDG~LVG~asl~- 238 (251)
|.|=++-.-|+.+.+.-+.+.++.+ . ..+||+++|.|..-+.. ++. ...++||+++|+|.++
T Consensus 163 iiv~~~~~~g~~~G~d~~~i~~i~~----~----------~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 163 YVVTDVTKDGTLTGPNLELLREVCA----R----------TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred EEEEeecCCCCccCCCHHHHHHHHh----h----------CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 4556777888887766555554432 1 24899999999876554 443 2469999999999987
Q ss_pred h-HHHHHHH
Q 025540 239 P-EFIDIIK 246 (251)
Q Consensus 239 ~-~F~~Ii~ 246 (251)
. ++.+.++
T Consensus 229 ~~~~~~~~~ 237 (241)
T PRK14024 229 AFTLPEALA 237 (241)
T ss_pred CCCHHHHHH
Confidence 2 4444443
No 68
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.34 E-value=1.1 Score=39.10 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=26.2
Q ss_pred cceEEEccCCCcc-cHHHHhcCCCCCEEEEcCcc
Q 025540 204 ATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 204 ~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~as 236 (251)
++||+++|+|+.- .+.+++...++||+.||.|-
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 4899999999854 44444777899999999873
No 69
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=93.34 E-value=0.2 Score=42.61 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+|++++++++.+|.. ..++.|.--|++|++|+.+++. .+||.+-+|+.-.+
T Consensus 110 ~~~~~~~~v~~l~~~---------~~~v~ie~SGGI~~~ni~~ya~-~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 110 SPEDLKEAVEELREL---------NPRVKIEASGGITLENIAEYAK-TGVDVISVGSLTHS 160 (169)
T ss_dssp CHHHHHHHHHHHHHH---------TTTSEEEEESSSSTTTHHHHHH-TT-SEEEECHHHHS
T ss_pred CHHHHHHHHHHHhhc---------CCcEEEEEECCCCHHHHHHHHh-cCCCEEEcChhhcC
Confidence 899999999999765 4559999999999999999985 67999999986444
No 70
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=93.26 E-value=0.39 Score=44.16 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=28.1
Q ss_pred cceEE--EccCC-CcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~il--YGGSV-~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||+ -=|+| +|+|+..++. .++||++||++-.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 37887 55566 9999988776 79999999999875
No 71
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=92.74 E-value=2.3 Score=38.26 Aligned_cols=134 Identities=22% Similarity=0.202 Sum_probs=74.5
Q ss_pred HHHHHhCCCCEEEeC---chhhc-ccc-ccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILG---HSERR-LIL-NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 81 ~~mLkd~G~~~viiG---HSERR-~~f-~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
.+.|+++|++.+.+| +.|-. +.. +.+-+..-+-++.+.++|+.+ |+-.||+.++.. +-+..
T Consensus 126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~---------~~~~~- 195 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI---------GLALA- 195 (296)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH---------HHHHH-
Confidence 566779999998775 32222 222 235556667788999999985 455677765442 11111
Q ss_pred HhccCCCCCe-EEEEcccCccCCC----CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC-CCcccHHHH-hcC
Q 025540 152 ADRVSSWSNI-VLAYEPVWAIGTG----KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS-VNGANCKEL-AAQ 224 (251)
Q Consensus 152 l~~i~~~~~~-iIAYEPvWAIGtG----~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS-V~~~n~~~l-~~~ 224 (251)
+..+. ...+ +-.+=|. =||. .++++++.-++++..|..+.. ..++ +-||. +.-.+.... +-.
T Consensus 196 l~~l~-~~~i~l~~l~p~--~gT~l~~~~~~s~~~~~~~ia~~r~~lp~-------~~i~-~~~~~~~~~~~~~~~~~l~ 264 (296)
T TIGR00433 196 LANLP-PESVPINFLVKI--KGTPLADNKELSADDALKTIALARIIMPK-------AEIR-LAGGREVNMRELQQAMCFM 264 (296)
T ss_pred HHhCC-CCEEEeeeeEEc--CCCccCCCCCCCHHHHHHHHHHHHHHCCc-------ceEE-EeCCcchhhhhhHHHHHHH
Confidence 22221 1111 1112232 1442 245777888888888877532 2243 34444 343444333 667
Q ss_pred CCCCEEEEcCc
Q 025540 225 PDVDGFLVGGA 235 (251)
Q Consensus 225 ~~vDG~LVG~a 235 (251)
.++|++++|+-
T Consensus 265 ~G~n~i~~g~~ 275 (296)
T TIGR00433 265 AGANSIFVGDY 275 (296)
T ss_pred hcCceEEEcCc
Confidence 78999999874
No 72
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.71 E-value=0.15 Score=47.35 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.3
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hH-HHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FID 243 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~ 243 (251)
++||++-|.| +++.+.+++...++||+.||++.+. |. |.+
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~ 236 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRV 236 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHH
Confidence 4899999999 7788888888999999999999997 65 443
No 73
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.66 E-value=0.18 Score=44.70 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=35.1
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCchHHH-HHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFI-DIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~F~-~Ii~ 246 (251)
.+||.+||+|+.-...+-+...++|++.||.+.++++|. ++++
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~ 116 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTS 116 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHH
Confidence 489999999999888777777899999999999985554 3443
No 74
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.63 E-value=0.88 Score=40.96 Aligned_cols=154 Identities=14% Similarity=0.209 Sum_probs=89.7
Q ss_pred ccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE
Q 025540 47 VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126 (251)
Q Consensus 47 ~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl 126 (251)
.++.++.+.+.-++++|. ----.=.++.|.++|+++|++|-.=- +.-+. =-+.+.+.|=.+++
T Consensus 65 ~~i~~i~~~~~~~vQvGG---------GIRs~~~v~~ll~~G~~rViiGt~av-----~~p~~---v~~~~~~~g~rivv 127 (241)
T COG0106 65 EAIKEILEATDVPVQVGG---------GIRSLEDVEALLDAGVARVIIGTAAV-----KNPDL---VKELCEEYGDRIVV 127 (241)
T ss_pred HHHHHHHHhCCCCEEeeC---------CcCCHHHHHHHHHCCCCEEEEeccee-----cCHHH---HHHHHHHcCCcEEE
Confidence 344444444434666663 11122357889999999999997652 22222 22344567766666
Q ss_pred EeCCcHHH-------HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 025540 127 CVGETLEQ-------REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSP 199 (251)
Q Consensus 127 CiGE~~~~-------r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~ 199 (251)
-+.-.... -.++.+...+.+++... . .+.++ |-=+-==||-.-+..+-..+.++..
T Consensus 128 ~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~----g-~~~ii--~TdI~~DGtl~G~n~~l~~~l~~~~---------- 190 (241)
T COG0106 128 ALDARDGKVAVSGWQEDSGVELEELAKRLEEV----G-LAHIL--YTDISRDGTLSGPNVDLVKELAEAV---------- 190 (241)
T ss_pred EEEccCCccccccccccccCCHHHHHHHHHhc----C-CCeEE--EEecccccccCCCCHHHHHHHHHHh----------
Confidence 55422210 11222333444444332 1 23333 3222222555555666655555443
Q ss_pred cccCcceEEEccCCCcccHHHHhcCC-CCCEEEEcCccCc
Q 025540 200 EIAAATRIIYGGSVNGANCKELAAQP-DVDGFLVGGASLK 238 (251)
Q Consensus 200 ~~~~~i~ilYGGSV~~~n~~~l~~~~-~vDG~LVG~asl~ 238 (251)
++|++|-|+|+.-++-+.+... +++|+.||+|-+.
T Consensus 191 ----~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 191 ----DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred ----CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 3899999999999999999999 6999999999776
No 75
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.50 E-value=1.4 Score=38.12 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=33.4
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++||++.|+| +++.+.+++...++||+.+|++.+. +.|.
T Consensus 183 ~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~ 223 (231)
T cd02801 183 SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLF 223 (231)
T ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHH
Confidence 5899999999 6788888888779999999999997 6543
No 76
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.36 E-value=0.49 Score=40.10 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=50.3
Q ss_pred CeEEEEcccCccCCCCCC----CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 160 NIVLAYEPVWAIGTGKVA----TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a----~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-.++..-|+..-+|-... .++.++++++.. .++||+-.|+++++|+.+++ ..++||+-+|++
T Consensus 117 ~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-------------~~~pv~a~GGI~~~~~~~~~-~~G~~gva~~~~ 182 (196)
T TIGR00693 117 ADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-------------IDIPIVAIGGITLENAAEVL-AAGADGVAVVSA 182 (196)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-------------CCCCEEEECCcCHHHHHHHH-HcCCCEEEEhHH
Confidence 456788898877764432 234333322211 23889999999999999887 469999999999
Q ss_pred cCc-hHHHHHHH
Q 025540 236 SLK-PEFIDIIK 246 (251)
Q Consensus 236 sl~-~~F~~Ii~ 246 (251)
-++ ++..+.++
T Consensus 183 i~~~~dp~~~~~ 194 (196)
T TIGR00693 183 IMQAADPKAAAK 194 (196)
T ss_pred hhCCCCHHHHHH
Confidence 887 55544443
No 77
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=92.34 E-value=0.13 Score=45.52 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=70.3
Q ss_pred ccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCC-eEEEEeCCcHH--------HHhcCCcHHHHH
Q 025540 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-KVIACVGETLE--------QREAGSTMDVVA 145 (251)
Q Consensus 75 ~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl-~pIlCiGE~~~--------~r~~g~~~~~~~ 145 (251)
..-.=.++.|-+.|++.|++|=.=- ++-+.+.+-.+. .|= ..++++.=... ....+.+...+.
T Consensus 82 Irs~ed~~~ll~~Ga~~Vvigt~~~-----~~~~~l~~~~~~---~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~ 153 (229)
T PF00977_consen 82 IRSIEDAERLLDAGADRVVIGTEAL-----EDPELLEELAER---YGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFA 153 (229)
T ss_dssp E-SHHHHHHHHHTT-SEEEESHHHH-----HCCHHHHHHHHH---HGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHH
T ss_pred cCcHHHHHHHHHhCCCEEEeChHHh-----hchhHHHHHHHH---cCcccEEEEEEeeeceEEEecCccccCCcCHHHHH
Confidence 3333457799999999999996522 222233322222 122 33333331110 001123333333
Q ss_pred HHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCC
Q 025540 146 AQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQP 225 (251)
Q Consensus 146 ~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~ 225 (251)
+++... . ...++ |=-+-.-||+.-++.+-+ +.+++.. ++|++|+|+|+.-..-..+...
T Consensus 154 ~~~~~~----g-~~~ii--~tdi~~dGt~~G~d~~~~----~~l~~~~----------~~~viasGGv~~~~Dl~~l~~~ 212 (229)
T PF00977_consen 154 KRLEEL----G-AGEII--LTDIDRDGTMQGPDLELL----KQLAEAV----------NIPVIASGGVRSLEDLRELKKA 212 (229)
T ss_dssp HHHHHT----T--SEEE--EEETTTTTTSSS--HHHH----HHHHHHH----------SSEEEEESS--SHHHHHHHHHT
T ss_pred HHHHhc----C-CcEEE--EeeccccCCcCCCCHHHH----HHHHHHc----------CCCEEEecCCCCHHHHHHHHHC
Confidence 443331 1 23443 455667788887765443 3444432 4899999999775555556689
Q ss_pred CCCEEEEcCccC
Q 025540 226 DVDGFLVGGASL 237 (251)
Q Consensus 226 ~vDG~LVG~asl 237 (251)
++||+++|.|-+
T Consensus 213 G~~gvivg~al~ 224 (229)
T PF00977_consen 213 GIDGVIVGSALH 224 (229)
T ss_dssp TECEEEESHHHH
T ss_pred CCcEEEEehHhh
Confidence 999999998743
No 78
>PRK08508 biotin synthase; Provisional
Probab=92.31 E-value=4.5 Score=36.69 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=86.7
Q ss_pred cccccHHHH---HhCCCCEEEeCchhhcccccc-----ChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHH
Q 025540 76 TGEISAEML---VNLEIPWVILGHSERRLILNE-----LNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDV 143 (251)
Q Consensus 76 TGeiS~~mL---kd~G~~~viiGHSERR~~f~E-----td~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~ 143 (251)
.|..+.+.| ++.|++.+-+|.-=++.+|.. +-+.+-+-++.|.+.|+.+ |+=.||+.++|.
T Consensus 97 ~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~------- 169 (279)
T PRK08508 97 NGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRI------- 169 (279)
T ss_pred CCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHH-------
Confidence 566666665 556999888875555555533 3355556667799999976 777889888772
Q ss_pred HHHHHHHHHhccCCCCCeEEE---EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC--CcccH
Q 025540 144 VAAQTKAIADRVSSWSNIVLA---YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV--NGANC 218 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~iIA---YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV--~~~n~ 218 (251)
++-..+..+.. +.+-+- .-|-+-.+ ..+++++++-.+++..|-.+ ++..|-+.|+- ..+..
T Consensus 170 ---~~l~~lr~L~~-~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~l---------p~~~i~~~~gr~~~~~~~ 235 (279)
T PRK08508 170 ---SFLKSLASLSP-HSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEAL---------PNARLMVAGGREVVFGER 235 (279)
T ss_pred ---HHHHHHHcCCC-CEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHC---------CCceeeecCChhhhchhh
Confidence 11122233321 111122 22222222 23468999999999888764 23556666654 33445
Q ss_pred HHHhcCCCCCEEEEcCccCc
Q 025540 219 KELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 219 ~~l~~~~~vDG~LVG~asl~ 238 (251)
..++-..++||+++|+. |.
T Consensus 236 ~~~~~~~g~n~~~~g~~-lt 254 (279)
T PRK08508 236 QYEIFEAGANAIVIGDY-LT 254 (279)
T ss_pred HHHHHhcCCcceeecCc-cc
Confidence 66777789999999985 54
No 79
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.26 E-value=3 Score=37.82 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=78.9
Q ss_pred ccHHHHHhCCCCEEEeCch----hhc-cccccChHHHHHHHHHHHHC-CCeEEEEeCCcHHHHhcCCcHHHHHHHHHH-H
Q 025540 79 ISAEMLVNLEIPWVILGHS----ERR-LILNELNEFVGDKVAYALSQ-GLKVIACVGETLEQREAGSTMDVVAAQTKA-I 151 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHS----ERR-~~f~Etd~~i~~Kv~~al~~-gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~-~ 151 (251)
-.+..+++.|++++.++-| .+| ..++.+-+.+.+-+++..+. ++...+=++-+.+ +..+ +.+.+.. .
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~-----~~~~-~a~~~~~~G 179 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT-----DIVE-IARAAEEAG 179 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch-----hHHH-HHHHHHHcC
Confidence 3677889999999999644 332 33555556666666666665 5443433553221 1111 1122221 1
Q ss_pred HhccCC---CCCeEEEE---cccCccC----CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHHH
Q 025540 152 ADRVSS---WSNIVLAY---EPVWAIG----TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCKE 220 (251)
Q Consensus 152 l~~i~~---~~~~iIAY---EPvWAIG----tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~~ 220 (251)
.+.+.- .....+-. +|+..-+ +|.+..| ..-+....+|+. -++||+..|+| +++++.+
T Consensus 180 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~-~~~~~i~~i~~~----------~~ipii~~GGI~~~~da~~ 248 (296)
T cd04740 180 ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKP-IALRMVYQVYKA----------VEIPIIGVGGIASGEDALE 248 (296)
T ss_pred CCEEEEECCCcccccccccCceeecCCcceecCcccch-HHHHHHHHHHHh----------cCCCEEEECCCCCHHHHHH
Confidence 111110 00000111 2322111 2222222 222333344432 14899999999 5788888
Q ss_pred HhcCCCCCEEEEcCccCc-hH-HHHHHHH
Q 025540 221 LAAQPDVDGFLVGGASLK-PE-FIDIIKS 247 (251)
Q Consensus 221 l~~~~~vDG~LVG~asl~-~~-F~~Ii~~ 247 (251)
++. .+.|++.+|++.+. +. |.+|.+.
T Consensus 249 ~l~-~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 249 FLM-AGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHH-cCCCEEEEchhhhcChHHHHHHHHH
Confidence 886 78999999999987 54 5555444
No 80
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=92.26 E-value=0.15 Score=44.94 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=43.7
Q ss_pred EEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 164 AYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
-|==+-.-||+.-++.+.++++.+. ..+|+++||+|+.-....-+...++||++||+|-++
T Consensus 158 i~tdI~~dGt~~G~d~eli~~i~~~--------------~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 158 IVLDIHSVGTMKGPNLELLTKTLEL--------------SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred EEEECCccccCCCCCHHHHHHHHhh--------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 3445666688887776665544322 138999999999876666666689999999998543
No 81
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.15 E-value=0.39 Score=42.02 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=48.1
Q ss_pred EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HH
Q 025540 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FI 242 (251)
Q Consensus 165 YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~ 242 (251)
|=++=..|++.....+.+++ |++. -.+|++|||.++.-+..+-+...++|++.+|++.++ ++ +.
T Consensus 49 i~dl~~~~~~~~~n~~~~~~----i~~~----------~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~ 114 (232)
T TIGR03572 49 VLDIDASKRGREPLFELISN----LAEE----------CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIE 114 (232)
T ss_pred EEeCCCcccCCCCCHHHHHH----HHHh----------CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHH
Confidence 34566777777666554443 3322 137999999999877766666679999999999998 54 55
Q ss_pred HHHHH
Q 025540 243 DIIKS 247 (251)
Q Consensus 243 ~Ii~~ 247 (251)
++++.
T Consensus 115 ~~~~~ 119 (232)
T TIGR03572 115 EAARR 119 (232)
T ss_pred HHHHH
Confidence 55554
No 82
>PRK06256 biotin synthase; Validated
Probab=91.91 E-value=4.3 Score=37.50 Aligned_cols=136 Identities=20% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHHhCCCCEEEeCc--hh-hcccc--ccChHHHHHHHHHHHHCCCeEEE----EeCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGH--SE-RRLIL--NELNEFVGDKVAYALSQGLKVIA----CVGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 81 ~~mLkd~G~~~viiGH--SE-RR~~f--~Etd~~i~~Kv~~al~~gl~pIl----CiGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
...|+++|++.+.+|- |+ .+..+ +.+-+..-+-++.+.++|+.+.. =.||+.+++. + +...
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~---------~-~~~~ 224 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRV---------E-HAFF 224 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHH---------H-HHHH
Confidence 5567799999987742 22 11112 23556677788899999986421 1477776653 1 1112
Q ss_pred HhccCCCCCeEE-EEcc--cCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceE-EEccC-CCcccHHHHhcCCC
Q 025540 152 ADRVSSWSNIVL-AYEP--VWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRI-IYGGS-VNGANCKELAAQPD 226 (251)
Q Consensus 152 l~~i~~~~~~iI-AYEP--vWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~i-lYGGS-V~~~n~~~l~~~~~ 226 (251)
+..+. ...+.+ -+=| -.-...-.+++++++-++++..|-.+ ++..| +-||- +.-.+...+.- .+
T Consensus 225 l~~l~-~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~---------p~~~I~~~~gr~~~~~~~~~~~~-~g 293 (336)
T PRK06256 225 LKELD-ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLIN---------PDKEIRIAGGREVNLRSLQPLGL-GG 293 (336)
T ss_pred HHhCC-CCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCeeEecCchhhhchhhHHHHh-cc
Confidence 22222 111111 1222 11111123468888888888888664 22344 55776 55566655555 69
Q ss_pred CCEEEEcCccCc
Q 025540 227 VDGFLVGGASLK 238 (251)
Q Consensus 227 vDG~LVG~asl~ 238 (251)
++|+++|+- |.
T Consensus 294 ~~~~~~g~~-lt 304 (336)
T PRK06256 294 ANSVIVGNY-LT 304 (336)
T ss_pred CceeeECCc-cc
Confidence 999999987 43
No 83
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.88 E-value=0.42 Score=42.16 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=34.7
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~~ 248 (251)
++||++||+|+.-...+-+...++|++.+|++.+. + -|.+|++.+
T Consensus 71 ~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 71 FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 38999999999754444444468999999999987 4 577777765
No 84
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.76 E-value=4.8 Score=36.87 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=35.1
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
++||+.+|+++ ++++.+++...++|.+.+|++.+. |+|..
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 48999999997 899999998889999999999987 77643
No 85
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=91.39 E-value=0.32 Score=42.80 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=48.3
Q ss_pred ccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 167 PVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 167 PvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
|+-|.||-+-+.+|-+..+.... +-|++-||+|......+++...+|+|+|||.|-++
T Consensus 158 Di~aVGt~~G~~~E~l~~~~~~s--------------~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 158 DIGAVGTKSGPDYELLTKVLELS--------------EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred EccccccccCCCHHHHHHHHHhc--------------cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 88899998878887766433221 24799999999999999999999999999999887
No 86
>PRK08005 epimerase; Validated
Probab=91.25 E-value=7.1 Score=34.34 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=83.1
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.++|++++.+ |.|- .....+-++...++|+++=+-+.=.. ..+ .++..++.++ .=
T Consensus 74 i~~~~~~gad~It~-H~Ea-------~~~~~~~l~~Ik~~G~k~GlAlnP~T-------p~~----~i~~~l~~vD--~V 132 (210)
T PRK08005 74 LPWLAAIRPGWIFI-HAES-------VQNPSEILADIRAIGAKAGLALNPAT-------PLL----PYRYLALQLD--AL 132 (210)
T ss_pred HHHHHHhCCCEEEE-cccC-------ccCHHHHHHHHHHcCCcEEEEECCCC-------CHH----HHHHHHHhcC--EE
Confidence 57889999998765 7662 23355677888889999766555321 111 2334444332 12
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++..-||=. .|+.--++-.+++.+ +|+.+. +..|.-=|+||.+|+..+ ...++|.+.+|++-.+ +
T Consensus 133 lvMsV~PGf---~GQ~f~~~~~~KI~~-l~~~~~---------~~~I~VDGGI~~~~i~~l-~~aGad~~V~GsaiF~~~ 198 (210)
T PRK08005 133 MIMTSEPDG---RGQQFIAAMCEKVSQ-SREHFP---------AAECWADGGITLRAARLL-AAAGAQHLVIGRALFTTA 198 (210)
T ss_pred EEEEecCCC---ccceecHHHHHHHHH-HHHhcc---------cCCEEEECCCCHHHHHHH-HHCCCCEEEEChHhhCCC
Confidence 568889943 355554444443332 233321 124889999999999765 4589999999988666 5
Q ss_pred HHHHHHHHH
Q 025540 240 EFIDIIKSA 248 (251)
Q Consensus 240 ~F~~Ii~~~ 248 (251)
++.+.++.+
T Consensus 199 d~~~~~~~~ 207 (210)
T PRK08005 199 NYDVTLSQF 207 (210)
T ss_pred CHHHHHHHH
Confidence 666666554
No 87
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.22 E-value=0.31 Score=42.85 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.9
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKS 247 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~ 247 (251)
++||+++|+|+ ++++.+ +...++||++||++-+. + .|.+.++.
T Consensus 193 ~iPvia~GGI~~~~di~~-~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRA-LKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred CCCEEEeCCCCCHHHHHH-HHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 48999999999 677766 56789999999999987 3 45555543
No 88
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=91.09 E-value=2.4 Score=36.33 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 172 GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
|||.+.+.+.++++. ..+|++-.|+++++|..+++.....||+=|.++-..
T Consensus 136 g~g~~~~~~~l~~~~----------------~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 136 GTGKTFDWSLLRGLA----------------SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CCcceEChHHhhccc----------------cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccC
Confidence 477777666544222 137999999999999999999877999999988664
No 89
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=91.08 E-value=0.25 Score=44.12 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=34.2
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHH
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 247 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~ 247 (251)
.+++++|||+++...-++-+...+.|-+.||.+--+ .+..++++.
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~ 226 (230)
T PF01884_consen 181 SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALET 226 (230)
T ss_dssp SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTH
T ss_pred CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHH
Confidence 468999999999999999999999999999998776 434444433
No 90
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=90.98 E-value=0.47 Score=41.33 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=38.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc--hHHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~~ 248 (251)
.+|+++||+|+.....+-+...++|.+++|.+.++ +.|.++++.+
T Consensus 72 ~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 72 GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHh
Confidence 37999999999877777777789999999999997 4688887765
No 91
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=90.92 E-value=1.1 Score=41.73 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=35.3
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~ 246 (251)
++||++-|.| +++.+.+++...++||+.+|++.+. |. |.+|-+
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH
Confidence 4899999999 7778888888899999999999996 64 555533
No 92
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=90.77 E-value=0.39 Score=42.16 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
++|++|||+++.....+-+...++||+.||
T Consensus 176 ~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 176 GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 389999999976666666655679999997
No 93
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.55 E-value=9.9 Score=32.29 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCcc--ccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEE
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF--VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWV 92 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~--~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~v 92 (251)
.+.+++.+.++.+.+.-. .-+++-.--|. ..+..+.+.. ..+.+|+-++...+ ..+.+.++|++++
T Consensus 13 ~~~~~~~~~~~~l~~~G~---~~vev~~~~~~~~~~i~~l~~~~-~~~~iGag~v~~~~--------~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGI---RAIEITLRTPGALEAIRALRKEF-PEALIGAGTVLTPE--------QADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCC---CEEEEeCCChhHHHHHHHHHHHC-CCCEEEEEeCCCHH--------HHHHHHHcCCCEE
Confidence 346777777777665311 22333333221 2333333332 34778888877444 4788999999999
Q ss_pred EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccC
Q 025540 93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (251)
Q Consensus 93 iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIG 172 (251)
..+++- .. =++++.+.|+..+ +|=+. . +|+...++ ..-.+|.+-|.
T Consensus 81 ~~p~~~---------~~---~~~~~~~~~~~~i--~gv~t--------~----~e~~~A~~----~Gad~i~~~p~---- 126 (190)
T cd00452 81 VSPGLD---------PE---VVKAANRAGIPLL--PGVAT--------P----TEIMQALE----LGADIVKLFPA---- 126 (190)
T ss_pred EcCCCC---------HH---HHHHHHHcCCcEE--CCcCC--------H----HHHHHHHH----CCCCEEEEcCC----
Confidence 877653 22 2334445666544 35331 1 12323332 22234555451
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+..++ .++.+++. ..++|++-=|+|+++|+.+++.. ++||+-+|++-.
T Consensus 127 --~~~g~~----~~~~l~~~---------~~~~p~~a~GGI~~~n~~~~~~~-G~~~v~v~s~i~ 175 (190)
T cd00452 127 --EAVGPA----YIKALKGP---------FPQVRFMPTGGVSLDNAAEWLAA-GVVAVGGGSLLP 175 (190)
T ss_pred --cccCHH----HHHHHHhh---------CCCCeEEEeCCCCHHHHHHHHHC-CCEEEEEchhcc
Confidence 111233 23333332 23489999999999999999886 599999999865
No 94
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.39 E-value=0.57 Score=40.80 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=35.7
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~~ 248 (251)
.+||++||+|+.....+.+...++|++.+|.+.++ + .+.++++.+
T Consensus 74 ~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 74 DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh
Confidence 38999999999966666666679999999999998 4 566666654
No 95
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=90.38 E-value=12 Score=36.59 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=48.1
Q ss_pred CeEEEEcccCccC-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 160 NIVLAYEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 160 ~~iIAYEPvWAIG-tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
..+++ | ..|=| ||...+..-+..+.+ +|+.+...++. ...+||+-.|++.......-+-..+.||+.+|.+-+
T Consensus 184 D~Ivv-e-~EAGGHtg~~~~~~Llp~i~~-lrd~v~~~~~y--~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 184 DDICV-E-ADSGGHTDNRPLVVLLPAIIR-LRDTLMRRYGY--RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred cEEEE-e-ccCCCCCCCCcHHHHHHHHHH-HHHHHhhcccC--CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 34444 7 57777 565566655554432 34555444432 346899999999777766666678999999999755
No 96
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=89.85 E-value=0.55 Score=41.96 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=34.8
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
++||++||+|+..+..+-+...++|++.||++.+. ++ |.++.+.+
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc
Confidence 38999999999766666555579999999999997 54 55555543
No 97
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=89.24 E-value=1 Score=40.39 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=40.3
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc--hHHHHHHHHHhc
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSAEL 250 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~~~~ 250 (251)
.+++|||+++....+.-+...+.|-+.+|...-+ +.|.+++....+
T Consensus 192 ~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~~~k~ 239 (240)
T COG1646 192 TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAIKS 239 (240)
T ss_pred ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHHHhhc
Confidence 4899999999999989899899999999999887 578888887654
No 98
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=89.18 E-value=0.71 Score=41.84 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=36.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-----h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-----P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-----~-~F~~Ii~~~ 248 (251)
++||.+||+|+.+++.+++. .++|.+.+|++.++ + .|.++.+.+
T Consensus 76 ~~~v~vGGGIr~e~v~~~l~-aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 76 PGGLQVGGGINDTNAQEWLD-EGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred CCCEEEeCCcCHHHHHHHHH-cCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 38999999999988888777 89999999998875 2 466666654
No 99
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.88 E-value=1.3 Score=40.92 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..+|+++++++..+|+. ..++++.-=|+|+++|+.+++ ..++|++-+|+.-++
T Consensus 224 n~~~e~l~~av~~~~~~---------~~~i~leAsGGIt~~ni~~ya-~tGvD~Isvgsl~~s 276 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQ---------NPRVKIEASGNITLETIRAVA-ETGVDYISSSAPITR 276 (288)
T ss_pred CCCHHHHHHHHHHHHhc---------CCCeEEEEECCCCHHHHHHHH-HcCCCEEEEchhhhC
Confidence 56899999999888753 346899999999999999987 589999999998765
No 100
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.73 E-value=6.7 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=34.5
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++||+.+|++ +++.+.+++....+|.+.+|++.+- |+|.
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~ 332 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLP 332 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHH
Confidence 4899999999 5888999999999999999999996 7764
No 101
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=87.86 E-value=1.5 Score=38.23 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=72.4
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
=.+.++++|++++. =|.| +.+.+.+-++...++|+++=+.+.=...- +.++.+++. ..
T Consensus 72 ~i~~~~~~g~~~i~-~H~E-------~~~~~~~~i~~ik~~g~k~GialnP~T~~-----------~~~~~~l~~---vD 129 (201)
T PF00834_consen 72 YIEEFAEAGADYIT-FHAE-------ATEDPKETIKYIKEAGIKAGIALNPETPV-----------EELEPYLDQ---VD 129 (201)
T ss_dssp HHHHHHHHT-SEEE-EEGG-------GTTTHHHHHHHHHHTTSEEEEEE-TTS-G-----------GGGTTTGCC---SS
T ss_pred HHHHHHhcCCCEEE-Eccc-------chhCHHHHHHHHHHhCCCEEEEEECCCCc-----------hHHHHHhhh---cC
Confidence 36789999999764 4776 33445577888888999977666422100 112233332 22
Q ss_pred C-eEEEEcccCccC-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 160 N-IVLAYEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 160 ~-~iIAYEPvWAIG-tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
- ++..-|| | +|+.-.++-.+ -++.+|+.+.+. +.++.|.-=|+||.+|+..+. ..++|.+.+|++-
T Consensus 130 ~VlvMsV~P----G~~Gq~f~~~~~~-KI~~l~~~~~~~-----~~~~~I~vDGGI~~~~~~~~~-~aGad~~V~Gs~i 197 (201)
T PF00834_consen 130 MVLVMSVEP----GFGGQKFIPEVLE-KIRELRKLIPEN-----GLDFEIEVDGGINEENIKQLV-EAGADIFVAGSAI 197 (201)
T ss_dssp EEEEESS-T----TTSSB--HGGHHH-HHHHHHHHHHHH-----TCGSEEEEESSESTTTHHHHH-HHT--EEEESHHH
T ss_pred EEEEEEecC----CCCcccccHHHHH-HHHHHHHHHHhc-----CCceEEEEECCCCHHHHHHHH-HcCCCEEEECHHH
Confidence 2 4577788 4 46654333332 223334444332 356889999999999997766 5799999998764
No 102
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.31 E-value=0.73 Score=41.24 Aligned_cols=139 Identities=13% Similarity=0.045 Sum_probs=77.0
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHH-------HHhcCCcHHHHHHHHHHH
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE-------QREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~-------~r~~g~~~~~~~~Ql~~~ 151 (251)
=.++.+-++|++.|+||=.=-+ |...-+++. +.|=..++.+.=-.. ....+.+...+.+++..
T Consensus 86 e~~~~~l~~Ga~rvvigT~a~~------~p~~l~~~~---~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~- 155 (241)
T PRK14114 86 DYAEKLRKLGYRRQIVSSKVLE------DPSFLKFLK---EIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE- 155 (241)
T ss_pred HHHHHHHHCCCCEEEECchhhC------CHHHHHHHH---HhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-
Confidence 3466788899999999964221 222223332 224345666552100 00122222333333322
Q ss_pred HhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHH-HHhcCC----C
Q 025540 152 ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCK-ELAAQP----D 226 (251)
Q Consensus 152 l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~-~l~~~~----~ 226 (251)
.. ...+ -|=-+=--||.+-++.+-++++ ++. .++||+++|+|+.-... ++.... +
T Consensus 156 ---~g-~~~i--i~tdI~rdGt~~G~d~el~~~l----~~~----------~~~pviasGGv~s~~Dl~~l~~~~~~~~g 215 (241)
T PRK14114 156 ---YG-LEEI--VHTEIEKDGTLQEHDFSLTRKI----AIE----------AEVKVFAAGGISSENSLKTAQRVHRETNG 215 (241)
T ss_pred ---cC-CCEE--EEEeechhhcCCCcCHHHHHHH----HHH----------CCCCEEEECCCCCHHHHHHHHhcccccCC
Confidence 11 2333 3555666788887877776543 332 24899999999985544 444432 5
Q ss_pred -CCEEEEcCccCc-h-HHHHHHHH
Q 025540 227 -VDGFLVGGASLK-P-EFIDIIKS 247 (251)
Q Consensus 227 -vDG~LVG~asl~-~-~F~~Ii~~ 247 (251)
++|++||+|-++ . ++.++++.
T Consensus 216 ~v~gvivg~Al~~g~i~~~e~~~~ 239 (241)
T PRK14114 216 LLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_pred cEEEEEEehHHHCCCCCHHHHHHh
Confidence 999999999776 2 45555443
No 103
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=87.31 E-value=0.98 Score=40.18 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=32.5
Q ss_pred cceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccCc--hHHHHHHHH
Q 025540 204 ATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK--PEFIDIIKS 247 (251)
Q Consensus 204 ~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~ 247 (251)
.+||++.|+|+.- ...+++...++||+++|.|-+. -++.++.+.
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~ 243 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAY 243 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHH
Confidence 4899999999874 5556676789999999999665 244444443
No 104
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=87.23 E-value=21 Score=31.81 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=93.4
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCcccccc----ccHHHHHhCC
Q 025540 13 CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGE----ISAEMLVNLE 88 (251)
Q Consensus 13 mn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGe----iS~~mLkd~G 88 (251)
.+.+.++..++++...+. +++-++.+| .++..+.....+++.+...==+....|.-|=+ -+.+.+.+.|
T Consensus 31 p~~~~~~~~~~~~~a~~~------~~~~v~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEG------GADAVLLHK-GIVRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhc------CCCEEEeCc-chhhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 455667777777765542 344455554 33444333222344433311011222221211 3478888999
Q ss_pred CCEEEe----CchhhccccccChHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 025540 89 IPWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI 161 (251)
Q Consensus 89 ~~~vii----GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC---iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~ 161 (251)
++.+-+ |.+..+.++ +.+.+=...|.+.|+..++- -|....+ .+.+.+.+..+...+ ..-.
T Consensus 104 a~~v~~~~~~g~~~~~~~~----~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~----~~~~~~~~~~~~a~~----~GAD 171 (258)
T TIGR01949 104 ADAVSIHVNVGSDTEWEQI----RDLGMIAEICDDWGVPLLAMMYPRGPHIDD----RDPELVAHAARLGAE----LGAD 171 (258)
T ss_pred CCEEEEEEecCCchHHHHH----HHHHHHHHHHHHcCCCEEEEEeccCccccc----ccHHHHHHHHHHHHH----HCCC
Confidence 987665 332222222 23444444566688766552 1221111 112222221222222 1112
Q ss_pred EEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-------cccHHHHhcCCCCCEEEEcC
Q 025540 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-------GANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 162 iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-------~~n~~~l~~~~~vDG~LVG~ 234 (251)
+|... |. .+++ .+|+.... ..+||+-=|+++ .+|+.+++. .++||+-+|+
T Consensus 172 yikt~--~~------~~~~-------~l~~~~~~-------~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~Gia~g~ 228 (258)
T TIGR01949 172 IVKTP--YT------GDID-------SFRDVVKG-------CPAPVVVAGGPKTNSDREFLQMIKDAME-AGAAGVAVGR 228 (258)
T ss_pred EEecc--CC------CCHH-------HHHHHHHh-------CCCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcEEehhh
Confidence 33321 21 1222 34444321 247888878888 556665554 7999999999
Q ss_pred ccCc-hHHHHHHHH
Q 025540 235 ASLK-PEFIDIIKS 247 (251)
Q Consensus 235 asl~-~~F~~Ii~~ 247 (251)
+.++ ++..+.++.
T Consensus 229 ~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 229 NIFQHDDPVGITKA 242 (258)
T ss_pred HhhcCCCHHHHHHH
Confidence 9998 655444443
No 105
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=87.17 E-value=1.3 Score=39.78 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.3
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
.+||++||.++.-...+.+...++|++.||++.++ ++ +.++++.+
T Consensus 74 ~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 74 FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF 120 (258)
T ss_pred CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh
Confidence 38999999996554444444679999999999887 54 56666654
No 106
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=87.01 E-value=8 Score=34.48 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=31.3
Q ss_pred cceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccCc--hHHHHHHHH
Q 025540 204 ATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK--PEFIDIIKS 247 (251)
Q Consensus 204 ~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~ 247 (251)
++||++.|+|+.- .+.+++...++||+++|.+-+. -++.++.+.
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~ 245 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEY 245 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHH
Confidence 4899998888774 5666666766999999999665 244444433
No 107
>PLN02389 biotin synthase
Probab=86.80 E-value=30 Score=33.08 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=82.2
Q ss_pred ccHHHHHhCCCCEEEeCch--h--hcccc-ccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHH
Q 025540 79 ISAEMLVNLEIPWVILGHS--E--RRLIL-NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHS--E--RR~~f-~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql~ 149 (251)
=....||++|++.+-++.- + -|++. ..+-+..-+-++.|.+.|+.+ |+=.||+.++|- + ....|+
T Consensus 179 E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv-----~-~l~~Lr 252 (379)
T PLN02389 179 EQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRV-----G-LLHTLA 252 (379)
T ss_pred HHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHH-----H-HHHHHH
Confidence 3456778889999877764 2 12221 346667778899999999964 333578877762 1 112222
Q ss_pred HHHhccC-CCCCeE-EEEccc--CccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-ccHHHHhcC
Q 025540 150 AIADRVS-SWSNIV-LAYEPV--WAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-ANCKELAAQ 224 (251)
Q Consensus 150 ~~l~~i~-~~~~~i-IAYEPv--WAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n~~~l~~~ 224 (251)
. +. +...+. -.+-|. ..++.-.++++++.-.+++..|-.+-+. .++ +-||-++- .....++-.
T Consensus 253 ~----L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~-------~i~-i~~gr~~l~~~~~~~~l~ 320 (379)
T PLN02389 253 T----LPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKA-------MVR-LSAGRVRFSMAEQALCFL 320 (379)
T ss_pred h----cccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCc-------ccc-ccccccccChhHHHHHHH
Confidence 2 21 001010 112232 1122223578989888999888765321 233 34776532 334577888
Q ss_pred CCCCEEEEcCccC
Q 025540 225 PDVDGFLVGGASL 237 (251)
Q Consensus 225 ~~vDG~LVG~asl 237 (251)
.++|++++|+--|
T Consensus 321 ~GAN~~~~g~~~L 333 (379)
T PLN02389 321 AGANSIFTGDKLL 333 (379)
T ss_pred hCCCEEEECCccc
Confidence 8999999999744
No 108
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.75 E-value=8.3 Score=32.99 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=67.2
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~ 159 (251)
.++...++|++++.+||.-. .+ +..+...++.. .+| .. |.+ |+..... ..
T Consensus 76 ~~~~A~~~gAdgv~~p~~~~------~~------~~~~~~~~~~~--i~G-~~-------t~~----e~~~A~~----~G 125 (187)
T PRK07455 76 DLEEAIAAGAQFCFTPHVDP------EL------IEAAVAQDIPI--IPG-AL-------TPT----EIVTAWQ----AG 125 (187)
T ss_pred HHHHHHHcCCCEEECCCCCH------HH------HHHHHHcCCCE--EcC-cC-------CHH----HHHHHHH----CC
Confidence 47788999999999999643 22 22344455532 356 21 221 2223332 12
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
-.+|..=|. .....++.++. ++.. -.++|++==|+|+++|+.+++. .++||+-+|++-++
T Consensus 126 adyv~~Fpt-----~~~~G~~~l~~----~~~~---------~~~ipvvaiGGI~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 126 ASCVKVFPV-----QAVGGADYIKS----LQGP---------LGHIPLIPTGGVTLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred CCEEEECcC-----CcccCHHHHHH----HHhh---------CCCCcEEEeCCCCHHHHHHHHH-CCCeEEEEehhccc
Confidence 234444452 22234555442 2222 1248999999999999999998 79999999998654
No 109
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=86.70 E-value=6.7 Score=36.41 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=34.5
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++||+.+|++ +++.+.+++....+|.+-+|++.+. |+|.
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~ 330 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWP 330 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHH
Confidence 4899999998 7888999999888999999999997 7763
No 110
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=86.64 E-value=8.4 Score=34.20 Aligned_cols=178 Identities=19% Similarity=0.177 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCceeEE-EcCcccc------HHHHHhhcCCCceEeeecccccCCccccccccHHHHHh
Q 025540 14 NGTPEEVKKIVSVLNEGQVPSSDVVEVV-VSPPFVF------LGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVN 86 (251)
Q Consensus 14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~-i~Pp~~~------L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd 86 (251)
+.+.+++.++++++.+. ++++ +--|... +..+++.++..+.++ |+- =+=||.+-++|..+
T Consensus 12 ~~~l~~Ai~~a~~v~~~-------~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvA--D~K----t~D~G~~e~~ma~~ 78 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-------VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVA--DLK----TADAGAIEARMAFE 78 (217)
T ss_pred ccCHHHHHHHHHHhhhc-------ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEe--eee----ecchhHHHHHHHHH
Confidence 35677887777765441 2322 2333332 233334333344343 322 23578889999999
Q ss_pred CCCCEEE-eCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEE
Q 025540 87 LEIPWVI-LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAY 165 (251)
Q Consensus 87 ~G~~~vi-iGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAY 165 (251)
.|++|+- +|=+ .+++|.+-++.|.+.|....+=.= ...+.+-..++|+.. ++ ..++--
T Consensus 79 aGAd~~tV~g~A--------~~~TI~~~i~~A~~~~~~v~iDl~-------~~~~~~~~~~~l~~~--gv----d~~~~H 137 (217)
T COG0269 79 AGADWVTVLGAA--------DDATIKKAIKVAKEYGKEVQIDLI-------GVWDPEQRAKWLKEL--GV----DQVILH 137 (217)
T ss_pred cCCCEEEEEecC--------CHHHHHHHHHHHHHcCCeEEEEee-------cCCCHHHHHHHHHHh--CC----CEEEEE
Confidence 9999975 4444 578999999999999977654211 112334444555541 11 222222
Q ss_pred cccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 166 EPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
-++=+==+|+..+-++++++ ++.. ....+|=-.|+++|++...+... ++|=+.|||+--+
T Consensus 138 ~g~D~q~~G~~~~~~~l~~i----k~~~--------~~g~~vAVaGGI~~~~i~~~~~~-~~~ivIvGraIt~ 197 (217)
T COG0269 138 RGRDAQAAGKSWGEDDLEKI----KKLS--------DLGAKVAVAGGITPEDIPLFKGI-GADIVIVGRAITG 197 (217)
T ss_pred ecccHhhcCCCccHHHHHHH----HHhh--------ccCceEEEecCCCHHHHHHHhcC-CCCEEEECchhcC
Confidence 22222225777666666644 4332 12367889999999999777665 4999999998765
No 111
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=85.95 E-value=26 Score=31.52 Aligned_cols=198 Identities=13% Similarity=0.117 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCc----eEeeecccccCCccc-cccccHHHHHhCC
Q 025540 14 NGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF----HVAAQNCWVKKGGAF-TGEISAEMLVNLE 88 (251)
Q Consensus 14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i----~vgAQn~~~~~~Ga~-TGeiS~~mLkd~G 88 (251)
..+.++..++++...+ .+++-++.+| .++......+.+++ .+.+.... ...|.. +=--+++.+.+.|
T Consensus 35 ~~~~~d~~~~~~~a~~------~~~~av~v~~-~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 35 IDGLVDIRDTVNKVAE------GGADAVLMHK-GLARHGHRGYGRDVGLIVHLSASTSL-SPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CcCcCCHHHHHHHHHh------cCCCEEEeCH-hHHhhhccccCCCCcEEEEEcCCCCC-CCCCCcceeeecHHHHHHcC
Confidence 4456677777776544 2344455554 45554444333223 23321111 122332 1122578889999
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEE
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAY 165 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC---iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAY 165 (251)
++-+-+----......+.-+.+.+=...|.+.|+..++= -|...+ .+.+.+.+....+...+ ..-.+|--
T Consensus 107 ad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e---~~~~~~~i~~a~~~a~e----~GAD~vKt 179 (267)
T PRK07226 107 ADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIK---NEYDPEVVAHAARVAAE----LGADIVKT 179 (267)
T ss_pred CCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccC---CCccHHHHHHHHHHHHH----HCCCEEee
Confidence 875544211001111223345555566777789875551 122111 11233333332232222 11222322
Q ss_pred cccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHH------HHhcCCCCCEEEEcCccCc-
Q 025540 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCK------ELAAQPDVDGFLVGGASLK- 238 (251)
Q Consensus 166 EPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~------~l~~~~~vDG~LVG~asl~- 238 (251)
. |. | + .+.+|+++. +..+||.-=|+++.+|.. ..+...+.||+.+|++.++
T Consensus 180 ~--~~---~---~-------~~~l~~~~~-------~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 180 N--YT---G---D-------PESFREVVE-------GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred C--CC---C---C-------HHHHHHHHH-------hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 1 21 1 1 244555543 124889999999988732 2223478999999999998
Q ss_pred hHHHHHHHHH
Q 025540 239 PEFIDIIKSA 248 (251)
Q Consensus 239 ~~F~~Ii~~~ 248 (251)
++....++.+
T Consensus 238 ~~p~~~~~~l 247 (267)
T PRK07226 238 EDPEAITRAI 247 (267)
T ss_pred CCHHHHHHHH
Confidence 6655555443
No 112
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=85.88 E-value=2.6 Score=32.43 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcC-CCCCEEEEcCc
Q 025540 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQ-PDVDGFLVGGA 235 (251)
Q Consensus 175 ~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~-~~vDG~LVG~a 235 (251)
.+.+.+...++.+.+|+. .++++|+-||.--..+..+++.. +++|-+.+|-+
T Consensus 61 ~~~~~~~~~~l~~~~k~~---------~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 61 MTPNLPEAKRLARAIKER---------NPNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp SSTHHHHHHHHHHHHHTT---------CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CcCcHHHHHHHHHHHHhc---------CCCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 344555566666665532 56799999999888888887776 89999999965
No 113
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=85.48 E-value=0.84 Score=40.84 Aligned_cols=62 Identities=6% Similarity=-0.089 Sum_probs=44.1
Q ss_pred EEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc---CCCCCEEEEcCccCc
Q 025540 163 LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA---QPDVDGFLVGGASLK 238 (251)
Q Consensus 163 IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~---~~~vDG~LVG~asl~ 238 (251)
|-|=-+=--||..-++.+-+++ +++. .++||+|+|+|+.-.....+. ..++||+++|.|-++
T Consensus 166 ii~tdI~~dGt~~G~d~~l~~~----l~~~----------~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~ 230 (243)
T TIGR01919 166 VVVTDSKKDGLSGGPNELLLEV----VAAR----------TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYA 230 (243)
T ss_pred EEEEecCCcccCCCcCHHHHHH----HHhh----------CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHc
Confidence 3456677788888887776553 3332 248999999999865554432 458999999999665
No 114
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.35 E-value=2.6 Score=38.37 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.-.+|...|. +|++++++++.+++ ++|+.-=|++|++|+.+++. .++||+-+|+--++
T Consensus 202 gaDyI~ld~~---------~~e~l~~~~~~~~~------------~ipi~AiGGI~~~ni~~~a~-~Gvd~Iav~sl~~~ 259 (268)
T cd01572 202 GADIIMLDNM---------SPEELREAVALLKG------------RVLLEASGGITLENIRAYAE-TGVDYISVGALTHS 259 (268)
T ss_pred CCCEEEECCc---------CHHHHHHHHHHcCC------------CCcEEEECCCCHHHHHHHHH-cCCCEEEEEeeecC
Confidence 3467888776 37777776665532 48899999999999999875 79999999987664
No 115
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=34.6
Q ss_pred ceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hH-HHHH
Q 025540 205 TRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDI 244 (251)
Q Consensus 205 i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~I 244 (251)
+||+.-|+| +++.+.+.+...++||++||++++. |. |..|
T Consensus 199 ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 899999998 7788889999999999999999997 64 5554
No 116
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.26 E-value=1.4 Score=39.11 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=34.8
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~~ 248 (251)
++||..||+++.....+-+...++|++.+|++.++ + .|.+|.+.+
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 48999999999665555444488999999999987 4 577776654
No 117
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=85.25 E-value=5.3 Score=31.43 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCchHHHHHHHHH
Q 025540 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 248 (251)
Q Consensus 175 ~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~F~~Ii~~~ 248 (251)
.+.+...+.++.+.||+. .++++|+.||..-..+..+++..+.+|.+..|-.= ..|.++++..
T Consensus 48 ~~~~~~~~~~~~~~ik~~---------~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE--~~~~~l~~~l 110 (127)
T cd02068 48 MTSAIYEALELAKIAKEV---------LPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE--ETFLKLLEEL 110 (127)
T ss_pred ccccHHHHHHHHHHHHHH---------CCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH--HHHHHHHHHH
Confidence 344555677777777765 35699999999888888887778899999999542 3577776654
No 118
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=85.09 E-value=2.9 Score=36.64 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=71.4
Q ss_pred EEcCccccHHHHHhhcCCCceEeeecccccCCcc---cccc------ccHHHHHhCCCCEEEeCchhhccccccChHHHH
Q 025540 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGA---FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVG 111 (251)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga---~TGe------iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~ 111 (251)
.+.|++-.+..+.+.. ++. .++-..+.|. ||-+ -...+++++|++.+.+|=--+ =++-|....
T Consensus 34 GlTPS~g~i~~~~~~~--~ip---v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~---dg~iD~~~~ 105 (201)
T PF03932_consen 34 GLTPSLGLIRQAREAV--DIP---VHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTE---DGEIDEEAL 105 (201)
T ss_dssp -B---HHHHHHHHHHT--TSE---EEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BET---TSSB-HHHH
T ss_pred CcCcCHHHHHHHHhhc--CCc---eEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC---CCCcCHHHH
Confidence 4678888888776643 222 2333333322 3332 256788999999999997544 245676667
Q ss_pred HHHHHHHHCCCeEEEE--eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCC-HHHHHHHHHH
Q 025540 112 DKVAYALSQGLKVIAC--VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVAT-PAQAQEVHFE 188 (251)
Q Consensus 112 ~Kv~~al~~gl~pIlC--iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~-~e~i~~~~~~ 188 (251)
+++..+.. |+...+= +.++. ....-.+||... + .+++.= +|...+ .+-+....+.
T Consensus 106 ~~Li~~a~-~~~~tFHRAfD~~~-------d~~~al~~L~~l--G---~~rVLT---------SGg~~~a~~g~~~L~~l 163 (201)
T PF03932_consen 106 EELIEAAG-GMPVTFHRAFDEVP-------DPEEALEQLIEL--G---FDRVLT---------SGGAPTALEGIENLKEL 163 (201)
T ss_dssp HHHHHHHT-TSEEEE-GGGGGSS-------THHHHHHHHHHH--T----SEEEE---------STTSSSTTTCHHHHHHH
T ss_pred HHHHHhcC-CCeEEEeCcHHHhC-------CHHHHHHHHHhc--C---CCEEEC---------CCCCCCHHHHHHHHHHH
Confidence 77776653 7776650 11111 011112233221 2 223211 132222 2333322222
Q ss_pred HHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCE
Q 025540 189 LRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 229 (251)
Q Consensus 189 IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG 229 (251)
++.. ...+.|+-||+|+++|+.++....++.=
T Consensus 164 v~~a---------~~~i~Im~GgGv~~~nv~~l~~~tg~~~ 195 (201)
T PF03932_consen 164 VEQA---------KGRIEIMPGGGVRAENVPELVEETGVRE 195 (201)
T ss_dssp HHHH---------TTSSEEEEESS--TTTHHHHHHHHT-SE
T ss_pred HHHc---------CCCcEEEecCCCCHHHHHHHHHhhCCeE
Confidence 2221 3568999999999999999988766653
No 119
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=84.52 E-value=15 Score=34.39 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 184 EVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 184 ~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
+..+.||+.+ ++||+--|.++++.+.+++....+|++.+|++.+- |+|.
T Consensus 275 ~~~~~ik~~~----------~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~ 324 (338)
T cd02933 275 DFLDFLRKAF----------KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLV 324 (338)
T ss_pred HHHHHHHHHc----------CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHH
Confidence 4455666643 38999999999999999999999999999999997 7764
No 120
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=84.27 E-value=5.1 Score=31.10 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
+...+.+.++.+.+|+. . .++++|+.||..-..+. +.+...++|+++=.+.
T Consensus 61 ~~~~~~~~~~i~~l~~~----~----~~~~~i~vGG~~~~~~~-~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 61 TTHMTLMKEVIEELKEA----G----LDDIPVLVGGAIVTRDF-KFLKEIGVDAYFGPAT 111 (119)
T ss_pred cccHHHHHHHHHHHHHc----C----CCCCeEEEECCCCChhH-HHHHHcCCeEEECCHH
Confidence 44567777777777753 1 13699999999876644 6788899999886544
No 121
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=84.07 E-value=17 Score=33.67 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 025540 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI 161 (251)
Q Consensus 82 ~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~ 161 (251)
+.+.+.|++.|.+++- -.. .-++...++|+..+..|+...+.+ .+.+ ..-.
T Consensus 81 ~~~~~~~v~~v~~~~g-------~p~----~~i~~lk~~g~~v~~~v~s~~~a~--------------~a~~----~GaD 131 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAG-------NPG----KYIPRLKENGVKVIPVVASVALAK--------------RMEK----AGAD 131 (307)
T ss_pred HHHHhCCCCEEEEcCC-------CcH----HHHHHHHHcCCEEEEEcCCHHHHH--------------HHHH----cCCC
Confidence 4566889999987432 122 345666667988777676433221 1111 1223
Q ss_pred EEEEcccCccCC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCccc-HHHHhcCCCCCEEEEcCccCc
Q 025540 162 VLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 162 iIAYEPvWAIGt-G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n-~~~l~~~~~vDG~LVG~asl~ 238 (251)
.|..+...+=|. |...+.+.+.++ ++. -++||+--|++...+ +.+.+. .+.||+.+|..-+-
T Consensus 132 ~Ivv~g~eagGh~g~~~~~~ll~~v----~~~----------~~iPviaaGGI~~~~~~~~al~-~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 132 AVIAEGMESGGHIGELTTMALVPQV----VDA----------VSIPVIAAGGIADGRGMAAAFA-LGAEAVQMGTRFLC 195 (307)
T ss_pred EEEEECcccCCCCCCCcHHHHHHHH----HHH----------hCCCEEEECCCCCHHHHHHHHH-cCCCEeecchHHhc
Confidence 455566666564 433333333322 221 138999999887766 556555 79999999997553
No 122
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.06 E-value=2.2 Score=37.33 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.7
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~~ 248 (251)
.+|++.||+++.-...+.+...++|++.+|.+.++ + -|.++.+.+
T Consensus 76 ~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 76 GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh
Confidence 38999999999776667777799999999999997 4 467776664
No 123
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=83.34 E-value=2.8 Score=39.15 Aligned_cols=74 Identities=26% Similarity=0.250 Sum_probs=51.7
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc----CCCCCEEEEcCccCchHHHHH
Q 025540 169 WAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA----QPDVDGFLVGGASLKPEFIDI 244 (251)
Q Consensus 169 WAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~----~~~vDG~LVG~asl~~~F~~I 244 (251)
-.|+|+--....-+.++.+.+.+.|. +-++||+.|||=||+-+.+.+. ...=+-.|+.+|+|+-+|.+|
T Consensus 171 HlIsTdPki~D~p~~EAak~lEdvLq-------AVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~i 243 (403)
T COG2069 171 HLISTDPKIKDTPAKEAAKTLEDVLQ-------AVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERI 243 (403)
T ss_pred EeecCCccccCCCHHHHHHHHHHHHH-------hcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccccCHHHH
Confidence 47888755322223344444444443 4469999999999998766553 334578999999999999999
Q ss_pred HHHHh
Q 025540 245 IKSAE 249 (251)
Q Consensus 245 i~~~~ 249 (251)
.+++.
T Consensus 244 a~AA~ 248 (403)
T COG2069 244 AEAAL 248 (403)
T ss_pred HHHHH
Confidence 98764
No 124
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=83.20 E-value=2.5 Score=36.71 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=47.2
Q ss_pred CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 158 ~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+.+.|+...- +.+|.....+.+.+ |++. -.+|++.||+|+.-...+-+...++|.+++|++.+
T Consensus 43 ~d~l~v~dl~~--~~~~~~~~~~~i~~----i~~~----------~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 43 AKWLHVVDLDG--AKGGEPVNLELIEE----IVKA----------VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCEEEEECCCc--cccCCCCCHHHHHH----HHHh----------cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 34566766653 23344444444433 3332 13899999999985544444457899999999999
Q ss_pred c-hH-HHHHHHHH
Q 025540 238 K-PE-FIDIIKSA 248 (251)
Q Consensus 238 ~-~~-F~~Ii~~~ 248 (251)
. ++ |.++.+.+
T Consensus 107 ~dp~~~~~i~~~~ 119 (234)
T cd04732 107 KNPELVKELLKEY 119 (234)
T ss_pred hChHHHHHHHHHc
Confidence 7 54 56666553
No 125
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=83.18 E-value=26 Score=30.62 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCcccc------HHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCC
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVF------LGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLE 88 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~------L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G 88 (251)
.+.+++.++++.+... . .-++ |-+|+.+ +..+++.. ++..+-+ |+-..+.|.|.. .++.+.|
T Consensus 13 ~~~~~a~~l~~~l~~~-v---~~~k--vG~~l~~~~G~~~i~~lk~~~-~~~~v~~-DLK~~Di~~~v~----~~~~~~G 80 (216)
T PRK13306 13 QDLESAIEDAKKVAEE-V---DIIE--VGTILLLAEGMKAVRVLRALY-PDKIIVA-DTKIADAGKILA----KMAFEAG 80 (216)
T ss_pred CCHHHHHHHHHHcccc-C---CEEE--EChHHHHHhCHHHHHHHHHHC-CCCEEEE-EEeecCCcHHHH----HHHHHCC
Confidence 4578889988877552 1 2233 3344332 22333322 2333321 333456665443 3488999
Q ss_pred CCEEEeCchhhccccccC-hHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC-CCCCeEEEEc
Q 025540 89 IPWVILGHSERRLILNEL-NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYE 166 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~-~~~~~iIAYE 166 (251)
++++.+ | +++ ++.+..-++.+.+.|....+=+=.+.. .+ +++..+. .+ ..-=+..+..
T Consensus 81 ad~vTv-H-------~~a~~~~i~~~~~~~~~~g~~~~V~llts~~-------~~----~l~~~~~-~~~~~~vl~~a~~ 140 (216)
T PRK13306 81 ADWVTV-I-------CAAHIPTIKAALKVAKEFNGEIQIELYGNWT-------WE----QAQQWRD-AGISQVIYHRSRD 140 (216)
T ss_pred CCEEEE-e-------CCCCHHHHHHHHHHHHHcCCEEEEEECCCCC-------HH----HHHHHHc-CChhhhhhhhhhh
Confidence 999976 3 333 445666667667778654443333221 11 1211111 01 0111335666
Q ss_pred ccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHH
Q 025540 167 PVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 245 (251)
Q Consensus 167 PvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii 245 (251)
|-. .|...+|+++.. ||+... .+.+|.--|+|+++++..+... +.|-+.||++-.+ ++..+-+
T Consensus 141 ~~~---~G~v~s~~~~~~----ir~~~~--------~~~~i~V~gGI~~~~~~~~~~~-~ad~~VvGr~I~~a~dp~~a~ 204 (216)
T PRK13306 141 AQL---AGVAWGEKDLNK----VKKLSD--------MGFKVSVTGGLVVEDLKLFKGI-PVKTFIAGRAIRGAADPAAAA 204 (216)
T ss_pred hhh---cCCCCCHHHHHH----HHHHhc--------CCCeEEEcCCCCHhhHHHHhcC-CCCEEEECCcccCCCCHHHHH
Confidence 652 477888888764 444321 2345888899999999886554 7999999999665 4443333
No 126
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.26 E-value=1.1 Score=39.78 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=69.5
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHH-------HHhcCCcHHHHHHHHHHH
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE-------QREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~-------~r~~g~~~~~~~~Ql~~~ 151 (251)
=..+.|.++|++.|++| ++ .+ +-+.+ +++.... | ..++.+.=... ....+.+...+.++++..
T Consensus 86 edv~~l~~~G~~~vivG-ta---a~--~~~~l-~~~~~~~--g-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~ 155 (228)
T PRK04128 86 ESIKDAYEIGVENVIIG-TK---AF--DLEFL-EKVTSEF--E-GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY 155 (228)
T ss_pred HHHHHHHHCCCCEEEEC-ch---hc--CHHHH-HHHHHHc--C-CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH
Confidence 34566778999999999 33 34 22233 3332222 3 25555542100 011233344444455544
Q ss_pred HhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEE
Q 025540 152 ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 231 (251)
Q Consensus 152 l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~L 231 (251)
.. . |-|=-+=--||.+-++ + + .+. + .++|++++|+|+.-....-+...++||++
T Consensus 156 ~~------~--ii~t~i~~dGt~~G~d--~---l----~~~----~-----~~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 156 VN------R--FIYTSIERDGTLTGIE--E---I----ERF----W-----GDEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred hC------E--EEEEeccchhcccCHH--H---H----HHh----c-----CCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 22 2 3455566667766433 1 1 111 1 24899999999986555555557999999
Q ss_pred EcCccCc
Q 025540 232 VGGASLK 238 (251)
Q Consensus 232 VG~asl~ 238 (251)
+|.|-+.
T Consensus 210 vg~al~~ 216 (228)
T PRK04128 210 IGKALYE 216 (228)
T ss_pred EEhhhhc
Confidence 9999765
No 127
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.10 E-value=13 Score=35.35 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=68.5
Q ss_pred cHHHHHhCCCCEEEe---------CchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 80 SAEMLVNLEIPWVIL---------GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 80 S~~mLkd~G~~~vii---------GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
-++.|.+.|++++.+ +|++. .-..+.+.++. .+ .||++ |.-... +... .
T Consensus 146 ~a~~l~eaGvd~I~vhgrt~~~~h~~~~~------~~~~i~~~ik~---~~-ipVIa-G~V~t~-------e~A~----~ 203 (368)
T PRK08649 146 LAPTVVEAGVDLFVIQGTVVSAEHVSKEG------EPLNLKEFIYE---LD-VPVIV-GGCVTY-------TTAL----H 203 (368)
T ss_pred HHHHHHHCCCCEEEEeccchhhhccCCcC------CHHHHHHHHHH---CC-CCEEE-eCCCCH-------HHHH----H
Confidence 457888999999998 34432 12223333332 35 45665 543211 1111 1
Q ss_pred HHhccCCCCCeEEEEcccCccCCCC-CC--CHHHH---HHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcC
Q 025540 151 IADRVSSWSNIVLAYEPVWAIGTGK-VA--TPAQA---QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQ 224 (251)
Q Consensus 151 ~l~~i~~~~~~iIAYEPvWAIGtG~-~a--~~e~i---~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~ 224 (251)
+++ . -..-+.+.++|- .+-|+. .. ...++ .+..+.-|+++.+.. ..++||+-.|++...-...-+-.
T Consensus 204 l~~-a-GAD~V~VG~G~G-s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~----~~~vpVIAdGGI~~~~diakAla 276 (368)
T PRK08649 204 LMR-T-GAAGVLVGIGPG-AACTSRGVLGIGVPMATAIADVAAARRDYLDETG----GRYVHVIADGGIGTSGDIAKAIA 276 (368)
T ss_pred HHH-c-CCCEEEECCCCC-cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc----CCCCeEEEeCCCCCHHHHHHHHH
Confidence 221 0 123356777772 122221 11 12233 344444445554433 23689999999977665555556
Q ss_pred CCCCEEEEcCccC
Q 025540 225 PDVDGFLVGGASL 237 (251)
Q Consensus 225 ~~vDG~LVG~asl 237 (251)
.+.|++.+|+.-+
T Consensus 277 lGAd~Vm~Gs~fa 289 (368)
T PRK08649 277 CGADAVMLGSPLA 289 (368)
T ss_pred cCCCeecccchhc
Confidence 7999999999644
No 128
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=82.03 E-value=21 Score=32.38 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=34.0
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKS 247 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~ 247 (251)
++||+.-|+| +++.+.+++. .+.|++.+|++.+. +. |.+|.+.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHHH
Confidence 4899999999 6788888875 78999999999987 54 4555443
No 129
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=81.98 E-value=7.4 Score=32.55 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=73.3
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-IACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p-IlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
.|.|++....||+.|+++|++-=+|=..+ .|.....-++.|.++||.. ++...... +..--.+|.+-.+
T Consensus 5 ~~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~-------~~~~a~~qA~~f~ 74 (181)
T PF01183_consen 5 HYQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARAT-------NSSDAEAQADYFL 74 (181)
T ss_dssp GGGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TT-------THCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccC-------CcccHHHHHHHHH
Confidence 47899999999999999999988887654 4555667889999999996 44333321 1112345666777
Q ss_pred hcc-CC---CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 153 DRV-SS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 153 ~~i-~~---~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
+.+ .. .-+++|=+|-. .....+.+...+.+....+.+.+..| .-++||.+.
T Consensus 75 ~~~~~~~~~~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G-----~~~~iY~~~ 129 (181)
T PF01183_consen 75 NQVKGGDPGDLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAG-----YKPGIYTSK 129 (181)
T ss_dssp HCTHTSSTSCS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCT-----SEEEEEEEH
T ss_pred HHhcccCCCcceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhC-----CceeEeecH
Confidence 766 31 22467888843 23344555555555554555544443 357889764
No 130
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=81.97 E-value=1.1 Score=36.40 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=29.4
Q ss_pred cCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 202 AAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 202 ~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..-+|+..-|+|||+=+..-+ ..++||+||+|.-+.
T Consensus 30 vRiIrv~CsGrvn~~fvl~Al-~~GaDGV~v~GC~~g 65 (132)
T COG1908 30 VRIIRVMCSGRVNPEFVLKAL-RKGADGVLVAGCKIG 65 (132)
T ss_pred eEEEEeeccCccCHHHHHHHH-HcCCCeEEEeccccc
Confidence 345789999999999876644 589999999998664
No 131
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=81.96 E-value=6.7 Score=36.01 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-.+|+++++.++.+|+. ..++.+.--|+||++|+.+++. .++|.+-+|.-
T Consensus 216 n~~~e~l~~~v~~l~~~---------~~~~~leasGGI~~~ni~~ya~-~GvD~is~gal 265 (277)
T TIGR01334 216 KFTPQQLHHLHERLKFF---------DHIPTLAAAGGINPENIADYIE-AGIDLFITSAP 265 (277)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHh-cCCCEEEeCcc
Confidence 56899999999988743 4567899999999999999876 68999988864
No 132
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=81.94 E-value=16 Score=32.21 Aligned_cols=161 Identities=18% Similarity=0.120 Sum_probs=73.8
Q ss_pred EEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHHHH
Q 025540 7 VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLV 85 (251)
Q Consensus 7 i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLk 85 (251)
+.+||-|-...-...+.++.+++.- .+.+++.. |....+..+.+.+. .++.+.+=++...+ ...|+-+
T Consensus 4 ~~~~~~~~~~~~~l~~~l~~~a~~G---f~~VEl~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--~~~~~~~----- 72 (258)
T PRK09997 4 FSANLSMLFGEYDFLARFEKAAQCG---FRGVEFMF-PYDYDIEELKQVLASNKLEHTLHNLPAGD--WAAGERG----- 72 (258)
T ss_pred eeeeeehhccCCCHHHHHHHHHHhC---CCEEEEcC-CCCCCHHHHHHHHHHcCCcEEEEcCCCCc--cccCcCc-----
Confidence 6788877644333444455455422 35788754 55556677776665 56665431111100 0011000
Q ss_pred hCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEe-CCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 025540 86 NLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV-GETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (251)
Q Consensus 86 d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCi-GE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIA 164 (251)
... +.+++. +..+.+.+-+..|.+.|-..|.|. |-........+..+.+.+.|..+.+.. ....+.|+
T Consensus 73 ---~~~----~~~~~~---~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~ 141 (258)
T PRK09997 73 ---IAC----IPGREE---EFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANML-MKEDILLL 141 (258)
T ss_pred ---ccc----CCCcHH---HHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHcCCEEE
Confidence 000 112221 112446677888999999887764 321100000011223333333332211 12468899
Q ss_pred Eccc-C-ccCCCCCCCHHHHHHHHHHH
Q 025540 165 YEPV-W-AIGTGKVATPAQAQEVHFEL 189 (251)
Q Consensus 165 YEPv-W-AIGtG~~a~~e~i~~~~~~I 189 (251)
|||. + ...+.-.-++++..++++.+
T Consensus 142 lE~~n~~~~~~~~~~~~~~~~~ll~~v 168 (258)
T PRK09997 142 IEPINHFDIPGFHLTGTRQALKLIDDV 168 (258)
T ss_pred EEeCCCcCCCCCccCCHHHHHHHHHHh
Confidence 9984 2 11112224566655544433
No 133
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=81.87 E-value=20 Score=33.56 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=33.8
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++||+.+|++ +++.+.+++....+|.+.+|++.+. |+|.
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~ 316 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFV 316 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHH
Confidence 4899999998 6777888998888999999999997 7653
No 134
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=81.70 E-value=8.6 Score=34.54 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=86.6
Q ss_pred EEcCccccHHHHHhhcCCCceEeeecccccCCccc---ccccc-----HHHHHhCCCCEEEeCchhhccccccChHHHHH
Q 025540 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAF---TGEIS-----AEMLVNLEIPWVILGHSERRLILNELNEFVGD 112 (251)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~---TGeiS-----~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~ 112 (251)
.+.|++-.+..+.+..+ +.+.. |=....|-| ..|++ ..+.+++|++.|.+|-+-- -|+-|...-+
T Consensus 35 G~TPSyG~~k~a~~~~~--ipv~~--MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~---dg~iD~~~le 107 (241)
T COG3142 35 GLTPSYGVIKEAVELSK--IPVYV--MIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTA---DGNIDMPRLE 107 (241)
T ss_pred CCCCCHHHHHHHHhhcC--CceEE--EEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecC---CCccCHHHHH
Confidence 47799988888877532 22221 112233333 23333 3567888999999997733 4556666666
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC-CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 113 KVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 113 Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~-~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
|+..+. .||..-+ -+.++.+..|..++..-+. ...++. =+|.++++.+ -...|++
T Consensus 108 ~Li~aA-~gL~vTF-----------HrAFD~~~d~~~ale~li~~Gv~RIL---------TsGg~~sa~e---g~~~l~~ 163 (241)
T COG3142 108 KLIEAA-GGLGVTF-----------HRAFDECPDPLEALEQLIELGVERIL---------TSGGKASALE---GLDLLKR 163 (241)
T ss_pred HHHHHc-cCCceee-----------ehhhhhcCCHHHHHHHHHHCCCcEEe---------cCCCcCchhh---hHHHHHH
Confidence 665554 3665544 1244555555544322221 123322 1355555443 3445555
Q ss_pred HHHhcCCccccCcceEEEccCCCcccHHHHhcCCCC
Q 025540 192 WLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 227 (251)
Q Consensus 192 ~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~v 227 (251)
++... +..+.|+-||+|+++|..++....++
T Consensus 164 li~~a-----~gri~Im~GaGV~~~N~~~l~~~tg~ 194 (241)
T COG3142 164 LIEQA-----KGRIIIMAGAGVRAENIAELVLLTGV 194 (241)
T ss_pred HHHHh-----cCCEEEEeCCCCCHHHHHHHHHhcCc
Confidence 55432 46799999999999999999666554
No 135
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=81.59 E-value=9.4 Score=37.51 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc-CCCCCEEEEcCcc
Q 025540 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA-QPDVDGFLVGGAS 236 (251)
Q Consensus 158 ~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~-~~~vDG~LVG~as 236 (251)
.++.+|+. |..+++...+.++.+.+|+. .++++|+.||.--.-+..+++. .+.+|-+.+|-+
T Consensus 62 ~~pdvVgi-------s~~t~~~~~a~~~~~~~k~~---------~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEG- 124 (497)
T TIGR02026 62 HCPDLVLI-------TAITPAIYIACETLKFARER---------LPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEG- 124 (497)
T ss_pred cCcCEEEE-------ecCcccHHHHHHHHHHHHHH---------CCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCc-
Confidence 34566665 34566777788888888875 4679999999876777778776 478999999966
Q ss_pred CchHHHHHHHHH
Q 025540 237 LKPEFIDIIKSA 248 (251)
Q Consensus 237 l~~~F~~Ii~~~ 248 (251)
+..|.++++.+
T Consensus 125 -E~~~~~Ll~~l 135 (497)
T TIGR02026 125 -EETVVKLIAAL 135 (497)
T ss_pred -HHHHHHHHHHH
Confidence 24577777654
No 136
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=81.33 E-value=40 Score=30.21 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.8
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+++|+..|+|+ ++++.+++. .+.|++.||++.+.
T Consensus 243 ~ipiia~GGI~~~~da~~~l~-~GAd~V~vg~a~~~ 277 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLM-AGASAVQVATALMW 277 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCccHheEcHHHHh
Confidence 58999999997 588888887 68999999999884
No 137
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=81.31 E-value=33 Score=29.28 Aligned_cols=119 Identities=17% Similarity=0.012 Sum_probs=70.7
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI----lCiGE~~~~r~~g~~~~~~~~Ql~ 149 (251)
.|.|.|....+|..|+++|+|==+|--.+ .|.....-++.|.++||.+= .|.+.+.... |.+
T Consensus 8 ~~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~~~~a~~-----------qA~ 73 (199)
T cd06412 8 GHQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRGAYHFALPDQSSGAA-----------QAD 73 (199)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceEEEEEeecCCCCHHH-----------HHH
Confidence 37789999999999999999988876543 57778899999999999643 4554322222 333
Q ss_pred HHHhccCC------CCCeEEEEcccCccCCCCCCCHHHHHH-HHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 150 AIADRVSS------WSNIVLAYEPVWAIGTGKVATPAQAQE-VHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 150 ~~l~~i~~------~~~~iIAYEPvWAIGtG~~a~~e~i~~-~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
-.++.+.. .-++++-+|-----++....+..++.. +.++++. +.+.. ...++||-+.
T Consensus 74 ~fi~~~~~~~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~f~~~-v~~~~-----G~~~~iY~~~ 137 (199)
T cd06412 74 YFLDHGGGWSPDGRTLPGVLDLEYNPYGATCYGLSPAQMVSWIKDFSDT-YKART-----GRDPVIYTTT 137 (199)
T ss_pred HHHHHcccccCCCCCCCeEEEEecCCCCCccCCCCHHHHHHHHHHHHHH-HHHHH-----CCCcEEEecH
Confidence 44443321 123577888632212212235555433 3333333 33222 2367888754
No 138
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.17 E-value=1.8 Score=38.49 Aligned_cols=61 Identities=20% Similarity=0.093 Sum_probs=43.3
Q ss_pred EEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 163 LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 163 IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
|-|=-+-.-||..-++.+-++.+ ++. . .+++|+|+|+....-.-+...++||++||.|-++
T Consensus 163 ii~tdI~~dGt~~G~d~el~~~~----~~~----------~-~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 163 IIFTYISNEGTTKGIDYNVKDYA----RLI----------R-GLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred EEEecccccccCcCcCHHHHHHH----HhC----------C-CCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 44667778899888877765433 221 1 2489999999966555555679999999998553
No 139
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=81.00 E-value=40 Score=30.02 Aligned_cols=134 Identities=20% Similarity=0.301 Sum_probs=88.6
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE--EEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV--IACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p--IlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~ 158 (251)
.+.+.+.||+++-+ |.| ..+.+.+-++...+.|.++ ++|=+-+.+ .++.+|+.++-
T Consensus 77 i~~fa~agad~It~-H~E-------~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~-------------~i~~~l~~vD~- 134 (220)
T COG0036 77 IEAFAKAGADIITF-HAE-------ATEHIHRTIQLIKELGVKAGLVLNPATPLE-------------ALEPVLDDVDL- 134 (220)
T ss_pred HHHHHHhCCCEEEE-Eec-------cCcCHHHHHHHHHHcCCeEEEEECCCCCHH-------------HHHHHHhhCCE-
Confidence 56788999998855 555 4556667788888889985 555555542 34456665431
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
=++..-+|=. +|+.-.|+-..++ +.+|+++.+ .+ ++.|--=|+||.+|+..+. ..++|=+..|++-.+
T Consensus 135 -VllMsVnPGf---gGQ~Fi~~~l~Ki-~~lr~~~~~-----~~-~~~IeVDGGI~~~t~~~~~-~AGad~~VaGSalF~ 202 (220)
T COG0036 135 -VLLMSVNPGF---GGQKFIPEVLEKI-RELRAMIDE-----RL-DILIEVDGGINLETIKQLA-AAGADVFVAGSALFG 202 (220)
T ss_pred -EEEEeECCCC---cccccCHHHHHHH-HHHHHHhcc-----cC-CeEEEEeCCcCHHHHHHHH-HcCCCEEEEEEEEeC
Confidence 2467888932 5666655554433 344555543 12 6789999999999997654 479999999997666
Q ss_pred -hHHHHHHHHH
Q 025540 239 -PEFIDIIKSA 248 (251)
Q Consensus 239 -~~F~~Ii~~~ 248 (251)
++..+-++..
T Consensus 203 ~~d~~~~i~~~ 213 (220)
T COG0036 203 ADDYKATIREL 213 (220)
T ss_pred CccHHHHHHHH
Confidence 5555555543
No 140
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=80.90 E-value=32 Score=28.96 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=56.8
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI---lCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
.|.|.+....||+.|+++|+|-=+|...+ .|.....-++.|.++||..= +.-..+. -..|.+.
T Consensus 7 ~~q~~id~~~~k~~gi~fviiKateG~~y---~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~~-----------a~~qA~~ 72 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKVGFYHFLVGTSN-----------PEEQAEN 72 (184)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEecCCCcc---cCHhHHHHHHHHHHCCCceEEEEEeeCCCC-----------HHHHHHH
Confidence 47889999999999999999998887654 46778899999999999642 1111111 1245555
Q ss_pred HHhccCC---CCCeEEEEccc
Q 025540 151 IADRVSS---WSNIVLAYEPV 168 (251)
Q Consensus 151 ~l~~i~~---~~~~iIAYEPv 168 (251)
.++.+.. .-++++-+|..
T Consensus 73 f~~~~~~~~~~~~~~lD~E~~ 93 (184)
T cd06525 73 FYNTIKGKKMDLKPALDVEVN 93 (184)
T ss_pred HHHhccccCCCCCeEEEEecC
Confidence 5555542 23577889973
No 141
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.05 E-value=45 Score=31.27 Aligned_cols=124 Identities=11% Similarity=0.109 Sum_probs=78.5
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.+.+++.|+.+= +-.. ++....++|++++.-++...+.+ ...+ ..-
T Consensus 75 l~vi~e~~v~~V~~~~-------G~P~-----~~~~lk~~Gi~v~~~v~s~~~A~--------------~a~~----~Ga 124 (320)
T cd04743 75 LAVVRAIKPTFALIAG-------GRPD-----QARALEAIGISTYLHVPSPGLLK--------------QFLE----NGA 124 (320)
T ss_pred HHHHHhcCCcEEEEcC-------CChH-----HHHHHHHCCCEEEEEeCCHHHHH--------------HHHH----cCC
Confidence 3444578888887752 2112 24667788999988887654332 2222 223
Q ss_pred eEEEEcccCccCC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCC--------CEEE
Q 025540 161 IVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDV--------DGFL 231 (251)
Q Consensus 161 ~iIAYEPvWAIGt-G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~v--------DG~L 231 (251)
..|-.|-..|=|- |...|..-++++...++.... .....++||+.-|+|...-....+...+. +|+.
T Consensus 125 D~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~----~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~ 200 (320)
T cd04743 125 RKFIFEGRECGGHVGPRSSFVLWESAIDALLAANG----PDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVL 200 (320)
T ss_pred CEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhc----ccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEE
Confidence 3566778888773 555566666666666655432 12234799999999988776444444554 8999
Q ss_pred EcCccCc
Q 025540 232 VGGASLK 238 (251)
Q Consensus 232 VG~asl~ 238 (251)
+|.+-|-
T Consensus 201 mGTrFl~ 207 (320)
T cd04743 201 MGTAYLF 207 (320)
T ss_pred EccHHhc
Confidence 9997663
No 142
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=80.00 E-value=4.4 Score=35.93 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=37.8
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
.+|+.+||+|+.-...+.+-..++|-+-+|++.++ ++ +.++++.+
T Consensus 75 ~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 75 DVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEH 121 (241)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh
Confidence 38999999999988888888889999999999998 54 66777654
No 143
>PRK07695 transcriptional regulator TenI; Provisional
Probab=79.74 E-value=9.1 Score=32.69 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.5
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++||+--|+++++|+.+++. .++||+-||++-++
T Consensus 149 ~ipvia~GGI~~~~~~~~~~-~Ga~gvav~s~i~~ 182 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLA-AGVSGIAVMSGIFS 182 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHH-cCCCEEEEEHHHhc
Confidence 48899999999999999986 78999999999876
No 144
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.64 E-value=3.2 Score=36.83 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=37.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
.+||.+||+++.-...+.+-..++|=+.||.+.++ ++ +.++.+.+
T Consensus 76 ~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 76 TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHc
Confidence 38999999999988888887889999999999997 66 45555543
No 145
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.28 E-value=1.9 Score=39.47 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+|++++++++.++.. .+++.+.-=|+|+++|+.+++. .++|.+-+|..-++
T Consensus 211 ~~~e~l~~~v~~~~~~---------~~~~~ieAsGgIt~~ni~~ya~-~GvD~IsvG~l~~s 262 (273)
T PRK05848 211 MSVEEIKEVVAYRNAN---------YPHVLLEASGNITLENINAYAK-SGVDAISSGSLIHQ 262 (273)
T ss_pred CCHHHHHHHHHHhhcc---------CCCeEEEEECCCCHHHHHHHHH-cCCCEEEeChhhcC
Confidence 3899999888865421 2457899999999999999865 89999999987664
No 146
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.20 E-value=3 Score=38.49 Aligned_cols=53 Identities=19% Similarity=0.082 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..+|+++++++..+|.. .+++.+.-=|++|++|+.+++. .+||.+-+|.--++
T Consensus 227 nm~~e~vk~av~~~~~~---------~~~v~ieaSGGI~~~ni~~yA~-tGvD~Is~galt~s 279 (289)
T PRK07896 227 NFPVWQTQEAVQRRDAR---------APTVLLESSGGLTLDTAAAYAE-TGVDYLAVGALTHS 279 (289)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHh-cCCCEEEeChhhcC
Confidence 45799999999987753 3567899999999999999877 78999999986654
No 147
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.00 E-value=3.6 Score=37.77 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+|++++++++.+++. + ..+++.+.--|+||++|+.+++. .+||.+-+|.--++
T Consensus 212 ~~e~l~~~v~~l~~~-----~--~~~~~~leaSGGI~~~ni~~yA~-tGvD~Is~galt~s 264 (278)
T PRK08385 212 TPEEIREVIEALKRE-----G--LRERVKIEVSGGITPENIEEYAK-LDVDVISLGALTHS 264 (278)
T ss_pred CHHHHHHHHHHHHhc-----C--cCCCEEEEEECCCCHHHHHHHHH-cCCCEEEeChhhcC
Confidence 799999999988753 0 02468899999999999999877 69999999986654
No 148
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=78.73 E-value=4.4 Score=36.21 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=34.8
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 244 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~I 244 (251)
+|+.+||+|+..+..+.+-..++|=+.+|.+.++ ++|.+-
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~ 115 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAA 115 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHH
Confidence 8999999999999988777789999999999998 765443
No 149
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=78.55 E-value=7.7 Score=35.21 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=43.5
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
-.+|..-| .+|+.++++++.+|.. .+++|.--|+||++|+.+++. .++||+-+|+...
T Consensus 202 aD~I~ld~---------~~~e~l~~~v~~i~~~----------~~i~i~asGGIt~~ni~~~a~-~Gad~Isvgal~~ 259 (269)
T cd01568 202 ADIIMLDN---------MSPEELKEAVKLLKGL----------PRVLLEASGGITLENIRAYAE-TGVDVISTGALTH 259 (269)
T ss_pred CCEEEECC---------CCHHHHHHHHHHhccC----------CCeEEEEECCCCHHHHHHHHH-cCCCEEEEcHHHc
Confidence 34666655 3568888777766531 358999999999999999875 8899999976443
No 150
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.53 E-value=69 Score=31.23 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=44.3
Q ss_pred EcccCccC-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 165 YEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 165 YEPvWAIG-tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
-| ..|=| ||...+..-+..+.+ +|+.+...++. ...+||+-.|++...-...-+-..+.||+.+|.+-+
T Consensus 183 vq-~EAGGH~g~~~~~~Llp~v~~-l~d~v~~~~~~--~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 183 VE-ADSGGHTDNRPLSVLLPTIIR-LRDELAARYGY--RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred Ec-ccCCCCCCCccHHhHHHHHHH-HHHHHhhcccc--CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 37 57777 455444444443333 34444443432 236999999999776666666667999999999755
No 151
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=78.47 E-value=9.7 Score=35.09 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 175 ~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-..+|++++++++.+++. ..++.+---|+||++|+.+++. .+||.+-+|.-
T Consensus 216 Dn~~~e~l~~av~~~~~~---------~~~~~leaSGGI~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSL---------APHCTLSLAGGINLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred CCCCHHHHHHHHHHhhcc---------CCCeEEEEECCCCHHHHHHHHh-cCCCEEEECcc
Confidence 356899999999887642 3457899999999999999887 68999977753
No 152
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=78.11 E-value=18 Score=32.81 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCCCCCeEEEEcccC-------------cc--CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-E
Q 025540 144 VAAQTKAIADRVSSWSNIVLAYEPVW-------------AI--GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR-I 207 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~iIAYEPvW-------------AI--GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~-i 207 (251)
+.++++..++.++...+.+++|+|.| .+ +.|..+||.++.++.+.||+. +++ |
T Consensus 162 l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~i 230 (287)
T cd01137 162 LDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKE-----------KVPAV 230 (287)
T ss_pred HHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHh-----------CCCEE
Confidence 44444444544432345689999988 23 468889999999999999864 355 5
Q ss_pred EEccCCCcccHHHHhcCCCCC
Q 025540 208 IYGGSVNGANCKELAAQPDVD 228 (251)
Q Consensus 208 lYGGSV~~~n~~~l~~~~~vD 228 (251)
++--..++.-+..++...++.
T Consensus 231 f~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 231 FVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred EEeCCCChHHHHHHHHHhCCc
Confidence 577778888888888887764
No 153
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.67 E-value=47 Score=28.93 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccc--Ccc-CCCCCCCHHHHH
Q 025540 108 EFVGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV--WAI-GTGKVATPAQAQ 183 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlC-iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPv--WAI-GtG~~a~~e~i~ 183 (251)
+.+.+-+..|.+.|...|.| .|-........+..+...+.++.+.+. .....+.|++||. |.. |+ -..|++++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~-A~~~gi~l~lE~~~~~~~~~~-~l~t~~~~~ 161 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADA-LDRIGLTLLIEPINSFDMPGF-FLTTTEQAL 161 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHH-HHhcCCEEEEEECCcccCCCC-hhcCHHHHH
Confidence 34556677788888887654 332100000000112222333333221 1134688999985 322 22 124566655
Q ss_pred HHHHHH
Q 025540 184 EVHFEL 189 (251)
Q Consensus 184 ~~~~~I 189 (251)
++++.+
T Consensus 162 ~li~~v 167 (254)
T TIGR03234 162 AVIDDV 167 (254)
T ss_pred HHHHHh
Confidence 555444
No 154
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=76.92 E-value=4.1 Score=36.69 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 71 KGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 71 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
-.|+|+.|.-..|+++.|+++++-=-| |.+ -...|+.+|++.|+.+|+ |.-+
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP 224 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM-IARP 224 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 459999999999999999999998666 443 455899999999999887 5544
No 155
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=76.73 E-value=11 Score=35.81 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCeEEEEcccCccCCCCC---CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 159 SNIVLAYEPVWAIGTGKV---ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~---a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
.-.+|.+=|++.-.|-.. ..++.++.+.+ . ..+|++-=|+++++|+.+++ ..+.||+-|+++
T Consensus 260 GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~--------~------~~iPv~AiGGI~~~ni~~l~-~~Ga~gVAvisa 324 (347)
T PRK02615 260 GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAK--------E------APIPWFAIGGIDKSNIPEVL-QAGAKRVAVVRA 324 (347)
T ss_pred CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHH--------h------CCCCEEEECCCCHHHHHHHH-HcCCcEEEEeHH
Confidence 346788999998776432 23444333222 1 23899999999999998866 468999999999
Q ss_pred cCc
Q 025540 236 SLK 238 (251)
Q Consensus 236 sl~ 238 (251)
-++
T Consensus 325 I~~ 327 (347)
T PRK02615 325 IMG 327 (347)
T ss_pred HhC
Confidence 885
No 156
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.64 E-value=3.1 Score=38.33 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=32.0
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc-hH-HHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PE-FIDI 244 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~I 244 (251)
++||++-|+|+ ++.+.+++...++||+.+|++.+. |. |.++
T Consensus 192 ~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 192 RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence 38999988885 566667776889999999999996 65 4444
No 157
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.21 E-value=2 Score=39.67 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=27.8
Q ss_pred ceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc-hH-HH
Q 025540 205 TRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-PE-FI 242 (251)
Q Consensus 205 i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~-~~-F~ 242 (251)
+||++-|.|+. +.+.+++...++||+.||++.+. |. |.
T Consensus 184 ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~ 224 (309)
T PF01207_consen 184 IPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFR 224 (309)
T ss_dssp SEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHC
T ss_pred ceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhh
Confidence 89999888865 55666677779999999999997 63 54
No 158
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=76.15 E-value=5.2 Score=34.53 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=37.3
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
++||+.+|.+.+..-.+.+...++||+++|...++ +.+.++++.+
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 48999999888887778888899999999999888 5666666543
No 159
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=76.12 E-value=12 Score=34.20 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=41.2
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
..+|..-|. .|+.+.+..+.+|.. ..++++.-=|+|+++|+.+++. .++||+.+|+-
T Consensus 204 aD~I~ld~~---------~p~~l~~~~~~~~~~---------~~~i~i~AsGGI~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 204 ADILQLDKF---------SPEELAELVPKLRSL---------APPVLLAAAGGINIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred CCEEEECCC---------CHHHHHHHHHHHhcc---------CCCceEEEECCCCHHHHHHHHH-cCCcEEEEChh
Confidence 346777664 566676666666532 1358999999999999999876 79999955543
No 160
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=75.41 E-value=26 Score=33.43 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+.-+.++.+.-|+++.+.. .+.++|+..|++...-...-+-..+.|++.+|++-+
T Consensus 233 ~~~ai~d~~~a~~~~~~e~g----~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 233 MATAIADVAAARRDYLDETG----GRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHH
Confidence 34455666666666655432 235999999999887766666667999999998744
No 161
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=75.40 E-value=3.6 Score=36.23 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=35.3
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
+||.+||+++..+..+.+...++|-+.+|.++++ ++ +.++++.+
T Consensus 74 ~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 74 IPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERY 119 (229)
T ss_dssp SEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHH
T ss_pred ccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHc
Confidence 8999999999999888888899999999999997 55 45666554
No 162
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=75.20 E-value=24 Score=29.39 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=70.4
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql~ 149 (251)
.|.|.+...-|+.-|+++|++-=+|.-.+ .|.....-+..|.++||.. ..|- ++. -..|.+
T Consensus 7 ~~q~~~~~~~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~~G~Yhy~~~-~~~-----------a~~qa~ 71 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLLVGAYHFARP-CAN-----------AEAQAD 71 (186)
T ss_pred CCCCCCCHHHHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCceEEEEEecC-CCC-----------HHHHHH
Confidence 47888999999999999999988887544 5667778899999999863 1222 111 234555
Q ss_pred HHHhccCC---CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 150 AIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 150 ~~l~~i~~---~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
-.++.+.. ..++++-+|..-.-+ ++....+.+....+.+.+.. ..-++||.+-
T Consensus 72 ~fi~~~~~~~~~~~~~lDvE~~~~~~-----~~~~~~~~~~~f~~~~~~~g-----g~~~~iY~~~ 127 (186)
T cd00599 72 NFVNTVPRDPGSLPLVLDVEDTGGGC-----SAAALAAWLNAFLNEVEALT-----GKKPIIYTSP 127 (186)
T ss_pred HHHHHccCcCCCCCeEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHH-----CCceEEEEcH
Confidence 56655542 456778888742111 33333333333333333332 2357899864
No 163
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=74.56 E-value=6.2 Score=35.59 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=39.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
+++|.-||+++..+..+-+...+++=+.+|.+.++ ++ +.++++.+
T Consensus 75 ~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~ 121 (241)
T COG0106 75 DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEY 121 (241)
T ss_pred CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHc
Confidence 48999999999999999998899999999999998 66 46666654
No 164
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=73.76 E-value=60 Score=28.21 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCcc--ccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEE
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF--VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWV 92 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~--~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~v 92 (251)
.+.+++.+.++.+.+.-. .-+++-.-.|. -.|..+.+....++.+||=.+-..+ .++...++|++++
T Consensus 19 ~~~~~~~~~~~a~~~gGi---~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--------~~~~a~~aGA~fi 87 (206)
T PRK09140 19 ITPDEALAHVGALIEAGF---RAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--------QVDRLADAGGRLI 87 (206)
T ss_pred CCHHHHHHHHHHHHHCCC---CEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--------HHHHHHHcCCCEE
Confidence 357888888887765322 23444433332 2344444443334677775554333 5788999999999
Q ss_pred EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccC
Q 025540 93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (251)
Q Consensus 93 iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIG 172 (251)
..+|... .=++.+.+.|+..+.=+ .|.+ |+...... .-+ +|..=|
T Consensus 88 vsp~~~~------------~v~~~~~~~~~~~~~G~-~t~~-------------E~~~A~~~---Gad-~vk~Fp----- 132 (206)
T PRK09140 88 VTPNTDP------------EVIRRAVALGMVVMPGV-ATPT-------------EAFAALRA---GAQ-ALKLFP----- 132 (206)
T ss_pred ECCCCCH------------HHHHHHHHCCCcEEccc-CCHH-------------HHHHHHHc---CCC-EEEECC-----
Confidence 9998744 23455667888666521 2221 22222221 112 222223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+ ....++.+++....+. .++|++-=|+|+++|+.+++. .++||+-+|++-.+
T Consensus 133 a-~~~G~~~l~~l~~~~~------------~~ipvvaiGGI~~~n~~~~~~-aGa~~vav~s~l~~ 184 (206)
T PRK09140 133 A-SQLGPAGIKALRAVLP------------PDVPVFAVGGVTPENLAPYLA-AGAAGFGLGSALYR 184 (206)
T ss_pred C-CCCCHHHHHHHHhhcC------------CCCeEEEECCCCHHHHHHHHH-CCCeEEEEehHhcc
Confidence 1 2345776654322221 248899999999999999887 59999999998764
No 165
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=72.96 E-value=41 Score=33.27 Aligned_cols=95 Identities=7% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccC---------------ccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce
Q 025540 142 DVVAAQTKAIADRVSSWSNIVLAYEPVW---------------AIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR 206 (251)
Q Consensus 142 ~~~~~Ql~~~l~~i~~~~~~iIAYEPvW---------------AIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ 206 (251)
+.+.++++..++.++..++.+++|+|.| .+..|..+|+.++.++.+.||+. +++
T Consensus 354 ~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~-----------~V~ 422 (479)
T TIGR03772 354 ERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENL-----------KVP 422 (479)
T ss_pred HHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCC
Confidence 3455555666665543346789999988 24578889999999999999863 466
Q ss_pred EEEccCCCccc---HHHHhcCCCCCEEEEcCccCc---hHHHHHHHH
Q 025540 207 IIYGGSVNGAN---CKELAAQPDVDGFLVGGASLK---PEFIDIIKS 247 (251)
Q Consensus 207 ilYGGSV~~~n---~~~l~~~~~vDG~LVG~asl~---~~F~~Ii~~ 247 (251)
+++--.-.+.+ +..++...++.=+-+=+-.+. ++|.++++.
T Consensus 423 ~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~~d~l~~~~~tY~~~M~~ 469 (479)
T TIGR03772 423 AVFLEPNLAARSTTLNEIADELGVRVCAIYGDTFDDDVTNYVDLMRF 469 (479)
T ss_pred EEEEeCCCCCchHHHHHHHHHcCCcEEeeecCCCCCccccHHHHHHH
Confidence 66655544333 567777777643222112232 356665543
No 166
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=72.77 E-value=56 Score=30.18 Aligned_cols=139 Identities=19% Similarity=0.130 Sum_probs=76.0
Q ss_pred cccHHHHHhCCCCEEEe-----Cchhhccc-ccc--ChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHH
Q 025540 78 EISAEMLVNLEIPWVIL-----GHSERRLI-LNE--LNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVA 145 (251)
Q Consensus 78 eiS~~mLkd~G~~~vii-----GHSERR~~-f~E--td~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~ 145 (251)
+=..+.||++|++.+-- .+.|-|+. +.. |-+..-+-++.|.+.|+.+ |+-.||+.+++.. ..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~------~l 216 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE------HL 216 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH------HH
Confidence 44568899999987653 34454544 333 6666678888999999863 3334688777621 12
Q ss_pred HHHHHHHhccCCCCCeE-EEEcccCccCCC----CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc-cHH
Q 025540 146 AQTKAIADRVSSWSNIV-LAYEPVWAIGTG----KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA-NCK 219 (251)
Q Consensus 146 ~Ql~~~l~~i~~~~~~i-IAYEPvWAIGtG----~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~-n~~ 219 (251)
..|+.+-........++ +-|-|. ||- .++++++.-++++..|-.+. +++-+-||=++-. ...
T Consensus 217 ~~l~~l~~~~~~~~~fIP~~f~p~---~tpl~~~~~~~~~e~l~~iA~~Rl~lp---------~~~~i~~~~~~~g~~~~ 284 (340)
T TIGR03699 217 ERIRELQDKTGGFTAFIPWTFQPG---NTELGKKRPATSTEYLKVLAISRIFLD---------NIPNIQASWVTQGKEVG 284 (340)
T ss_pred HHHHHhchhhCCeeEEEeecccCC---CCcccCCCCCCHHHHHHHHHHHHHcCC---------CCCcccCCccccChHHH
Confidence 22222111000111212 334452 553 34688998888888886642 2333556654443 222
Q ss_pred HHhc---CCCCCEEEEcC
Q 025540 220 ELAA---QPDVDGFLVGG 234 (251)
Q Consensus 220 ~l~~---~~~vDG~LVG~ 234 (251)
+++- ..+++|.++.+
T Consensus 285 ~~~l~~Gan~~~g~~~~~ 302 (340)
T TIGR03699 285 QLALHFGANDFGSTMLEE 302 (340)
T ss_pred HHHHhcCCccCCCccccc
Confidence 3333 44566677633
No 167
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=71.90 E-value=29 Score=31.61 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEc-cCCCcccHHHHh---cCCCCCEEEEcC
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYG-GSVNGANCKELA---AQPDVDGFLVGG 234 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYG-GSV~~~n~~~l~---~~~~vDG~LVG~ 234 (251)
.|.|+-.++++..++.. +.+++|+.| |+.+.+.+.+++ ...++||+++.-
T Consensus 51 Lt~eEr~~~~~~~~~~~--------~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEA--------KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred CCHHHHHHHHHHHHHHh--------CCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 47777777777666653 345888888 667777666654 467899999865
No 168
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=71.88 E-value=12 Score=33.90 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=41.4
Q ss_pred CeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
..+|...| .+|++++++++.+++ .+|+.-=|+|+++|+.+++. .++||+-+|.--
T Consensus 199 aDyI~ld~---------~~~e~lk~~v~~~~~------------~ipi~AsGGI~~~ni~~~a~-~Gvd~Isvgait 253 (265)
T TIGR00078 199 ADIIMLDN---------MKPEEIKEAVQLLKG------------RVLLEASGGITLDNLEEYAE-TGVDVISSGALT 253 (265)
T ss_pred CCEEEECC---------CCHHHHHHHHHHhcC------------CCcEEEECCCCHHHHHHHHH-cCCCEEEeCHHH
Confidence 45777766 356777777665431 27899999999999999875 889999996543
No 169
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=71.58 E-value=7.9 Score=36.13 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=31.6
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~ 246 (251)
++||++-|+| +++.+.+++. ++||+.||++.+. + -|.++.+
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~ 248 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDR 248 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHH
Confidence 5899998888 5566777765 5999999999997 5 4665543
No 170
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.47 E-value=52 Score=32.73 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 181 ~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-+.++.++.|+++.+ + +..++|+.-|+++..-+.-.+--.+.|.+++|+.
T Consensus 334 ai~~~~~a~~~~~~~-~----g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~ 383 (502)
T PRK07107 334 ALIEVAKARDEYFEE-T----GVYIPICSDGGIVYDYHMTLALAMGADFIMLGRY 383 (502)
T ss_pred HHHHHHHHHHHHHhh-c----CCcceEEEcCCCCchhHHHHHHHcCCCeeeeChh
Confidence 344455555444432 1 3458999999998877666565679999999984
No 171
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=71.22 E-value=4.7 Score=37.80 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=34.3
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
++||++-|.+ +++.+.+++...++|++.+|++.+. |+|..
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHH
Confidence 4899999998 6688999998889999999999997 77543
No 172
>PRK06267 hypothetical protein; Provisional
Probab=71.09 E-value=80 Score=29.60 Aligned_cols=137 Identities=19% Similarity=0.117 Sum_probs=76.6
Q ss_pred cccccHHHHHhCCCCE----EEeCchhhcccc--ccChHHHHHHHHHHHHCCCe--EEEEe--CCcHHHHhcCCcHHHHH
Q 025540 76 TGEISAEMLVNLEIPW----VILGHSERRLIL--NELNEFVGDKVAYALSQGLK--VIACV--GETLEQREAGSTMDVVA 145 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~----viiGHSERR~~f--~Etd~~i~~Kv~~al~~gl~--pIlCi--GE~~~~r~~g~~~~~~~ 145 (251)
.|-++...+...+... ...+|.+-+..+ +-+-+...+-++.|.++|+. +=+.+ ||+.+++.
T Consensus 115 ~G~~d~~~~~~~~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~--------- 185 (350)
T PRK06267 115 VGIIDFLNINLNEIEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIE--------- 185 (350)
T ss_pred cccCCHHHHhhccccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHH---------
Confidence 3445555555555543 445566655432 23566677888899999998 33444 66655431
Q ss_pred HHHHHHHhccCCCCCe-EEEEcccCccCCC---C-CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHH
Q 025540 146 AQTKAIADRVSSWSNI-VLAYEPVWAIGTG---K-VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCK 219 (251)
Q Consensus 146 ~Ql~~~l~~i~~~~~~-iIAYEPvWAIGtG---~-~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~ 219 (251)
++...+..+. ...+ +..|-|. =||. . +++++++-+++...|-.+ ++++|+-||-+ +-.+..
T Consensus 186 -~~l~~l~~l~-~d~v~~~~L~P~--pGTp~~~~~~~s~~e~lr~ia~~Rl~l---------P~~~I~~~~~~~~l~~~~ 252 (350)
T PRK06267 186 -KLLNLIEELD-LDRITFYSLNPQ--KGTIFENKPSVTTLEYMNWVSSVRLNF---------PKIKIITGTWVDKLTNIG 252 (350)
T ss_pred -HHHHHHHHcC-CCEEEEEeeeEC--CCCcCCCCCCCCHHHHHHHHHHHHHHC---------CCCCcchhhHhHhcchhh
Confidence 2222233222 1222 3345554 2662 2 368889888999888663 45677666642 223333
Q ss_pred HHhcCCCCCEE----EEcCc
Q 025540 220 ELAAQPDVDGF----LVGGA 235 (251)
Q Consensus 220 ~l~~~~~vDG~----LVG~a 235 (251)
. ....++||+ ++|.-
T Consensus 253 ~-~~~aGaN~i~~~p~~g~y 271 (350)
T PRK06267 253 P-LIMSGSNVITKFPLFSMY 271 (350)
T ss_pred H-HhhcCcceeeccchhccC
Confidence 3 345788999 66653
No 173
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.59 E-value=12 Score=34.24 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..+|++++++++.++ .++++.-=|+++++|+.+++. .++|++-+|.--++
T Consensus 217 ~~~~e~l~~~v~~~~------------~~i~leAsGGIt~~ni~~~a~-tGvD~Isvg~lt~s 266 (277)
T PRK05742 217 ELSLDDMREAVRLTA------------GRAKLEASGGINESTLRVIAE-TGVDYISIGAMTKD 266 (277)
T ss_pred CCCHHHHHHHHHHhC------------CCCcEEEECCCCHHHHHHHHH-cCCCEEEEChhhcC
Confidence 348999888876553 247899999999999999875 89999999986655
No 174
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=69.68 E-value=1.3 Score=38.07 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=36.7
Q ss_pred EEEEcccCccC-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 162 VLAYEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 162 iIAYEPvWAIG-tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
.+-+. ...| ||++.+.+.+.++.+.. ...|++.+|+++|+|..+.+......|+=|-+.
T Consensus 119 ~~LlD--~~~GgtG~~~dw~~~~~~~~~~-------------~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSG 178 (197)
T PF00697_consen 119 YFLLD--SGSGGTGKTFDWSLLKKIVESY-------------SPKPVILAGGLNPENVREAIRQVRPYGVDVSSG 178 (197)
T ss_dssp EEEEE--SSSTSSSS---GGGGCCCHHT--------------GTSTEEEESS--TTTHHHHHHHC--SEEEESGG
T ss_pred EEeEc--cCCCcCCcccCHHHhhhhhhhc-------------ccCcEEEEcCCChHHHHHHHHhcCceEEEeCCc
Confidence 33455 5555 99988777655333221 147999999999999999999888888877654
No 175
>PRK01060 endonuclease IV; Provisional
Probab=69.49 E-value=28 Score=30.80 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHH
Q 025540 108 EFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pI-lCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~ 186 (251)
+.+.+-++.|.+.|-..| ++.|-...........+.+.+.|+.+++ ....+.|+.||.|.-++....+++++.++.
T Consensus 89 ~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~---~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 89 DFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALD---KTQGVTIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHh---cCCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 345556666667777543 3344321100000122233334443332 134588999998866554445777776655
Q ss_pred HHH
Q 025540 187 FEL 189 (251)
Q Consensus 187 ~~I 189 (251)
+.+
T Consensus 166 ~~v 168 (281)
T PRK01060 166 DGV 168 (281)
T ss_pred Hhc
Confidence 544
No 176
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=68.86 E-value=4.9 Score=35.87 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=23.2
Q ss_pred EccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 209 YGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 209 YGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
-||-.+|..+ .|+-|.++||++||+.-.+
T Consensus 215 aGGvaTPADA-ALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 215 AGGVATPADA-ALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred ccCcCChhHH-HHHHHcCCCeEEecccccc
Confidence 3555566555 7888999999999999887
No 177
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.59 E-value=4.8 Score=36.32 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=77.0
Q ss_pred ccCCccccccc---cHHHHHhCC-CCEE---EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcH
Q 025540 69 VKKGGAFTGEI---SAEMLVNLE-IPWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM 141 (251)
Q Consensus 69 ~~~~Ga~TGei---S~~mLkd~G-~~~v---iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~ 141 (251)
++..|++|-|= .++|.+|++ .+|+ ++|.. +.++-+.-+++ +-.+...+.|+++.-=+-...
T Consensus 67 PNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~--~~L~PD~~etl-~Aae~Lv~eGF~VlPY~~~D~--------- 134 (247)
T PF05690_consen 67 PNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDD--KTLLPDPIETL-KAAEILVKEGFVVLPYCTDDP--------- 134 (247)
T ss_dssp EE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-T--TT--B-HHHHH-HHHHHHHHTT-EEEEEE-S-H---------
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC--CCcCCChhHHH-HHHHHHHHCCCEEeecCCCCH---------
Confidence 56889999884 678888884 5665 45553 44555444333 556667799999875444443
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccC--ccCCCCCCC-HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccH
Q 025540 142 DVVAAQTKAIADRVSSWSNIVLAYEPVW--AIGTGKVAT-PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANC 218 (251)
Q Consensus 142 ~~~~~Ql~~~l~~i~~~~~~iIAYEPvW--AIGtG~~a~-~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~ 218 (251)
++-++|.. +. -..+ -+| -||||+-.. +.- .+.|++.+ ++||+-.+++..--.
T Consensus 135 -v~akrL~d----~G--caav----MPlgsPIGSg~Gi~n~~~----l~~i~~~~----------~vPvIvDAGiG~pSd 189 (247)
T PF05690_consen 135 -VLAKRLED----AG--CAAV----MPLGSPIGSGRGIQNPYN----LRIIIERA----------DVPVIVDAGIGTPSD 189 (247)
T ss_dssp -HHHHHHHH----TT---SEB----EEBSSSTTT---SSTHHH----HHHHHHHG----------SSSBEEES---SHHH
T ss_pred -HHHHHHHH----CC--CCEE----EecccccccCcCCCCHHH----HHHHHHhc----------CCcEEEeCCCCCHHH
Confidence 34444443 21 1111 123 389999864 433 33444431 489999999988777
Q ss_pred HHHhcCCCCCEEEEcCccCc-hHHHHHHH
Q 025540 219 KELAAQPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 219 ~~l~~~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
+..+-+.+.||+||..|--+ .+-..+.+
T Consensus 190 aa~AMElG~daVLvNTAiA~A~dPv~MA~ 218 (247)
T PF05690_consen 190 AAQAMELGADAVLVNTAIAKAKDPVAMAR 218 (247)
T ss_dssp HHHHHHTT-SEEEESHHHHTSSSHHHHHH
T ss_pred HHHHHHcCCceeehhhHHhccCCHHHHHH
Confidence 78888899999999998765 44444433
No 178
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=68.47 E-value=72 Score=26.96 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=69.5
Q ss_pred ccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE-E---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-I---ACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 75 ~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p-I---lCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
|.|.|....||..|+++|+|==+|...+ .|.....-++.|.++||.. + .|-..+ . .+|.+.
T Consensus 11 ~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~-~-----------~~qA~~ 75 (191)
T cd06413 11 HQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRGAYHFFTFCRS-G-----------AEQAAN 75 (191)
T ss_pred CCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCceEEEEEEecCCC-H-----------HHHHHH
Confidence 7789999999999999999988776554 5667778889999999963 1 232211 1 134444
Q ss_pred HHhccCC---CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 151 ~l~~i~~---~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
.++.+.. .-++++-+|.. -......+..++.+.++...+.+.+..| .-++||.+.
T Consensus 76 f~~~~~~~~~~~~~~lD~E~~--~~~~~~~~~~~~~~~~~~f~~~v~~~~G-----~~~~iY~~~ 133 (191)
T cd06413 76 FIRNVPKDPGALPPVVDVEWN--GNSATCPSAEEVLAELQVFLDALEAHYG-----KRPIIYTTY 133 (191)
T ss_pred HHHhcCCCCCcCCeEEEEEec--CCCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCeEEEeCH
Confidence 5554432 22567888852 1111124555544333333333433222 357899873
No 179
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.30 E-value=20 Score=32.83 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..++++++++++.++ ..+++.-=|+|+++|+.+++. .++||+-+|.--++
T Consensus 216 ~~~~e~l~~~~~~~~------------~~i~i~AiGGIt~~ni~~~a~-~Gvd~IAvg~l~~s 265 (277)
T PRK08072 216 NRTPDEIREFVKLVP------------SAIVTEASGGITLENLPAYGG-TGVDYISLGFLTHS 265 (277)
T ss_pred CCCHHHHHHHHHhcC------------CCceEEEECCCCHHHHHHHHH-cCCCEEEEChhhcC
Confidence 367888887776543 236788899999999999877 78999999986654
No 180
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=68.25 E-value=7 Score=35.24 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 174 GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 174 G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
..+||++-=.-+...|++.-.+.+ +|+-+||+|+.-.....+-..+.|=+-|.++++. |+|.+
T Consensus 51 DItAs~~gr~~~~~vv~r~A~~vf-------iPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~ 114 (256)
T COG0107 51 DITASSEGRETMLDVVERVAEQVF-------IPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELIT 114 (256)
T ss_pred ecccccccchhHHHHHHHHHhhce-------eeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHH
Confidence 456776664555555555433333 9999999999988888888899999999999998 88754
No 181
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=68.17 E-value=8.1 Score=35.22 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-----hHH-HHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-----PEF-IDIIKSA 248 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-----~~F-~~Ii~~~ 248 (251)
++|.|||+++.+.+..++. .++|=+.||++.++ ++| .++++.+
T Consensus 84 ~~vqvGGGIR~e~i~~~l~-~Ga~rViigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 84 GGLQVGGGVNSENAMSYLD-AGASHVIVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred CCEEEeCCccHHHHHHHHH-cCCCEEEEchHHHhCCCCCHHHHHHHHHHh
Confidence 7999999999877766665 89999999999886 554 4555544
No 182
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.07 E-value=98 Score=27.96 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=34.4
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~~~ 248 (251)
++||+.-|+| +++.+.+++. .+.|++.+|++.+. + -|.+|.+.+
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHHHH
Confidence 4899988887 6788888886 78999999999996 5 456665544
No 183
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=66.49 E-value=8.7 Score=36.26 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 179 ~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
|++..+.+..+|+.+.+.. .+.+.|..=|+++++|+.+++.. ||.+-||+.-..
T Consensus 240 ~g~l~~~v~~vr~~ld~~g----~~~v~IeaSGgI~~~ni~~ya~~--vD~isvGs~~~~ 293 (343)
T PRK08662 240 RGNFRKIVREVRWTLDIRG----YEHVKIFVSGGLDPERIRELRDV--VDGFGVGTYISF 293 (343)
T ss_pred CccHHHHHHHHHHHHHhcC----CCCeEEEEeCCCCHHHHHHHHHh--CCEEEcCccccC
Confidence 5888888888888775431 13578999999999999999987 999999987554
No 184
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=66.40 E-value=85 Score=28.92 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCCCCCeEEEEcccCc---------------cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceE-
Q 025540 144 VAAQTKAIADRVSSWSNIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRI- 207 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~iIAYEPvWA---------------IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~i- 207 (251)
+..+++..++.. .++.++.|.|.|. +.+|..+|+.++.++.+.||+. ++++
T Consensus 190 l~~~~~~~l~~~--~~~~~i~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~I 256 (311)
T PRK09545 190 TDKQIGNQLAPV--KGKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQ-----------KATCV 256 (311)
T ss_pred HHHHHHHHhhcc--CCCcEEEECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCCEE
Confidence 334444444432 2356789999883 4578889999999999999863 3554
Q ss_pred EEccCCCcccHHHHhcCCCCC
Q 025540 208 IYGGSVNGANCKELAAQPDVD 228 (251)
Q Consensus 208 lYGGSV~~~n~~~l~~~~~vD 228 (251)
++-=..++..+..+..+.++.
T Consensus 257 f~e~~~~~~~~~~la~e~g~~ 277 (311)
T PRK09545 257 FAEPQFRPAVIESVAKGTSVR 277 (311)
T ss_pred EecCCCChHHHHHHHHhcCCe
Confidence 456667888888888877754
No 185
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=65.96 E-value=7.1 Score=37.81 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccc---c-----CcceEEEccCCCcccHHHHhc-----CCCCC--EEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEI---A-----AATRIIYGGSVNGANCKELAA-----QPDVD--GFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~---~-----~~i~ilYGGSV~~~n~~~l~~-----~~~vD--G~LVG~asl~ 238 (251)
+.-+..++....|+.|.+.||..+ + +.++|+||++++.+-+.+++. --.+| ++-||+.-+.
T Consensus 292 DSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~L~~~G~~~dNi~fGvGt~l~q 367 (407)
T cd01569 292 DSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGLLQ 367 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHHHHHCCCccccceEecCcccee
Confidence 444445556667788877654432 2 589999999999999997554 34589 9999998764
No 186
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=65.67 E-value=23 Score=34.80 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCC---EEEEcCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVD---GFLVGGA 235 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vD---G~LVG~a 235 (251)
.-.+|++-|++.-.|-....|-. .+.+|.+.. ..++||+-=|+++++|+.+++. .++| |+-|+++
T Consensus 410 gadyi~~gpif~t~tk~~~~~~g----~~~~~~~~~-------~~~~Pv~aiGGI~~~~~~~~~~-~G~~~~~gvav~~~ 477 (502)
T PLN02898 410 GADYIGCGGVFPTNTKANNKTIG----LDGLREVCE-------ASKLPVVAIGGISASNAASVME-SGAPNLKGVAVVSA 477 (502)
T ss_pred CCCEEEECCeecCCCCCCCCCCC----HHHHHHHHH-------cCCCCEEEECCCCHHHHHHHHH-cCCCcCceEEEEeH
Confidence 45789999999876632121111 223333321 1248999999999999988765 4666 9999999
Q ss_pred cCc
Q 025540 236 SLK 238 (251)
Q Consensus 236 sl~ 238 (251)
-++
T Consensus 478 i~~ 480 (502)
T PLN02898 478 LFD 480 (502)
T ss_pred Hhc
Confidence 886
No 187
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=65.61 E-value=50 Score=29.92 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=67.5
Q ss_pred HhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 025540 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (251)
Q Consensus 85 kd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIA 164 (251)
+.+|++.|++=-+ .+ +++.+..=+..|.+.||.|++=|-...| ++.++. ...-+|.
T Consensus 128 ~~~GADaVLLI~~----~L--~~~~l~~l~~~a~~lGle~lVEVh~~~E--------------l~~al~----~~a~iiG 183 (254)
T PF00218_consen 128 RAAGADAVLLIAA----IL--SDDQLEELLELAHSLGLEALVEVHNEEE--------------LERALE----AGADIIG 183 (254)
T ss_dssp HHTT-SEEEEEGG----GS--GHHHHHHHHHHHHHTT-EEEEEESSHHH--------------HHHHHH----TT-SEEE
T ss_pred HHcCCCEeehhHH----hC--CHHHHHHHHHHHHHcCCCeEEEECCHHH--------------HHHHHH----cCCCEEE
Confidence 4679999887443 12 2344677888999999999997765432 223343 1222222
Q ss_pred EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 165 YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.= -|-..|-.+ +++...++...|. +++.++--++++.-.....+...++||+|||.+-++
T Consensus 184 IN-nRdL~tf~v-d~~~~~~l~~~ip------------~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 184 IN-NRDLKTFEV-DLNRTEELAPLIP------------KDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp EE-SBCTTTCCB-HTHHHHHHHCHSH------------TTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred Ee-CccccCccc-ChHHHHHHHhhCc------------cceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 21 122333321 2344333333333 236688888888777778888899999999998776
No 188
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.17 E-value=1e+02 Score=29.04 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=81.2
Q ss_pred cccccHHHHHhCCCCEEEe---Cchhhc-cccccChHHHHHHHHHHHHCCCeEEEE---e--CCcHH-H-HhcCCcHHHH
Q 025540 76 TGEISAEMLVNLEIPWVIL---GHSERR-LILNELNEFVGDKVAYALSQGLKVIAC---V--GETLE-Q-REAGSTMDVV 144 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~vii---GHSERR-~~f~Etd~~i~~Kv~~al~~gl~pIlC---i--GE~~~-~-r~~g~~~~~~ 144 (251)
....|.+.++++|++.|-+ =|++.- .+-.+..+.+.+=...|.+.||.-++= - |.... . +-+....+.+
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V 186 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKV 186 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHH
Confidence 4566889999999998755 122200 000123345677778999999998772 1 11110 0 0011234455
Q ss_pred HHHHHHHHh-ccCCCCCeEEEEccc------CccCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEE-ccCCCc
Q 025540 145 AAQTKAIAD-RVSSWSNIVLAYEPV------WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIY-GGSVNG 215 (251)
Q Consensus 145 ~~Ql~~~l~-~i~~~~~~iIAYEPv------WAIGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilY-GGSV~~ 215 (251)
..-++...+ .+ .-.++=-|++ +-.+.|..+ +.+++.+ ..++... +..+|++| ||+++.
T Consensus 187 ~~a~r~~~~~el---GaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~---~f~~~~~-------a~~~P~vvlsgG~~~ 253 (340)
T PRK12858 187 IKTMEEFSKPRY---GVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFK---LFREQSD-------ATDLPFIFLSAGVSP 253 (340)
T ss_pred HHHHHHHhhhcc---CCeEEEeeCCCCcccccccccccccccHHHHHH---HHHHHHh-------hCCCCEEEECCCCCH
Confidence 555554442 12 2234433333 333444333 4444443 3333322 23478887 999976
Q ss_pred ccHHH---HhcCCCC--CEEEEcCccCc
Q 025540 216 ANCKE---LAAQPDV--DGFLVGGASLK 238 (251)
Q Consensus 216 ~n~~~---l~~~~~v--DG~LVG~asl~ 238 (251)
+...+ .+...+. .|+++|++.++
T Consensus 254 ~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 254 ELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred HHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 64433 3446777 99999999987
No 189
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.99 E-value=62 Score=28.45 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=48.5
Q ss_pred HHHHHhCCCCEEEeC--chhhc-cc-------cccChHHHHHHHHHHHHCCCeEEEEe-CCcHHHHhcCCcHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILG--HSERR-LI-------LNELNEFVGDKVAYALSQGLKVIACV-GETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 81 ~~mLkd~G~~~viiG--HSERR-~~-------f~Etd~~i~~Kv~~al~~gl~pIlCi-GE~~~~r~~g~~~~~~~~Ql~ 149 (251)
.+.+++.|.+.+-++ |.-.. .+ ..+.-+.+.+-+..|...|...|+.. |-...........+.+.+-|+
T Consensus 53 ~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (275)
T PRK09856 53 KALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLS 132 (275)
T ss_pred HHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHH
Confidence 456779999876543 21000 00 11223456677788999999986542 211000000011112222222
Q ss_pred HHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHH
Q 025540 150 AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHF 187 (251)
Q Consensus 150 ~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~ 187 (251)
.+.+.. .-..+.||+||..--.+....+++++.++++
T Consensus 133 ~l~~~a-~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 133 ELCEYA-ENIGMDLILEPLTPYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHH-HHcCCEEEEecCCCCcccccCCHHHHHHHHH
Confidence 222211 1357899999962111122234555444443
No 190
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.96 E-value=65 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.5
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++||+.-|+++ ++.+.+++....+|.+.+|++.+- |+|.
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 329 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLP 329 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHH
Confidence 47999999985 678999999889999999999997 7653
No 191
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=64.88 E-value=8.5 Score=35.10 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=26.5
Q ss_pred cceEEEccCCCcccHHHHhcCC--CCCEEEEcCcc
Q 025540 204 ATRIIYGGSVNGANCKELAAQP--DVDGFLVGGAS 236 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~--~vDG~LVG~as 236 (251)
++||+|.|+|+.-+...-+... ++.|+.||.|-
T Consensus 207 ~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 207 PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 4899999999987766554443 79999999996
No 192
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.24 E-value=13 Score=33.23 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=32.9
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
.|+.+||+|+.-...+.+...++|=+.||.++++ ++|.+=+.
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~ 116 (241)
T PRK14114 74 EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLK 116 (241)
T ss_pred CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHH
Confidence 5899999999855555555589999999999998 77765443
No 193
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=64.24 E-value=1e+02 Score=28.68 Aligned_cols=151 Identities=19% Similarity=0.109 Sum_probs=82.8
Q ss_pred HHHHHhCCCCEEEeCc-----hhhccccc---cChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGH-----SERRLILN---ELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQT 148 (251)
Q Consensus 81 ~~mLkd~G~~~viiGH-----SERR~~f~---Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql 148 (251)
...||++|++.+..+. .|.|+... -+-+..-+-++.|.++|+.+ |+=.||+.++|. ++... .++|
T Consensus 144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~--~~l~~-lr~l 220 (343)
T TIGR03551 144 LKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWV--DHLLI-LREI 220 (343)
T ss_pred HHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHH--HHHHH-HHHh
Confidence 4568999999876332 34444333 25566678899999999975 444578877663 11111 1112
Q ss_pred HHHHhccCCCCCeE-EEEcccCccCCCC--------CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHH
Q 025540 149 KAIADRVSSWSNIV-LAYEPVWAIGTGK--------VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCK 219 (251)
Q Consensus 149 ~~~l~~i~~~~~~i-IAYEPvWAIGtG~--------~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~ 219 (251)
+.--.+ ...++ +-|-|. ||.. .+++++.-.+++..|=.+-. .+.-+-||.++-+...
T Consensus 221 ~~~~~~---~~~~iP~~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~--------~~~~i~a~~~~l~~~~ 286 (343)
T TIGR03551 221 QEETGG---FTEFVPLPFVHY---NAPLYLKGMARPGPTGREDLKVHAIARILLHG--------LIDNIQASWVKLGKKL 286 (343)
T ss_pred hHHhCC---eeEEEeccccCC---CCccccccCCCCCCCHHHHHHHHHHHHHhCCC--------cccCeeccccccCHHH
Confidence 211111 11222 333343 5542 25788888888888865421 1334566665554331
Q ss_pred -HHh---cCCCCCEEEEc-------Cc----cCc-hHHHHHHHHH
Q 025540 220 -ELA---AQPDVDGFLVG-------GA----SLK-PEFIDIIKSA 248 (251)
Q Consensus 220 -~l~---~~~~vDG~LVG-------~a----sl~-~~F~~Ii~~~ 248 (251)
.++ ...+++|.++. |+ .++ +++..+|+.+
T Consensus 287 ~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~ 331 (343)
T TIGR03551 287 AQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDA 331 (343)
T ss_pred HHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHc
Confidence 322 24678888866 11 123 5667776654
No 194
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.17 E-value=14 Score=29.05 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
...+.+.+.++.+|+. . .++++++.||...++.. +.+.+.++|+++=+|.+.+
T Consensus 62 ~~~~~~~~~~~~L~~~----~----~~~i~i~~GG~~~~~~~-~~~~~~G~d~~~~~~~~~~ 114 (122)
T cd02071 62 GHMTLFPEVIELLREL----G----AGDILVVGGGIIPPEDY-ELLKEMGVAEIFGPGTSIE 114 (122)
T ss_pred hhHHHHHHHHHHHHhc----C----CCCCEEEEECCCCHHHH-HHHHHCCCCEEECCCCCHH
Confidence 3455555555555543 1 23689999998765554 5566688999999998876
No 195
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=64.01 E-value=14 Score=32.84 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH-HHHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 248 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~-F~~Ii~~~ 248 (251)
.|+.+||+|+.....+.+...++|=+.||...++ ++ +.++++.+
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~ 119 (232)
T PRK13586 74 DWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREI 119 (232)
T ss_pred CCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHh
Confidence 4899999999954444444579999999999998 65 45566654
No 196
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=63.93 E-value=89 Score=28.41 Aligned_cols=95 Identities=7% Similarity=0.037 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHH----------------HHHHHHhcCCccccCc
Q 025540 141 MDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFE----------------LRKWLLANTSPEIAAA 204 (251)
Q Consensus 141 ~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~----------------IR~~l~~~~~~~~~~~ 204 (251)
.+.+.+-.+.+.+..+ -+ ++.|-. ||...+++.+.+..+. +++.+. .. .++
T Consensus 115 ~~~i~~~f~~v~~a~~--~p-vilYn~-----~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~~~~~~-~~----~~~ 181 (296)
T TIGR03249 115 QEGLYAHVEAVCESTD--LG-VIVYQR-----DNAVLNADTLERLADRCPNLVGFKDGIGDMEQMIEITQ-RL----GDR 181 (296)
T ss_pred HHHHHHHHHHHHhccC--CC-EEEEeC-----CCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-Hc----CCC
Confidence 4455555566555332 24 455862 5777788888776542 222221 11 235
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHHh
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 249 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~~ 249 (251)
..|+.|-..........+. .+.||+.-|-+.+- +.+.+|.+.+.
T Consensus 182 ~~v~~G~~~~d~~~~~~~~-~Ga~G~is~~~n~~P~~~~~~~~~~~ 226 (296)
T TIGR03249 182 LGYLGGMPTAEVTAPAYLP-LGVTSYSSAIFNFIPHIARAFYEALR 226 (296)
T ss_pred eEEEeCCCcchhhHHHHHh-CCCCEEEecHHHhhHHHHHHHHHHHH
Confidence 6677764444444444333 48899998888776 56777776653
No 197
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=63.61 E-value=34 Score=31.13 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHH
Q 025540 106 LNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 185 (251)
Q Consensus 106 td~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~ 185 (251)
+++.+..=+..|.+.||.|++=|=... .+. .+++ ...-+|.+==.=. +.-..+.+.-.+.
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEVh~~e----------El~----rAl~----~ga~iIGINnRdL--~tf~vdl~~t~~l 200 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEVHNEE----------ELE----RALK----LGAKIIGINNRDL--TTLEVDLETTEKL 200 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEECCHH----------HHH----HHHh----CCCCEEEEeCCCc--chheecHHHHHHH
Confidence 455677888999999999999766432 222 3333 1111221100000 1111234443333
Q ss_pred HHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 186 HFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 186 ~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
...++ .+.-++--.+++.-.....+...++||+|||.+=++ ++-.+
T Consensus 201 a~~~p------------~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 201 APLIP------------KDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEE 247 (254)
T ss_pred HhhCC------------CCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHH
Confidence 33333 124455556666444446677789999999999887 44333
No 198
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=62.99 E-value=9.7 Score=37.58 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCcccc--------CcceEEEccCCCcccHHHHhc----C---CCCCEEEEcCccCc
Q 025540 183 QEVHFELRKWLLANTSPEIA--------AATRIIYGGSVNGANCKELAA----Q---PDVDGFLVGGASLK 238 (251)
Q Consensus 183 ~~~~~~IR~~l~~~~~~~~~--------~~i~ilYGGSV~~~n~~~l~~----~---~~vDG~LVG~asl~ 238 (251)
.++....++.|.+.||...+ ++++|+||++++.+-+.+|+. + .++|++-||+.-+.
T Consensus 305 ~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~~L~~~G~~a~n~~fGvGt~l~q 375 (470)
T PHA02594 305 VDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILTRMKENGFASENVAFGMGGGLLQ 375 (470)
T ss_pred HHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHHHHHHCCCCCCcceEecCcccee
Confidence 33334445556555553332 689999999999999999762 2 35679999998664
No 199
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=62.71 E-value=35 Score=28.61 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=40.1
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
.-.++.+-|++.--|-...+|--... ++++... -.+||+-=|+++++|+.++. ..++||+-+-+|
T Consensus 115 g~dYv~~gpvf~T~sk~~~~~~g~~~----l~~~~~~-------~~~pv~AlGGI~~~~i~~l~-~~Ga~gvAvi~a 179 (180)
T PF02581_consen 115 GADYVFLGPVFPTSSKPGAPPLGLDG----LREIARA-------SPIPVYALGGITPENIPELR-EAGADGVAVISA 179 (180)
T ss_dssp TTSEEEEETSS--SSSSS-TTCHHHH----HHHHHHH-------TSSCEEEESS--TTTHHHHH-HTT-SEEEESHH
T ss_pred CCCEEEECCccCCCCCccccccCHHH----HHHHHHh-------CCCCEEEEcCCCHHHHHHHH-HcCCCEEEEEee
Confidence 34689999999877644444433343 3333221 23899999999999998866 589999988764
No 200
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=62.71 E-value=1.5e+02 Score=28.67 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=67.5
Q ss_pred ccHHHHHhCCCCEEEeC----chhhccccc--cChHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHH
Q 025540 79 ISAEMLVNLEIPWVILG----HSERRLILN--ELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 79 iS~~mLkd~G~~~viiG----HSERR~~f~--Etd~~i~~Kv~~al~~gl~pI-lC--iGE~~~~r~~g~~~~~~~~Ql~ 149 (251)
=-.+.|+++|++.+-+| +.+-++.++ -+.+.+.+.++.+.+.|+..| +. +|=+ |+|.+.+.+-++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------gqt~e~~~~tl~ 226 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------HQTVESFRETLD 226 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------CCCHHHHHHHHH
Confidence 34567899999999999 333333332 356677889999999998632 22 2422 345555555565
Q ss_pred HHHhccCCCCCeE-EEE--cccC------ccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 150 AIADRVSSWSNIV-LAY--EPVW------AIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 150 ~~l~~i~~~~~~i-IAY--EPvW------AIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
.+++ +. .+.+. ..| .| | .||....+++++..++.+.+.+.|.+.
T Consensus 227 ~~~~-l~-p~~i~~y~l~~~p-~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 227 KVIA-LS-PDRIAVFGYAHVP-SRRKNQRLIDEAALPDAEERLRQARAVADRLLAA 279 (453)
T ss_pred HHHh-cC-CCEEEEecccccc-chhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHC
Confidence 5544 21 12221 122 23 3 356666778888888999888888754
No 201
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=62.66 E-value=17 Score=32.87 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=82.8
Q ss_pred EEcCccccHHHHHhhcCCCceEeeecccccCCcc--cccc------ccHHHHHhCCCCEEEeCchhhccccccChHHHHH
Q 025540 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGA--FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVGD 112 (251)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga--~TGe------iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~ 112 (251)
.+.|++-.+..+.+.+.-++.+ |=....|- ||-+ -...+++++|++.+.+|=--. -++-|....+
T Consensus 35 GlTPS~g~i~~~~~~~~ipv~v----MIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~---dg~vD~~~~~ 107 (248)
T PRK11572 35 GLTPSLGVLKSVRERVTIPVHP----IIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDV---DGHVDMPRMR 107 (248)
T ss_pred CcCCCHHHHHHHHHhcCCCeEE----EEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC---CCCcCHHHHH
Confidence 4778888888887754312111 11112232 2222 256788899999999997643 2345655555
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHH
Q 025540 113 KVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 190 (251)
Q Consensus 113 Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~--~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR 190 (251)
++..+. .++...+ -+..|.+..|.++ ++.+- ...++. =+|..++ +.+-...|+
T Consensus 108 ~Li~~a-~~~~vTF-----------HRAfD~~~d~~~a-l~~l~~lG~~rIL---------TSGg~~~---a~~g~~~L~ 162 (248)
T PRK11572 108 KIMAAA-GPLAVTF-----------HRAFDMCANPLNA-LKQLADLGVARIL---------TSGQQQD---AEQGLSLIM 162 (248)
T ss_pred HHHHHh-cCCceEE-----------echhhccCCHHHH-HHHHHHcCCCEEE---------CCCCCCC---HHHHHHHHH
Confidence 555554 4665554 1233333333322 22111 122321 1355555 445556666
Q ss_pred HHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEE
Q 025540 191 KWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGF 230 (251)
Q Consensus 191 ~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~ 230 (251)
+.+... ....|+-||+|+++|+.++. ..++.-+
T Consensus 163 ~lv~~a------~~~~Im~GgGV~~~Nv~~l~-~tG~~~~ 195 (248)
T PRK11572 163 ELIAAS------DGPIIMAGAGVRLSNLHKFL-DAGVREV 195 (248)
T ss_pred HHHHhc------CCCEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence 655432 22339999999999999995 4666544
No 202
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=62.43 E-value=9.3 Score=34.52 Aligned_cols=80 Identities=26% Similarity=0.262 Sum_probs=53.6
Q ss_pred eeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHH
Q 025540 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYA 117 (251)
Q Consensus 38 ~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~a 117 (251)
+-+-+.|+...+....+. .+ -..|+ ..-.|+|+-|.--.|+++.|+++++-=-| |++ --...|+.+|
T Consensus 153 ~~~RvLP~~~~l~~~~~~---G~--~~~~i-ia~~gPfs~e~n~al~~~~~i~~lVtK~S------G~~-Gg~~eKi~AA 219 (256)
T TIGR00715 153 VFVRVLPYPQALAQALKL---GF--PSDRI-IAMRGPFSEELEKALLREYRIDAVVTKAS------GEQ-GGELEKVKAA 219 (256)
T ss_pred EEEEECCCchhhHHHHHc---CC--ChhcE-EEEeCCCCHHHHHHHHHHcCCCEEEEcCC------CCc-cchHHHHHHH
Confidence 445555666666654432 11 12222 24679999999999999999999997444 222 0234799999
Q ss_pred HHCCCeEEEEeCCc
Q 025540 118 LSQGLKVIACVGET 131 (251)
Q Consensus 118 l~~gl~pIlCiGE~ 131 (251)
++.|+.+|+ |.-+
T Consensus 220 ~~lgi~viv-I~RP 232 (256)
T TIGR00715 220 EALGINVIR-IARP 232 (256)
T ss_pred HHcCCcEEE-EeCC
Confidence 999999887 4544
No 203
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.20 E-value=18 Score=29.51 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-----cccHHHHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-----GANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-----~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+.+...++++.+.+|+.. ..+++|+.||+.. +.-..+-+...++|.++-+|..++
T Consensus 65 ~~~~~~~~~~~~~L~~~~--------~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~ 124 (137)
T PRK02261 65 GHGEIDCRGLREKCIEAG--------LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPE 124 (137)
T ss_pred ccCHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHH
Confidence 356777787777777541 2358999999983 233345677788999999998765
No 204
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=61.73 E-value=46 Score=29.31 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHH
Q 025540 107 NEFVGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 185 (251)
Q Consensus 107 d~~i~~Kv~~al~~gl~pIlC-iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~ 185 (251)
-+.+.+-+..|.+.|...|++ .|-.. .....+..+.+.+-++.+.+ ....+.|+.|+.+--++-...+++++.++
T Consensus 83 ~~~l~~~i~~A~~lGa~~vv~h~g~~~-~~~~e~~~~~~~~~l~~l~~---~~~gv~l~lEn~~~~~~~~~~~~~~~~~l 158 (273)
T smart00518 83 IERLIDEIKRCEELGIKALVFHPGSYL-KQSKEEALNRIIESLNEVID---ETKGVVILLETTAGKGSQIGSTFEDLKEI 158 (273)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHHHHHh---ccCCcEEEEeccCCCCCccCCCHHHHHHH
Confidence 344556677777778765554 33210 00000111222223333332 12457788888765554444577777777
Q ss_pred HHHHH
Q 025540 186 HFELR 190 (251)
Q Consensus 186 ~~~IR 190 (251)
.+.++
T Consensus 159 l~~v~ 163 (273)
T smart00518 159 IDLIK 163 (273)
T ss_pred HHhcC
Confidence 76665
No 205
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=61.58 E-value=85 Score=28.61 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=25.2
Q ss_pred cceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccCc
Q 025540 204 ATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 204 ~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl~ 238 (251)
++||+--|+|... .+...+ ..+.||+.||+.-|.
T Consensus 227 ~ipvia~GGI~~~~d~~kal-~lGAd~V~ig~~~l~ 261 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKAL-ALGADAVLIGRPFLY 261 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 4788888888554 444444 589999999998764
No 206
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=61.57 E-value=1.3e+02 Score=27.29 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=65.2
Q ss_pred HhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 025540 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (251)
Q Consensus 85 kd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIA 164 (251)
+.+|++.|++=-+- + +++.+..=+..|.+.||.|++=|=... +++.++. ...-+|.
T Consensus 121 ~~~GADavLLI~~~----L--~~~~l~~l~~~a~~lGle~LVEVh~~~--------------El~~a~~----~ga~iiG 176 (247)
T PRK13957 121 RAFGASAILLIVRI----L--TPSQIKSFLKHASSLGMDVLVEVHTED--------------EAKLALD----CGAEIIG 176 (247)
T ss_pred HHcCCCEEEeEHhh----C--CHHHHHHHHHHHHHcCCceEEEECCHH--------------HHHHHHh----CCCCEEE
Confidence 45688888764331 1 355778889999999999999665432 2223343 1222333
Q ss_pred EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 165 YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
.=- |-.-|-+ .+++...+....|. ++..++--++++. +++..+. .. +||+|||.+-++ ++-.
T Consensus 177 INn-RdL~t~~-vd~~~~~~L~~~ip------------~~~~~IsESGI~t~~d~~~l~-~~-~davLvG~~lm~~~d~~ 240 (247)
T PRK13957 177 INT-RDLDTFQ-IHQNLVEEVAAFLP------------PNIVKVGESGIESRSDLDKFR-KL-VDAALIGTYFMEKKDIR 240 (247)
T ss_pred EeC-CCCccce-ECHHHHHHHHhhCC------------CCcEEEEcCCCCCHHHHHHHH-Hh-CCEEEECHHHhCCCCHH
Confidence 321 2222222 23444333222221 1234455555555 5555554 44 999999999887 5433
Q ss_pred H
Q 025540 243 D 243 (251)
Q Consensus 243 ~ 243 (251)
.
T Consensus 241 ~ 241 (247)
T PRK13957 241 K 241 (247)
T ss_pred H
Confidence 3
No 207
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=61.08 E-value=1e+02 Score=26.12 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=38.4
Q ss_pred cccccc---cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE
Q 025540 74 AFTGEI---SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (251)
Q Consensus 74 a~TGei---S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p 124 (251)
.|.|.| ....+|..|+++|+|-=+|=..+ .|.....-++.|.++||.+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikateG~~~---~D~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTEGTTY---RNPYAASQIANAKAAGLKV 58 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEcCCCCc---cChHHHHHHHHHHHCCCee
Confidence 367888 56789999999999977665332 5777889999999999963
No 208
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=60.99 E-value=1.2e+02 Score=27.43 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHCCCeEEE---EeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 114 VAYALSQGLKVIA---CVGETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 114 v~~al~~gl~pIl---CiGE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
+++|++.|...|- .+-+...+++-+.+.+...+++...++
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~ 121 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAE 121 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6777777755432 223333356667776555555544443
No 209
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.77 E-value=11 Score=35.00 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||+++++++.++. ++.+.--|+||++|+.+++. .+||.+-+|.--++
T Consensus 226 mspe~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~-tGVD~Is~galths 274 (290)
T PRK06559 226 MSLEQIEQAITLIAG------------RSRIECSGNIDMTTISRFRG-LAIDYVSSGSLTHS 274 (290)
T ss_pred CCHHHHHHHHHHhcC------------ceEEEEECCCCHHHHHHHHh-cCCCEEEeCccccC
Confidence 589999998887752 36789999999999999875 89999999986664
No 210
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.67 E-value=72 Score=27.75 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=24.1
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
.|++.+|+++|+|..+++...+-+|+=|-
T Consensus 155 ~p~~LAGGi~peNv~~ai~~~~p~gvDvs 183 (210)
T PRK01222 155 KPWILAGGLNPDNVAEAIRQVRPYGVDVS 183 (210)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCEEEec
Confidence 58999999999999999987666676553
No 211
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=59.91 E-value=11 Score=37.00 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccc---c-----CcceEEEccCCCcccHHHHh----cC-CCCC--EEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEI---A-----AATRIIYGGSVNGANCKELA----AQ-PDVD--GFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~---~-----~~i~ilYGGSV~~~n~~~l~----~~-~~vD--G~LVG~asl~ 238 (251)
+.-+..++....|+.|.+.||.+. + +.++|+|||+++.+-+.+++ .+ -.+| ++-||++-+.
T Consensus 295 DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~ 370 (463)
T PRK09198 295 DSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQ 370 (463)
T ss_pred CCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCccccc
Confidence 334445556667787877765432 2 48999999999999999854 22 2367 9999998765
No 212
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=59.88 E-value=8.2 Score=34.99 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=23.9
Q ss_pred EccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 209 YGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 209 YGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
-||-.+|..+ .|+-+.+.||+|||+.-.|
T Consensus 214 AGGvATPADA-ALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 214 AGGVATPADA-ALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred ccCcCChhHH-HHHHHhCCCeEEecccccC
Confidence 4666677666 7888999999999998776
No 213
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.73 E-value=10 Score=34.89 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+|++++++++.++. ..++.--|+||++|+.+++. .+||.+-+|.--++
T Consensus 223 ~s~e~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~-tGVD~Is~Galths 271 (281)
T PRK06106 223 MTPDTLREAVAIVAG------------RAITEASGRITPETAPAIAA-SGVDLISVGWLTHS 271 (281)
T ss_pred CCHHHHHHHHHHhCC------------CceEEEECCCCHHHHHHHHh-cCCCEEEeChhhcC
Confidence 478888888886642 24589999999999999876 69999999986654
No 214
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.63 E-value=8.1 Score=35.58 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+|+++++++..++. ...+.--|+||++|+.+++. .+||.+-+|.--++
T Consensus 222 ~s~e~l~~av~~~~~------------~~~leaSGgI~~~ni~~yA~-tGVD~Is~galths 270 (281)
T PRK06543 222 FSLDDLREGVELVDG------------RAIVEASGNVNLNTVGAIAS-TGVDVISVGALTHS 270 (281)
T ss_pred CCHHHHHHHHHHhCC------------CeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccC
Confidence 589999999987762 23688999999999999977 69999999986655
No 215
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=59.38 E-value=13 Score=34.96 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=31.2
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
+.++|+.-|+|..+|+.--+-..+.-|+|||+=.+
T Consensus 277 ~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 277 GRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred CceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 45999999999999999888899999999998543
No 216
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=59.07 E-value=11 Score=35.54 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=35.5
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 244 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~I 244 (251)
+||+-+|+.+++.+.+++..-.+|.+-+|++.+- |+|..=
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k 333 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVAR 333 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHH
Confidence 6899989999999999999999999999999996 887543
No 217
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=59.07 E-value=42 Score=31.13 Aligned_cols=117 Identities=19% Similarity=0.130 Sum_probs=61.8
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
...+.+.+++.|..+ |+--.+ .-++.+.++|+..+..|+...+.+ .+++ ...
T Consensus 106 ~~~~~~~~~~~v~~~-------~G~p~~---~~i~~l~~~gi~v~~~v~s~~~A~--------------~a~~----~G~ 157 (330)
T PF03060_consen 106 LDVALEAKPDVVSFG-------FGLPPP---EVIERLHAAGIKVIPQVTSVREAR--------------KAAK----AGA 157 (330)
T ss_dssp HHHHHHS--SEEEEE-------SSSC-H---HHHHHHHHTT-EEEEEESSHHHHH--------------HHHH----TT-
T ss_pred cccccccceEEEEee-------cccchH---HHHHHHHHcCCccccccCCHHHHH--------------Hhhh----cCC
Confidence 344555577777763 333311 345677789999999998765443 3333 223
Q ss_pred eEEEEcccCccC-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 161 IVLAYEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 161 ~iIAYEPvWAIG-tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+|-.|-..|=| .|... + .....+.+.... -++||+-.|++.......-+-..+.||+.+|.+-+
T Consensus 158 D~iv~qG~eAGGH~g~~~--~---~~~~L~~~v~~~-------~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 158 DAIVAQGPEAGGHRGFEV--G---STFSLLPQVRDA-------VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp SEEEEE-TTSSEE---SS--G----HHHHHHHHHHH--------SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHH
T ss_pred CEEEEeccccCCCCCccc--c---ceeeHHHHHhhh-------cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEE
Confidence 345567667877 44111 1 233333333221 13999999999887655555567999999998655
No 218
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=58.43 E-value=14 Score=34.20 Aligned_cols=52 Identities=29% Similarity=0.330 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+|+.++++.+.++.. + .+.+.|..=|++|++|+.+++.. +||.+-||+.-++
T Consensus 227 ~~~~~~~~~~~l~~~-----g---~~~~~ieaSGgI~~~~i~~~a~~-gvD~isvGs~~~~ 278 (302)
T cd01571 227 FRYLIREVRWALDIR-----G---YKHVKIFVSGGLDEEDIKELEDV-GVDAFGVGTAISK 278 (302)
T ss_pred HHHHHHHHHHHHHhC-----C---CCCeEEEEeCCCCHHHHHHHHHc-CCCEEECCcccCC
Confidence 677788777776642 1 14578999999999999999775 5999999987655
No 219
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.86 E-value=31 Score=28.71 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCccccCcceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc--hHHHHHHHHHh
Q 025540 187 FELRKWLLANTSPEIAAATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSAE 249 (251)
Q Consensus 187 ~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~~~ 249 (251)
.+|++.+++. .+.++|+|.+ +|+++...+-+.++|.+.|-+-+-- ..|..+++.+.
T Consensus 30 kvia~~l~d~-------GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 30 KVIARALADA-------GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred HHHHHHHHhC-------CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 3556666543 3679999986 4688888888999999999875554 56777777664
No 220
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.94 E-value=10 Score=35.24 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||++++++..++. ++.+---|+||++|+.+++. .+||.+-+|.--++
T Consensus 234 mspe~l~~av~~~~~------------~~~lEaSGGIt~~ni~~yA~-tGVD~IS~galths 282 (294)
T PRK06978 234 FTLDMMREAVRVTAG------------RAVLEVSGGVNFDTVRAFAE-TGVDRISIGALTKD 282 (294)
T ss_pred CCHHHHHHHHHhhcC------------CeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccC
Confidence 478888888776642 36789999999999999876 89999999987665
No 221
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=56.23 E-value=27 Score=33.91 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcC-CCCCEEEEcC
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQ-PDVDGFLVGG 234 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~-~~vDG~LVG~ 234 (251)
|..+++...+-++.+.+|+. ..+++|+.||.--.-+..+.+.. +.+|-+..|=
T Consensus 75 s~~t~~~~~~~~ia~~iK~~---------~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GE 128 (472)
T TIGR03471 75 HTSTPSFPSDVKTAEALKEQ---------NPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRRE 128 (472)
T ss_pred ECCCcchHHHHHHHHHHHHh---------CCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCc
Confidence 44567777777888888865 45689999998777777777764 7899999884
No 222
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=56.11 E-value=1e+02 Score=30.31 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=61.1
Q ss_pred hCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEE
Q 025540 86 NLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAY 165 (251)
Q Consensus 86 d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAY 165 (251)
.+|++.|++=.+ .+ +++.+..=+..|.+.||.|++.|-...| ++.+++ ...-+|..
T Consensus 130 ~~GADavLLI~~----~L--~~~~l~~l~~~a~~lGl~~lvEvh~~~E--------------l~~al~----~~a~iiGi 185 (454)
T PRK09427 130 YYGADAILLMLS----VL--DDEQYRQLAAVAHSLNMGVLTEVSNEEE--------------LERAIA----LGAKVIGI 185 (454)
T ss_pred HcCCCchhHHHH----hC--CHHHHHHHHHHHHHcCCcEEEEECCHHH--------------HHHHHh----CCCCEEEE
Confidence 346666554322 12 2456778889999999999999986542 223443 11112221
Q ss_pred cccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 166 EPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.-|-.-|- ..+++...+....|. .++.++--++++.......+.. ++||+|||.+-++
T Consensus 186 -NnRdL~t~-~vd~~~~~~l~~~ip------------~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~ 243 (454)
T PRK09427 186 -NNRNLRDL-SIDLNRTRELAPLIP------------ADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMA 243 (454)
T ss_pred -eCCCCccc-eECHHHHHHHHhhCC------------CCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcC
Confidence 00111111 123444443333332 2344555555655444444554 6999999999887
No 223
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=55.88 E-value=1.6e+02 Score=26.83 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHCCCeEEEEe---CCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 114 VAYALSQGLKVIACV---GETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 114 v~~al~~gl~pIlCi---GE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
+++|++.|+..|-.. .|....++.+++.+...+++...++
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~ 127 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAE 127 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456666666643322 3333345556666665555555554
No 224
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=55.75 E-value=9.9 Score=35.28 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+|++++++++.++ .++.+.--|+|+++|+.+++. .+||.+-+|.--+.
T Consensus 237 ~s~e~~~~av~~~~------------~~~~ieaSGGI~~~ni~~yA~-tGVD~Is~galths 285 (296)
T PRK09016 237 FTTEQMREAVKRTN------------GRALLEVSGNVTLETLREFAE-TGVDFISVGALTKH 285 (296)
T ss_pred CChHHHHHHHHhhc------------CCeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccC
Confidence 45677666666543 257899999999999999866 89999999986665
No 225
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=55.63 E-value=19 Score=33.01 Aligned_cols=175 Identities=21% Similarity=0.255 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhccCCCCCCceeEEEcC--ccccHHHHHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEe
Q 025540 18 EEVKKIVSVLNEGQVPSSDVVEVVVSP--PFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL 94 (251)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~v~i~P--p~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~vii 94 (251)
+-..++.+++..... ...+-..+|. ||..+....+.++ -.+ -|-||. ...|-+-|.. -+.|.+.|..|-
T Consensus 66 ~iv~em~~eiLp~v~--~tPViaGv~atDP~~~~~~fl~~lk~~Gf-~GV~Nf--PTvgliDG~f-R~~LEe~Gmgy~-- 137 (268)
T PF09370_consen 66 EIVMEMAREILPVVK--DTPVIAGVCATDPFRDMDRFLDELKELGF-SGVQNF--PTVGLIDGQF-RQNLEETGMGYD-- 137 (268)
T ss_dssp HHHHHHHHHHGGG-S--SS-EEEEE-TT-TT--HHHHHHHHHHHT--SEEEE---S-GGG--HHH-HHHHHHTT--HH--
T ss_pred HHHHHHHHhhhhhcc--CCCEEEEecCcCCCCcHHHHHHHHHHhCC-ceEEEC--CcceeeccHH-HHHHHhcCCCHH--
Confidence 344555555544221 1235556666 7777777766665 233 588995 4455555443 245555555431
Q ss_pred CchhhccccccChHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCc---
Q 025540 95 GHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA--- 170 (251)
Q Consensus 95 GHSERR~~f~Etd~~i~~Kv~~al~~gl~pI-lCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWA--- 170 (251)
.|- .=++.|.+.||-.+ +|..+. +.+ ...+. ...++++. .-|-
T Consensus 138 ---------~EV-----emi~~A~~~gl~T~~yvf~~e-~A~--------------~M~~A---GaDiiv~H-~GlT~gG 184 (268)
T PF09370_consen 138 ---------REV-----EMIRKAHEKGLFTTAYVFNEE-QAR--------------AMAEA---GADIIVAH-MGLTTGG 184 (268)
T ss_dssp ---------HHH-----HHHHHHHHTT-EE--EE-SHH-HHH--------------HHHHH---T-SEEEEE--SS----
T ss_pred ---------HHH-----HHHHHHHHCCCeeeeeecCHH-HHH--------------HHHHc---CCCEEEec-CCccCCC
Confidence 122 36778889998755 555432 222 22221 22345554 4443
Q ss_pred -cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHHhcCCC-CCEEEEcCccCc
Q 025540 171 -IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKELAAQPD-VDGFLVGGASLK 238 (251)
Q Consensus 171 -IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l~~~~~-vDG~LVG~asl~ 238 (251)
||.....|.++..+..+.|.+...+.- -+-+.+.|||-++ |+.+..++.... +||+ +|+.|++
T Consensus 185 ~~Ga~~~~sl~~a~~~~~~i~~aa~~v~----~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf-~G~Ss~E 250 (268)
T PF09370_consen 185 SIGAKTALSLEEAAERIQEIFDAARAVN----PDIIVLCHGGPIATPEDAQYVLRNTKGIHGF-IGASSME 250 (268)
T ss_dssp ------S--HHHHHHHHHHHHHHHHCC-----TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE-EESTTTT
T ss_pred CcCccccCCHHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE-ecccchh
Confidence 333444577777777777776654432 2347888999886 566666666555 8986 5667776
No 226
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=55.42 E-value=1.2e+02 Score=25.34 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHhCCCCEEEeCchhh-ccccccC-----------hHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHH--H---
Q 025540 81 AEMLVNLEIPWVILGHSER-RLILNEL-----------NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMD--V--- 143 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSER-R~~f~Et-----------d~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~--~--- 143 (251)
..+++++|+++||+-=+== +..|.-+ ++.|..-+.+|-+.||+..+=++-...=-++++... .
T Consensus 26 ~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~ 105 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNK 105 (166)
T ss_pred HHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHH
Confidence 4689999999998862211 1222223 358999999999999999997775422111222111 1
Q ss_pred -HHHHHHHHHhccCCCCCeEEEEcccCccCCCCC-CCHHHHHHHHHHHHH
Q 025540 144 -VAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKV-ATPAQAQEVHFELRK 191 (251)
Q Consensus 144 -~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~-a~~e~i~~~~~~IR~ 191 (251)
+.++|...-..-+.+.--+|-||+- ..+ .+++..+.+.+.+++
T Consensus 106 ~v~~el~~~yg~h~sf~GWYip~E~~-----~~~~~~~~~~~~l~~~lk~ 150 (166)
T PF14488_consen 106 QVADELWQRYGHHPSFYGWYIPYEID-----DYNWNAPERFALLGKYLKQ 150 (166)
T ss_pred HHHHHHHHHHcCCCCCceEEEecccC-----CcccchHHHHHHHHHHHHH
Confidence 2222222111112355688999983 222 245555544444443
No 227
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=55.21 E-value=8.1 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.3
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.-+|+-..|+|+|.-..+-+. .+.||+||.|.-..
T Consensus 30 riIrvpC~Grv~~~~il~Af~-~GADGV~V~gC~~g 64 (124)
T PF02662_consen 30 RIIRVPCSGRVDPEFILRAFE-KGADGVLVAGCHPG 64 (124)
T ss_pred EEEEccCCCccCHHHHHHHHH-cCCCEEEEeCCCCC
Confidence 347889999999999977666 58999999776543
No 228
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=55.00 E-value=88 Score=27.40 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcHHHHh--cCCc---HHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCC-CCCH
Q 025540 106 LNEFVGDKVAYALSQGLKVIACVGETLEQRE--AGST---MDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGK-VATP 179 (251)
Q Consensus 106 td~~i~~Kv~~al~~gl~pIlCiGE~~~~r~--~g~~---~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~-~a~~ 179 (251)
+.+.....++.+.+.|+++++|||-...... ...+ .+...+++...+..- .+.-+-|-||+.-.-+.+. +++.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y-glDGiDiD~E~~~~~~~~~~~~~~ 127 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY-GLDGVDFDDEYSGYGKNGTSQPSN 127 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCceEEeeeecccCCCCCCcchH
Confidence 4445556777778899999999996432111 0111 122233333333321 3667889999864422221 2344
Q ss_pred HHHHHHHHHHHHHH
Q 025540 180 AQAQEVHFELRKWL 193 (251)
Q Consensus 180 e~i~~~~~~IR~~l 193 (251)
+.....++.+|+.+
T Consensus 128 ~~~~~lv~~Lr~~~ 141 (255)
T cd06542 128 EAFVRLIKELRKYM 141 (255)
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555554
No 229
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.76 E-value=16 Score=32.94 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=65.9
Q ss_pred EecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHh-----------hcC-CCceEeeeccc-ccCCccc
Q 025540 9 GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKS-----------SLR-PGFHVAAQNCW-VKKGGAF 75 (251)
Q Consensus 9 ~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~-----------~~~-~~i~vgAQn~~-~~~~Ga~ 75 (251)
-||..-.+.+++.+++..+.. -.|++.--.-.|..+.. .+. +....|=+.-+ ..-.|+|
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~--------~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPf 181 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGG--------GRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPF 181 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCC--------CCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCC
Confidence 378777888888777754321 13444444444444322 111 11122212222 2467999
Q ss_pred cccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
+=|.--.|+++.|+++++-=-|=. + -...|+.+|++.|+.+|+ |.-+
T Consensus 182 s~e~n~al~~~~~i~~lVtK~SG~------~--g~~eKi~AA~~lgi~viv-I~RP 228 (249)
T PF02571_consen 182 SKELNRALFRQYGIDVLVTKESGG------S--GFDEKIEAARELGIPVIV-IKRP 228 (249)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCc------h--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 999999999999999999755532 2 345799999999999887 4444
No 230
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=54.70 E-value=24 Score=31.62 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+|+++......++.. . .+....-.++.|..-|+++++|+.+++.. ++|.+-+|..-++
T Consensus 214 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~Sggi~~~~i~~~~~~-gvd~~gvG~~~~~ 272 (281)
T cd00516 214 GSPEELDPAVLILKAR-A-HLDGKGLPRVKIEASGGLDEENIRAYAET-GVDVFGVGTLLHS 272 (281)
T ss_pred CChHHHHHHHHHHHHH-H-hhhhcCCCceEEEEeCCCCHHHHHHHHHc-CCCEEEeCccccc
Confidence 3457777666665532 1 11111235688999999999999998774 5999999986554
No 231
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=54.58 E-value=63 Score=28.74 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEe
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL 94 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~vii 94 (251)
..+++.+-++...+ .+.|.+..|+......+....+ .+..+- +...+.+. .+|++.|+++|++.++.
T Consensus 158 ~~~eai~Ra~ay~~------AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~---~~~~~~~~---~~~~~~l~~lG~~~v~~ 225 (243)
T cd00377 158 GLDEAIERAKAYAE------AGADGIFVEGLKDPEEIRAFAEAPDVPLN---VNMTPGGN---LLTVAELAELGVRRVSY 225 (243)
T ss_pred CHHHHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHhcCCCCEE---EEecCCCC---CCCHHHHHHCCCeEEEE
Confidence 45666555554443 2456666666656665555443 222222 12222222 79999999999999999
Q ss_pred Cchhhc
Q 025540 95 GHSERR 100 (251)
Q Consensus 95 GHSERR 100 (251)
|.+=-|
T Consensus 226 ~~~~~~ 231 (243)
T cd00377 226 GLALLR 231 (243)
T ss_pred ChHHHH
Confidence 986433
No 232
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=54.52 E-value=21 Score=33.95 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC-CCEEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD-VDGFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~-vDG~LVG~asl~ 238 (251)
+++.++++.+.++ +.. -++++|+-=|+++++|+.++....- ||++-||..-.+
T Consensus 262 ~~~l~~~vr~~Ld----~~g----~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 262 NPELIKALRKALD----ENG----GKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred cHHHHHHHHHHHh----hCC----CCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCccccc
Confidence 5666665544443 332 2679999999999999999987543 999999997665
No 233
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=53.72 E-value=17 Score=32.17 Aligned_cols=39 Identities=26% Similarity=0.118 Sum_probs=28.8
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCch-HHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLKP-EFIDI 244 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~~-~F~~I 244 (251)
++||+.-|+|+ ++-+.+++. .++||+.||++ -+| -|.+|
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~-~~p~~~~~~ 231 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFS-YGADMVSVARA-SLPENIEWL 231 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-CCchHHHHh
Confidence 48999988885 455666665 78999999999 444 56554
No 234
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.54 E-value=68 Score=27.90 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCeEEEEcccCccCCCCC----CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcC
Q 025540 159 SNIVLAYEPVWAIGTGKV----ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~----a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~ 234 (251)
.-.++.+-|+|.--|-.. ...+..+ ++... ..++||+-=|+++++|+.++.. .+.||+-|-|
T Consensus 122 gaDYi~lgpvf~T~tK~~~~~~~G~~~l~-------~~~~~------~~~~PV~AiGGI~~~ni~~l~~-~Ga~GiAvis 187 (211)
T PRK03512 122 RPSYIALGHVFPTQTKQMPSAPQGLAQLA-------RHVER------LADYPTVAIGGISLERAPAVLA-TGVGSIAVVS 187 (211)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHH-------HHHHh------cCCCCEEEECCCCHHHHHHHHH-cCCCEEEEhh
Confidence 346899999998865432 2234443 22211 1248999999999999999885 6899999999
Q ss_pred ccCc
Q 025540 235 ASLK 238 (251)
Q Consensus 235 asl~ 238 (251)
+-+.
T Consensus 188 ai~~ 191 (211)
T PRK03512 188 AITQ 191 (211)
T ss_pred HhhC
Confidence 8876
No 235
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=53.39 E-value=88 Score=27.68 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHH
Q 025540 108 EFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHF 187 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~ 187 (251)
+.+.+-++.|.+.|...|++..-...........+.+.+.++.+.+.. ....+.|++||.+-..+-...|++++.++++
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~ 163 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKA-ETKGVVIALETMAGQGNEIGSSFEELKEIID 163 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 455677888888888876653222111001112334444455444422 2346788899887554434456777666666
Q ss_pred HH
Q 025540 188 EL 189 (251)
Q Consensus 188 ~I 189 (251)
.+
T Consensus 164 ~v 165 (279)
T cd00019 164 LI 165 (279)
T ss_pred hc
Confidence 55
No 236
>PRK04531 acetylglutamate kinase; Provisional
Probab=53.39 E-value=27 Score=33.62 Aligned_cols=80 Identities=19% Similarity=0.099 Sum_probs=49.6
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHH-----------HHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGD-----------KVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQT 148 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~-----------Kv~~al~~gl~pIl-CiGE~~~~r~~g~~~~~~~~Ql 148 (251)
-++|+..|++-..+.+ +|..-.|+-+.+.. .++.++++|..||+ |+|++....--+-..+.+...|
T Consensus 80 ~~~l~~~gie~~~v~G--~RVTd~~tl~vv~~~l~~vn~~lv~~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~L 157 (398)
T PRK04531 80 DAELDAAGIEKETVNG--LRVTSPEALAIVRKVFQRSNLDLVEAVESSLRAGSIPVIASLGETPSGQILNINADVAANEL 157 (398)
T ss_pred HHHHHHcCCCcEEECC--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHH
Confidence 3788888888777755 55544444333322 26778999999998 5776531111122567777777
Q ss_pred HHHHhccCCCCCeEEEEc
Q 025540 149 KAIADRVSSWSNIVLAYE 166 (251)
Q Consensus 149 ~~~l~~i~~~~~~iIAYE 166 (251)
...|. ..++++.-+
T Consensus 158 A~aL~----a~KLIfltd 171 (398)
T PRK04531 158 VSALQ----PYKIIFLTG 171 (398)
T ss_pred HHHcC----CCEEEEEEC
Confidence 77765 456666653
No 237
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.13 E-value=1.1e+02 Score=28.09 Aligned_cols=68 Identities=29% Similarity=0.354 Sum_probs=47.5
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEc-cCCCcccHHHHh---cCCCCCEEEEcCccCc-h------
Q 025540 173 TGKV--ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYG-GSVNGANCKELA---AQPDVDGFLVGGASLK-P------ 239 (251)
Q Consensus 173 tG~~--a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYG-GSV~~~n~~~l~---~~~~vDG~LVG~asl~-~------ 239 (251)
||.. .|.|+=.++.+..++.. +..+||+-| ||.+.+++.+++ ...++||+|+--=... +
T Consensus 48 tGE~~~Ls~eEr~~v~~~~v~~~--------~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~ 119 (299)
T COG0329 48 TGESPTLTLEERKEVLEAVVEAV--------GGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLY 119 (299)
T ss_pred CccchhcCHHHHHHHHHHHHHHH--------CCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHH
Confidence 4555 47888888888887764 456888887 555577777665 4778999999875543 2
Q ss_pred -HHHHHHHHH
Q 025540 240 -EFIDIIKSA 248 (251)
Q Consensus 240 -~F~~Ii~~~ 248 (251)
.|..|+++.
T Consensus 120 ~hf~~ia~a~ 129 (299)
T COG0329 120 AHFKAIAEAV 129 (299)
T ss_pred HHHHHHHHhc
Confidence 467776654
No 238
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=53.13 E-value=3.4 Score=30.25 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHH----------HHHHhcCCccccCcceEEEcc
Q 025540 177 ATPAQAQEVHFELR----------KWLLANTSPEIAAATRIIYGG 211 (251)
Q Consensus 177 a~~e~i~~~~~~IR----------~~l~~~~~~~~~~~i~ilYGG 211 (251)
++|++.+++|+.+. ..+.++.|+.++.++-||||-
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGl 56 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGL 56 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHH
Confidence 46777666665554 346677788889999999984
No 239
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=53.11 E-value=28 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEEcccCccCCCCC--CCHHHHHHHHHHHHHH
Q 025540 162 VLAYEPVWAIGTGKV--ATPAQAQEVHFELRKW 192 (251)
Q Consensus 162 iIAYEPvWAIGtG~~--a~~e~i~~~~~~IR~~ 192 (251)
.||+ | +||||.- +..+-++-+.+.||++
T Consensus 110 SIAf-P--ai~tG~~gfP~~~aa~i~l~~v~~~ 139 (140)
T cd02905 110 SIAL-C--VISSEKRNYPPEAAAHIALRTVRRF 139 (140)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHh
Confidence 4666 7 8888876 3344446677777765
No 240
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=52.74 E-value=1.4e+02 Score=25.01 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=39.1
Q ss_pred ccccccH-HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE
Q 025540 75 FTGEISA-EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (251)
Q Consensus 75 ~TGeiS~-~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p 124 (251)
|.|+|.. ..+++.|+++|+|-=+|-..+ .|.....-++.|.++||..
T Consensus 8 ~qg~id~~~~~~~~g~~fviikateG~~~---~D~~f~~n~~~a~~aGl~v 55 (177)
T cd06523 8 WQGPINWDYDTLSKQLDLVIIRVQYGSNY---VDLKYKNNIKEFKKRGIPF 55 (177)
T ss_pred cCCCCCHHHHHHhCCCCEEEEEEeCCCcc---cCHHHHHHHHHHHHcCCCe
Confidence 6788888 357788999999988886544 7888899999999999974
No 241
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.37 E-value=1.4e+02 Score=28.36 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=34.4
Q ss_pred cceEEEccCC-------------------CcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 204 ATRIIYGGSV-------------------NGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 204 ~i~ilYGGSV-------------------~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
++||+--|++ +++.+.+++....+|.+.+|++.+- |+|..
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~ 339 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVA 339 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHH
Confidence 4789999987 7788999999999999999999997 77644
No 242
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.36 E-value=55 Score=28.99 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCCcHH-HHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHH
Q 025540 107 NEFVGDKVAYALSQGLKVIACVGETLE-QREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 185 (251)
Q Consensus 107 d~~i~~Kv~~al~~gl~pIlCiGE~~~-~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~ 185 (251)
-+.+.+-++.|.+.|...|.|.|-... ........+...+.++.+.+.. ....+.|+|||.. +.-..+++++-++
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A-~~~GV~i~iE~~~---~~~~~~~~~~~~l 173 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELA-SRASVTLAFEIMD---TPFMNSISKALGY 173 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeecC---CcccCCHHHHHHH
Confidence 345667788899999887766543210 0000112233334444433311 1235889999962 2222355554443
Q ss_pred HH
Q 025540 186 HF 187 (251)
Q Consensus 186 ~~ 187 (251)
++
T Consensus 174 l~ 175 (283)
T PRK13209 174 AH 175 (283)
T ss_pred HH
Confidence 33
No 243
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=51.64 E-value=1.5e+02 Score=25.29 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=71.0
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI---lCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
.|-|.|...-+++-|+++|+|-=+|=..+ .|.....-.+.|.++||..= ++-..+.. .+|.+-
T Consensus 15 ~~qg~IDw~~v~~~gi~Fv~iKATEG~~~---~D~~f~~n~~~A~~~Gl~vGaYHf~~~~~~~-----------~~QA~~ 80 (190)
T cd06419 15 QDDGYIDFNSLQSNGISFVYLRATQGASY---FDDNFLSNFSRAQGTGLSVGVIHTFSFSSTA-----------AAQYRY 80 (190)
T ss_pred CCCCccCHHHHHhCCCeEEEEEeecCCCc---cChhHHHHHHHHHHCCCCEEEEEEeecCCCH-----------HHHHHH
Confidence 36799999999999999999988877655 46777889999999999841 22222211 245556
Q ss_pred HHhccCC---CCCeEEEEcccCccCCCCCCCHHHH-HHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQA-QEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 151 ~l~~i~~---~~~~iIAYEPvWAIGtG~~a~~e~i-~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
.++.+.. .=+++|-.| +. |. ..++++++ ..+.++++. +.+.+| .-+|+|.+.
T Consensus 81 F~~~v~~~~~~lp~vlD~E--~~-~~-~~~~~~~~~~~~~~fl~~-ve~~~g-----~~piIYt~~ 136 (190)
T cd06419 81 FIRKVGNNTGNLPIAIYVS--YY-GD-YNPDTKKSTQKLGLLVQL-LEQHYN-----QSVIIRGTP 136 (190)
T ss_pred HHHhCCCCCCCCCeEEEEe--cC-CC-CCCCHHHHHHHHHHHHHH-HHHHHC-----CCeEEEeCH
Confidence 6665542 113445445 22 21 12455555 445555543 343333 358999854
No 244
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=50.99 E-value=52 Score=30.39 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHHCC--CeEEEEeCCcHHHHhc----CCcHHHHHHHHHHHHh-------c-----------cCCCCCeE-EEEccc
Q 025540 114 VAYALSQG--LKVIACVGETLEQREA----GSTMDVVAAQTKAIAD-------R-----------VSSWSNIV-LAYEPV 168 (251)
Q Consensus 114 v~~al~~g--l~pIlCiGE~~~~r~~----g~~~~~~~~Ql~~~l~-------~-----------i~~~~~~i-IAYEPv 168 (251)
|+.|+++| |.|++|.||++-=+.- +.....+.+.+...+. + ++.-.++. +.=+|+
T Consensus 172 vklAl~~Ga~LVPv~~FGE~d~~~~~~~~~~~~~r~~q~~~~~~~g~~~~~f~Grg~f~~~~~gllP~r~pi~~VVG~PI 251 (297)
T PF03982_consen 172 VKLALQHGAPLVPVYSFGENDLYDQVQNPPGSWLRRFQRWLKKKFGFSLPLFWGRGIFPSYSFGLLPYRRPITTVVGKPI 251 (297)
T ss_pred HHhHHHcCCcEEeEEEeCChhheeeccCCchhHHHHHHHHHHHHcCcceeeeecccccCCCcccccccCCceEEEeecee
Confidence 56677765 6799999999642221 1122223344444332 1 11112332 334454
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 025540 169 WAIGTGKVATPAQAQEVHFELRKWLLANTS 198 (251)
Q Consensus 169 WAIGtG~~a~~e~i~~~~~~IR~~l~~~~~ 198 (251)
-.=-. ..+|.|+|++.|+.-=+.|.++|.
T Consensus 252 ~v~~~-~~Pt~e~Vd~~H~~Y~~~L~~LFd 280 (297)
T PF03982_consen 252 PVPKI-ENPTQEDVDKLHARYIEALRELFD 280 (297)
T ss_pred cccCC-CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 33222 236899999999988888888774
No 245
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=50.89 E-value=75 Score=27.96 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=76.5
Q ss_pred CccccccccH---HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHH
Q 025540 72 GGAFTGEISA---EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT 148 (251)
Q Consensus 72 ~Ga~TGeiS~---~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql 148 (251)
-|=|+.+-.. +.+++.+.++| +++++-+..--+.++......+...+.+.+..+. +.
T Consensus 56 VgVf~n~~~~~i~~i~~~~~ld~V--------QlHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~------------~~ 115 (208)
T COG0135 56 VGVFVNESIEEILEIAEELGLDAV--------QLHGDEDPEYIDQLKEELGVPVIKAISVSEEGDL------------EL 115 (208)
T ss_pred EEEECCCCHHHHHHHHHhcCCCEE--------EECCCCCHHHHHHHHhhcCCceEEEEEeCCccch------------hh
Confidence 3445555553 78888899988 6666444444445555555677788889876321 00
Q ss_pred HHHHhccCCCCCeEE-EEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCC
Q 025540 149 KAIADRVSSWSNIVL-AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 227 (251)
Q Consensus 149 ~~~l~~i~~~~~~iI-AYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~v 227 (251)
..... .....+++ +|-|---=|||++-+-+-+... | ...|++..|++||+|+.+.+....-
T Consensus 116 ~~~~~--~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~------------~~~~~~LAGGL~p~NV~~ai~~~~p 177 (208)
T COG0135 116 AAREE--GPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----R------------LSKPVMLAGGLNPDNVAEAIALGPP 177 (208)
T ss_pred hhhcc--CCccEEEEcCCCCCCCCCCCcEECHHHhccc----c------------ccCCEEEECCCCHHHHHHHHHhcCC
Confidence 01111 11122222 3434334689998876655432 1 1357999999999999999887776
Q ss_pred CEEEEcC
Q 025540 228 DGFLVGG 234 (251)
Q Consensus 228 DG~LVG~ 234 (251)
.|+=|-+
T Consensus 178 ~gvDvSS 184 (208)
T COG0135 178 YGVDVSS 184 (208)
T ss_pred ceEEecc
Confidence 7766655
No 246
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=49.85 E-value=32 Score=31.97 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=30.0
Q ss_pred cceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc-h-HHHHHHH
Q 025540 204 ATRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-P-EFIDIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~-~-~F~~Ii~ 246 (251)
++||++=|.|.. +.+.+++. ++||+.||++.|. | -|.++-+
T Consensus 195 ~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 195 HLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred CCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHH
Confidence 588887777755 55555663 8999999999997 5 4666543
No 247
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=49.12 E-value=2.4e+02 Score=26.74 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=85.4
Q ss_pred cHHHHHhCCCCEEEeCchhhccccc-----cChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILN-----ELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~-----Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
.++-|+|.|+++.-.++=-.|.+|. .|-+.--.-++.+.++||.+ |+=.||+.++|- ....+|+
T Consensus 146 q~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri------~~l~~L~- 218 (335)
T COG0502 146 QAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRA------ELLLELA- 218 (335)
T ss_pred HHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHH------HHHHHHH-
Confidence 5677899999998776655666664 46677778889999999984 677899998872 1222232
Q ss_pred HHhccCCCC----CeEEEEcccCccCCC----CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC--CCcccHHH
Q 025540 151 IADRVSSWS----NIVLAYEPVWAIGTG----KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS--VNGANCKE 220 (251)
Q Consensus 151 ~l~~i~~~~----~~iIAYEPvWAIGtG----~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS--V~~~n~~~ 220 (251)
.+++.. +..+.+| ||. +..++-+.-++++..|-.+ ++..|-++|+ +....-..
T Consensus 219 ---~l~~pdsVPIn~l~P~~-----GTPle~~~~~~~~e~lk~IA~~Ri~~---------P~~~Ir~s~gr~~~~~~~q~ 281 (335)
T COG0502 219 ---NLPTPDSVPINFLNPIP-----GTPLENAKPLDPFEFLKTIAVARIIM---------PKSMIRLSAGRETMLPELQA 281 (335)
T ss_pred ---hCCCCCeeeeeeecCCC-----CCccccCCCCCHHHHHHHHHHHHHHC---------CcceeEccCCcccccHHHHH
Confidence 222111 2223332 342 2357778888888888653 3456777443 33444457
Q ss_pred HhcCCCCCEEEEcC
Q 025540 221 LAAQPDVDGFLVGG 234 (251)
Q Consensus 221 l~~~~~vDG~LVG~ 234 (251)
+.-..+++.+++|.
T Consensus 282 ~~~~aGansi~~g~ 295 (335)
T COG0502 282 LAFMAGANSIFVGD 295 (335)
T ss_pred HHHHhccceeeecc
Confidence 77788999999998
No 248
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.13 E-value=52 Score=26.94 Aligned_cols=135 Identities=15% Similarity=0.066 Sum_probs=68.3
Q ss_pred CceeEEEcCcccc------HHHHHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChH
Q 025540 36 DVVEVVVSPPFVF------LGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNE 108 (251)
Q Consensus 36 ~~~~v~i~Pp~~~------L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~ 108 (251)
+.+++...++... +..+.+.+. .++.+.+-+...... ++... ..+++.. ..+..+
T Consensus 10 ~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~--~~~~~---------------~~~~~~~-r~~~~~ 71 (213)
T PF01261_consen 10 DGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFW--SPDEE---------------NGSANDE-REEALE 71 (213)
T ss_dssp SEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSS--CTGTT---------------STTSSSH-HHHHHH
T ss_pred CEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccc--ccccc---------------ccCcchh-hHHHHH
Confidence 4566665554444 456666665 678777766543222 11111 2233322 455566
Q ss_pred HHHHHHHHHHHCCCeEEEEe-C--CcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHH
Q 025540 109 FVGDKVAYALSQGLKVIACV-G--ETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 185 (251)
Q Consensus 109 ~i~~Kv~~al~~gl~pIlCi-G--E~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~ 185 (251)
.+.+-++.|.+.|...++.- | +...........+.+.+-++.+.+... -..+.|++||..-..+....+.+++.++
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~~~~ 150 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAE-EYGVRIALENHPGPFSETPFSVEEIYRL 150 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHH-HHTSEEEEE-SSSSSSSEESSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhh-hhcceEEEecccCccccchhhHHHHHHH
Confidence 77788888888998877766 3 111111001122333333333333211 2258899999765554444444555544
Q ss_pred HHHH
Q 025540 186 HFEL 189 (251)
Q Consensus 186 ~~~I 189 (251)
++.+
T Consensus 151 l~~~ 154 (213)
T PF01261_consen 151 LEEV 154 (213)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 4444
No 249
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=48.06 E-value=1.7e+02 Score=24.86 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=77.5
Q ss_pred cccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHH
Q 025540 66 NCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVA 145 (251)
Q Consensus 66 n~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~ 145 (251)
|++..+-+ .|.+.-.+++.++|++++.+ |.|- + .+.+.+=++.+.+.|+.+.+=+.-+ ..+.. +.+.
T Consensus 59 D~k~~di~-~~~~~~~~~~~~~gad~vtv-h~e~----g--~~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~---~~~~ 125 (215)
T PRK13813 59 DLKVADIP-NTNRLICEAVFEAGAWGIIV-HGFT----G--RDSLKAVVEAAAESGGKVFVVVEMS--HPGAL---EFIQ 125 (215)
T ss_pred EeeccccH-HHHHHHHHHHHhCCCCEEEE-cCcC----C--HHHHHHHHHHHHhcCCeEEEEEeCC--CCCCC---CCHH
Confidence 55544432 35555568889999999866 5551 1 3456666777888999886533211 11111 1112
Q ss_pred HHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc--cHHHHhc
Q 025540 146 AQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA--NCKELAA 223 (251)
Q Consensus 146 ~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~--n~~~l~~ 223 (251)
.++..++. ++.||-- .|....+....++ +.+|+... .++.++= |+|+++ |+.+++.
T Consensus 126 ~~~~~v~~---------m~~e~G~---~g~~~~~~~~~~i-~~l~~~~~--------~~~~ivd-gGI~~~g~~~~~~~~ 183 (215)
T PRK13813 126 PHADKLAK---------LAQEAGA---FGVVAPATRPERV-RYIRSRLG--------DELKIIS-PGIGAQGGKAADAIK 183 (215)
T ss_pred HHHHHHHH---------HHHHhCC---CeEEECCCcchhH-HHHHHhcC--------CCcEEEe-CCcCCCCCCHHHHHH
Confidence 33333322 2223310 1222222222222 23444321 2344544 578876 5776665
Q ss_pred CCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 224 QPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 224 ~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
.+.|++.+|++-++ ++..+.++.+
T Consensus 184 -aGad~iV~Gr~I~~~~d~~~~~~~l 208 (215)
T PRK13813 184 -AGADYVIVGRSIYNAADPREAAKAI 208 (215)
T ss_pred -cCCCEEEECcccCCCCCHHHHHHHH
Confidence 79999999998776 5555555443
No 250
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.86 E-value=12 Score=35.10 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.7
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
++||+.-|++ +++.+.+++.. ++|++.+|++.+. |+|..
T Consensus 284 ~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~ 324 (353)
T cd04735 284 RLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVE 324 (353)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHH
Confidence 5899999998 79999999987 8999999999986 77643
No 251
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=47.84 E-value=83 Score=27.24 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 108 EFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
+.+.+-|..|.++||.+|+++=..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHhCCCeEEEEeccC
Confidence 455678899999999999998663
No 252
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=47.75 E-value=57 Score=28.70 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=45.4
Q ss_pred CCeEEEEcccCccCCCCCCC-HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 159 SNIVLAYEPVWAIGTGKVAT-PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~-~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.-.+|++=|++. |.++.+ |.-. ..+|.+. +. -++||+-=|+++++|+.++.. .+.||+-|-++-+
T Consensus 131 gaDYv~~Gpv~t--~tK~~~~p~gl----~~l~~~~-~~------~~iPvvAIGGI~~~n~~~~~~-~GA~giAvisai~ 196 (221)
T PRK06512 131 RPDYLFFGKLGA--DNKPEAHPRNL----SLAEWWA-EM------IEIPCIVQAGSDLASAVEVAE-TGAEFVALERAVF 196 (221)
T ss_pred CCCEEEECCCCC--CCCCCCCCCCh----HHHHHHH-Hh------CCCCEEEEeCCCHHHHHHHHH-hCCCEEEEhHHhh
Confidence 346899999984 344432 2222 2333322 21 248999999999999988775 6899999999888
Q ss_pred c
Q 025540 238 K 238 (251)
Q Consensus 238 ~ 238 (251)
+
T Consensus 197 ~ 197 (221)
T PRK06512 197 D 197 (221)
T ss_pred C
Confidence 6
No 253
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.25 E-value=1.7e+02 Score=24.61 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=39.2
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p 124 (251)
.|.|.|-...||+.|+++|+|==.|-..+ .|.....-++.|.++||..
T Consensus 8 ~~q~~i~w~~vk~~g~~fv~ikateg~~~---~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 8 QPTSVSTFQCLKNNGYSFAIIRAYRSNGS---FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred cccChhhhhHHHhCCceEEEEEEEccCCc---cChHHHHHHHHHHHcCCcc
Confidence 36789999999999999999954444322 5888889999999999974
No 254
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.04 E-value=2e+02 Score=25.21 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCccc--cHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEE
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFV--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWV 92 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~--~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~v 92 (251)
.+.+++.+.++.+.+.-. +-+||-+--|.. .+..+++.+ +++.+||=-+-- .-.+++..+.|++|+
T Consensus 24 ~~~~~a~~i~~al~~~Gi---~~iEitl~~~~~~~~I~~l~~~~-p~~~IGAGTVl~--------~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGL---PVLEVTLRTPAALEAIRLIAKEV-PEALIGAGTVLN--------PEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCC---CEEEEecCCccHHHHHHHHHHHC-CCCEEEEeeccC--------HHHHHHHHHcCCCEE
Confidence 456788888887766322 346666544421 233333333 457777755542 256899999999999
Q ss_pred EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccC
Q 025540 93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (251)
Q Consensus 93 iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIG 172 (251)
+.=|..+ .-++.|.+.++..+=.+-...|-. .+.+ ..--++-+=|.-+.|
T Consensus 92 vsP~~~~------------~vi~~a~~~~i~~iPG~~TptEi~--------------~a~~----~Ga~~vKlFPa~~~g 141 (212)
T PRK05718 92 VSPGLTP------------PLLKAAQEGPIPLIPGVSTPSELM--------------LGME----LGLRTFKFFPAEASG 141 (212)
T ss_pred ECCCCCH------------HHHHHHHHcCCCEeCCCCCHHHHH--------------HHHH----CCCCEEEEccchhcc
Confidence 9877644 345667777776664444332211 2232 111223334632222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc--h-----HHHHHH
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK--P-----EFIDII 245 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~--~-----~F~~Ii 245 (251)
.+.+++ .||.- + +++++.=-|+|+++|+.+++... +-+.+||+.|- + +|.+|-
T Consensus 142 -----g~~~lk----~l~~p----~-----p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~~~~~~~~~i~ 201 (212)
T PRK05718 142 -----GVKMLK----ALAGP----F-----PDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDAIENGDWDRIT 201 (212)
T ss_pred -----CHHHHH----HHhcc----C-----CCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcchhccccHHHHH
Confidence 344443 33322 2 35899999999999999999977 55667777772 1 466555
Q ss_pred HHH
Q 025540 246 KSA 248 (251)
Q Consensus 246 ~~~ 248 (251)
+.+
T Consensus 202 ~~a 204 (212)
T PRK05718 202 RLA 204 (212)
T ss_pred HHH
Confidence 443
No 255
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=46.88 E-value=17 Score=33.88 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 178 ~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+|+++.+++..++ ...++---|+||++|+.+++. .+||.+-+|.--++
T Consensus 248 ~~e~l~~av~~~~------------~~~~lEaSGGIt~~ni~~yA~-tGVD~Is~Galths 295 (308)
T PLN02716 248 DVSMLKEAVELIN------------GRFETEASGNVTLDTVHKIGQ-TGVTYISSGALTHS 295 (308)
T ss_pred CHHHHHHHHHhhC------------CCceEEEECCCCHHHHHHHHH-cCCCEEEeCccccC
Confidence 5666666655443 235699999999999999875 89999999986664
No 256
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=46.67 E-value=1.3e+02 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=31.7
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccC-c-h-HHHHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-K-P-EFIDIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl-~-~-~F~~Ii~ 246 (251)
+++|+--|+| +++.+.+++. .+.|.+.||++.+ + + -|.+|.+
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHHh
Confidence 4788866666 7777888886 8999999999986 3 4 3566654
No 257
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=46.23 E-value=51 Score=23.93 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=38.4
Q ss_pred CCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 025540 71 KGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (251)
Q Consensus 71 ~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~ 133 (251)
..+...|.-.+..|.+.||+.+++|+= ++ .=.....+.|++++.+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~i------G~------~~~~~L~~~gI~v~~~~~~~i~ 86 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGI------GE------GAFRALKEAGIKVYQGAGGDIE 86 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCS------CH------HHHHHHHHTTSEEEESTSSBHH
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCC------CH------HHHHHHHHCCCEEEEcCCCCHH
Confidence 334477888899999999999999985 33 2345566789999998666543
No 258
>PRK08445 hypothetical protein; Provisional
Probab=45.82 E-value=2.6e+02 Score=26.23 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=87.8
Q ss_pred ccHHHHHhCCCCE-----EEeCchhhcccc---ccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHH
Q 025540 79 ISAEMLVNLEIPW-----VILGHSERRLIL---NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAA 146 (251)
Q Consensus 79 iS~~mLkd~G~~~-----viiGHSERR~~f---~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~ 146 (251)
=-...||++|++. ..+++.|-|+.+ .-|-+.--+-++.|.++||.. |+=.||+.++|-. ...
T Consensus 145 e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~------~l~ 218 (348)
T PRK08445 145 EVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIE------HWE 218 (348)
T ss_pred HHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHH------HHH
Confidence 3578899999984 456777777655 455555568899999999974 5667888777631 111
Q ss_pred HHHHHHhccCCCCCeE-EEEcccCccCCC--------CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCccc
Q 025540 147 QTKAIADRVSSWSNIV-LAYEPVWAIGTG--------KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN 217 (251)
Q Consensus 147 Ql~~~l~~i~~~~~~i-IAYEPvWAIGtG--------~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n 217 (251)
.|+.+-..-.....++ ..|-|. ||- ..+++++.-.+++.-|=.+. +++=+-++.++.+-
T Consensus 219 ~lreLq~~~~g~~~fi~~~~~p~---~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~---------~~~~i~a~~~~~g~ 286 (348)
T PRK08445 219 RIRDLQDETGGFRAFILWSFQPD---NTPLKEEIPEIKKQSSNRYLRLLAVSRLFLD---------NFKNIQSSWVTQGS 286 (348)
T ss_pred HHHHHHHHhCCeeEEeccccCCC---CCcccccCCCCCCCCHHHHHHHHHHHHHhCC---------CCCCccCCCcccCH
Confidence 2222211110112222 244442 332 23788888888888886542 23445566665543
Q ss_pred ----HHHHhcCCCCCEEEEc-------CccC--c-hHHHHHHHHH
Q 025540 218 ----CKELAAQPDVDGFLVG-------GASL--K-PEFIDIIKSA 248 (251)
Q Consensus 218 ----~~~l~~~~~vDG~LVG-------~asl--~-~~F~~Ii~~~ 248 (251)
..=.+...|+||.++. |+.. . ++...+|+.+
T Consensus 287 ~~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~ 331 (348)
T PRK08445 287 YIGQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDI 331 (348)
T ss_pred HHHHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHc
Confidence 2222346788999863 2222 2 4566666654
No 259
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.74 E-value=2.2e+02 Score=25.31 Aligned_cols=124 Identities=13% Similarity=0.249 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC-----CcHHHHHHHHHHHHhccCCCCCeEEEEcccC------------
Q 025540 107 NEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVW------------ 169 (251)
Q Consensus 107 d~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g-----~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvW------------ 169 (251)
|.....++..++...|.-+- -+..+.++++ +..+.+.++++..++.+ .++.+++|+|.|
T Consensus 117 dp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~ygl~~~ 192 (266)
T cd01018 117 SPANAKIMAENIYEALAELD--PQNATYYQANLDALLAELDALDSEIRTILSKL--KQRAFMVYHPAWGYFARDYGLTQI 192 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEECchhHHHHHHcCCEEE
Confidence 55566666666665554332 2333333222 11223444444444433 245678999988
Q ss_pred cc-CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-EEEccCCCcccHHHHhcCCCCCEEEEcCccCchHHHHHHHH
Q 025540 170 AI-GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR-IIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 247 (251)
Q Consensus 170 AI-GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~-ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~F~~Ii~~ 247 (251)
.+ +.|..+|+.++.++.+.||+. +++ |++==..++.-+..++...++.=+-+- .+..+|.++++.
T Consensus 193 ~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld--~~~~~y~~~m~~ 259 (266)
T cd01018 193 PIEEEGKEPSPADLKRLIDLAKEK-----------GVRVVFVQPQFSTKSAEAIAREIGAKVVTID--PLAADWEENLLK 259 (266)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeC--CcHHHHHHHHHH
Confidence 22 467889999999999999864 244 555566677777777777776433332 222467776654
No 260
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=45.55 E-value=32 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCccccCcceEEEccCCCcc------------cHHHHhcCCCCCEEEEcCccCc
Q 025540 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA------------NCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 183 ~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~------------n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+.+...||+...+. .+|+.+||+|+.- .+..++ ..++|=+.||++.++
T Consensus 300 ~~~~~~i~~i~~~~-------~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l-~~GadkV~i~s~Av~ 359 (538)
T PLN02617 300 LPMLEVLRRASENV-------FVPLTVGGGIRDFTDANGRYYSSLEVASEYF-RSGADKISIGSDAVY 359 (538)
T ss_pred hhHHHHHHHHHhhC-------CCCEEEcCCccccccccccccchHHHHHHHH-HcCCCEEEEChHHHh
Confidence 33456666654433 3999999999994 345554 489999999998886
No 261
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=45.53 E-value=2.2e+02 Score=25.98 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=62.0
Q ss_pred cHHHHHhCCCCEEE-eCc----hhhc-cccc--cChHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHH
Q 025540 80 SAEMLVNLEIPWVI-LGH----SERR-LILN--ELNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQ 147 (251)
Q Consensus 80 S~~mLkd~G~~~vi-iGH----SERR-~~f~--Etd~~i~~Kv~~al~~gl~pI----lCiGE~~~~r~~g~~~~~~~~Q 147 (251)
..+.||++|++.+. +|+ .+-| +++. -+.+..-+-++.|.+.|+.+. +=.||+.+++.. + ...
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~--~----l~~ 182 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVE--H----LLR 182 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHH--H----HHH
Confidence 47789999999775 342 2333 3433 255666688899999998764 223688877631 1 111
Q ss_pred HHHHHhccCCCCCeE-EEEcccCccCCC-------CCCCHHHHHHHHHHHHHHH
Q 025540 148 TKAIADRVSSWSNIV-LAYEPVWAIGTG-------KVATPAQAQEVHFELRKWL 193 (251)
Q Consensus 148 l~~~l~~i~~~~~~i-IAYEPvWAIGtG-------~~a~~e~i~~~~~~IR~~l 193 (251)
|+.+-........++ +.|-|. ||. .++++++.-.+++.-|=.+
T Consensus 183 lr~l~~~~~~f~~fiP~~f~~~---~t~~l~~~~~~~~~~~e~lr~iA~~Rl~l 233 (309)
T TIGR00423 183 IRKIQEKTGGFTEFIPLPFQPE---NNPYLEGEVRKGASGIDDLKVIAISRILL 233 (309)
T ss_pred HHhhchhhCCeeeEEeeeecCC---CChhhccCCCCCCCHHHHHHHHHHHHHhc
Confidence 222111111122333 566662 443 3578999988999888765
No 262
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.85 E-value=63 Score=26.40 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC-CCc-ccHH---HHhcCCCCCEEEEcCccCc
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS-VNG-ANCK---ELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS-V~~-~n~~---~l~~~~~vDG~LVG~asl~ 238 (251)
+.+.+.+.++.+.+|+. + ...++++.||. +.| +... +.+...++|.+|=+|..++
T Consensus 63 ~~~~~~~~~~~~~l~~~-----g---l~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~ 122 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA-----G---LEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPE 122 (134)
T ss_pred ccCHHHHHHHHHHHHHC-----C---CCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHH
Confidence 34677788888887763 1 23467888886 344 4432 2477788999999999764
No 263
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.63 E-value=1.8e+02 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc
Q 025540 110 VGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 110 i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
+.+-++..++.|..-|++.|.+
T Consensus 23 l~~l~~~l~~~Gv~gi~v~Gst 44 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGT 44 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCC
Confidence 3344555556666666666654
No 264
>PRK15108 biotin synthase; Provisional
Probab=44.44 E-value=2.7e+02 Score=26.04 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=86.4
Q ss_pred CccccccccHHHHHhCCCCEEEeCchhhcccc-----ccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHH
Q 025540 72 GGAFTGEISAEMLVNLEIPWVILGHSERRLIL-----NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMD 142 (251)
Q Consensus 72 ~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f-----~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~ 142 (251)
.|.-+ +=....||++|++.+-++.=-.+..| ..+-+..-+-++.|.+.|+.. |+=.||+.++|-
T Consensus 131 ~G~ls-~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v------ 203 (345)
T PRK15108 131 LGTLS-ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRA------ 203 (345)
T ss_pred CCcCC-HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHH------
Confidence 34333 55566778889998766332233333 245566677788888899832 222578887762
Q ss_pred HHHHHHHHHHhccCC-CCCeEEE-EcccCccCCC---C-CCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC-CCc
Q 025540 143 VVAAQTKAIADRVSS-WSNIVLA-YEPVWAIGTG---K-VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS-VNG 215 (251)
Q Consensus 143 ~~~~Ql~~~l~~i~~-~~~~iIA-YEPvWAIGtG---~-~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS-V~~ 215 (251)
+-+.. |..+.. ...+-+. +=|+- ||. . +.++.+.-.+++..|=.+-. ...-+-||= ..-
T Consensus 204 ---~~~~~-l~~l~~~~~~ip~~~~~P~~--gTpl~~~~~~~~~e~lr~iAi~Rl~lp~--------~~i~i~~g~~~~~ 269 (345)
T PRK15108 204 ---GLLLQ-LANLPTPPESVPINMLVKVK--GTPLADNDDVDAFDFIRTIAVARIMMPT--------SYVRLSAGREQMN 269 (345)
T ss_pred ---HHHHH-HHhccCCCCEEEeCCccCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCC--------ceeeecccHhHhC
Confidence 11111 122210 1111121 22322 552 2 25888888889888866422 122334444 223
Q ss_pred ccHHHHhcCCCCCEEEEcCccCc------hHHHHHHHHH
Q 025540 216 ANCKELAAQPDVDGFLVGGASLK------PEFIDIIKSA 248 (251)
Q Consensus 216 ~n~~~l~~~~~vDG~LVG~asl~------~~F~~Ii~~~ 248 (251)
.....++-..++|++++|.-.|. ++-.++|+.+
T Consensus 270 ~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~ 308 (345)
T PRK15108 270 EQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 308 (345)
T ss_pred hhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHc
Confidence 34567788889999999995432 3556666543
No 265
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=44.38 E-value=3e+02 Score=26.57 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=69.5
Q ss_pred HHHHHhCCCCEEEeC----chhhccccc--cChHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILG----HSERRLILN--ELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 81 ~~mLkd~G~~~viiG----HSERR~~f~--Etd~~i~~Kv~~al~~gl~pI-lC--iGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
.+.|+++|++.+-|| +.+-.+.++ -+-+.+.+-++.+.++|+..+ ++ +|= .|+|.+.+.+-++.+
T Consensus 154 l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl------Pgqt~e~~~~tl~~~ 227 (455)
T TIGR00538 154 IDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGL------PKQTKESFAKTLEKV 227 (455)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeC------CCCCHHHHHHHHHHH
Confidence 467888899999998 222222221 245667788999999998522 22 242 234555566666555
Q ss_pred HhccCCCCCeE-EEE--cccCc------cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc
Q 025540 152 ADRVSSWSNIV-LAY--EPVWA------IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG 215 (251)
Q Consensus 152 l~~i~~~~~~i-IAY--EPvWA------IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~ 215 (251)
++ +. ...+. ..| +| |. ++....+++++..++.+.+++.+.+.- . .-|+-|--.
T Consensus 228 ~~-l~-~~~is~y~L~~~p-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~G-------y-~~~~~~~fa 289 (455)
T TIGR00538 228 AE-LN-PDRLAVFNYAHVP-WVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAG-------Y-QFIGMDHFA 289 (455)
T ss_pred Hh-cC-CCEEEEecCcccc-chhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCC-------C-EEEecccee
Confidence 44 21 12221 122 44 32 444456788999999999998886531 2 456666533
No 266
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.26 E-value=20 Score=31.24 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=30.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc-CCCCCEEEE
Q 025540 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA-QPDVDGFLV 232 (251)
Q Consensus 171 IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~-~~~vDG~LV 232 (251)
=|||++-+-+.+++ . . ..|++..|+++|+|..+++. ...-+|+=|
T Consensus 136 GGtG~~~dw~~~~~-------~-~---------~~p~iLAGGL~peNV~~a~~~~~~p~gVDv 181 (207)
T PRK13958 136 GGTGQTYDWTILKH-------I-K---------DIPYLIAGGINSENIQTVEQLKLSHQGYDI 181 (207)
T ss_pred CcCCcEeChHHhhh-------c-c---------CCCEEEECCCCHHHHHHHHhcCCCCCEEEc
Confidence 47899887654431 1 0 14799999999999999764 334456544
No 267
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=43.95 E-value=72 Score=27.41 Aligned_cols=106 Identities=17% Similarity=0.076 Sum_probs=58.8
Q ss_pred eEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHHH
Q 025540 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEML 84 (251)
Q Consensus 5 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL 84 (251)
++..++||.+...+....|++.+.+.......+...|-|-+|..... .+-.+|.=|+-+.-+ -..|
T Consensus 30 ~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~------d~~ivG~i~lRh~Ln--------~~ll 95 (174)
T COG3981 30 TEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDE------DGQIVGFINLRHQLN--------DFLL 95 (174)
T ss_pred cccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEec------CCcEEEEEEeeeecc--------hHHH
Confidence 34556888876556667777765542111111223344444443332 133466666654322 1222
Q ss_pred HhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE
Q 025540 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126 (251)
Q Consensus 85 kd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl 126 (251)
...|==.-=|=-||||+-++. +++..-+..|.+.||++|+
T Consensus 96 ~~gGHIGY~VrPseR~KGYA~--emLkl~L~~ar~lgi~~Vl 135 (174)
T COG3981 96 EEGGHIGYSVRPSERRKGYAK--EMLKLALEKARELGIKKVL 135 (174)
T ss_pred hcCCcccceeChhhhccCHHH--HHHHHHHHHHHHcCCCeEE
Confidence 222211111334999998876 7899999999999999765
No 268
>PRK08999 hypothetical protein; Provisional
Probab=43.69 E-value=89 Score=28.29 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=42.5
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
.-.+|..=|+|.-.|-....+- -.+.++++.. ..++||+--|+++++|+.++.. .++||+-+=|+
T Consensus 246 ~~dyi~~gpvf~t~tk~~~~~~----g~~~~~~~~~-------~~~~Pv~AiGGI~~~~~~~~~~-~g~~gva~i~~ 310 (312)
T PRK08999 246 GVDFAVLSPVQPTASHPGAAPL----GWEGFAALIA-------GVPLPVYALGGLGPGDLEEARE-HGAQGIAGIRG 310 (312)
T ss_pred CCCEEEECCCcCCCCCCCCCCC----CHHHHHHHHH-------hCCCCEEEECCCCHHHHHHHHH-hCCCEEEEEEE
Confidence 3468899999988763111111 1123333322 1248999999999999988666 58999977654
No 269
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=43.53 E-value=6.4 Score=28.78 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCcceEEEcc
Q 025540 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (251)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGG 211 (251)
+.+++-+++.-..+.++.|+.++.++-||||-
T Consensus 22 d~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~ 53 (70)
T PF04210_consen 22 DEIEEKVEFTNAEIAQRAGKKIGRDIGILYGL 53 (70)
T ss_pred HHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHH
Confidence 44566666666778888888999999999994
No 270
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=43.52 E-value=1.4e+02 Score=26.84 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEcccCc---------------cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-
Q 025540 143 VVAAQTKAIADRVSSWSNIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR- 206 (251)
Q Consensus 143 ~~~~Ql~~~l~~i~~~~~~iIAYEPvWA---------------IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~- 206 (251)
.+.++++..++.+ ..+.+++|+|.|- +.+|..+++.++.++.+.||+. +++
T Consensus 157 ~l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~ 223 (282)
T cd01017 157 ALDQEYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS-----------DVKY 223 (282)
T ss_pred HHHHHHHHHHhcc--CCCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHc-----------CCCE
Confidence 3444444444433 2355789998764 3468899999999999999864 344
Q ss_pred EEEccCCCcccHHHHhcCCCCC
Q 025540 207 IIYGGSVNGANCKELAAQPDVD 228 (251)
Q Consensus 207 ilYGGSV~~~n~~~l~~~~~vD 228 (251)
|++-=.+++.-+..++...++.
T Consensus 224 if~e~~~~~~~~~~la~~~g~~ 245 (282)
T cd01017 224 IFFEENASSKIAETLAKETGAK 245 (282)
T ss_pred EEEeCCCChHHHHHHHHHcCCc
Confidence 5556667777777777777654
No 271
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=43.13 E-value=19 Score=27.50 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=43.9
Q ss_pred EEEeCCcHHHHhcCCcHHHHHHHHHH-HHhccC--CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 025540 125 IACVGETLEQREAGSTMDVVAAQTKA-IADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEI 201 (251)
Q Consensus 125 IlCiGE~~~~r~~g~~~~~~~~Ql~~-~l~~i~--~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~ 201 (251)
++++|+..- .++..+.+.+-|.. +|+ .+ ..+.++|-.- .|...+..+++++.+.||+.+
T Consensus 4 ~iGiG~a~G---~~r~~~Av~~Al~spLl~-~~i~~A~~vLvni~------~~~d~~l~ev~~~~~~i~~~~-------- 65 (95)
T PF12327_consen 4 MIGIGEASG---ENRAEEAVEQALNSPLLD-VDIKGAKGVLVNIT------GGPDLSLSEVNEAMEIIREKA-------- 65 (95)
T ss_dssp EEEEEEEES---TTHHHHHHHHHHTSTTST-S-GGG-SEEEEEEE------E-TTS-HHHHHHHHHHHHHHS--------
T ss_pred EEEEEEECC---ccHHHHHHHHHHhCcccc-CChHHhceEEEEEE------cCCCCCHHHHHHHHHHHHHHh--------
Confidence 566666521 11234444444432 333 22 3566766543 356689999999999999875
Q ss_pred cCcceEEEccCCCcc
Q 025540 202 AAATRIIYGGSVNGA 216 (251)
Q Consensus 202 ~~~i~ilYGGSV~~~ 216 (251)
.++..|++|-+++++
T Consensus 66 ~~~a~ii~G~~id~~ 80 (95)
T PF12327_consen 66 DPDANIIWGASIDEE 80 (95)
T ss_dssp STTSEEEEEEEE-TT
T ss_pred hcCceEEEEEEECCC
Confidence 356899999998764
No 272
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=43.04 E-value=30 Score=32.94 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=33.6
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~ 243 (251)
++||+--|++ +++.+.+.+....+|.+.+|++.+. |+|..
T Consensus 305 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 346 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHH
Confidence 3789998988 6677888888888999999999997 77644
No 273
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.02 E-value=1.6e+02 Score=26.65 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCeEEEEcccC---------------ccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-EEEccCCCcccHHHHh
Q 025540 159 SNIVLAYEPVW---------------AIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR-IIYGGSVNGANCKELA 222 (251)
Q Consensus 159 ~~~iIAYEPvW---------------AIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~-ilYGGSV~~~n~~~l~ 222 (251)
.+.++.|.|.| .+.++..+||.++.++.+.||+. +++ |+|=-.++..-+..+.
T Consensus 179 ~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~If~e~~~~~~~~~~ia 247 (286)
T cd01019 179 TKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEK-----------GATCVFAEPQFHPKIAETLA 247 (286)
T ss_pred CCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHc-----------CCcEEEecCCCChHHHHHHH
Confidence 45678899987 34578889999999999999864 344 5566777888888888
Q ss_pred cCCCCC
Q 025540 223 AQPDVD 228 (251)
Q Consensus 223 ~~~~vD 228 (251)
...++.
T Consensus 248 ~~~g~~ 253 (286)
T cd01019 248 EGTGAK 253 (286)
T ss_pred HhcCce
Confidence 777753
No 274
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=42.92 E-value=39 Score=33.25 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC-CCEEEEcCccCc
Q 025540 174 GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD-VDGFLVGGASLK 238 (251)
Q Consensus 174 G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~-vDG~LVG~asl~ 238 (251)
|.-.+.-+.......+|+.+.+.. -++++|+++|+++.+-+.++..+.. +|++-||+.-+.
T Consensus 260 gVRlDSGDl~~l~~~vr~~ld~~G----~~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~ 321 (464)
T PRK09243 260 GVRIDSGDLAYLSKKVRKMLDEAG----FTDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVT 321 (464)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHCC----CCCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccC
Confidence 334444445566667777777653 3569999999999999999875444 899999997543
No 275
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=42.80 E-value=6.4 Score=29.33 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
+++++-+++--..+.++.|+.+++++-||||.-
T Consensus 25 D~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~v 57 (77)
T PRK01026 25 DEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLV 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 344555555566677888889999999999963
No 276
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=42.73 E-value=58 Score=28.63 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=31.3
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 248 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~~~ 248 (251)
+|+.+||+++.-...+.+-..++|=+.||...++ +-+.++++.+
T Consensus 79 ~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 79 LGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAAL 123 (233)
T ss_pred CCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhc
Confidence 8999999999944444444478999999998886 3344454443
No 277
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.49 E-value=1.3e+02 Score=27.37 Aligned_cols=111 Identities=22% Similarity=0.203 Sum_probs=67.8
Q ss_pred CceEEE--EecccCCCHHHHHHHHHHhhcc--------------CCCCCCceeEEEcCccccHHHHHhhcCCCceEeeec
Q 025540 3 RKFFVG--GNWKCNGTPEEVKKIVSVLNEG--------------QVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQN 66 (251)
Q Consensus 3 r~~~i~--~NwKmn~~~~~~~~~~~~l~~~--------------~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn 66 (251)
|+++.. -||..-.+.+++.+.+..+.+. ..+....+-+=+.||.-.+....+..-. +.
T Consensus 101 RP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p------~~ 174 (257)
T COG2099 101 RPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVP------PA 174 (257)
T ss_pred CCccccCCCceEEecCHHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCC------hh
Confidence 344444 7898888888888877755220 0001111223344554444433322111 11
Q ss_pred ccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE
Q 025540 67 CWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126 (251)
Q Consensus 67 ~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl 126 (251)
--..-.|+|+=|--..||.+.+|++++-=-| |++- --..|+.+|.+.|+.+|+
T Consensus 175 ~Iia~~GPfs~~~n~all~q~~id~vItK~S------G~~G-g~~~Ki~aA~eLgi~VI~ 227 (257)
T COG2099 175 RIIAMRGPFSEEDNKALLEQYRIDVVVTKNS------GGAG-GTYEKIEAARELGIPVIM 227 (257)
T ss_pred hEEEecCCcChHHHHHHHHHhCCCEEEEccC------Cccc-CcHHHHHHHHHcCCcEEE
Confidence 1123579999999999999999999997555 2220 122799999999999886
No 278
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.41 E-value=2.3e+02 Score=24.59 Aligned_cols=155 Identities=22% Similarity=0.196 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEEEcCcc------ccHHHHHhhcC---CCceEeeecccccCCccccccccHHHHHh
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF------VFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEISAEMLVN 86 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~------~~L~~~~~~~~---~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd 86 (251)
+.++..++++.+.+.-. +.+++....|+ .....+.+.+. .+..+.+= .. +|+--.+.+++
T Consensus 17 s~e~~~~i~~~L~~~GV---~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l----~~----~~~~~i~~a~~ 85 (265)
T cd03174 17 STEDKLEIAEALDEAGV---DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQAL----VR----NREKGIERALE 85 (265)
T ss_pred CHHHHHHHHHHHHHcCC---CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEE----cc----CchhhHHHHHh
Confidence 68888898888876322 34666655554 44444433333 12333221 11 13667899999
Q ss_pred CCCCEEEeCch--hhc------cccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 025540 87 LEIPWVILGHS--ERR------LILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (251)
Q Consensus 87 ~G~~~viiGHS--ERR------~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~ 158 (251)
.|++.+-+--+ +-+ +--.+.-+.+-.-++.+.+.|+.+.+++-....- ..+.+.+.+.++.+.+ .
T Consensus 86 ~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~---~~~~~~l~~~~~~~~~----~ 158 (265)
T cd03174 86 AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC---KTDPEYVLEVAKALEE----A 158 (265)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC---CCCHHHHHHHHHHHHH----c
Confidence 99888866532 211 1111234556788889999999999888433210 1355556655555443 2
Q ss_pred CCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHH
Q 025540 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l 193 (251)
....|-+-+. +| .++|+++.+.++.+|+..
T Consensus 159 g~~~i~l~Dt----~G-~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 159 GADEISLKDT----VG-LATPEEVAELVKALREAL 188 (265)
T ss_pred CCCEEEechh----cC-CcCHHHHHHHHHHHHHhC
Confidence 2223333332 23 589999999999999763
No 279
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=42.10 E-value=32 Score=27.77 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEeCchhhccccccChHHHHHHHHHHHH-CCCeEEEE
Q 025540 92 VILGHSERRLILNELNEFVGDKVAYALS-QGLKVIAC 127 (251)
Q Consensus 92 viiGHSERR~~f~Etd~~i~~Kv~~al~-~gl~pIlC 127 (251)
|+|||| | |..++.+++..|+ .|+.|++=
T Consensus 2 VFIvhg-~-------~~~~~~~v~~~L~~~~~ep~i~ 30 (125)
T PF10137_consen 2 VFIVHG-R-------DLAAAEAVERFLEKLGLEPIIW 30 (125)
T ss_pred EEEEeC-C-------CHHHHHHHHHHHHhCCCceEEe
Confidence 789999 3 2457778888888 79999863
No 280
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=42.09 E-value=2.2e+02 Score=27.08 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=59.5
Q ss_pred CceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccc--
Q 025540 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI-- 79 (251)
Q Consensus 3 r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGei-- 79 (251)
+++++++|= -.+.+++.+.++...+.- .+ -+++.||+..+........ .++. -..|+...|+||..-
T Consensus 197 ~~~~y~~ni--t~~~~e~i~~a~~a~~~G----ad-~vmv~~~~~g~~~~~~l~~~~~lp---i~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 197 RKTLYAPNI--TGDPDELRRRADRAVEAG----AN-ALLINPNLVGLDALRALAEDPDLP---IMAHPAFAGALSRSPDY 266 (367)
T ss_pred CcceEEEEc--CCCHHHHHHHHHHHHHcC----CC-EEEEecccccccHHHHHHhcCCCe---EEEccCcccccccCCCC
Confidence 456777773 344577777776554421 12 3778888777655444332 2222 234777888888421
Q ss_pred ------cHHHHHhCCCCEEEeCchhhccccccChHHHHHH
Q 025540 80 ------SAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113 (251)
Q Consensus 80 ------S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~K 113 (251)
-..+.+-.|++.++.|..-- -|..+++.+.+=
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~~~~g--k~~~~~~~~~~l 304 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFPGPGG--RFPFSREECLAI 304 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccCCCcc--CcCCCHHHHHHH
Confidence 12367778999999988754 466777655543
No 281
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=42.00 E-value=2.4e+02 Score=24.77 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=97.4
Q ss_pred CCCceEEEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccH------HHHHhhcCCCceEeeecccccCCcc
Q 025540 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFL------GLVKSSLRPGFHVAAQNCWVKKGGA 74 (251)
Q Consensus 1 m~r~~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L------~~~~~~~~~~i~vgAQn~~~~~~Ga 74 (251)
|.+++++++= =..+.+++.++++.+... . .-++ |-+|..+- ..+++.+ ++..|-+ |+-..|-|.
T Consensus 1 ~~~~~livAL--D~~~~~~A~~l~~~l~~~-v---~~iK--VG~~L~~~~G~~~i~~lk~~~-~~~~Ifl-DlKl~DIp~ 70 (218)
T PRK13305 1 MSRPLLQLAL--DHTSLEAAQRDVTLLKDH-V---DIVE--AGTILCLNEGLGAVKALREQC-PDKIIVA-DWKVADAGE 70 (218)
T ss_pred CCCCCEEEEe--CCCCHHHHHHHHHHcccc-C---CEEE--ECHHHHHHhCHHHHHHHHHhC-CCCEEEE-EeecccChH
Confidence 4334444442 234578888888876542 1 1233 33443332 2233322 2333442 556667776
Q ss_pred ccccccHHHHHhCCCC-EEEeCchhhccccccChHHHHHHHHHHHHCCCe---EEEEeCCcHHH-H---hcCCcHHHHHH
Q 025540 75 FTGEISAEMLVNLEIP-WVILGHSERRLILNELNEFVGDKVAYALSQGLK---VIACVGETLEQ-R---EAGSTMDVVAA 146 (251)
Q Consensus 75 ~TGeiS~~mLkd~G~~-~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~---pIlCiGE~~~~-r---~~g~~~~~~~~ 146 (251)
+..+ ++.++|++ .++++|+. ++++..-++.+.+.|-. -++.| .|.+. + +.|-. +++.
T Consensus 71 tv~~----~~~~~Gad~~tv~~~~g--------~~~i~~a~~~a~~~~~~~~~~llgV-~t~~~~~~l~~~g~~-~~v~- 135 (218)
T PRK13305 71 TLAQ----QAFGAGANWMTIICAAP--------LATVEKGHAVAQRCGGEIQIELFGN-WTLDDARDWHRIGVR-QAIY- 135 (218)
T ss_pred HHHH----HHHHcCCCEEEEecCCC--------HHHHHHHHHHHHhcCCcccceEEEe-cCcchHHHHHHcCCH-HHHH-
Confidence 6443 67899995 55566653 34555555545553422 34444 12211 1 22221 1110
Q ss_pred HHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC
Q 025540 147 QTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 226 (251)
Q Consensus 147 Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~ 226 (251)
. +.. .|. -+|...||.++. .||+.. +.+.++.--|+|+++.+ ....|..
T Consensus 136 h----~a~--------~a~------~~G~v~s~~e~~----~ir~~~--------~~~~~i~VtpGIr~~~~-~~~dq~r 184 (218)
T PRK13305 136 H----RGR--------DAQ------ASGQQWGEADLA----RMKALS--------DIGLELSITGGITPADL-PLFKDIR 184 (218)
T ss_pred H----HHH--------HHH------HhCCCCCHHHHH----HHHHHh--------CCCCcEEEeCCcCcccc-ccccccC
Confidence 0 110 011 123477888876 555543 23466788899999888 4568899
Q ss_pred CCEEEEcCccCc
Q 025540 227 VDGFLVGGASLK 238 (251)
Q Consensus 227 vDG~LVG~asl~ 238 (251)
+|-+.|||+-.+
T Consensus 185 vd~iVVGR~It~ 196 (218)
T PRK13305 185 VKAFIAGRALAG 196 (218)
T ss_pred CCEEEECCcccC
Confidence 999999998886
No 282
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=41.57 E-value=6.6 Score=28.68 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCcceEEEccCC
Q 025540 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV 213 (251)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV 213 (251)
+++++-+++.-..+.++.|+.++.++-||||.-+
T Consensus 22 d~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~vi 55 (70)
T TIGR01149 22 DEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVI 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence 4455555666666778888889999999999643
No 283
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=41.43 E-value=1.8e+02 Score=26.63 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHC--CCe-----EEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC------CCeEEEEcc
Q 025540 114 VAYALSQ--GLK-----VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW------SNIVLAYEP 167 (251)
Q Consensus 114 v~~al~~--gl~-----pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~------~~~iIAYEP 167 (251)
+.+|++. |.. ..+.+.+..-.++-+++.+...+++...++..... ..+.+-|++
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~ 147 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSP 147 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECC
Confidence 6677776 442 34445555556677899988888887776543211 124567776
No 284
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=41.28 E-value=18 Score=33.91 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=35.0
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHH-HHHHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEF-IDIIK 246 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F-~~Ii~ 246 (251)
++||+.-|++ +++.+.+++..-.+|.+.+|++.+- |+| .++.+
T Consensus 275 ~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 275 NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 4899999997 5788999999888999999999996 765 44433
No 285
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.18 E-value=2.2e+02 Score=26.99 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCeE---EEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 025540 112 DKVAYALSQGLKV---IACVGETLEQREAGSTMDVVAAQTKAIADR 154 (251)
Q Consensus 112 ~Kv~~al~~gl~p---IlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~ 154 (251)
+=+++|++.|... .+++-+....++.+.+.+...+++..+++.
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~ 170 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALA 170 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4466788888763 344455555666778888777777666653
No 286
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=40.94 E-value=2.3e+02 Score=27.10 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=75.4
Q ss_pred ceEeeecccccCC---ccccccccHHHHHhCCCCEEEe--Cchhhccc-------c-ccChHHHHHHHHHHHHCCCeEEE
Q 025540 60 FHVAAQNCWVKKG---GAFTGEISAEMLVNLEIPWVIL--GHSERRLI-------L-NELNEFVGDKVAYALSQGLKVIA 126 (251)
Q Consensus 60 i~vgAQn~~~~~~---Ga~TGeiS~~mLkd~G~~~vii--GHSERR~~-------f-~Etd~~i~~Kv~~al~~gl~pIl 126 (251)
+.+|..+++.... |.++.+-....+|+.|.++|=| |+..-+.. . .+....+.+.|..|.+.||.+++
T Consensus 55 ~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~i 134 (407)
T COG2730 55 LNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLI 134 (407)
T ss_pred eecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEE
Confidence 4566665554433 4457899999999999998843 33221222 2 22333677779999999998887
Q ss_pred E--------eCCcHHHHhcCCcH-HHHHHHHHHHHhcc----CCCCCeE---EEEcccCccCCCCCCCHHHHHHHHHHHH
Q 025540 127 C--------VGETLEQREAGSTM-DVVAAQTKAIADRV----SSWSNIV---LAYEPVWAIGTGKVATPAQAQEVHFELR 190 (251)
Q Consensus 127 C--------iGE~~~~r~~g~~~-~~~~~Ql~~~l~~i----~~~~~~i---IAYEPvWAIGtG~~a~~e~i~~~~~~IR 190 (251)
= .+.........-.. +.-.++.......+ ...+.++ ++.||.+ |++....+-.. .+++..||
T Consensus 135 D~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~~-~~A~~~v~ 212 (407)
T COG2730 135 DLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGGD-DEAYDVVR 212 (407)
T ss_pred EecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccch-HHHHHHHH
Confidence 4 33322221111111 11112222222222 2233433 7999999 88777665444 77888887
Q ss_pred HHHHh
Q 025540 191 KWLLA 195 (251)
Q Consensus 191 ~~l~~ 195 (251)
+.+..
T Consensus 213 ~~i~~ 217 (407)
T COG2730 213 NAILS 217 (407)
T ss_pred hhhhh
Confidence 55543
No 287
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=40.83 E-value=44 Score=30.27 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=93.7
Q ss_pred cccCCccccccc---cHHHHHhCC-CCEE---EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCc
Q 025540 68 WVKKGGAFTGEI---SAEMLVNLE-IPWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGST 140 (251)
Q Consensus 68 ~~~~~Ga~TGei---S~~mLkd~G-~~~v---iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~ 140 (251)
=++..|+||.|= .+.|-+|++ .+|+ +|||+ |.++-+.-+++ +-.+...+.|+++.--+.+..
T Consensus 73 LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~--~tLlPD~~etl-~Aae~Lv~eGF~VlPY~~dD~-------- 141 (262)
T COG2022 73 LPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDE--KTLLPDPIETL-KAAEQLVKEGFVVLPYTTDDP-------- 141 (262)
T ss_pred CCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCC--cccCCChHHHH-HHHHHHHhCCCEEeeccCCCH--------
Confidence 367889999883 677888876 4555 45554 66666665544 556777899999987666654
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcccCc--cCCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCccc
Q 025540 141 MDVVAAQTKAIADRVSSWSNIVLAYEPVWA--IGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN 217 (251)
Q Consensus 141 ~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWA--IGtG~~a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n 217 (251)
++.++|.. +. .-|-=| |+ ||||.-. ++.-++ .|++. + ++||+--.++..--
T Consensus 142 --v~arrLee----~G-----caavMP-l~aPIGSg~G~~n~~~l~----iiie~---------a-~VPviVDAGiG~pS 195 (262)
T COG2022 142 --VLARRLEE----AG-----CAAVMP-LGAPIGSGLGLQNPYNLE----IIIEE---------A-DVPVIVDAGIGTPS 195 (262)
T ss_pred --HHHHHHHh----cC-----ceEecc-ccccccCCcCcCCHHHHH----HHHHh---------C-CCCEEEeCCCCChh
Confidence 34444433 21 123323 43 8999986 555444 44443 2 58999988888777
Q ss_pred HHHHhcCCCCCEEEEcCccCc-hHHHHHH
Q 025540 218 CKELAAQPDVDGFLVGGASLK-PEFIDII 245 (251)
Q Consensus 218 ~~~l~~~~~vDG~LVG~asl~-~~F~~Ii 245 (251)
....+-+.++|++|+-.|.-. .+-..+.
T Consensus 196 dAa~aMElG~DaVL~NTAiA~A~DPv~MA 224 (262)
T COG2022 196 DAAQAMELGADAVLLNTAIARAKDPVAMA 224 (262)
T ss_pred HHHHHHhcccceeehhhHhhccCChHHHH
Confidence 777888899999999987665 3433333
No 288
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=40.52 E-value=3.5e+02 Score=26.15 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=104.4
Q ss_pred EEecccCCCHHHHHHHHHHhhccCCCCCC--ceeEEEcCccccHHHHHhhc--C-CCceEeeecccccCCccccccccHH
Q 025540 8 GGNWKCNGTPEEVKKIVSVLNEGQVPSSD--VVEVVVSPPFVFLGLVKSSL--R-PGFHVAAQNCWVKKGGAFTGEISAE 82 (251)
Q Consensus 8 ~~NwKmn~~~~~~~~~~~~l~~~~~~~~~--~~~v~i~Pp~~~L~~~~~~~--~-~~i~vgAQn~~~~~~Ga~TGeiS~~ 82 (251)
+|==..-.+.++...+++.+.+......+ .+.+=+.|-......+...- . ..+++|-|..+ .+
T Consensus 94 GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~------------~~ 161 (416)
T COG0635 94 GGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFN------------DE 161 (416)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCC------------HH
Confidence 33333446678888888888764311112 24455688777776654322 2 67899999977 45
Q ss_pred HHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHHHhccC-CC
Q 025540 83 MLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAIADRVS-SW 158 (251)
Q Consensus 83 mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC---iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~-~~ 158 (251)
+||-+| |++ +.+.+...+..+.+.|+..|=| .|- -++|.+.+.+-|+.+++--+ ..
T Consensus 162 ~lk~lg----------R~h----~~~~~~~a~~~~~~~g~~~in~DLIygl------P~QT~~~~~~~l~~a~~l~pdhi 221 (416)
T COG0635 162 VLKALG----------RIH----DEEEAKEAVELARKAGFTSINIDLIYGL------PGQTLESLKEDLEQALELGPDHL 221 (416)
T ss_pred HHHHhc----------CCC----CHHHHHHHHHHHHHcCCCcEEEEeecCC------CCCCHHHHHHHHHHHHhCCCCEE
Confidence 677764 433 4456678999999999887743 343 36788888888888776322 23
Q ss_pred CCeEEEEcccCccCC----CC-CCCHHHHHHHHHHHHHHHHhc
Q 025540 159 SNIVLAYEPVWAIGT----GK-VATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 159 ~~~iIAYEPvWAIGt----G~-~a~~e~i~~~~~~IR~~l~~~ 196 (251)
+---++.||-|...- |+ .+++++..++++.+++.|.+.
T Consensus 222 s~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~ 264 (416)
T COG0635 222 SLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKA 264 (416)
T ss_pred EEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHC
Confidence 334488999887652 33 467888889999999998764
No 289
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=40.09 E-value=2.2e+02 Score=29.68 Aligned_cols=118 Identities=17% Similarity=0.070 Sum_probs=64.8
Q ss_pred HhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 025540 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (251)
Q Consensus 85 kd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIA 164 (251)
+.+|++.|++=-+ .+ +++.+..=+..|.+.||.+++=|=...| ++.+++ ...-+|.
T Consensus 130 ~~~GADavLLI~~----~L--~~~~l~~l~~~a~~lGme~LvEvh~~~e--------------l~~a~~----~ga~iiG 185 (695)
T PRK13802 130 RAHGADLVLLIVA----AL--DDAQLKHLLDLAHELGMTVLVETHTREE--------------IERAIA----AGAKVIG 185 (695)
T ss_pred HHcCCCEeehhHh----hc--CHHHHHHHHHHHHHcCCeEEEEeCCHHH--------------HHHHHh----CCCCEEE
Confidence 3457777765332 12 3457888889999999999997764332 223343 1111221
Q ss_pred EcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hH
Q 025540 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE 240 (251)
Q Consensus 165 YEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~ 240 (251)
.== |-.-|= ..+++... .|+..+ ..++.++--++|+.......+...++||+|||.+-++ ++
T Consensus 186 INn-RdL~tf-~vd~~~t~----~L~~~i--------p~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~d 248 (695)
T PRK13802 186 INA-RNLKDL-KVDVNKYN----ELAADL--------PDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADD 248 (695)
T ss_pred EeC-CCCccc-eeCHHHHH----HHHhhC--------CCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCC
Confidence 100 000000 01233222 233332 1235566667777666666666789999999999887 44
No 290
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=40.03 E-value=3.5e+02 Score=26.01 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=64.2
Q ss_pred cHHHHHhCCCCEEEeCc----h-hhccc-cccChHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHHH
Q 025540 80 SAEMLVNLEIPWVILGH----S-ERRLI-LNELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 80 S~~mLkd~G~~~viiGH----S-ERR~~-f~Etd~~i~~Kv~~al~~gl~pI-lC--iGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
-...|+++|++.+-+|= . +.+.+ -+.+-+.+.+.++.+.+.|+..| ++ +|=+ |+|.+.+.+-++.
T Consensus 143 ~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP------~qt~e~~~~~l~~ 216 (430)
T PRK08208 143 KLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP------GQTHASWMESLDQ 216 (430)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHH
Confidence 34677889999999982 1 11111 12367788899999999999764 22 3432 4566666666666
Q ss_pred HHhccCCCCCeE---EEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 151 IADRVSSWSNIV---LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 151 ~l~~i~~~~~~i---IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
+++ +. ...+. +-.+|-=.++.-..++.+...++.+.+++.+.+.
T Consensus 217 ~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~ 263 (430)
T PRK08208 217 ALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEA 263 (430)
T ss_pred HHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHc
Confidence 554 21 11111 2223422222222245677788999999988764
No 291
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=39.94 E-value=2.2e+02 Score=25.91 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHH
Q 025540 106 LNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEV 185 (251)
Q Consensus 106 td~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~ 185 (251)
+-+-+.+-++..+++|..-|++.|.+ |-+-..|.++=.++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gst----------------------------------------GE~~~Lt~eEr~~~ 65 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGT----------------------------------------GEFFSLTPDEYSQV 65 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC----------------------------------------cCcccCCHHHHHHH
Q ss_pred HHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc---CCCCCEEEE
Q 025540 186 HFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA---QPDVDGFLV 232 (251)
Q Consensus 186 ~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~---~~~vDG~LV 232 (251)
++..++.. +..+||+.|-+-+..++.+++. ..++||+++
T Consensus 66 ~~~~~~~~--------~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 66 VRAAVETT--------AGRVPVIAGAGGGTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHh--------CCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEE
No 292
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=39.83 E-value=19 Score=32.53 Aligned_cols=144 Identities=18% Similarity=0.233 Sum_probs=81.2
Q ss_pred HHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE--e
Q 025540 52 VKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC--V 128 (251)
Q Consensus 52 ~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC--i 128 (251)
+++.+. ..-.+|...-- .-+| ++|.+.-.|-+|++|-- |+ -.-+.+.+...+.++...+..||+= +
T Consensus 8 fK~~L~~g~~qiGlw~~l---~~p~----~~Ei~A~aGfDwl~iD~-EH---apnd~~sl~~qL~a~~~~~~~pvVR~p~ 76 (255)
T COG3836 8 FKAALAAGRPQIGLWLSL---PDPY----MAEILATAGFDWLLIDG-EH---APNDLQSLLHQLQAVAAYASPPVVRPPV 76 (255)
T ss_pred HHHHHhCCCceEEeeecC---CcHH----HHHHHHhcCCCEEEecc-cc---cCccHHHHHHHHHHhhccCCCCeeeCCC
Confidence 334444 44556665522 1224 45667778999988841 11 1124556778899999999999998 7
Q ss_pred CCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHH------------------
Q 025540 129 GETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR------------------ 190 (251)
Q Consensus 129 GE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR------------------ 190 (251)
|++. +++.+|+- . .+.++| ..+-|.|+++++++..|
T Consensus 77 g~~~--------------~Ikq~LD~-G-Aqtlli----------PmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr 130 (255)
T COG3836 77 GDPV--------------MIKQLLDI-G-AQTLLI----------PMVDTAEQARQAVAATRYPPLGERGVGSALARASR 130 (255)
T ss_pred CCHH--------------HHHHHHcc-c-cceeee----------eccCCHHHHHHHHHhccCCCCCccccchhhhhhhh
Confidence 7764 33344431 1 122222 12345555555555443
Q ss_pred -----HHHHhcCCccccCcceEE--EccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 191 -----KWLLANTSPEIAAATRII--YGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 191 -----~~l~~~~~~~~~~~i~il--YGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
+++.. .++++-+| --=----+|..+++...+|||+|||=+-|
T Consensus 131 ~~~i~dyl~~-----An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDL 179 (255)
T COG3836 131 FGRIADYLAQ-----ANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADL 179 (255)
T ss_pred cCCHHHHHHh-----cccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHH
Confidence 12211 12232222 11122347889999999999999997654
No 293
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=39.57 E-value=3.1e+02 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccCc--h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK--P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl~--~-~F~~Ii~~~ 248 (251)
+++|+--|+|. .+.+.+++. .+.|++-||++.+. + -+.+|++.+
T Consensus 239 ~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 239 GADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 48888666665 556666664 99999999999887 3 345566554
No 294
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.97 E-value=1.9e+02 Score=25.57 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHHHHh--cCCcHHHHHHHHHHHHhccCCCCCeEEEEccc
Q 025540 108 EFVGDKVAYALSQGLKVIACVGETLEQRE--AGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV 168 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlCiGE~~~~r~--~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPv 168 (251)
+.+.+-++.|.+.|-..|. ++....... ..+..+.+.+.++.+.+.- ....+.|++||.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A-~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQ-LAGYDVYYEEHDEETRRRFREGLKEAVELA-ARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEE-ecCcccccCcCCHHHHHHHHHHHHHHHHHH-HHcCCEEEEeeC
Confidence 4455667777777876554 332210000 0011223333443333211 123578888875
No 295
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.81 E-value=88 Score=25.23 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+.+.+.++++.+|+. + .+.++|+-||-.- ....+-+...++|+++==|..+.
T Consensus 65 ~~~~~~~~~~~~L~~~-----g---~~~i~vivGG~~~-~~~~~~l~~~Gvd~~~~~gt~~~ 117 (132)
T TIGR00640 65 GHLTLVPALRKELDKL-----G---RPDILVVVGGVIP-PQDFDELKEMGVAEIFGPGTPIP 117 (132)
T ss_pred hhHHHHHHHHHHHHhc-----C---CCCCEEEEeCCCC-hHhHHHHHHCCCCEEECCCCCHH
Confidence 4566777777666653 1 2357777777664 44455677899999998887664
No 296
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=38.60 E-value=1.4e+02 Score=29.26 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=51.8
Q ss_pred CCCeEEEEcccCccCCCCC-C---CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 158 WSNIVLAYEPVWAIGTGKV-A---TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 158 ~~~~iIAYEPvWAIGtG~~-a---~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
....+|+.=|+|.--|-.. . ..+.+.++.+.+... .+. ....+|++-=|+++++|+.++. ..++||+-|=
T Consensus 319 ~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~---~~~--~~~~iPVVAIGGI~~~Ni~~vl-~aGa~GVAVV 392 (437)
T PRK12290 319 IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTI---PYQ--GQTGFPTVAIGGIDQSNAEQVW-QCGVSSLAVV 392 (437)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhc---ccc--ccCCCCEEEECCcCHHHHHHHH-HcCCCEEEEe
Confidence 4568999999999977542 2 344444443333211 111 1235899999999999998887 4799999999
Q ss_pred CccCc
Q 025540 234 GASLK 238 (251)
Q Consensus 234 ~asl~ 238 (251)
++-+.
T Consensus 393 SAI~~ 397 (437)
T PRK12290 393 RAITL 397 (437)
T ss_pred hHhhc
Confidence 98775
No 297
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=38.07 E-value=2.1e+02 Score=24.97 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCCCCeEEEEcccCc---------------cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEE
Q 025540 144 VAAQTKAIADRVSSWSNIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRII 208 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~iIAYEPvWA---------------IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~il 208 (251)
+.++++..++.++ .+.+|+|.|.|. ++.|..+|+.++.++.+.||+. +++++
T Consensus 137 l~~~~~~~~~~~~--~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~-----------~v~~i 203 (256)
T PF01297_consen 137 LDAEIKEKLAKLP--GRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKEN-----------KVKCI 203 (256)
T ss_dssp HHHHHHHHHTTSS--GGEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHT-----------T-SEE
T ss_pred HHHHHHHHhhccc--CCeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhc-----------CCcEE
Confidence 3334444444332 267788999873 5789999999999999999863 46555
Q ss_pred Ec-cCCCcccHHHHhcCCCCCEEEEcCc---cCc-hHHHHHHHH
Q 025540 209 YG-GSVNGANCKELAAQPDVDGFLVGGA---SLK-PEFIDIIKS 247 (251)
Q Consensus 209 YG-GSV~~~n~~~l~~~~~vDG~LVG~a---sl~-~~F~~Ii~~ 247 (251)
+. =..++.-+..++...++.=+-+-.. .-. .+|.++++.
T Consensus 204 ~~e~~~~~~~~~~la~~~g~~vv~ld~l~~~~~~~~~y~~~~~~ 247 (256)
T PF01297_consen 204 FTEPQFSSKLAEALAKETGVKVVYLDPLGGGIPDGDSYLDMMEQ 247 (256)
T ss_dssp EEETTS-THHHHHHHHCCT-EEEESSTTCSTTSSTTSHHHHHHH
T ss_pred EecCCCChHHHHHHHHHcCCcEEEeCCCcCCCCCcCCHHHHHHH
Confidence 54 4556666777777777654333322 222 466666554
No 298
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=37.90 E-value=73 Score=30.07 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=31.5
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..++|+.-|+|....+.--+-..+.|.+.||++-|.
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~ 305 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY 305 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 468999999999988887777789999999998776
No 299
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=37.90 E-value=43 Score=30.89 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
.+||+++++++.++ .+..+.+---|+|+++|+.+++. .+||-+-+|.--+.
T Consensus 217 m~~e~~~~av~~l~----------~~~~~~lEaSGgIt~~ni~~yA~-tGVD~IS~galths 267 (280)
T COG0157 217 MSPEELKEAVKLLG----------LAGRALLEASGGITLENIREYAE-TGVDVISVGALTHS 267 (280)
T ss_pred CCHHHHHHHHHHhc----------cCCceEEEEeCCCCHHHHHHHhh-cCCCEEEeCccccC
Confidence 47888887777751 13467888999999999988876 79999999865544
No 300
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=37.76 E-value=2.2e+02 Score=28.29 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=28.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+||+.-|++...-...-+-..+.|++.+|++-.
T Consensus 351 ~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 351 GVPVIADGGISNSGHIVKALTLGASTVMMGSFLA 384 (505)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence 4899999999887766666678999999999744
No 301
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.50 E-value=1.9e+02 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=43.0
Q ss_pred HHHHHHHHHhccCCCCCeEEEEcccC---------------ccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEE
Q 025540 144 VAAQTKAIADRVSSWSNIVLAYEPVW---------------AIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRII 208 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~iIAYEPvW---------------AIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~il 208 (251)
+.++++..++.++...+.++.|.|.| .+..|..+|+.++.++.+.||+. +++++
T Consensus 146 l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~i 214 (276)
T cd01016 146 LDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER-----------KIKAI 214 (276)
T ss_pred HHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc-----------CCCEE
Confidence 34444444444332345778887744 45578889999999999999964 45555
Q ss_pred Ec-cCCCcccHHHHhc
Q 025540 209 YG-GSVNGANCKELAA 223 (251)
Q Consensus 209 YG-GSV~~~n~~~l~~ 223 (251)
+- =..++.-+..++.
T Consensus 215 f~e~~~~~~~~~~l~~ 230 (276)
T cd01016 215 FVESSVNQKSIEALQD 230 (276)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 55 4555555555533
No 302
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.95 E-value=1.1e+02 Score=25.51 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCchHHHHHHH
Q 025540 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 246 (251)
Q Consensus 179 ~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~~F~~Ii~ 246 (251)
.+.+.++++.+|+. | .+.+.+ |+|+|-|......+.+.++|+++-=|-.+.+.-..+++
T Consensus 77 ~~l~~~lve~lre~-----G---~~~i~v-~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 77 LTLVPGLVEALREA-----G---VEDILV-VVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHHHHHHHHHHHHh-----C---CcceEE-eecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 34555566666654 2 345554 55555555556777889999999887776543333433
No 303
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=36.85 E-value=79 Score=23.31 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=33.4
Q ss_pred cccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
.|.--+++|++.||+.|++|+- ++. -.....+.|+.++...+++.
T Consensus 51 ~~~~~~~~l~~~~v~~vi~~~i------G~~------~~~~l~~~gI~v~~~~~~~i 95 (103)
T cd00851 51 AGGKAAEFLADEGVDVVIVGGI------GPR------ALNKLRNAGIKVYKGAEGTV 95 (103)
T ss_pred CchHHHHHHHHcCCCEEEeCCC------CcC------HHHHHHHCCCEEEEcCCCCH
Confidence 3678899999999999999873 332 23445567999998776444
No 304
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.47 E-value=2.9e+02 Score=24.11 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEEEcCcc--ccHHHHHhhcCC--CceEeeecccccCCccccccccHHHHHhCCCCE
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF--VFLGLVKSSLRP--GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPW 91 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~--~~L~~~~~~~~~--~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~ 91 (251)
+.+++...++.+.+.-. .-+||-+--|. ..+..+++.+.. .+.+||=-|--.+ .++...+.|++|
T Consensus 23 ~~~~a~~~~~al~~~Gi---~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~--------~~~~a~~aGA~F 91 (213)
T PRK06552 23 SKEEALKISLAVIKGGI---KAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV--------TARLAILAGAQF 91 (213)
T ss_pred CHHHHHHHHHHHHHCCC---CEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH--------HHHHHHHcCCCE
Confidence 57888888888766322 34566555333 234444444331 4778875554322 578889999999
Q ss_pred EEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCcc
Q 025540 92 VILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAI 171 (251)
Q Consensus 92 viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAI 171 (251)
++-=|... .=++.|.++|+-.|-=+.... |+...+. ..-.+|..=|.
T Consensus 92 ivsP~~~~------------~v~~~~~~~~i~~iPG~~T~~--------------E~~~A~~----~Gad~vklFPa--- 138 (213)
T PRK06552 92 IVSPSFNR------------ETAKICNLYQIPYLPGCMTVT--------------EIVTALE----AGSEIVKLFPG--- 138 (213)
T ss_pred EECCCCCH------------HHHHHHHHcCCCEECCcCCHH--------------HHHHHHH----cCCCEEEECCc---
Confidence 99655433 345678889987665222211 2223332 11223333351
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCch----HHHHHHHH
Q 025540 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP----EFIDIIKS 247 (251)
Q Consensus 172 GtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~~----~F~~Ii~~ 247 (251)
....++++. .++.. + +++|++==|+|+++|+.+++. .++|++-+|++-.+. +|.+|-+.
T Consensus 139 ---~~~G~~~ik----~l~~~----~-----p~ip~~atGGI~~~N~~~~l~-aGa~~vavgs~l~~~~~~~~~~~i~~~ 201 (213)
T PRK06552 139 ---STLGPSFIK----AIKGP----L-----PQVNVMVTGGVNLDNVKDWFA-AGADAVGIGGELNKLASQGDFDLITEK 201 (213)
T ss_pred ---ccCCHHHHH----HHhhh----C-----CCCEEEEECCCCHHHHHHHHH-CCCcEEEEchHHhCccccCCHHHHHHH
Confidence 123455543 33332 2 358999999999999999887 789999999875542 45555443
No 305
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.36 E-value=74 Score=24.15 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=24.1
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
+++|+.||..-..+... +.+|-+++|=.-
T Consensus 80 ~~~ivvGG~~~t~~~~~----~~~d~~~~Ge~e 108 (125)
T cd02065 80 DIPVVVGGAHPTADPEE----PKVDAVVIGEGE 108 (125)
T ss_pred CCeEEEeCCcCCccccc----cccceeeeCCeE
Confidence 69999999888887765 789999998554
No 306
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=36.20 E-value=71 Score=30.09 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=32.3
Q ss_pred cHHHHHhCCCCEEEeCchhhcccccc-------ChHHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNE-------LNEFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~E-------td~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
-.++||+.|+++| |=|.+.+ +-+.+-+..++|.++||+..|+.-=+
T Consensus 29 ~~~ilk~~G~N~v------RlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYS 81 (332)
T PF07745_consen 29 LFQILKDHGVNAV------RLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYS 81 (332)
T ss_dssp HHHHHHHTT--EE------EEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SS
T ss_pred HHHHHHhcCCCeE------EEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeeccc
Confidence 4578999999999 5455544 23577789999999999999998643
No 307
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.82 E-value=51 Score=29.38 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=37.4
Q ss_pred ccC-CCCCCC-HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccC
Q 025540 170 AIG-TGKVAT-PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 170 AIG-tG~~a~-~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl 237 (251)
-.| ||..+| .+..++.++.+|+. ..+.|+-.|=+|+. +-..+..+. .||+.||++-.
T Consensus 180 rmG~TG~~~svn~~l~~L~qrvrk~---------t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSkiv 239 (268)
T KOG4175|consen 180 RMGVTGTRESVNEKLQSLLQRVRKA---------TGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKIV 239 (268)
T ss_pred eccccccHHHHHHHHHHHHHHHHHh---------cCCCceeEeeccCCHHHHHhhhhh--ccceEecHHHH
Confidence 345 455554 56678888888876 34567777777765 444444443 79999998643
No 308
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.58 E-value=2.6e+02 Score=25.69 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC-CCcccHHHHh---cCCCCCEEEEcCc
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS-VNGANCKELA---AQPDVDGFLVGGA 235 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS-V~~~n~~~l~---~~~~vDG~LVG~a 235 (251)
.|.|+-.++++..++.. +.+++|+-|-+ .+.+++.+++ ...++||+||--=
T Consensus 58 Lt~eEr~~v~~~~~~~~--------~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 58 LTWEEKQAFVATVVETV--------AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred CCHHHHHHHHHHHHHHh--------CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 46777777777666543 34588888865 5666666544 4678999998753
No 309
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=35.32 E-value=46 Score=29.67 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=27.3
Q ss_pred ceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc
Q 025540 205 TRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 205 i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+||+-=|+|.. +.+.+++. .+.||+.||++.|+
T Consensus 192 ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 192 KIIIGNNSIDDIESAKEMLK-AGADFVSVARAILK 225 (231)
T ss_pred CcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhcc
Confidence 78888788776 66667776 89999999999987
No 310
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=35.26 E-value=63 Score=27.84 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=33.6
Q ss_pred EEEeCchhhccccccChHHHHHHHHHH---------HHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 025540 91 WVILGHSERRLILNELNEFVGDKVAYA---------LSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI 161 (251)
Q Consensus 91 ~viiGHSERR~~f~Etd~~i~~Kv~~a---------l~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~ 161 (251)
.+|.||.+ |..-.+..+.+.++++.+ -..+..|+.=..+ +.-..-+....+.++. .+.+
T Consensus 4 Lii~aHP~-~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d-------~~~~~Dv~~E~e~l~~----AD~i 71 (189)
T COG2249 4 LIIYAHPN-ESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPD-------GEFPIDVKAEQEKLLW----ADVI 71 (189)
T ss_pred EEEEeCch-hhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCc-------cCCCCCHHHHHHHHHh----cceE
Confidence 57889998 443333332222222221 1345555554443 1122223334444443 4567
Q ss_pred EEEEcccCccCC
Q 025540 162 VLAYEPVWAIGT 173 (251)
Q Consensus 162 iIAYEPvWAIGt 173 (251)
++.| |+|=-|.
T Consensus 72 vlqf-PlwW~~~ 82 (189)
T COG2249 72 VLQF-PLWWYSM 82 (189)
T ss_pred EEEc-CchhccC
Confidence 7777 9986543
No 311
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=35.23 E-value=2.6e+02 Score=23.18 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHC--CCeEEEEeCCcHHHHh---cC--CcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCH
Q 025540 107 NEFVGDKVAYALSQ--GLKVIACVGETLEQRE---AG--STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATP 179 (251)
Q Consensus 107 d~~i~~Kv~~al~~--gl~pIlCiGE~~~~r~---~g--~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~ 179 (251)
.+.....++.+.+. |+++++++|....... .. ...+.+.+++...+..- .+.-+-|-+|.+-..+. ...
T Consensus 48 ~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~-~~DGidiD~E~~~~~~~---~~~ 123 (210)
T cd00598 48 EEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY-GFDGVDIDWEYPGAADN---SDR 123 (210)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc-CCCceEEeeeCCCCcCc---cHH
Confidence 34455667777766 9999999996432211 11 12233444454444422 35678899998644322 234
Q ss_pred HHHHHHHHHHHHHHH
Q 025540 180 AQAQEVHFELRKWLL 194 (251)
Q Consensus 180 e~i~~~~~~IR~~l~ 194 (251)
+.....++.+|+.+.
T Consensus 124 ~~~~~ll~~lr~~l~ 138 (210)
T cd00598 124 ENFITLLRELRSALG 138 (210)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455555556665553
No 312
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=35.13 E-value=59 Score=30.17 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=34.9
Q ss_pred HHHHHhCCCCEEEe-----CchhhccccccC-hHHHHHHHHHHHHCCCeEEEEeCC
Q 025540 81 AEMLVNLEIPWVIL-----GHSERRLILNEL-NEFVGDKVAYALSQGLKVIACVGE 130 (251)
Q Consensus 81 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIlCiGE 130 (251)
...+|++|++.|.+ -|.+++-.|.-| +..+.+=++.|.++||-+|+..|-
T Consensus 30 l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 30 LQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 46788899887765 577777667655 567889999999999999998773
No 313
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=34.99 E-value=81 Score=27.38 Aligned_cols=61 Identities=18% Similarity=0.374 Sum_probs=34.7
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhc--CCccc---cCcceEEEccCCCcccHHHHhcCCCCC
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLAN--TSPEI---AAATRIIYGGSVNGANCKELAAQPDVD 228 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~--~~~~~---~~~i~ilYGGSV~~~n~~~l~~~~~vD 228 (251)
....+.|-|.|. ..+...+.+ .|++..... ..... --.+||.|||++.+ |..+++...++|
T Consensus 48 ~~~sllv~fdp~-------~~~~~~l~~---~l~~~~~~~~~~~~~~~~r~~~IPV~Y~~~~gp-DL~~vA~~~gLs 113 (201)
T smart00796 48 GYRSLLVHFDPL-------VIDPAALLA---RLRALEALPLAEALEVPGRIIEIPVCYGGEFGP-DLEFVARHNGLS 113 (201)
T ss_pred cceEEEEEEcCC-------CCCHHHHHH---HHHHHHhcccccccCCCCcEEEEeeEeCCCCCC-CHHHHHHHhCcC
Confidence 466788999993 223333333 343333211 11111 12489999999987 555777766665
No 314
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=34.79 E-value=2.9e+02 Score=25.94 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=25.3
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
++||+--|+|...-+..-+-..+.|++++|+.
T Consensus 198 ~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~ 229 (321)
T TIGR01306 198 RKPIIADGGIRTHGDIAKSIRFGASMVMIGSL 229 (321)
T ss_pred CCeEEEECCcCcHHHHHHHHHcCCCEEeechh
Confidence 48899988888776655555569999999974
No 315
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=34.56 E-value=1.5e+02 Score=25.63 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=23.3
Q ss_pred EEEEcccCccCCCCC--CCHHHHHHHHHHHHHHHHhc
Q 025540 162 VLAYEPVWAIGTGKV--ATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 162 iIAYEPvWAIGtG~~--a~~e~i~~~~~~IR~~l~~~ 196 (251)
.||+ | +||||.- +..+-++-+.+.|++++.+.
T Consensus 130 SIAf-P--aIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 130 SIAF-P--SLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4666 7 8999876 44445577888899998763
No 316
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=34.43 E-value=2.8e+02 Score=23.30 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=71.5
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pI---lCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
.|.|.|....+|+.|+++|+|==+|...-=.-.|+....-++.|.++||..= ++-..+.. --.+|.+-
T Consensus 8 ~~q~~id~~~~k~~g~~fviiKateG~~g~~~~D~~~~~~~~~A~~aGl~~G~YHf~~~~~~~---------~a~~qA~~ 78 (191)
T cd06414 8 EWQGDIDWKKVKASGVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPVGVYFYSYAVTVA---------EAREEAEF 78 (191)
T ss_pred ccCCccCHHHHHhCCCCEEEEEEecCCCcccccCHHHHHHHHHHHHCCCceEEEEEEEeCCHH---------HHHHHHHH
Confidence 3678899999999999999998777654001268888899999999999631 22221211 11234444
Q ss_pred HHhccCC---CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC
Q 025540 151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV 213 (251)
Q Consensus 151 ~l~~i~~---~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV 213 (251)
.++.+.. .-++++-+|-.= +.+...+..+.++.+....+.+.+. | . -++||.+.=
T Consensus 79 f~~~~~~~~~~~~~~lD~E~~~--~~~~~~~~~~~~~~~~~f~~~v~~~-G----~-~~~iY~~~~ 136 (191)
T cd06414 79 VLRLIKGYKLSYPVYYDLEDET--QLGAGLSKDQRTDIANAFCETIEAA-G----Y-YPGIYANLS 136 (191)
T ss_pred HHHHhhccCCCCCeEEEeecCC--CCCCCCCHHHHHHHHHHHHHHHHHc-C----C-CeEEEecHH
Confidence 4444331 225678888631 1121245555544433333444432 2 2 578997643
No 317
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=34.08 E-value=1.1e+02 Score=32.04 Aligned_cols=67 Identities=25% Similarity=0.202 Sum_probs=50.3
Q ss_pred CeEEEEcccCccCCCCCC----CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 160 NIVLAYEPVWAIGTGKVA----TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 160 ~~iIAYEPvWAIGtG~~a----~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
-.+|..=|++.-.|-... ..+..+++.+.++. ..+||+--|+++++|+.++.. .++||+-+-++
T Consensus 129 aDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~-----------~~iPv~AiGGI~~~~~~~~~~-~Ga~giAvisa 196 (755)
T PRK09517 129 PDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQD-----------HGIASVAIGGVGLRNAAELAA-TGIDGLCVVSA 196 (755)
T ss_pred CCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCc-----------CCCCEEEECCCCHHHHHHHHH-cCCCEEEEehH
Confidence 468899999998875432 34666554444321 148999999999999988775 68999999999
Q ss_pred cCc
Q 025540 236 SLK 238 (251)
Q Consensus 236 sl~ 238 (251)
-+.
T Consensus 197 i~~ 199 (755)
T PRK09517 197 IMA 199 (755)
T ss_pred hhC
Confidence 876
No 318
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=34.08 E-value=64 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.1
Q ss_pred ceEEEccCCCcccHHHHh-c-CCCCCEEEEcCccCc-hHHHH
Q 025540 205 TRIIYGGSVNGANCKELA-A-QPDVDGFLVGGASLK-PEFID 243 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~-~-~~~vDG~LVG~asl~-~~F~~ 243 (251)
+|+.+||+++.-...+-+ . ...+|=+.+|...++ ++|.+
T Consensus 78 ~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~ 119 (221)
T TIGR00734 78 VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLR 119 (221)
T ss_pred CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHH
Confidence 579999999987655433 3 235899999999998 77643
No 319
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=33.91 E-value=60 Score=29.70 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=40.2
Q ss_pred CCCeEEEEeCCcHHHHh---cCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 120 QGLKVIACVGETLEQRE---AGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 120 ~gl~pIlCiGE~~~~r~---~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
.|+..|=|+==-.+.+- ..-..+++.+||++++..+ |+-|+=||--+++|.|+.+.+.++++
T Consensus 33 yg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~-----------~v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 33 YGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDI-----------PVDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred ccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 56666666532111100 1135789999999998854 44466678888888888777777765
No 320
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=33.85 E-value=2.6e+02 Score=22.68 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 025540 111 GDKVAYALSQGLKVIACV 128 (251)
Q Consensus 111 ~~Kv~~al~~gl~pIlCi 128 (251)
.+.++.|.+.|..-|.+.
T Consensus 68 ~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 68 VAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 344555555555555544
No 321
>PLN02417 dihydrodipicolinate synthase
Probab=33.61 E-value=3.6e+02 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=11.8
Q ss_pred CCCEEEEcCccCc-hHHHHHHHH
Q 025540 226 DVDGFLVGGASLK-PEFIDIIKS 247 (251)
Q Consensus 226 ~vDG~LVG~asl~-~~F~~Ii~~ 247 (251)
+.||+..|-+.+- +.+.++.+.
T Consensus 193 Ga~G~is~~~n~~P~~~~~l~~a 215 (280)
T PLN02417 193 GADGVISVTSNLVPGLMHKLMFA 215 (280)
T ss_pred CCCEEEecHHHhhHHHHHHHHHH
Confidence 5666665555554 345555543
No 322
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=33.24 E-value=4.3e+02 Score=25.14 Aligned_cols=134 Identities=19% Similarity=0.095 Sum_probs=77.1
Q ss_pred CceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC
Q 025540 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138 (251)
Q Consensus 59 ~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g 138 (251)
++.+-+=||+.. |.+=-+..|...|.=|++= |.+--|....-.+|+.. +.+....+++|-..++.
T Consensus 45 ~iPii~AnMdtv-----~~~~mA~~la~~g~~~~iH-----k~~~~e~~~~~v~~~~~--~~~~~~~vsvG~~~~d~--- 109 (343)
T TIGR01305 45 GVPIIAANMDTV-----GTFEMAAALSQHSIFTAIH-----KHYSVDEWKAFATNSSP--DCLQNVAVSSGSSDNDL--- 109 (343)
T ss_pred CCceEecCCCcc-----cCHHHHHHHHHCCCeEEEe-----eCCCHHHHHHHHHhhcc--cccceEEEEeccCHHHH---
Confidence 566777888743 3445688899999999983 33322221111122222 44666777999876654
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccH
Q 025540 139 STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANC 218 (251)
Q Consensus 139 ~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~ 218 (251)
+.++.+++.-...+-++| - +--| -.+.+-++++.||+. + ++..|+-|-=++++.+
T Consensus 110 -------er~~~L~~a~~~~d~ivi-D-----~AhG---hs~~~i~~ik~ir~~----~-----p~~~viaGNV~T~e~a 164 (343)
T TIGR01305 110 -------EKMTSILEAVPQLKFICL-D-----VANG---YSEHFVEFVKLVREA----F-----PEHTIMAGNVVTGEMV 164 (343)
T ss_pred -------HHHHHHHhcCCCCCEEEE-E-----CCCC---cHHHHHHHHHHHHhh----C-----CCCeEEEecccCHHHH
Confidence 244455542111112222 1 1112 245555666677754 2 3456666668888888
Q ss_pred HHHhcCCCCCEEEEc
Q 025540 219 KELAAQPDVDGFLVG 233 (251)
Q Consensus 219 ~~l~~~~~vDG~LVG 233 (251)
.+++. .++||+.||
T Consensus 165 ~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 165 EELIL-SGADIVKVG 178 (343)
T ss_pred HHHHH-cCCCEEEEc
Confidence 77665 899999998
No 323
>PLN02411 12-oxophytodienoate reductase
Probab=33.20 E-value=51 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred ceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHH
Q 025540 205 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 245 (251)
Q Consensus 205 i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii 245 (251)
+||+-.|+++++.+.+++..-.+|-+.+|++.+- |+|..=+
T Consensus 314 ~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 314 GTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred CCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 6899999999999999998888999999999986 8875543
No 324
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=33.11 E-value=63 Score=27.48 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=38.9
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p 124 (251)
.|-|.|... +|..|+++|+|-=+|...+ .|.....-++.|.++||..
T Consensus 8 ~~qg~i~~~-~~~~g~~fviiKateG~~~---~d~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 8 SYQGTDLTA-YGQAGAKFAIVKISEGTNY---VNPKASAQVSSAIANGKMT 54 (196)
T ss_pred hcCCcccHH-HHhCCCcEEEEEEcCCCcc---CCccHHHHHHHHHHCCCee
Confidence 467788776 9999999999998888754 4567788999999999963
No 325
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.07 E-value=3.8e+02 Score=24.36 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=92.0
Q ss_pred cccCCCHHHHHHHHHHh-hccCCCCCCceeEEEcC-cc---ccHHHHHhhcC-C----CceEeeecccccCCcccccccc
Q 025540 11 WKCNGTPEEVKKIVSVL-NEGQVPSSDVVEVVVSP-PF---VFLGLVKSSLR-P----GFHVAAQNCWVKKGGAFTGEIS 80 (251)
Q Consensus 11 wKmn~~~~~~~~~~~~l-~~~~~~~~~~~~v~i~P-p~---~~L~~~~~~~~-~----~i~vgAQn~~~~~~Ga~TGeiS 80 (251)
.+...+.++-.++++.| ...-. +.+|+..++ +. -.++++.+... . ++.+.+ +.+ .+-.
T Consensus 12 ~~~~~s~e~K~~i~~~L~~~~Gv---~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a----~~~-----~~~~ 79 (280)
T cd07945 12 SGVSFSPSEKLNIAKILLQELKV---DRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG----FVD-----GDKS 79 (280)
T ss_pred CCCccCHHHHHHHHHHHHHHhCC---CEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE----ecC-----cHHH
Confidence 34456777778888876 44222 456776542 22 23344433211 0 122211 111 1235
Q ss_pred HHHHHhCCCCEEEeC------chhhc--cccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILG------HSERR--LILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 81 ~~mLkd~G~~~viiG------HSERR--~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
.+..++.|++.+-+. |.++. +...|.-+.+..-++.|.+.|+.+.+++-....-. -...+.+.+-++.+.
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~--r~~~~~~~~~~~~~~ 157 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM--RDSPDYVFQLVDFLS 157 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--cCCHHHHHHHHHHHH
Confidence 888899999988877 77764 44456666677778999999999888885310000 124566666666655
Q ss_pred hccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 153 ~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
+ .. ...+.|+ =|--.++|+++.+..+.+|+.
T Consensus 158 ~-~G-~~~i~l~-------DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 158 D-LP-IKRIMLP-------DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred H-cC-CCEEEec-------CCCCCCCHHHHHHHHHHHHhh
Confidence 4 11 2223332 144457899999999998864
No 326
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=32.71 E-value=5e+02 Score=25.70 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=26.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
+++|+.-|++...-....+-..+.|++.+|++-.
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a 377 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLA 377 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhc
Confidence 4899998887666555555568999999999743
No 327
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.60 E-value=2.3e+02 Score=25.49 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHH----------------HHHHHHHHHCCCe---EEEEeCCcHHHHhcCCcH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFV----------------GDKVAYALSQGLK---VIACVGETLEQREAGSTM 141 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i----------------~~Kv~~al~~gl~---pIlCiGE~~~~r~~g~~~ 141 (251)
+++|.++|++.+.+||.-.-.-.-|..+.+ .+-++.|++.|.. ..+++-+..-+++.+++.
T Consensus 28 ~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~ 107 (262)
T cd07948 28 AKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSI 107 (262)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 142 DVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 142 ~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
+...+++...++...... |+....+-..--.+++.+.++.+.+.+
T Consensus 108 ~e~~~~~~~~i~~a~~~G-----~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 108 TEIIESAVEVIEFVKSKG-----IEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHHHHHHHHHHHHHCC-----CeEEEEEEeeCCCCHHHHHHHHHHHHH
No 328
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.47 E-value=4.3e+02 Score=24.89 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHHHhCCCCEEEeCchh-hccccc--------cChHHHHHHHHHHHHCCCe-----EEEEeCCcHHHHhcCCcHHHHHHH
Q 025540 82 EMLVNLEIPWVILGHSE-RRLILN--------ELNEFVGDKVAYALSQGLK-----VIACVGETLEQREAGSTMDVVAAQ 147 (251)
Q Consensus 82 ~mLkd~G~~~viiGHSE-RR~~f~--------Etd~~i~~Kv~~al~~gl~-----pIlCiGE~~~~r~~g~~~~~~~~Q 147 (251)
..||++|++.+-+|--- .|.+|. -+-+..-+-+++|.++|+. .|+=+||+.+++- .+...
T Consensus 167 ~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~------~~a~~ 240 (371)
T PRK09240 167 AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDAL------MTALH 240 (371)
T ss_pred HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHH------HHHHH
Confidence 67999999988877422 232222 2456777789999999986 2445677665541 11111
Q ss_pred HHHHHhccCCCC-Ce-EEEEcccCc-cCCCCCCCHHHHHHHHHHHHHHH
Q 025540 148 TKAIADRVSSWS-NI-VLAYEPVWA-IGTGKVATPAQAQEVHFELRKWL 193 (251)
Q Consensus 148 l~~~l~~i~~~~-~~-iIAYEPvWA-IGtG~~a~~e~i~~~~~~IR~~l 193 (251)
|+.+-......+ .+ +.-+-|+=- ...-.+.+++++-+++...|-.+
T Consensus 241 l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~l 289 (371)
T PRK09240 241 LRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFL 289 (371)
T ss_pred HHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 121111111100 11 224666511 12234468999999999999765
No 329
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=32.21 E-value=62 Score=31.70 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC-CCEEEEcCccC
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD-VDGFLVGGASL 237 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~-vDG~LVG~asl 237 (251)
.+.-+.......+|+.+.+.. -+.++|+++|+++.+-+.+|..+.. +|++-||+.-+
T Consensus 254 ~DSGD~~~l~~~vr~~ld~~G----~~~vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~ 311 (443)
T TIGR01513 254 IDSGDLLYLSKQARKQLDAAG----LTQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLV 311 (443)
T ss_pred cCCCCHHHHHHHHHHHHHHcC----CCCcEEEEeCCCCHHHHHHHHHCCCceeEEecCccee
Confidence 333344566667777776653 2469999999999999999876322 89999998755
No 330
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=32.19 E-value=40 Score=32.82 Aligned_cols=26 Identities=31% Similarity=0.114 Sum_probs=23.2
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHHH
Q 025540 169 WAIGTGKVATPAQAQEVHFELRKWLL 194 (251)
Q Consensus 169 WAIGtG~~a~~e~i~~~~~~IR~~l~ 194 (251)
-|||||.-++++++..+++.+++...
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evtg 256 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVTG 256 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHhC
Confidence 49999999999999999999988754
No 331
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=32.14 E-value=4.3e+02 Score=24.78 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHhCCCCEEEeCc----hhhccccc--cChHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGH----SERRLILN--ELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 81 ~~mLkd~G~~~viiGH----SERR~~f~--Etd~~i~~Kv~~al~~gl~pIlC---iGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
.+.|+++|++.+-+|= .+.++.++ -+.+.+.+.+..+.+.|+..|-+ .|= .|+|.+.+.+-++.+
T Consensus 106 l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl------Pgqt~~~~~~~l~~~ 179 (370)
T PRK06294 106 IRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGL------PTQSLSDFIVDLHQA 179 (370)
T ss_pred HHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC------CCCCHHHHHHHHHHH
Confidence 5778899999999983 33333333 36677888999999999975433 443 255667777777776
Q ss_pred Hhcc-CCCCCeEEEEccc------CccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 152 ADRV-SSWSNIVLAYEPV------WAIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 152 l~~i-~~~~~~iIAYEPv------WAIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
++-- +..+-..+..||- ...|.-..++.+...++.+.+++.+.+.
T Consensus 180 ~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 231 (370)
T PRK06294 180 ITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQ 231 (370)
T ss_pred HccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 6511 1111122445552 1123223467777788999999988764
No 332
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.98 E-value=44 Score=34.71 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=33.1
Q ss_pred cceEEEccCC-CcccHHHHhcCCCCCEEEEcCccCc-hHH
Q 025540 204 ATRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEF 241 (251)
Q Consensus 204 ~i~ilYGGSV-~~~n~~~l~~~~~vDG~LVG~asl~-~~F 241 (251)
++||+.-|++ +++.+.+++....+|.+.+|++.+. |+|
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 4789999998 5677999999999999999999997 766
No 333
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=31.88 E-value=2.2e+02 Score=26.29 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred ceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccc
Q 025540 37 VVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLI 102 (251)
Q Consensus 37 ~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~ 102 (251)
+.|.++.|-...+..+..... -+..+-+ |+. .+.-|+.+|.+.|+++|++.|+.|++=-|..
T Consensus 179 GAD~ifi~~~~~~~~i~~~~~~~~~Pl~~-n~~---~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa 241 (292)
T PRK11320 179 GADMIFPEAMTELEMYRRFADAVKVPILA-NIT---EFGATPLFTTEELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred CCCEEEecCCCCHHHHHHHHHhcCCCEEE-Eec---cCCCCCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 457777776666776655443 1222211 322 2345888999999999999999998865543
No 334
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=31.61 E-value=3.8e+02 Score=25.56 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=63.5
Q ss_pred cHHHHHhCCCCEEEe----CchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 025540 80 SAEMLVNLEIPWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (251)
Q Consensus 80 S~~mLkd~G~~~vii----GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i 155 (251)
-++.|.+.|++++.| ||||+=. +. -++++... +=.||+ .|.-- |.+....-++...+
T Consensus 112 r~~~L~~agvD~ivID~a~g~s~~~~---~~----ik~ik~~~--~~~~vi-aGNV~-------T~e~a~~L~~aGad-- 172 (352)
T PF00478_consen 112 RAEALVEAGVDVIVIDSAHGHSEHVI---DM----IKKIKKKF--PDVPVI-AGNVV-------TYEGAKDLIDAGAD-- 172 (352)
T ss_dssp HHHHHHHTT-SEEEEE-SSTTSHHHH---HH----HHHHHHHS--TTSEEE-EEEE--------SHHHHHHHHHTT-S--
T ss_pred HHHHHHHcCCCEEEccccCccHHHHH---HH----HHHHHHhC--CCceEE-ecccC-------CHHHHHHHHHcCCC--
Confidence 356788899999998 8998732 11 13443332 213333 67643 22222222222221
Q ss_pred CCCCCeEEEEcccCccCCCCCCCHHHH--------HHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCC
Q 025540 156 SSWSNIVLAYEPVWAIGTGKVATPAQA--------QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDV 227 (251)
Q Consensus 156 ~~~~~~iIAYEPvWAIGtG~~a~~e~i--------~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~v 227 (251)
-+-+ =||.|...|.-.+ ..+.+. .+.. ..| .+||+--|+++..-+.-.+--.+.
T Consensus 173 ----~vkV------GiGpGsiCtTr~v~GvG~PQ~tAv~~~-a~~a-~~~------~v~iIADGGi~~sGDi~KAla~GA 234 (352)
T PF00478_consen 173 ----AVKV------GIGPGSICTTREVTGVGVPQLTAVYEC-AEAA-RDY------GVPIIADGGIRTSGDIVKALAAGA 234 (352)
T ss_dssp ----EEEE------SSSSSTTBHHHHHHSBSCTHHHHHHHH-HHHH-HCT------TSEEEEESS-SSHHHHHHHHHTT-
T ss_pred ----EEEE------eccCCcccccccccccCCcHHHHHHHH-HHHh-hhc------cCceeecCCcCcccceeeeeeecc
Confidence 1222 5677777654333 322222 2222 222 499999999988776666667799
Q ss_pred CEEEEcCc
Q 025540 228 DGFLVGGA 235 (251)
Q Consensus 228 DG~LVG~a 235 (251)
|.+.+|+.
T Consensus 235 d~VMlG~l 242 (352)
T PF00478_consen 235 DAVMLGSL 242 (352)
T ss_dssp SEEEESTT
T ss_pred cceeechh
Confidence 99999983
No 335
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=31.15 E-value=65 Score=30.01 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCccccCcceEEEccCCCccc-HHHHhcCCCCCEEEEcCccCc-hHHHHHH
Q 025540 184 EVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK-PEFIDII 245 (251)
Q Consensus 184 ~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n-~~~l~~~~~vDG~LVG~asl~-~~F~~Ii 245 (251)
...+.+|+.. ++||+-.|+++... +.+++....+|.+.+|++.+- |+|..=+
T Consensus 281 ~~a~~ik~~~----------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 281 DLAEAIKKAV----------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp HHHHHHHHHH----------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHH
T ss_pred hhhhhhhhhc----------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHH
Confidence 4556777653 37888889998877 888999999999999999986 8875543
No 336
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=31.12 E-value=77 Score=27.83 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 140 ~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
..+++.+||+.+++.+ |+=+|.+|-..+++.++.+.+.+++
T Consensus 51 ~~~~~~~q~~~~~~d~-----------~~~aikiG~l~~~~~~~~i~~~~~~ 91 (254)
T TIGR00097 51 PPDFVEAQLDAVFSDI-----------PVDAAKTGMLASAEIVEAVARKLRE 91 (254)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHh
Confidence 4688999999988743 4445666666677777766666654
No 337
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=31.11 E-value=55 Score=30.69 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=31.3
Q ss_pred cHHHHHhCCCCEEEeCch-----hh---ccccccChHHHHHHHHHHHHCCCeEEEEeC
Q 025540 80 SAEMLVNLEIPWVILGHS-----ER---RLILNELNEFVGDKVAYALSQGLKVIACVG 129 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHS-----ER---R~~f~Etd~~i~~Kv~~al~~gl~pIlCiG 129 (251)
..++++++|++.|-||.. |. +--|...| +-+..|.++||.+|||+.
T Consensus 15 d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD----~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLD----RVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHH----HHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHH----HHHHHHHhccCeEEEEec
Confidence 467899999999998862 22 33355555 667888999999999997
No 338
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=30.84 E-value=62 Score=29.39 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=35.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcC--CCCCEEEEcCccC
Q 025540 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQ--PDVDGFLVGGASL 237 (251)
Q Consensus 171 IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~--~~vDG~LVG~asl 237 (251)
=||..-++.+.++++.+. .++||++-|+|+.-....-+.. .++.|+.+|+|-.
T Consensus 182 DGtl~G~dlel~~~l~~~--------------~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 182 EGLCKGIDEELVSKLGEW--------------SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred cCccccCCHHHHHHHHhh--------------CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 366666677666544332 2489999999987766654432 3688899998754
No 339
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.80 E-value=66 Score=28.10 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHhhccCCCCCCceeEEEcCccc--cHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEE
Q 025540 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFV--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWV 92 (251)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~--~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~v 92 (251)
.+.+++.+.++.+.+.-. .-+||-.--|.. .+..+++.+ ..+.+||=.|--.+ .++...+.|++|+
T Consensus 13 ~~~~~a~~ia~al~~gGi---~~iEit~~tp~a~~~I~~l~~~~-~~~~vGAGTVl~~e--------~a~~ai~aGA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGL---PAIEITLRTPAALDAIRAVAAEV-EEAIVGAGTILNAK--------QFEDAAKAGSRFI 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCC---CEEEEeCCCccHHHHHHHHHHHC-CCCEEeeEeCcCHH--------HHHHHHHcCCCEE
Confidence 467888888888776322 346665554332 223333333 45778876654322 5788899999999
Q ss_pred EeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccC
Q 025540 93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (251)
Q Consensus 93 iiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIG 172 (251)
+-=|-.+ .=++.|.++|+..+==+- |...+. ..++ ..-+ +|=.=|.-..|
T Consensus 81 vSP~~~~------------~vi~~a~~~~i~~iPG~~----------TptEi~----~A~~---~Ga~-~vK~FPa~~~G 130 (201)
T PRK06015 81 VSPGTTQ------------ELLAAANDSDVPLLPGAA----------TPSEVM----ALRE---EGYT-VLKFFPAEQAG 130 (201)
T ss_pred ECCCCCH------------HHHHHHHHcCCCEeCCCC----------CHHHHH----HHHH---CCCC-EEEECCchhhC
Confidence 8776543 456678889987664222 222222 2222 1112 23333632222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h------HHHHHH
Q 025540 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P------EFIDII 245 (251)
Q Consensus 173 tG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~------~F~~Ii 245 (251)
.|.++. .||.-+ ++++++==|+|+++|+.+++....+ +.+||..|. . +|..|-
T Consensus 131 -----G~~yik----al~~pl---------p~~~l~ptGGV~~~n~~~~l~ag~~--~~~ggs~l~~~~~~~~~~~~~i~ 190 (201)
T PRK06015 131 -----GAAFLK----ALSSPL---------AGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAPKELVAAGDWAGIT 190 (201)
T ss_pred -----CHHHHH----HHHhhC---------CCCcEEecCCCCHHHHHHHHhCCCe--EEEEchhhCCchhhhcccHHHHH
Confidence 244444 344332 4689999999999999999998777 444455552 2 566665
Q ss_pred HHH
Q 025540 246 KSA 248 (251)
Q Consensus 246 ~~~ 248 (251)
+.+
T Consensus 191 ~~a 193 (201)
T PRK06015 191 KLA 193 (201)
T ss_pred HHH
Confidence 543
No 340
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=30.71 E-value=21 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcCCccccCcceEEEccCC
Q 025540 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGSV 213 (251)
Q Consensus 182 i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV 213 (251)
.+++.+.|.+..+ ...+|||.||+-
T Consensus 42 ~~~a~~~i~~i~~-------rgk~PIlvGGTg 66 (253)
T PF01715_consen 42 QRDAREAIEDILA-------RGKIPILVGGTG 66 (253)
T ss_dssp HHHHHHHHHHHHH-------TT-EEEEEES-H
T ss_pred HHHHHHHHHHHHh-------cCCeEEEECChH
Confidence 3455555555443 357999999984
No 341
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=30.55 E-value=1.8e+02 Score=26.76 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=39.3
Q ss_pred ceeEEEcCccccHHHHHhhcC-CCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhcc
Q 025540 37 VVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRL 101 (251)
Q Consensus 37 ~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~ 101 (251)
+.|.++.|-...+..+....+ -+..+ ++.... |.-|+..|++.|+++|++.|+.|.+==|.
T Consensus 174 GAD~vfi~g~~~~e~i~~~~~~i~~Pl---~~n~~~-~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 174 GADMIFPEALTSLEEFRQFAKAVKVPL---LANMTE-FGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCE---EEEecc-CCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 557777776666776655433 12222 112222 33488899999999999999999775544
No 342
>PRK10799 metal-binding protein; Provisional
Probab=30.55 E-value=37 Score=30.19 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=28.2
Q ss_pred HHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHH
Q 025540 83 MLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 83 mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
..++.||+..|-|---- .-+..|.+.|+. ++.+|=..+|+- ..+.+.+.|+.
T Consensus 181 ~a~~~gaD~~ITGd~k~------------h~~~~A~~~gl~-li~~GH~~sE~~---~~~~la~~L~~ 232 (247)
T PRK10799 181 SAARFGVDAFITGEVSE------------QTIHSAREQGLH-FYAAGHHATERG---GIRALSEWLNE 232 (247)
T ss_pred HHHHcCCCEEEECCcch------------HHHHHHHHCCCe-EEEcCchHHHHH---HHHHHHHHHHH
Confidence 33446777777764321 124566777777 556676655542 23344444444
No 343
>PRK12616 pyridoxal kinase; Reviewed
Probab=30.30 E-value=78 Score=28.23 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 140 ~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
..+++.+|++.+++++ |+=||=+|-..+.+.++.+.+++++
T Consensus 58 ~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~ 98 (270)
T PRK12616 58 DTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKE 98 (270)
T ss_pred CHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4667888888877643 4445556667777777776666665
No 344
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=30.26 E-value=1.1e+02 Score=27.85 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=14.1
Q ss_pred ccccccHHHH---HhCCCCEEEeCchhh
Q 025540 75 FTGEISAEML---VNLEIPWVILGHSER 99 (251)
Q Consensus 75 ~TGeiS~~mL---kd~G~~~viiGHSER 99 (251)
||||-|--.+ +..|++-.+.+||.-
T Consensus 211 ~TGEmSHH~vL~~~~~g~sVilc~HSNt 238 (272)
T KOG4131|consen 211 ITGEMSHHDVLDAAANGISVILCEHSNT 238 (272)
T ss_pred EeccccHHHHHHHHHcCCeEEEecCCCc
Confidence 7777775443 234555555566543
No 345
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=30.26 E-value=1.9e+02 Score=22.76 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 179 ~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
.+++.+.+..|++.|.+.++........+.-.||+.-+.+.. ...|||=+++=...
T Consensus 2 ~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~--~~sDiD~~v~~~~~ 57 (143)
T cd05400 2 LEEAKERYREIREALKESLSELAGRVAEVFLQGSYARGTALR--GDSDIDLVVVLPDD 57 (143)
T ss_pred HhHHHHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCC--CCCceeEEEEEcCc
Confidence 367788888899998887753222356899999998887632 26799988776544
No 346
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=30.22 E-value=75 Score=30.66 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=43.9
Q ss_pred cCccCCCCC---C-CHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-----cccHHHHhcCCCCCEEEEcCccCc
Q 025540 168 VWAIGTGKV---A-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-----GANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 168 vWAIGtG~~---a-~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-----~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
+|.++++.. . ..+++++..+.+.+.|.+. .+++++.+.++ ...+.+.+...++||+++-=...-
T Consensus 3 ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~ 75 (452)
T cd00578 3 IGFVTGSQHLYGEELLEQVEEYAREVADLLNEL-------PVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFG 75 (452)
T ss_pred EEEEEecccccChhHHHHHHHHHHHHHHHHhcC-------CceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccc
Confidence 355555554 3 4566778888888877542 37899999887 334556777789999999655554
No 347
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.18 E-value=1.3e+02 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred EeeecccccCCccccccccHHHHHhCCCCEEEeCchhhcc
Q 025540 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRL 101 (251)
Q Consensus 62 vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~ 101 (251)
.|.+|+.....+.+...+|.+.+.+...+++++.++..+.
T Consensus 221 aG~~n~~~~~~~~~~~~vs~E~v~~~~pDvIi~~~~~~~~ 260 (319)
T COG0614 221 AGGKNIAADEEGPGGAQVSPEQILAADPDVIILTGSGGSD 260 (319)
T ss_pred hCCCCccccccCCCCCccCHHHHHhcCCCEEEEecCCCCc
Confidence 6888887665555558999999999999999998887754
No 348
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.04 E-value=2.3e+02 Score=24.74 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHH-HHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccc
Q 025540 108 EFVGDKVAYALSQGLKVIACVGETLE-QREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV 168 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlCiGE~~~-~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPv 168 (251)
+.+.+-+..|.+.|...|.+-|-+.- ........+.+.+.++.+.+.. ....+.|+|||.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQA-AAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEec
Confidence 44556666777777776654432110 0000011223333344333211 134577888884
No 349
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=30.03 E-value=3.3e+02 Score=22.81 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=40.0
Q ss_pred cccccccHHH----HHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeE
Q 025540 74 AFTGEISAEM----LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (251)
Q Consensus 74 a~TGeiS~~m----Lkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~p 124 (251)
.|.|.+.... +|+-|+++|+|-=+|--.+ .|...+.-++.|.++||..
T Consensus 7 ~~qg~i~~~~~~~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 7 HYQGKIDWQKVKAKVKDSPVAFVFIKATEGVDI---VDPDFPTNWEGAKEAGIIR 58 (194)
T ss_pred CcCCCCChhhhhhhhhhcCccEEEEEecCCCCc---cChHHHHHHHHHHHcCCce
Confidence 4788888887 8999999999998886433 5677889999999999964
No 350
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=30.02 E-value=44 Score=24.37 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.5
Q ss_pred ccccChHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 025540 102 ILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (251)
Q Consensus 102 ~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~ 133 (251)
.+..++..+.+|++.|...|..-++.||+...
T Consensus 33 ~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 33 ELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp EEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred EEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 34446667889999999999999999998753
No 351
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.80 E-value=4.6e+02 Score=24.59 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=65.9
Q ss_pred ccccccHHHHHhCCCCEEEeCch-hhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 75 FTGEISAEMLVNLEIPWVILGHS-ERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 75 ~TGeiS~~mLkd~G~~~viiGHS-ERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
-+-+=-+..+++.|.-+++.-|+ |.+..| ++.....++...+++|-+.++.+ .+..+++
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~~~E~~~sf----------vrk~k~~~L~v~~SvG~t~e~~~----------r~~~lv~ 104 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRFDEESRIPF----------IKDMQERGLFASISVGVKACEYE----------FVTQLAE 104 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecCCHHHHHHH----------HHhccccccEEEEEcCCCHHHHH----------HHHHHHh
Confidence 34444577789999999998743 222222 23333557888999999887642 3333333
Q ss_pred ccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 154 ~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
.- ....+|.--+ | -| -.+.+-++++.||+.. ..+.+-.|.|-+......+...++||+-||
T Consensus 105 a~--~~~d~i~~D~--a--hg---~s~~~~~~i~~i~~~~----------p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 105 EA--LTPEYITIDI--A--HG---HSNSVINMIKHIKTHL----------PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred cC--CCCCEEEEeC--c--cC---chHHHHHHHHHHHHhC----------CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 10 1111221111 0 01 1345555666666542 134444554445555556667899999998
No 352
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=29.33 E-value=3.9e+02 Score=24.19 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCc
Q 025540 109 FVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 109 ~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
-+.+-++..++.|..-|++.|.+
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~Gst 49 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGT 49 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCC
Confidence 34455666777777777777765
No 353
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.24 E-value=4e+02 Score=23.54 Aligned_cols=131 Identities=19% Similarity=0.288 Sum_probs=70.4
Q ss_pred HHHHhCCCCEEE-eCc---------hhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 82 EMLVNLEIPWVI-LGH---------SERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 82 ~mLkd~G~~~vi-iGH---------SERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
+.|.+.|++.++ .|+ .||++. .+.+..+....+..|+++|..... ...++.+.+
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l--------~~~~~~~~~~~~~vi~gv~~~~~~--------~~i~~a~~a 88 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEERKEV--------IEAVVEAVAGRVPVIAGVGANSTR--------EAIELARHA 88 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHH--------HHHHHHHhCCCCeEEEecCCccHH--------HHHHHHHHH
Confidence 455667887766 455 445433 233333334567788888875321 223333333
Q ss_pred HhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceE-EE------ccCCCcccHHHHhcC
Q 025540 152 ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRI-IY------GGSVNGANCKELAAQ 224 (251)
Q Consensus 152 l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~i-lY------GGSV~~~n~~~l~~~ 224 (251)
.+ . .-.-++..=|.|.- ++++. +.++.++.... .++|| +| |-.++++-..+|+..
T Consensus 89 ~~-~--Gad~v~v~pP~y~~-----~~~~~---~~~~~~~ia~~-------~~~pi~iYn~P~~tg~~l~~~~~~~L~~~ 150 (281)
T cd00408 89 EE-A--GADGVLVVPPYYNK-----PSQEG---IVAHFKAVADA-------SDLPVILYNIPGRTGVDLSPETIARLAEH 150 (281)
T ss_pred HH-c--CCCEEEECCCcCCC-----CCHHH---HHHHHHHHHhc-------CCCCEEEEECccccCCCCCHHHHHHHhcC
Confidence 22 1 12334444455422 45544 44444444321 23454 44 889999999999988
Q ss_pred CCCCEEEEcCccCchHHHHHHHH
Q 025540 225 PDVDGFLVGGASLKPEFIDIIKS 247 (251)
Q Consensus 225 ~~vDG~LVG~asl~~~F~~Ii~~ 247 (251)
++|-|+=-.+..+ ..+.++++.
T Consensus 151 ~~v~giK~s~~d~-~~~~~~~~~ 172 (281)
T cd00408 151 PNIVGIKDSSGDL-DRLTRLIAL 172 (281)
T ss_pred CCEEEEEeCCCCH-HHHHHHHHh
Confidence 8888886655221 455555543
No 354
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=29.14 E-value=4.1e+02 Score=23.61 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=72.0
Q ss_pred HHHHHhCCCCEEEeCch--hhc-cccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 025540 81 AEMLVNLEIPWVILGHS--ERR-LILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHS--ERR-~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~ 157 (251)
.+.|.+.|++.++++.| |-- ....|-.+ +-+.+..+....+..++++|.+.. +...++.+.+.+ .
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~-l~~~~~~~~~~~~~vi~gv~~~~~--------~~~~~~a~~a~~-~-- 94 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEA-VIEAVVEAVNGRVPVIAGTGSNNT--------AEAIELTKRAEK-A-- 94 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHH-HHHHHHHHhCCCCcEEeccCCccH--------HHHHHHHHHHHH-c--
Confidence 35667789998876544 210 00111111 222333333446778899986421 122344443332 1
Q ss_pred CCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-EEE------ccCCCcccHHHHhcCCCCCEE
Q 025540 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR-IIY------GGSVNGANCKELAAQPDVDGF 230 (251)
Q Consensus 158 ~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~-ilY------GGSV~~~n~~~l~~~~~vDG~ 230 (251)
.-+-++..=|.|. .++.++ +.++.|+.... .++| ++| |=.++++-..+|+..++|-|+
T Consensus 95 G~d~v~~~~P~~~-----~~~~~~---l~~~~~~ia~~-------~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~gi 159 (284)
T cd00950 95 GADAALVVTPYYN-----KPSQEG---LYAHFKAIAEA-------TDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGI 159 (284)
T ss_pred CCCEEEEcccccC-----CCCHHH---HHHHHHHHHhc-------CCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEE
Confidence 1233444446551 234444 44555554332 1234 344 667889999999988888888
Q ss_pred EEcCccCc-hHHHHHHHH
Q 025540 231 LVGGASLK-PEFIDIIKS 247 (251)
Q Consensus 231 LVG~asl~-~~F~~Ii~~ 247 (251)
=-.+. + ..|.++++.
T Consensus 160 K~s~~--~~~~~~~~~~~ 175 (284)
T cd00950 160 KEATG--DLDRVSELIAL 175 (284)
T ss_pred EECCC--CHHHHHHHHHh
Confidence 76543 4 456666544
No 355
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.96 E-value=1.3e+02 Score=24.46 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCC-CcccHH----HHhcCCCCCEEEEcCccC
Q 025540 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSV-NGANCK----ELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV-~~~n~~----~l~~~~~vDG~LVG~asl 237 (251)
.+.+.+.++.+.+|+. + -.+++|+-||.. -|+... +.+...++|.+|==|..+
T Consensus 62 ~~~~~~~~~~~~l~~~-----g---l~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA-----G---LKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC-----C---CCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCCH
Confidence 4677888888887763 1 124999999985 354444 558889999998776643
No 356
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=28.92 E-value=60 Score=29.99 Aligned_cols=30 Identities=33% Similarity=0.622 Sum_probs=23.9
Q ss_pred EEEEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 162 iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
+=||||.|--= -+-..|+++-++|..+|..
T Consensus 263 iGaYePrWfmK-~~HInPeEav~Ihkdv~ar 292 (343)
T KOG3798|consen 263 IGAYEPRWFMK-SQHINPEEAVEIHKDVRAK 292 (343)
T ss_pred ccccCchhhcc-cccCCHHHHHHHHHHHhhh
Confidence 35999999763 3446899999999999864
No 357
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.57 E-value=51 Score=23.85 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 109 FVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 109 ~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
-+.++++.|.+.|..-++.||+.+
T Consensus 42 ~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 42 RPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred CcccchhHHHhcCCCEEEEECCch
Confidence 456899999999999999999875
No 358
>PRK07360 FO synthase subunit 2; Reviewed
Probab=28.57 E-value=4.5e+02 Score=24.77 Aligned_cols=56 Identities=21% Similarity=0.035 Sum_probs=38.7
Q ss_pred cHHHHHhCCCCEEEeCchhh-----c-cccc--cChHHHHHHHHHHHHCCCeE----EEEeCCcHHHH
Q 025540 80 SAEMLVNLEIPWVILGHSER-----R-LILN--ELNEFVGDKVAYALSQGLKV----IACVGETLEQR 135 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSER-----R-~~f~--Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r 135 (251)
....|||+|++...-+..|. | .++. .+-+.--+-++.|.+.|+.. |+=.|||.++|
T Consensus 165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edr 232 (371)
T PRK07360 165 VLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHR 232 (371)
T ss_pred HHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHH
Confidence 57899999999886444442 3 3333 24455568889999999963 44477888776
No 359
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=28.56 E-value=90 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 140 ~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
..+++.+|++.+++.+ |+=||=+|.-.+.+.++.++++|++
T Consensus 57 ~~~~i~~Ql~all~D~-----------~i~aIKiGmL~s~e~i~~v~~~l~~ 97 (321)
T PTZ00493 57 EEKFIVEQLDSIFADV-----------TIDVVKLGVLYSKKIISLVHNYITN 97 (321)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHH
Confidence 4678888888888743 3344455555555555555555544
No 360
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=28.46 E-value=91 Score=29.69 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=79.6
Q ss_pred eEEEcCcccc-HHHHHhh-----c-C---CCceEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhccccccChH
Q 025540 39 EVVVSPPFVF-LGLVKSS-----L-R---PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNE 108 (251)
Q Consensus 39 ~v~i~Pp~~~-L~~~~~~-----~-~---~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~ 108 (251)
||++.|.+.. +..-.+. + . -++.+-+=||+. -|..=-+..|...|.=+||=.+ .--|...
T Consensus 7 DVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDt-----Vte~~mAiama~~Gglgvih~~-----~~~e~q~ 76 (352)
T PF00478_consen 7 DVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDT-----VTESEMAIAMARLGGLGVIHRN-----MSIEEQA 76 (352)
T ss_dssp GEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTT-----TSSHHHHHHHHHTTSEEEEESS-----SCHHHHH
T ss_pred cEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccc-----cchHHHHHHHHHhcCCceecCC-----CCHHHHH
Confidence 6788888855 3222110 1 0 123344444442 3444446667788888887332 2223333
Q ss_pred HHHHHHHHHH-------HCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh-ccCCCCCeEEEEcccCccCCCCCCCHH
Q 025540 109 FVGDKVAYAL-------SQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPA 180 (251)
Q Consensus 109 ~i~~Kv~~al-------~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~-~i~~~~~~iIAYEPvWAIGtG~~a~~e 180 (251)
..-+|+++.. +..+.+-..||-..+.. +.++.+++ ++ ++++-- +-. -..+
T Consensus 77 ~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~----------er~~~L~~agv----D~ivID-----~a~---g~s~ 134 (352)
T PF00478_consen 77 EEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDF----------ERAEALVEAGV----DVIVID-----SAH---GHSE 134 (352)
T ss_dssp HHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHH----------HHHHHHHHTT-----SEEEEE------SS---TTSH
T ss_pred HHHhhhccccccccccccccceEEEEecCCHHHH----------HHHHHHHHcCC----CEEEcc-----ccC---ccHH
Confidence 3445666542 45777788888765332 12223332 21 233222 111 2345
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEc
Q 025540 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 181 ~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG 233 (251)
.+-++++.||+. | ++++|+-|.=++.+-+.+|+. .++|++.||
T Consensus 135 ~~~~~ik~ik~~----~-----~~~~viaGNV~T~e~a~~L~~-aGad~vkVG 177 (352)
T PF00478_consen 135 HVIDMIKKIKKK----F-----PDVPVIAGNVVTYEGAKDLID-AGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHHH----S-----TTSEEEEEEE-SHHHHHHHHH-TT-SEEEES
T ss_pred HHHHHHHHHHHh----C-----CCceEEecccCCHHHHHHHHH-cCCCEEEEe
Confidence 555666666654 3 368999888888888877666 789999998
No 361
>PRK06934 flavodoxin; Provisional
Probab=28.38 E-value=57 Score=28.93 Aligned_cols=121 Identities=15% Similarity=0.245 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCCcH-----------HHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCC
Q 025540 107 NEFVGDKVAYALSQGLKVIACVGETL-----------EQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGK 175 (251)
Q Consensus 107 d~~i~~Kv~~al~~gl~pIlCiGE~~-----------~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~ 175 (251)
.+.|++.+...+...|--|-...... .+++.+..+ .|......++..+.++|.| |+|. |.
T Consensus 73 Tk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P-----~L~~~~~dl~~YD~I~IG~-PIWw---g~ 143 (221)
T PRK06934 73 TQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRP-----EMREKIQNLADYDQIFIGY-PIWW---YK 143 (221)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCCH-----HHHHHHHhHHhCCEEEEEc-chhh---cc
Confidence 34577888888888877776554221 111122111 2333334444577888999 9995 44
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcc-eEEE-ccCCC---cccHHHHhcCC-C-CCEEEEcCccCc-----hHHHH
Q 025540 176 VATPAQAQEVHFELRKWLLANTSPEIAAAT-RIIY-GGSVN---GANCKELAAQP-D-VDGFLVGGASLK-----PEFID 243 (251)
Q Consensus 176 ~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i-~ilY-GGSV~---~~n~~~l~~~~-~-vDG~LVG~asl~-----~~F~~ 243 (251)
.|.+ +..+|.+. ... +..+ ++-- |||=. .+...+++... . .+|+.+-+...+ +...+
T Consensus 144 ~P~~-----V~tFLe~~--d~~----GK~I~pF~T~ggsg~g~s~~~i~~l~~~a~~v~~Gl~i~~~~~~~~~~~~~I~~ 212 (221)
T PRK06934 144 MPMV-----MYSFFEQH--DFS----GKTLIPFTTHGGSRFSDSLREIKRLQPNAQLVTQGLAISRNDVTDDDTPKEIIN 212 (221)
T ss_pred ccHH-----HHHHHHhc--CCC----CCEEEEEEecCCCCccchHHHHHHHcCCcceeccceeeecCcccccchHHHHHH
Confidence 4422 33445443 111 3333 2222 33322 22333444444 2 388888665442 24555
Q ss_pred HHHH
Q 025540 244 IIKS 247 (251)
Q Consensus 244 Ii~~ 247 (251)
.++.
T Consensus 213 Wl~~ 216 (221)
T PRK06934 213 WLNT 216 (221)
T ss_pred HHHH
Confidence 5554
No 362
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.33 E-value=3.5e+02 Score=24.73 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhc--CCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHH
Q 025540 106 LNEFVGDKVAYALSQGLKVIACVGETLEQREA--GSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183 (251)
Q Consensus 106 td~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~--g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~ 183 (251)
+.+.+.+.++.+.+.|+++++.||--...... ....+...+.|...+..- .+.-+-|-+|..-.- .-++++.+
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~-g~DGiDiD~E~~~~~----~~~~~~~~ 132 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEY-GFDGLDIDLESGSNP----LNATPVIT 132 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCeEEEecccCCcc----CCcHHHHH
Confidence 45567788889999999999999864321111 112233444444444322 255677889975221 12255666
Q ss_pred HHHHHHHHH
Q 025540 184 EVHFELRKW 192 (251)
Q Consensus 184 ~~~~~IR~~ 192 (251)
....++|+.
T Consensus 133 ~~~~~lk~l 141 (312)
T cd02871 133 NLISALKQL 141 (312)
T ss_pred HHHHHHHHH
Confidence 677776653
No 363
>PTZ00413 lipoate synthase; Provisional
Probab=28.31 E-value=4.7e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=11.4
Q ss_pred cccChHHHHHHHHHHHHCCCe
Q 025540 103 LNELNEFVGDKVAYALSQGLK 123 (251)
Q Consensus 103 f~Etd~~i~~Kv~~al~~gl~ 123 (251)
+|||++++.+-+..+.+.|..
T Consensus 305 LGET~eEvie~m~dLrelGVD 325 (398)
T PTZ00413 305 LGETEEEVRQTLRDLRTAGVS 325 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 455555555555555555555
No 364
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.24 E-value=4.4e+02 Score=23.62 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred HHHHhCCCCEEE-eCch---------hhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 025540 82 EMLVNLEIPWVI-LGHS---------ERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI 151 (251)
Q Consensus 82 ~mLkd~G~~~vi-iGHS---------ERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~ 151 (251)
+.|.+.|++.++ .|++ ||++. .+.+..+.+..+..+++||.... +...++.+.+
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~--------~~~~~~~~~~~~~vi~gv~~~~~--------~~~i~~a~~a 92 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEEHEEL--------IRAVVEAVNGRVPVIAGTGSNST--------AEAIELTKFA 92 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHHHHHH--------HHHHHHHhCCCCcEEeecCCchH--------HHHHHHHHHH
Confidence 455667888876 4442 44432 23334444455788889986421 1223344433
Q ss_pred HhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcce-EEE------ccCCCcccHHHHhcC
Q 025540 152 ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATR-IIY------GGSVNGANCKELAAQ 224 (251)
Q Consensus 152 l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~-ilY------GGSV~~~n~~~l~~~ 224 (251)
.+ . .-.-++..=|.|. .++. +++.++.++.... . ++| ++| |=.++++-..+|...
T Consensus 93 ~~-~--G~d~v~~~pP~~~-----~~~~---~~i~~~~~~ia~~------~-~~pv~lYn~P~~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 93 EK-A--GADGALVVTPYYN-----KPTQ---EGLYQHFKAIAEA------T-DLPIILYNVPGRTGVDILPETVARLAEH 154 (292)
T ss_pred HH-c--CCCEEEECCCcCC-----CCCH---HHHHHHHHHHHhc------C-CCCEEEEECccccCCCCCHHHHHHHHcC
Confidence 22 1 1233445556552 2344 4455555554322 1 133 334 778899999999888
Q ss_pred CCCCEEEEcCccCc-hHHHHHHH
Q 025540 225 PDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 225 ~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
++|-|+=-++. + ..|..+++
T Consensus 155 p~v~giK~s~~--d~~~~~~~~~ 175 (292)
T PRK03170 155 PNIVGIKEATG--DLERVSELIE 175 (292)
T ss_pred CCEEEEEECCC--CHHHHHHHHH
Confidence 88888776433 4 55666654
No 365
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=28.21 E-value=1.1e+02 Score=29.66 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc--CCCCCE--EEEcCccCchHHHHHHHHH
Q 025540 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA--QPDVDG--FLVGGASLKPEFIDIIKSA 248 (251)
Q Consensus 175 ~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~--~~~vDG--~LVG~asl~~~F~~Ii~~~ 248 (251)
+-.+|++..++++.+-+ +-++|++-+||=+++-..+.+. ...+.| .||++|.++..|.++...+
T Consensus 169 ~d~~~~e~a~~vk~V~~----------av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lA 236 (389)
T TIGR00381 169 DDKSPSEAAKVLEDVLQ----------AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAA 236 (389)
T ss_pred cccCHHHHHHHHHHHHH----------hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHH
Confidence 33567777766666543 3468999999866655555443 345777 8999999987777777654
No 366
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.99 E-value=32 Score=32.16 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=12.5
Q ss_pred cCcceEEEccCCCcccH
Q 025540 202 AAATRIIYGGSVNGANC 218 (251)
Q Consensus 202 ~~~i~ilYGGSV~~~n~ 218 (251)
...+|||-|||.--=|+
T Consensus 91 rgk~pIlVGGTglY~~a 107 (308)
T COG0324 91 RGKLPILVGGTGLYLKA 107 (308)
T ss_pred CCCCcEEEccHHHHHHH
Confidence 34699999999765444
No 367
>PLN02783 diacylglycerol O-acyltransferase
Probab=27.74 E-value=3.4e+02 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcC
Q 025540 177 ATPAQAQEVHFELRKWLLANT 197 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~l~~~~ 197 (251)
++.|++++.|+.+.+.+.+++
T Consensus 278 ~~~e~v~~~~~~~~~al~~L~ 298 (315)
T PLN02783 278 PSQEEVAEVLEQFVEALQDLF 298 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 578999999998888888776
No 368
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.68 E-value=1.5e+02 Score=26.83 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=46.9
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR 154 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~ 154 (251)
.+..+++|.++|.|.----.. +.+.-.+=++.+.+.|++++-=||-...+.+.-.+.+.+.+|++..|+.
T Consensus 90 l~~~k~lGf~~IEiSdGti~l----~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTIDL----PEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS-------HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCceeC----CHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHC
Confidence 467899999999885431111 2233335688899999999999998877777666778888898888873
No 369
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=27.52 E-value=57 Score=34.01 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=28.8
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC 127 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC 127 (251)
-..+.|++.|++||.+|-.||.+| +.+. .|++.. .++++++=
T Consensus 672 ~~~~Ll~kY~V~YVyVG~~ER~~Y-~~~~----~~l~~~--~~le~Vy~ 713 (723)
T TIGR03662 672 EARELLERYGVDYVYVGPLERQRY-GLST----DALEDL--GDLEPVFE 713 (723)
T ss_pred HHHHHHHHcCCeEEEECchhhhhc-cccH----Hhhccc--CCceEEEE
Confidence 346789999999999999999776 3221 343333 44667663
No 370
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=27.45 E-value=2.2e+02 Score=27.03 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=21.6
Q ss_pred HHhcCCCCCEEEEcCccCc---hHHHHHHHHH
Q 025540 220 ELAAQPDVDGFLVGGASLK---PEFIDIIKSA 248 (251)
Q Consensus 220 ~l~~~~~vDG~LVG~asl~---~~F~~Ii~~~ 248 (251)
+-+...+.||..|||.++- ++|.+++..+
T Consensus 197 ~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~ 228 (367)
T TIGR00449 197 EGLAELDFDGYAIGGVSVGEPKRDMLRILEHV 228 (367)
T ss_pred HHHhhCCCCeEEEeCcccCCCHHHHHHHHHHH
Confidence 3344458999999998774 5788888764
No 371
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.26 E-value=42 Score=26.81 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=38.7
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHH
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ 147 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Q 147 (251)
++..+.|-|||+..-+|.| .-+-+..+...|.+|..|..-- ..-|-+.+....|
T Consensus 37 VelifFGpse~~la~~~~~--~l~~l~~~~s~g~~p~AC~~va---~~~gi~d~l~~~~ 90 (113)
T COG3370 37 VELIFFGPSEKLLAKNDGD--SLKMLQELRSLGIKPLACKVVA---ENLGIEDELIFLG 90 (113)
T ss_pred eEEEEECchHHHHHhcchH--HHHHHHHHHHcCCcchHHHHHH---HhcCCcHHHHHhc
Confidence 7889999999986655544 5677888999999999998732 2334454444444
No 372
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=27.12 E-value=1.2e+02 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=31.6
Q ss_pred cceEEEccCCCcc-cHHHHhcCCCCCEEEEcCccCc--h-HHHHHHHH
Q 025540 204 ATRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK--P-EFIDIIKS 247 (251)
Q Consensus 204 ~i~ilYGGSV~~~-n~~~l~~~~~vDG~LVG~asl~--~-~F~~Ii~~ 247 (251)
+++|+--|+|... .+.+++ ..+.|++.||++.+. + -|.+|++.
T Consensus 252 ~ipIig~GGI~~~~da~~~l-~aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFL-LLGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred CCcEEEECCCCCHHHHHHHH-HcCCChheEceeecccCCcHHHHHhhh
Confidence 4788887777654 555555 599999999999886 3 56776653
No 373
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.94 E-value=5.5e+02 Score=24.37 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=70.3
Q ss_pred ccccccccHHHHHhCCCCEEEeC----chhhccccc--cChHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHH
Q 025540 73 GAFTGEISAEMLVNLEIPWVILG----HSERRLILN--ELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDV 143 (251)
Q Consensus 73 Ga~TGeiS~~mLkd~G~~~viiG----HSERR~~f~--Etd~~i~~Kv~~al~~gl~pI---lCiGE~~~~r~~g~~~~~ 143 (251)
+..|-| -.+.|++.|++.+-+| +.+-++.++ -+.+.+.+.++.+.++|+..| +=.|= .|+|.+-
T Consensus 111 ~~lt~e-~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~Gl------Pgqt~e~ 183 (400)
T PRK07379 111 GTFDLE-QLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGL------PHQTLED 183 (400)
T ss_pred CcCCHH-HHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC------CCCCHHH
Confidence 334433 3567789999999988 334333332 467788899999999998743 12342 2345555
Q ss_pred HHHHHHHHHhccCCCCCe---EEEEccc------CccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 144 VAAQTKAIADRVSSWSNI---VLAYEPV------WAIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 144 ~~~Ql~~~l~~i~~~~~~---iIAYEPv------WAIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
+.+-++.+++ +. ..++ .+..||- +..|.-..++.++..++...+++.|.+.
T Consensus 184 ~~~tl~~~~~-l~-p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~ 243 (400)
T PRK07379 184 WQASLEAAIA-LN-PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQA 243 (400)
T ss_pred HHHHHHHHHc-CC-CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 6666666554 21 1121 1234542 2234444577888888999999998764
No 374
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=26.86 E-value=87 Score=29.61 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.8
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHH----HHHHCCCeEEEEeCCcHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVA----YALSQGLKVIACVGETLE 133 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~----~al~~gl~pIlCiGE~~~ 133 (251)
..+|+++|++++=+|-+.| -||.+-+.+-++ .|.++ -+.|+|=|=...
T Consensus 93 E~~Lks~GitV~RigG~nR----~ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 93 ENALKSLGITVKRIGGANR----YETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHhCCcEEEEecCcch----HHHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 4799999999999999988 456654444443 34444 788999887654
No 375
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=26.76 E-value=1.2e+02 Score=28.20 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=58.5
Q ss_pred HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe
Q 025540 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI 161 (251)
Q Consensus 82 ~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~ 161 (251)
++|++.|.+.+++.|...- .|..+.+.+-++++.++|+...+ --++ -+..++..+.+.+-.+. +..+. ..+.
T Consensus 214 ~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~v~~--qtvL-l~gvnD~~~~l~~L~~~-l~~~g-V~py 285 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVTLLN--QSVL-LRGVNDRAQILAKLSIA-LFKVG-IIPY 285 (331)
T ss_pred HHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCEEEe--ecce-ECCcCCCHHHHHHHHHH-HhhcC-eecC
Confidence 4788999999999988653 36777888999999999986332 1111 22223343333333332 22111 1122
Q ss_pred E-EEEcccCccCCCCCCCHHHHHHHHHHHHHHHH
Q 025540 162 V-LAYEPVWAIGTGKVATPAQAQEVHFELRKWLL 194 (251)
Q Consensus 162 i-IAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~ 194 (251)
+ .-+-|+.- +..-..+.++..++.+.+|+.+.
T Consensus 286 yl~~~~~~~g-~~~f~~~~~~~~~i~~~l~~~~s 318 (331)
T TIGR00238 286 YLHYLDKVQG-AKHFLVPDAEAAQIVKELARLTS 318 (331)
T ss_pred eecCcCCCCC-cccccCCHHHHHHHHHHHHhcCC
Confidence 2 22334321 11223578888888888877654
No 376
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=26.65 E-value=2e+02 Score=25.18 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=35.9
Q ss_pred CCCHHHH----HHHHHHHHHHHHhcCCcccc-CcceEEEccCCCc---ccHHHHhcCCCCCEEEEcCccCc---hHHHHH
Q 025540 176 VATPAQA----QEVHFELRKWLLANTSPEIA-AATRIIYGGSVNG---ANCKELAAQPDVDGFLVGGASLK---PEFIDI 244 (251)
Q Consensus 176 ~a~~e~i----~~~~~~IR~~l~~~~~~~~~-~~i~ilYGGSV~~---~n~~~l~~~~~vDG~LVG~asl~---~~F~~I 244 (251)
.++.+.+ +..++..++.+... ..... .-+-++-||.-.. .-+.++.. .++||+.+||.+.. +++.++
T Consensus 25 ~~~~k~~~~sv~rT~~w~~~~~~~~-~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~-~~~~g~~igGl~~~~~~~~~~~~ 102 (238)
T PF01702_consen 25 DASRKRAEKSVERTLRWLKECLEEH-EEDKKQSLFGVIQGGDDKDLRRRSAEELSE-DGFDGYAIGGLSPGEEKEERLEI 102 (238)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHH-HHHCCSEEEEEE--TT-HHHHHHHHHHHHH-SS-SEEEE-SSSSSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCcceeeeeCCCCCHHHHHHHHHHHHh-cccccccccCCcCCCCHHHHHHH
Confidence 4445555 45555565555441 00001 1234566665332 34555666 48999999997764 578888
Q ss_pred HHHH
Q 025540 245 IKSA 248 (251)
Q Consensus 245 i~~~ 248 (251)
++.+
T Consensus 103 l~~i 106 (238)
T PF01702_consen 103 LEAI 106 (238)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 377
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=26.64 E-value=70 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=30.8
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
++++|+..|+|..+.+.--+-..+.|++++|+.-|
T Consensus 307 ~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 307 DRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 35899999999999888777778999999999877
No 378
>PRK07094 biotin synthase; Provisional
Probab=26.57 E-value=4.9e+02 Score=23.59 Aligned_cols=131 Identities=17% Similarity=0.040 Sum_probs=72.8
Q ss_pred HHHHHhCCCCEEEeCc----hhhcccc--ccChHHHHHHHHHHHHCCCeE----EEEe-CCcHHHHhcCCcHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGH----SERRLIL--NELNEFVGDKVAYALSQGLKV----IACV-GETLEQREAGSTMDVVAAQTK 149 (251)
Q Consensus 81 ~~mLkd~G~~~viiGH----SERR~~f--~Etd~~i~~Kv~~al~~gl~p----IlCi-GE~~~~r~~g~~~~~~~~Ql~ 149 (251)
...|+++|++.+.+|. .+-+..+ +-+-+.+-+-++.+.++|+.+ |+-. ||+.++.. +-+.
T Consensus 132 l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~---------~~l~ 202 (323)
T PRK07094 132 YKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLA---------DDIL 202 (323)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHH---------HHHH
Confidence 6778999999998876 2323222 245667778889999999853 2222 67765542 1122
Q ss_pred HHHhccCCCCCeEEEEcccCccCCC----CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEc--cCCCcccHHHHhc
Q 025540 150 AIADRVSSWSNIVLAYEPVWAIGTG----KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYG--GSVNGANCKELAA 223 (251)
Q Consensus 150 ~~l~~i~~~~~~iIAYEPvWAIGtG----~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYG--GSV~~~n~~~l~~ 223 (251)
.+..+....--+..|-|.- ||. .++++++.-++++..|-.+.. .+++.. + +.+.++ ...++-
T Consensus 203 -~l~~l~~~~v~~~~~~P~p--gTpl~~~~~~~~~~~~~~~a~~R~~lp~-------~~i~~~-~~~~~~~~~-~~~~~l 270 (323)
T PRK07094 203 -FLKELDLDMIGIGPFIPHP--DTPLKDEKGGSLELTLKVLALLRLLLPD-------ANIPAT-TALGTLNPD-GREKGL 270 (323)
T ss_pred -HHHhCCCCeeeeeccccCC--CCCcccCCCCCHHHHHHHHHHHHHhCcC-------CCCccc-CCccccCch-hHHHHH
Confidence 1222221011122233321 332 135788888888888877632 224443 2 234443 345666
Q ss_pred CCCCCEEEE
Q 025540 224 QPDVDGFLV 232 (251)
Q Consensus 224 ~~~vDG~LV 232 (251)
..++|+++.
T Consensus 271 ~~Gan~~~~ 279 (323)
T PRK07094 271 KAGANVVMP 279 (323)
T ss_pred HcCCceecC
Confidence 778887764
No 379
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.57 E-value=6.2e+02 Score=24.80 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=95.3
Q ss_pred cccCCCHHHHHHHHHHhhccCCCCCCceeEE-----------EcC-ccccHHHHHhhcC-CCce--EeeecccccCCccc
Q 025540 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV-----------VSP-PFVFLGLVKSSLR-PGFH--VAAQNCWVKKGGAF 75 (251)
Q Consensus 11 wKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~-----------i~P-p~~~L~~~~~~~~-~~i~--vgAQn~~~~~~Ga~ 75 (251)
|+...+.++...+++.+.+.-. ..+|+. +.| |+-.+..+.+... ..+. +=+||+- ....|
T Consensus 19 ~~~~~~t~dkl~ia~~Ld~~Gv---~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~--G~~~~ 93 (448)
T PRK12331 19 IATRMTTEEMLPILEKLDNAGY---HSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLL--GYRNY 93 (448)
T ss_pred CCcccCHHHHHHHHHHHHHcCC---CEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecccccc--ccccC
Confidence 5667778888888888776322 335543 111 4455666665543 3333 3456654 33446
Q ss_pred cccccH---HHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 76 TGEISA---EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 76 TGeiS~---~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
--++-. ++..+.|++.+-|--+ .+|.+ .+..-++.|.++|+.+.+|+.=+...| -+.+.+.+..+.+.
T Consensus 94 pddvv~~~v~~A~~~Gvd~irif~~-----lnd~~-n~~~~v~~ak~~G~~v~~~i~~t~~p~---~~~~~~~~~a~~l~ 164 (448)
T PRK12331 94 ADDVVESFVQKSVENGIDIIRIFDA-----LNDVR-NLETAVKATKKAGGHAQVAISYTTSPV---HTIDYFVKLAKEMQ 164 (448)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEe-----cCcHH-HHHHHHHHHHHcCCeEEEEEEeecCCC---CCHHHHHHHHHHHH
Confidence 555544 6678899998766543 12222 255678899999999877776544322 35566655555544
Q ss_pred hccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHH
Q 025540 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (251)
Q Consensus 153 ~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l 193 (251)
+ .. ...+.|+ =|.-.++|+++.+.++.||+.+
T Consensus 165 ~-~G-ad~I~i~-------Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 165 E-MG-ADSICIK-------DMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred H-cC-CCEEEEc-------CCCCCCCHHHHHHHHHHHHHhc
Confidence 3 11 1223332 1444578999999999999763
No 380
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.44 E-value=5e+02 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=23.4
Q ss_pred EccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHHHHHH
Q 025540 209 YGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 246 (251)
Q Consensus 209 YGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~~Ii~ 246 (251)
.|-.++++-..+|+..++|-|+=-.+ + ..|.++++
T Consensus 147 tg~~l~~~~l~~L~~~pnivgiKdss---d~~~~~~~i~ 182 (309)
T cd00952 147 FKFDFPRAAWAELAQIPQVVAAKYLG---DIGALLSDLA 182 (309)
T ss_pred cCCCCCHHHHHHHhcCCCEEEEEecC---ChHHHHHHHH
Confidence 36688888888888778887775543 4 45555444
No 381
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=26.42 E-value=74 Score=28.39 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=35.6
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCcc-ccCcceEEEccCCCcccHHHHhcCC
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPE-IAAATRIIYGGSVNGANCKELAAQP 225 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~-~~~~i~ilYGGSV~~~n~~~l~~~~ 225 (251)
...++.|-|-| ...++..+.+..+.+.+........+ ---.+||.|||...|+++ +++...
T Consensus 46 ~~~sllv~~d~-------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~IeIPV~Y~~~~GpDL~-~va~~~ 107 (223)
T COG2049 46 GYRSLLVIYDP-------PRLDPQELLERLRALWEEIEALEAAGIRLIEIPVVYGGEYGPDLA-EVARHN 107 (223)
T ss_pred cceeEEEEecc-------cccCHHHHHHHHHHHHhchhhhccccCCEEEEeeEeCCCCCCCHH-HHHHHc
Confidence 46778888876 23455555554444443332221111 123589999999999998 455433
No 382
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=26.41 E-value=48 Score=29.80 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=17.7
Q ss_pred cccccc---HHHHHhCCCCEEEeCch
Q 025540 75 FTGEIS---AEMLVNLEIPWVILGHS 97 (251)
Q Consensus 75 ~TGeiS---~~mLkd~G~~~viiGHS 97 (251)
.|||+| +.-.++.|+..+..||.
T Consensus 194 iTGd~~~~~~~~a~e~gi~~i~~gH~ 219 (250)
T COG0327 194 ITGDLSHHTAHDARELGLSVIDAGHY 219 (250)
T ss_pred EECCCcHHHHHHHHHCCCeEEecCch
Confidence 688887 44567788888888887
No 383
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=26.21 E-value=83 Score=29.37 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC-CCEEEEcCccCc
Q 025540 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD-VDGFLVGGASLK 238 (251)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~-vDG~LVG~asl~ 238 (251)
-+..+....+|+.+.+.. -+.++|+++++.+.+-+.++..+.- +|++-||+.-+.
T Consensus 258 Gd~~~~~~~~r~~l~~~G----~~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~ 313 (327)
T cd01570 258 GDLAYLSKEARKMLDEAG----LTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVT 313 (327)
T ss_pred CCHHHHHHHHHHHHHHCC----CCCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccC
Confidence 333455556666666542 2458999999999999999886321 899999987554
No 384
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.11 E-value=3.3e+02 Score=25.38 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.5
Q ss_pred cceEEEccCCC-cccHHHHhcCCCCCEEEEcCccC-c-h-HHHHHHHHH
Q 025540 204 ATRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL-K-P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG~asl-~-~-~F~~Ii~~~ 248 (251)
+++|+.-|+|. ++.+.+++. .+.|++-||++.+ + + -|.+|.+.+
T Consensus 289 ~ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 58888666665 455666665 8999999999986 3 5 466666654
No 385
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=26.05 E-value=6e+02 Score=24.51 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=63.0
Q ss_pred cHHHHHhCCCCEEEeC----chhhcccc--ccChHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHHH
Q 025540 80 SAEMLVNLEIPWVILG----HSERRLIL--NELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 80 S~~mLkd~G~~~viiG----HSERR~~f--~Etd~~i~~Kv~~al~~gl~pI-lC--iGE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
-...|+++||+.+-+| +.+-++.+ .-+-+.+.+.++.+.+.|+..| +. +|=+ |+|.+.+.+-++.
T Consensus 153 ~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~~l~~ 226 (453)
T PRK09249 153 MLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP------KQTPESFARTLEK 226 (453)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC------CCCHHHHHHHHHH
Confidence 3457889999999999 22222111 2355667788999999999433 21 2322 3444455555555
Q ss_pred HHhccCCCCCeEEEE----cccC-----ccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 151 IADRVSSWSNIVLAY----EPVW-----AIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 151 ~l~~i~~~~~~iIAY----EPvW-----AIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
+++ +. ...+ -.| .|-+ .++....++.++..++...+.+.+.+.
T Consensus 227 ~~~-l~-~~~i-~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 278 (453)
T PRK09249 227 VLE-LR-PDRL-AVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEA 278 (453)
T ss_pred HHh-cC-CCEE-EEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHC
Confidence 443 11 1222 122 2422 233444578888889999999888754
No 386
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=26.00 E-value=4.1e+02 Score=24.27 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=47.9
Q ss_pred HHHHHhccCCCCCeEEEEcc---------------cCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC
Q 025540 148 TKAIADRVSSWSNIVLAYEP---------------VWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 148 l~~~l~~i~~~~~~iIAYEP---------------vWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS 212 (251)
....++.++. ++.+|.++| +|-+.++..+||.+++++.+.|++. +---|++=.+
T Consensus 182 ~~~~~~~~~~-~r~~vt~h~af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~----------~i~~If~e~~ 250 (303)
T COG0803 182 AKAKLSKIPA-QRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKK----------NIKAIFVESN 250 (303)
T ss_pred HHHHHhcCCc-CcEEEeecchHHHHHhccCCccccccCcCcccCCCHHHHHHHHHHHHHc----------CCCEEEEeCC
Confidence 3344444443 566677665 4556667778999999999999964 1124677788
Q ss_pred CCcccHHHHhcCCC
Q 025540 213 VNGANCKELAAQPD 226 (251)
Q Consensus 213 V~~~n~~~l~~~~~ 226 (251)
++...+..+.+..+
T Consensus 251 ~~~~~~~~la~e~g 264 (303)
T COG0803 251 VSSKSAETLAKETG 264 (303)
T ss_pred CChHHHHHHHHHhC
Confidence 89999999998877
No 387
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.81 E-value=2.1e+02 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHhCCCCEEEeCc---hhh-cccc--ccChHHHHHHHHHHHHCCCeEEEEe-----CCcHHH
Q 025540 81 AEMLVNLEIPWVILGH---SER-RLIL--NELNEFVGDKVAYALSQGLKVIACV-----GETLEQ 134 (251)
Q Consensus 81 ~~mLkd~G~~~viiGH---SER-R~~f--~Etd~~i~~Kv~~al~~gl~pIlCi-----GE~~~~ 134 (251)
.+.|+++||+.+.+|- |++ .+.+ +-+.+.+.+.++.+.++|+.+...+ |||.++
T Consensus 290 l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~ 354 (472)
T TIGR03471 290 LKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRET 354 (472)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHH
Confidence 4567889999999995 222 2222 2356677788999999999987664 566554
No 388
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=25.75 E-value=27 Score=28.46 Aligned_cols=10 Identities=50% Similarity=1.052 Sum_probs=7.1
Q ss_pred EEeCc-hhhcc
Q 025540 92 VILGH-SERRL 101 (251)
Q Consensus 92 viiGH-SERR~ 101 (251)
+|||| ||+|.
T Consensus 45 IlVGHHSE~R~ 55 (126)
T PF12083_consen 45 ILVGHHSEKRH 55 (126)
T ss_pred eeccccchHHH
Confidence 57774 88873
No 389
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=25.58 E-value=4.4e+02 Score=22.80 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC-----CeEE
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS-----NIVL 163 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~-----~~iI 163 (251)
.+.+|+.+.-+ ..+....-++.+.+.|...++|-|-+... +..++..+.... +=-.
T Consensus 10 lDGTLl~~~~~------i~~~~~~al~~~~~~g~~v~iaTGR~~~~-------------~~~~~~~l~~~~~~I~~NGa~ 70 (264)
T COG0561 10 LDGTLLDSNKT------ISPETKEALARLREKGVKVVLATGRPLPD-------------VLSILEELGLDGPLITFNGAL 70 (264)
T ss_pred CCCCccCCCCc------cCHHHHHHHHHHHHCCCEEEEECCCChHH-------------HHHHHHHcCCCccEEEeCCeE
Confidence 34555655443 22333466668889999999999988632 223343333111 2123
Q ss_pred EEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 164 AYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 164 AYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
.|.| +=+=.-.+.+.+.++++...+++.
T Consensus 71 i~~~-~~~i~~~~l~~~~~~~i~~~~~~~ 98 (264)
T COG0561 71 IYNG-GELLFQKPLSREDVEELLELLEDF 98 (264)
T ss_pred EecC-CcEEeeecCCHHHHHHHHHHHHhc
Confidence 4555 333345567899999998888653
No 390
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=25.54 E-value=2.1e+02 Score=29.27 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=47.9
Q ss_pred HHHHHHHHhccC--CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHH
Q 025540 145 AAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKEL 221 (251)
Q Consensus 145 ~~Ql~~~l~~i~--~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l 221 (251)
.+|+++++.--. ...++++-.|-==| |--=|-|+..+..=.--..|++ -+++-+..||++. |+.+.++
T Consensus 161 IeqI~svi~IAka~P~~pIilq~egGra---GGHHSweDld~llL~tYs~lR~------~~NIvl~vGgGiGtp~~aa~Y 231 (717)
T COG4981 161 IEQIRSVIRIAKANPTFPIILQWEGGRA---GGHHSWEDLDDLLLATYSELRS------RDNIVLCVGGGIGTPDDAAPY 231 (717)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEecCcc---CCccchhhcccHHHHHHHHHhc------CCCEEEEecCCcCChhhcccc
Confidence 346666554211 35678888875222 2223555544333222233332 3578899999885 4555555
Q ss_pred hc--------CC--CCCEEEEcCccC
Q 025540 222 AA--------QP--DVDGFLVGGASL 237 (251)
Q Consensus 222 ~~--------~~--~vDG~LVG~asl 237 (251)
+. -| -+||+|||.+.+
T Consensus 232 LTGeWSt~~g~P~MP~DGiLvGtaaM 257 (717)
T COG4981 232 LTGEWSTAYGFPPMPFDGILVGTAAM 257 (717)
T ss_pred cccchhhhcCCCCCCcceeEechhHH
Confidence 43 11 379999999876
No 391
>PRK09936 hypothetical protein; Provisional
Probab=25.52 E-value=1.6e+02 Score=27.48 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=101.1
Q ss_pred CceEeeecccccCCccccccccHHHHHhCCCCEEEe-----CchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 025540 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL-----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (251)
Q Consensus 59 ~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~vii-----GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~ 133 (251)
.+.+-.||=+ .+-...+=+-..+.+++.||+.++| |-| .|+..+-.+++-+..|.+.||..+| |=..+
T Consensus 23 g~F~Qp~n~d-~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~v--GL~~D 95 (296)
T PRK09936 23 GIFYQPQNRD-SQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVV--GLYAD 95 (296)
T ss_pred cceecccccc-CCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEE--cccCC
Confidence 3445566643 2333344455667899999998887 444 7999999999999999999999986 75544
Q ss_pred H----Hh--cCCc-HHHHHHHHHHHHhccC--------CCCCeEEEEcccCccCCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 025540 134 Q----RE--AGST-MDVVAAQTKAIADRVS--------SWSNIVLAYEPVWAIGTGKV-ATPAQAQEVHFELRKWLLANT 197 (251)
Q Consensus 134 ~----r~--~g~~-~~~~~~Ql~~~l~~i~--------~~~~~iIAYEPvWAIGtG~~-a~~e~i~~~~~~IR~~l~~~~ 197 (251)
+ +. .+.+ ...+.+|+...+..-. ..+--+|-||+- ... .+++.-+.....+++.+..+-
T Consensus 96 p~y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD-----d~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 96 PEFFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD-----DLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred hHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc-----hhcccCHHHHHHHHHHHHHHHHhCC
Confidence 2 11 1112 4467777766554221 123467777762 111 345555555566666655443
Q ss_pred CccccCcceEEEccCCCcccHHHHhcC---CCC-----CEEEEcCccCc
Q 025540 198 SPEIAAATRIIYGGSVNGANCKELAAQ---PDV-----DGFLVGGASLK 238 (251)
Q Consensus 198 ~~~~~~~i~ilYGGSV~~~n~~~l~~~---~~v-----DG~LVG~asl~ 238 (251)
....--.|.+..-|-.+|++....+.+ .++ ||+-|++.+..
T Consensus 171 ~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~~~l~V~~QDGvGv~~l~~~ 219 (296)
T PRK09936 171 VSAKPVHISAFFAGNMSPDGYRQWLEQLKATGVNVWVQDGSGVDKLTAE 219 (296)
T ss_pred CCCCCeEEEeecccCCChHHHHHHHHHHhhcCCeEEEEcCCCcccCCHH
Confidence 100011356666677899888655442 233 77777765543
No 392
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=25.50 E-value=2.5e+02 Score=26.98 Aligned_cols=42 Identities=24% Similarity=0.544 Sum_probs=27.7
Q ss_pred eEEEc---cCCCccc---HHHHhcCCCCCEEEEcCccCc---hHHHHHHHHH
Q 025540 206 RIIYG---GSVNGAN---CKELAAQPDVDGFLVGGASLK---PEFIDIIKSA 248 (251)
Q Consensus 206 ~ilYG---GSV~~~n---~~~l~~~~~vDG~LVG~asl~---~~F~~Ii~~~ 248 (251)
..||| |++.++- +.+-+...+.||.-||| |+- ++|.++++.+
T Consensus 198 q~lfgiVQGG~~~dLR~~Sa~~l~~~~~~GyaIGG-~vge~~~~~~~il~~~ 248 (372)
T PRK01008 198 QSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLGKNLQEMVEVVGVT 248 (372)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CCCCCHHHHHHHHHHH
Confidence 45666 6665542 22234446899999999 774 5788887765
No 393
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=25.49 E-value=1.9e+02 Score=25.98 Aligned_cols=96 Identities=10% Similarity=0.126 Sum_probs=50.3
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEe-----CCcHHHH------hcCCcHHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV-----GETLEQR------EAGSTMDVVAAQTK 149 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCi-----GE~~~~r------~~g~~~~~~~~Ql~ 149 (251)
..++|++|++.+=..| .-++. .-+..|=+.||-++--+ |...... ......+...++++
T Consensus 42 ~~l~k~~G~N~iR~~h------~p~~~----~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (298)
T PF02836_consen 42 LELMKEMGFNAIRTHH------YPPSP----RFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELR 111 (298)
T ss_dssp HHHHHHTT-SEEEETT------S--SH----HHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHH
T ss_pred HHHHHhcCcceEEccc------ccCcH----HHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHH
Confidence 4568999999995543 23444 56778999999887433 2221000 01123445667777
Q ss_pred HHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 150 AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 150 ~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
..+..... -|-||. |.+|. .+...+.++++.+.+|+.
T Consensus 112 ~~v~~~~N-HPSIi~----W~~gN-E~~~~~~~~~l~~~~k~~ 148 (298)
T PF02836_consen 112 EMVRRDRN-HPSIIM----WSLGN-ESDYREFLKELYDLVKKL 148 (298)
T ss_dssp HHHHHHTT--TTEEE----EEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcC-cCchhe----eecCc-cCccccchhHHHHHHHhc
Confidence 76664322 244444 66773 333344455566665543
No 394
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=25.26 E-value=75 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.2
Q ss_pred ccCCCcccHHHHhcCCCCCEEEE-cCccCchHHH
Q 025540 210 GGSVNGANCKELAAQPDVDGFLV-GGASLKPEFI 242 (251)
Q Consensus 210 GGSV~~~n~~~l~~~~~vDG~LV-G~asl~~~F~ 242 (251)
.+.+....+.+.+.+.++.-+|| ||+.|-.+|.
T Consensus 120 ~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl 153 (210)
T TIGR01508 120 EGRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLF 153 (210)
T ss_pred CCCcCHHHHHHHHHHCCCCEEEEeeCHHHHHHHH
Confidence 34577777877788889999999 9988877775
No 395
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=25.23 E-value=48 Score=28.80 Aligned_cols=59 Identities=14% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCcccc----CcceEEEccCCCcccHHHHhcCCC
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIA----AATRIIYGGSVNGANCKELAAQPD 226 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~----~~i~ilYGGSV~~~n~~~l~~~~~ 226 (251)
....+.|-|.|.-. .-.++.+.|++.+.+....... -.+||.|||++.++ ..+++...+
T Consensus 48 ~~~sllV~fdp~~~----------~~~~l~~~l~~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~D-L~~vA~~~g 110 (202)
T PF02682_consen 48 AYRSLLVHFDPLRI----------DRAALRAALEELLASPQPSEKPPSRLIEIPVCYDGEFGPD-LEEVAEHNG 110 (202)
T ss_dssp ESSEEEEEESTTTS----------HHHHHHHHHHHHHCCCCSSCCCCEEEEEEEEEESTTTHTT-HHHHHHHHT
T ss_pred cccEEEEEEcCCcC----------CHHHHHHHHHHhhhhccccccCCCceEEEEEEECCCCCCC-HHHHHHHhC
Confidence 46778899988421 3345666777766652211111 35899999999884 335555433
No 396
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=25.13 E-value=46 Score=28.74 Aligned_cols=133 Identities=24% Similarity=0.192 Sum_probs=67.0
Q ss_pred HHHHhCCCCEEEeC--chh--hccccc-cChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 025540 82 EMLVNLEIPWVILG--HSE--RRLILN-ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS 156 (251)
Q Consensus 82 ~mLkd~G~~~viiG--HSE--RR~~f~-Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~ 156 (251)
++....|+++|++= |+= .++-.. +.-...-..+..+...+..+++=|...... .+.+-|+ ++..-
T Consensus 15 ~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~--------~~~~Dl~-~l~~g- 84 (221)
T PF03328_consen 15 EKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSP--------HIERDLE-ALDAG- 84 (221)
T ss_dssp HHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCH--------HHHHHHH-HHHTT-
T ss_pred HHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcc--------hhhhhhh-hcccC-
Confidence 34456888988873 221 111111 111122223333344667888877765321 2333344 44421
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEE--EccCCCcccHHHHhcCCCCCEEEEcC
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRII--YGGSVNGANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~il--YGGSV~~~n~~~l~~~~~vDG~LVG~ 234 (251)
..-+++ .+.-++++++++.+.++..-...-+ .++++.++ --=-=.-+|+.++++.++|||+++|.
T Consensus 85 -~~gI~l----------P~ves~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~ 151 (221)
T PF03328_consen 85 -ADGIVL----------PKVESAEDARQAVAALRYPPAGRRG--ANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGP 151 (221)
T ss_dssp -SSEEEE----------TT--SHHHHHHHHHHHSHTTTCTTT--HHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-H
T ss_pred -CCeeec----------cccCcHHHHHHHHHHHhhccccccc--ccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCc
Confidence 222333 4566899999998888754211100 11223222 22112237999999999999999997
Q ss_pred ccC
Q 025540 235 ASL 237 (251)
Q Consensus 235 asl 237 (251)
+-|
T Consensus 152 ~Dl 154 (221)
T PF03328_consen 152 ADL 154 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 397
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.09 E-value=3.5e+02 Score=23.03 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEE
Q 025540 174 GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 231 (251)
Q Consensus 174 G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~L 231 (251)
-.+.+.+.+.+..+.+|+. ...++++|+.||..-.. ++...-+.|+.-
T Consensus 144 ~~~~~~~~~~~~i~~l~~~-------~~~~~v~i~vGG~~~~~---~~~~~~gad~~~ 191 (197)
T TIGR02370 144 LMTTTMYGQKDINDKLKEE-------GYRDSVKFMVGGAPVTQ---DWADKIGADVYG 191 (197)
T ss_pred ccccCHHHHHHHHHHHHHc-------CCCCCCEEEEEChhcCH---HHHHHhCCcEEe
Confidence 3345677777777777764 11356899999987632 566666888753
No 398
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.89 E-value=59 Score=30.57 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCe-EEEEeCCcH
Q 025540 112 DKVAYALSQGLK-VIACVGETL 132 (251)
Q Consensus 112 ~Kv~~al~~gl~-pIlCiGE~~ 132 (251)
+-|..+.++|+. -|+|||||-
T Consensus 31 QLV~ksv~~GF~FNilCvGETg 52 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETG 52 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCC
Confidence 556667788887 799999984
No 399
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=24.87 E-value=1e+02 Score=29.43 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.2
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCcc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~as 236 (251)
++||+-|+-.+.+.+.+++. .++||+.+|+.+
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~-aGaDgV~~G~gg 219 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMR-TGAAGVIVGPGG 219 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 38898878777777777776 899999988543
No 400
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=24.85 E-value=1.8e+02 Score=30.00 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=49.7
Q ss_pred CeEEEEeCCcHHH--HhcCCcH--HHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 025540 122 LKVIACVGETLEQ--REAGSTM--DVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANT 197 (251)
Q Consensus 122 l~pIlCiGE~~~~--r~~g~~~--~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~ 197 (251)
|..++|.|.|-+| ||+|-|- ..+.+-+...+ +.... -.||+|+++. +.+++.+.+++...+
T Consensus 408 l~~~~~~g~th~earreagl~gie~y~~~~~~~~~---~~~~~--------~~ig~get~~----e~~~ral~~~~~~~~ 472 (637)
T TIGR03693 408 LPEITCSGLTHNEARREAGLTGIEMYAAEILHRLI---PEHGD--------FAIAAGETLA----EGVLRALEKCLEHKL 472 (637)
T ss_pred cCCceecccchHHHHHhhchhhHHHHHHHHHHhhc---CcccC--------ceeecchhHH----HHHHHHHHHHHHHHH
Confidence 5568999999776 7778652 22222222222 11122 2689999874 445555555544332
Q ss_pred Cc---cccCcceEEEccCCCcccHHHHh
Q 025540 198 SP---EIAAATRIIYGGSVNGANCKELA 222 (251)
Q Consensus 198 ~~---~~~~~i~ilYGGSV~~~n~~~l~ 222 (251)
-. ..-+.+..+.=+++..+.+.=++
T Consensus 473 ~~~~~~~~~~~~~~~~~~i~d~~~~fy~ 500 (637)
T TIGR03693 473 CERIKHGKEEISLVDLDDIEDKHCAFYL 500 (637)
T ss_pred HHHHhcCCCceeEEecccchhhHHHHHH
Confidence 11 12356788888999888876543
No 401
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=24.72 E-value=1.3e+02 Score=28.61 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=28.4
Q ss_pred CcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc
Q 025540 203 AATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 238 (251)
Q Consensus 203 ~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~ 238 (251)
..++|+.-|+|......--+-..+.|+++||++-|.
T Consensus 275 ~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 275 HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 358898888888777655455589999999998775
No 402
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=24.34 E-value=1.2e+02 Score=29.66 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCC-CCEEEEcCccC
Q 025540 174 GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD-VDGFLVGGASL 237 (251)
Q Consensus 174 G~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~-vDG~LVG~asl 237 (251)
|.-.+.-+.......+|+.+.+.. -+.++|+++++++.+-+.+|..+.. +|.+-||+.-+
T Consensus 253 gVRlDSGDl~~l~~~~r~~ld~~G----~~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~ 313 (443)
T PRK12484 253 GVRLDSGDLAELSKATRAILDAAG----LEQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLG 313 (443)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHCC----CCCcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCcccc
Confidence 333444444566666777776543 2569999999999999999986432 89999998754
No 403
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.13 E-value=5.2e+02 Score=23.11 Aligned_cols=129 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEE------EeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA------CVGETLEQREAGSTMDVVAAQTKAIADR 154 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIl------CiGE~~~~r~~g~~~~~~~~Ql~~~l~~ 154 (251)
+...++.|++.+++-..- ||.=+++.+..=.+...+.-=.||+ +.|-.+.- ..+..
T Consensus 86 a~~a~~~Gad~v~v~pP~---y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~---------------~~l~~ 147 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPY---YNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYP---------------ETVKR 147 (285)
T ss_pred HHHHHHcCCCEEEEcCCc---CCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCH---------------HHHHH
Q ss_pred cCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcC
Q 025540 155 VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 155 i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~ 234 (251)
+....+++ |.--+..+...+.+.++.. .++.+|+.| .+...--.-..+.||.+.|-
T Consensus 148 L~~~~~v~-----------giK~s~~d~~~~~~l~~~~---------~~~~~v~~G----~d~~~~~~~~~G~~G~i~~~ 203 (285)
T TIGR00674 148 LAEEPNIV-----------AIKEATGNLERISEIKAIA---------PDDFVVLSG----DDALTLPMMALGGKGVISVT 203 (285)
T ss_pred HHcCCCEE-----------EEEeCCCCHHHHHHHHHhc---------CCCeEEEEC----chHHHHHHHHcCCCEEEehH
Q ss_pred ccCc-hHHHHHHHHHhcC
Q 025540 235 ASLK-PEFIDIIKSAELK 251 (251)
Q Consensus 235 asl~-~~F~~Ii~~~~~~ 251 (251)
+++- +.+.+|.+.+.+.
T Consensus 204 ~~~~P~~~~~l~~a~~~g 221 (285)
T TIGR00674 204 ANVAPKLMKEMVNNALEG 221 (285)
T ss_pred HHhhHHHHHHHHHHHHcC
No 404
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=24.04 E-value=38 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.1
Q ss_pred cCcceEEEccCCCccc
Q 025540 202 AAATRIIYGGSVNGAN 217 (251)
Q Consensus 202 ~~~i~ilYGGSV~~~n 217 (251)
...+-|.|||+|..=|
T Consensus 5 ~~qLTIfY~G~V~Vfd 20 (36)
T PF06200_consen 5 TAQLTIFYGGQVCVFD 20 (36)
T ss_pred CCcEEEEECCEEEEeC
Confidence 4568899999876544
No 405
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=23.98 E-value=5.9e+02 Score=23.70 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 106 LNEFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 106 td~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
.-..+++.+....+.|...++..|.-
T Consensus 26 ~~~~~a~~i~~l~~~g~~vvi~hGnG 51 (308)
T cd04235 26 NVKIAAKALADLIKNGHEVVITHGNG 51 (308)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCc
Confidence 34556677888889999999999988
No 406
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=23.87 E-value=2.7e+02 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=22.0
Q ss_pred cHHHHhcCCCCCEEEEcCccCc---hHHHHHHHHH
Q 025540 217 NCKELAAQPDVDGFLVGGASLK---PEFIDIIKSA 248 (251)
Q Consensus 217 n~~~l~~~~~vDG~LVG~asl~---~~F~~Ii~~~ 248 (251)
-+.++ ...+.||.-|||-+.- +.+.++++.+
T Consensus 196 sa~~l-~~~~~~G~aIGGl~~ge~~~~~~~iv~~~ 229 (368)
T TIGR00430 196 SAEGL-IELDFPGYAIGGLSVGEPKEDMLRILEHT 229 (368)
T ss_pred HHHHH-HHCCCCeeEeCCccCCCCHHHHHHHHHHH
Confidence 34444 4458999999997763 4688888754
No 407
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.87 E-value=1.5e+02 Score=29.35 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 179 ~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
++.+.++++.||+. | .+++|+-|-.++.+.+.++.. .++|++-||+.
T Consensus 250 ~~~~~~~i~~i~~~----~-----~~~~vi~g~~~t~~~~~~l~~-~G~d~i~vg~g 296 (475)
T TIGR01303 250 QVKMISAIKAVRAL----D-----LGVPIVAGNVVSAEGVRDLLE-AGANIIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHHHH----C-----CCCeEEEeccCCHHHHHHHHH-hCCCEEEECCc
Confidence 46666777777753 2 358899888888888877664 89999998875
No 408
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.84 E-value=6.1e+02 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHH
Q 025540 177 ATPAQAQEVHFELRKW 192 (251)
Q Consensus 177 a~~e~i~~~~~~IR~~ 192 (251)
++|+++.+.++.+|+.
T Consensus 168 ~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 168 LDPFSTYELVRALRQA 183 (365)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4566666666665543
No 409
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=80 Score=30.16 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred ceEEEccCCCc-ccHHHHhcCCCCCEEEEcCccCc-h-HH
Q 025540 205 TRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-P-EF 241 (251)
Q Consensus 205 i~ilYGGSV~~-~n~~~l~~~~~vDG~LVG~asl~-~-~F 241 (251)
+|++-=|+|.. +.+...+...++||+++|++.|. | -|
T Consensus 204 ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 204 IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence 88999888874 45555566699999999999997 4 56
No 410
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=23.55 E-value=1.1e+02 Score=23.82 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeE-EEEcccCccCCCCCCCHHHHHHHHHHHH
Q 025540 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIV-LAYEPVWAIGTGKVATPAQAQEVHFELR 190 (251)
Q Consensus 112 ~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~i-IAYEPvWAIGtG~~a~~e~i~~~~~~IR 190 (251)
+|..+++.+.|.|++=||. .|-|..+ .+|++..|+. ..+| |- +.- -++++..++.+.|-
T Consensus 8 r~~LR~~ah~l~Pvv~IGk------~Glt~~v-i~ei~~aL~~----hELIKvk----v~~-----~~~~~~~e~~~~i~ 67 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGS------NGLTEGV-LAEIEQALEH----HELIKVK----IAT-----EDRETKTLIVEAIV 67 (97)
T ss_pred HHHHHHhcCCCCCeEEECC------CCCCHHH-HHHHHHHHHH----CCcEEEE----ecC-----CChhHHHHHHHHHH
Confidence 7888999999999999995 4666554 5677777762 2222 21 111 14556666666655
Q ss_pred HHHHhcCCccccCcceEEEccC
Q 025540 191 KWLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 191 ~~l~~~~~~~~~~~i~ilYGGS 212 (251)
+......=+. -..+-|||==+
T Consensus 68 ~~~~ae~Vq~-IG~~~vlYR~~ 88 (97)
T PRK10343 68 RETGACNVQV-IGKTLVLYRPT 88 (97)
T ss_pred HHHCCEEEee-eCcEEEEEecC
Confidence 5543222111 12355777544
No 411
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=23.53 E-value=3e+02 Score=23.35 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccCh-HHHHHHHHH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELN-EFVGDKVAY 116 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd-~~i~~Kv~~ 116 (251)
+..+.+.|++++++| |..|...| ....++++.
T Consensus 178 ~~~~~~aGad~iV~G----r~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 178 AADAIKAGADYVIVG----RSIYNAADPREAAKAINE 210 (215)
T ss_pred HHHHHHcCCCEEEEC----cccCCCCCHHHHHHHHHH
Confidence 778888999999999 67776443 333344433
No 412
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.22 E-value=6e+02 Score=23.46 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=32.1
Q ss_pred cceEE-EccCCCcccHHHHhcCCCCCEEEEcCccCc--h-HHHHHHHHH
Q 025540 204 ATRII-YGGSVNGANCKELAAQPDVDGFLVGGASLK--P-EFIDIIKSA 248 (251)
Q Consensus 204 ~i~il-YGGSV~~~n~~~l~~~~~vDG~LVG~asl~--~-~F~~Ii~~~ 248 (251)
++||+ -||=-+.+.+.+++. .+.|++-||++.+. + -+.+|++.+
T Consensus 237 ~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 237 KASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 47888 455556677777775 89999999999886 3 456666654
No 413
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.90 E-value=7.1e+02 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccC
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl 237 (251)
.+||+--|+++..-...-+-..+.|++.||++-.
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~a 289 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFA 289 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceee
Confidence 4899999999766665666668999999999743
No 414
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.90 E-value=1.6e+02 Score=23.48 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred ccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 77 GeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
|..-.++|++.|++.+-. ....++-+.|...+..+++.. ..|++.|-+-
T Consensus 19 ~~~l~~~l~~~G~~v~~~------~~v~Dd~~~i~~~l~~~~~~~-D~VittGG~g 67 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRY------GIVPDDPDAIKEALRRALDRA-DLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHHHTTEEEEEE------EEEESSHHHHHHHHHHHHHTT-SEEEEESSSS
T ss_pred HHHHHHHHHHcCCeeeEE------EEECCCHHHHHHHHHhhhccC-CEEEEcCCcC
Confidence 445577889998866643 445678889999999998888 8899999663
No 415
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=22.81 E-value=60 Score=29.55 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=34.9
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
..++++...|-+||+|=. |+-. =+.+.+..-+.++...|+.|++=|-...
T Consensus 30 ~~~E~~a~~GfD~v~iD~-EHg~---~~~~~l~~~i~a~~~~g~~~lVRvp~~~ 79 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDG-EHAP---NTIQDLYHQLQAIAPYASQPVIRPVEGS 79 (267)
T ss_pred HHHHHHHHcCCCEEEEcc-ccCC---CCHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence 457788888888888752 2211 2455666778888889999988776553
No 416
>PRK12412 pyridoxal kinase; Reviewed
Probab=22.79 E-value=1.3e+02 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 140 ~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
..+.+.+|++.+++++ |+=+|=+|-..+++.++.+.+.+++
T Consensus 56 ~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~ 96 (268)
T PRK12412 56 PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEK 96 (268)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4567777777777643 3334445555666666666666554
No 417
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.77 E-value=1.9e+02 Score=23.35 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEe--C-chh----------hccccccChHHHHHHHHHHHHCCCeEEEEeC
Q 025540 81 AEMLVNLEIPWVIL--G-HSE----------RRLILNELNEFVGDKVAYALSQGLKVIACVG 129 (251)
Q Consensus 81 ~~mLkd~G~~~vii--G-HSE----------RR~~f~Etd~~i~~Kv~~al~~gl~pIlCiG 129 (251)
.++||++|++.+++ | |.- +-..+. .+.+..-+++|-+.||.+++=+.
T Consensus 6 ~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 6 VDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEe
Confidence 46888888888888 3 321 111222 46788899999999999885333
No 418
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.68 E-value=5e+02 Score=23.56 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHHHHCCCeEE-EEe--CCcHHHHhcCCcHHHHHHHHHHHHhccCC-CCCeEEEEcccCccCCCCCCCHHHHHHHHHH
Q 025540 113 KVAYALSQGLKVI-ACV--GETLEQREAGSTMDVVAAQTKAIADRVSS-WSNIVLAYEPVWAIGTGKVATPAQAQEVHFE 188 (251)
Q Consensus 113 Kv~~al~~gl~pI-lCi--GE~~~~r~~g~~~~~~~~Ql~~~l~~i~~-~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~ 188 (251)
=+++|++.|...| +++ .+.--+++.+++.+...+++..+++.... .-.+.+..|= .|.+-..+|+++.++.+.
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d---~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED---WSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe---CCCCCcCCHHHHHHHHHH
Confidence 4777888887743 333 34444566678888887777777664432 2244455542 333324578888877777
Q ss_pred HHH
Q 025540 189 LRK 191 (251)
Q Consensus 189 IR~ 191 (251)
+.+
T Consensus 156 ~~~ 158 (280)
T cd07945 156 LSD 158 (280)
T ss_pred HHH
Confidence 665
No 419
>PRK14072 6-phosphofructokinase; Provisional
Probab=22.64 E-value=1.3e+02 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHhCCCCEEEeCchhhccc--cccChHHHHHHHHHHHHCCCeEEEEeCCcHHHH
Q 025540 84 LVNLEIPWVILGHSERRLI--LNELNEFVGDKVAYALSQGLKVIACVGETLEQR 135 (251)
Q Consensus 84 Lkd~G~~~viiGHSERR~~--f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r 135 (251)
|...| .+++|-| |... |.++.+...+-++...++++.-+++||=...-+
T Consensus 67 i~~~g--Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~ 117 (416)
T PRK14072 67 LAHTP--SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMD 117 (416)
T ss_pred HhcCC--CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHH
Confidence 44455 4489999 6665 555677777888888899999999999876443
No 420
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=22.63 E-value=2.5e+02 Score=22.65 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEE
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAY 165 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAY 165 (251)
+..||++||++ |.|.-....+.+ . .-.+|+++|=+. +........+++..++.++. +.++|-|
T Consensus 2 vGIVlVSHs~~---lA~gl~~~~~~i---~--~~~~i~~~gg~~-----d~~~gt~~~~i~~ai~~~~~-dGVlVlt 64 (124)
T PRK14484 2 VGIVIVSHSKK---IAEGVKDLIKQM---A--PDVPIIYAGGTE-----DGRIGTSFDQIQEAIEKNES-DGVLIFF 64 (124)
T ss_pred eeEEEEeCcHH---HHHHHHHHHHHh---h--CCCCEEEecCCC-----CCCccchHHHHHHHHHhcCc-CCeEEEE
Confidence 35689999965 444332222222 2 466788888653 22344556667777776655 6677766
No 421
>PRK09989 hypothetical protein; Provisional
Probab=22.49 E-value=4.7e+02 Score=22.73 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=32.2
Q ss_pred EEEecccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcC-CCceEeeecc
Q 025540 7 VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNC 67 (251)
Q Consensus 7 i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~vgAQn~ 67 (251)
..+||-|=.+.....+.++.+.+. -.+.+++.. |.-.....+.+.+. .++.+.+-+.
T Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~~~---Gfd~VEl~~-~~~~~~~~~~~~l~~~Gl~v~~~~~ 61 (258)
T PRK09989 4 FAANLSMMFTEVPFIERFAAARKA---GFDAVEFLF-PYDYSTLQIQKQLEQNHLTLALFNT 61 (258)
T ss_pred eeeehhhhhcCCCHHHHHHHHHHc---CCCEEEECC-cccCCHHHHHHHHHHcCCcEEEecc
Confidence 588999865443344445544442 235677643 33334566666665 6677766554
No 422
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.45 E-value=6.4e+02 Score=23.53 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=104.3
Q ss_pred cccCCCHHHHHHHHHHhhccCCCCCCceeEE---------------EcCccccHHHHHhhcCCCceEeeecccccCCccc
Q 025540 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV---------------VSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAF 75 (251)
Q Consensus 11 wKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~---------------i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~ 75 (251)
|....+.++..++++.|.+.-. +-+|+. ..|+.-++..+.+..+ +..+.+= ..+|-.
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv---~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~-~~~~~~l----l~pg~~ 89 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGV---PVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK-QAKIAAL----LLPGIG 89 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCC---CEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC-CCEEEEE----eccCcc
Confidence 4456778888999988876422 234542 2234445555544332 2222220 012211
Q ss_pred cccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 025540 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i 155 (251)
| .-..++..+.|++.+=|.= ..+|. +.+.+-++.|.+.|+.+.+|+=-+ ..-+.+.+.+|++.+.+ .
T Consensus 90 ~-~~dl~~a~~~gvd~iri~~-----~~~e~-~~~~~~i~~ak~~G~~v~~~l~~a-----~~~~~e~l~~~a~~~~~-~ 156 (337)
T PRK08195 90 T-VDDLKMAYDAGVRVVRVAT-----HCTEA-DVSEQHIGLARELGMDTVGFLMMS-----HMAPPEKLAEQAKLMES-Y 156 (337)
T ss_pred c-HHHHHHHHHcCCCEEEEEE-----ecchH-HHHHHHHHHHHHCCCeEEEEEEec-----cCCCHHHHHHHHHHHHh-C
Confidence 1 1236788899999875441 11222 346778899999999988776433 22367788888877654 1
Q ss_pred CCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCc----ccHHHHhc--CCCCCE
Q 025540 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNG----ANCKELAA--QPDVDG 229 (251)
Q Consensus 156 ~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~----~n~~~l~~--~~~vDG 229 (251)
. ...+.|+ =|.-.++|+++.+.++.+|+.+ .++++|=+=+.=|. .|+..-+. ..-|||
T Consensus 157 G-a~~i~i~-------DT~G~~~P~~v~~~v~~l~~~l--------~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 157 G-AQCVYVV-------DSAGALLPEDVRDRVRALRAAL--------KPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG 220 (337)
T ss_pred C-CCEEEeC-------CCCCCCCHHHHHHHHHHHHHhc--------CCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence 1 1122221 2444688999999999999764 13466655554333 34433332 234676
Q ss_pred EEEc
Q 025540 230 FLVG 233 (251)
Q Consensus 230 ~LVG 233 (251)
-|-|
T Consensus 221 Sl~G 224 (337)
T PRK08195 221 SLAG 224 (337)
T ss_pred cChh
Confidence 6654
No 423
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=22.41 E-value=2.5e+02 Score=25.64 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC-C--CCeEEEEcccCccCCCCCCC---HHHHHHHHHHHHHHH
Q 025540 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS-W--SNIVLAYEPVWAIGTGKVAT---PAQAQEVHFELRKWL 193 (251)
Q Consensus 120 ~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~-~--~~~iIAYEPvWAIGtG~~a~---~e~i~~~~~~IR~~l 193 (251)
...+.++|=|... +. | |...++..++. + .-+-.-|-+ |..-+|++.+ .+++..+.+.+|+
T Consensus 59 ~~~~lly~hGNa~-Dl--g--------q~~~~~~~l~~~ln~nv~~~DYSG-yG~S~G~psE~n~y~Di~avye~Lr~-- 124 (258)
T KOG1552|consen 59 AHPTLLYSHGNAA-DL--G--------QMVELFKELSIFLNCNVVSYDYSG-YGRSSGKPSERNLYADIKAVYEWLRN-- 124 (258)
T ss_pred cceEEEEcCCccc-ch--H--------HHHHHHHHHhhcccceEEEEeccc-ccccCCCcccccchhhHHHHHHHHHh--
Confidence 5567888888732 11 1 44344443321 1 223355655 6777888864 6777777766665
Q ss_pred HhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcC
Q 025540 194 LANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGG 234 (251)
Q Consensus 194 ~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~ 234 (251)
.+| .++--||||=|+...-..++++..-++|+.+=+
T Consensus 125 --~~g---~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~S 160 (258)
T KOG1552|consen 125 --RYG---SPERIILYGQSIGTVPTVDLASRYPLAAVVLHS 160 (258)
T ss_pred --hcC---CCceEEEEEecCCchhhhhHhhcCCcceEEEec
Confidence 454 234569999999999999999988788876544
No 424
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=22.38 E-value=63 Score=28.99 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred cccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 025540 78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (251)
Q Consensus 78 eiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~ 131 (251)
-..++++...|-+||+|= -|+-- + +.+.+..=+.++...|+.|++=|-..
T Consensus 23 p~~~e~~a~~G~D~v~iD-~EHg~-~--~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 23 PITTEVLGLAGFDWLLLD-GEHAP-N--DVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred cHHHHHHHhcCCCEEEEe-cccCC-C--CHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 356788899999999984 12211 1 44566777778888999999988665
No 425
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.33 E-value=87 Score=26.19 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=11.2
Q ss_pred CCCeEEEEcccCccC
Q 025540 158 WSNIVLAYEPVWAIG 172 (251)
Q Consensus 158 ~~~~iIAYEPvWAIG 172 (251)
.+.++|||||.-.-|
T Consensus 151 ~kAFIia~EPk~ihG 165 (179)
T COG4843 151 PKAFIIAYEPKTIHG 165 (179)
T ss_pred CCcEEEEcCCcceec
Confidence 577999999964433
No 426
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=22.31 E-value=93 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCC--EEEE
Q 025540 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVD--GFLV 232 (251)
Q Consensus 171 IGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vD--G~LV 232 (251)
=|||++-+-+.++ .+ ....|++-.|+++|+|..+++....-. |+=|
T Consensus 142 GGtG~~fdw~~~~-------~~---------~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDv 189 (610)
T PRK13803 142 GGSGKSFDWEKFY-------NY---------NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDV 189 (610)
T ss_pred CCCCCccChHHhh-------hc---------ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEc
Confidence 4799998876643 21 112579999999999999999855444 6555
No 427
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=22.20 E-value=4.4e+02 Score=25.35 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred ccccChHHHHHHHHHHHHCCCeEEEE------eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccC---
Q 025540 102 ILNELNEFVGDKVAYALSQGLKVIAC------VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG--- 172 (251)
Q Consensus 102 ~f~Etd~~i~~Kv~~al~~gl~pIlC------iGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIG--- 172 (251)
|+.-+.+.....+++|.++|.+.|+= .|..+.+...+-+.... -+...+. .+-.|.|+-+
T Consensus 129 Y~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~--~~~~~~~---------~~~~p~w~~~~~~ 197 (381)
T PRK11197 129 YVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA--AMRRYLQ---------AVTHPQWAWDVGL 197 (381)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc--hhhhHHh---------hhcCchhhhhhcc
Q ss_pred ----------CCCCCCHHHHHHHHHHHHH------------HHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEE
Q 025540 173 ----------TGKVATPAQAQEVHFELRK------------WLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGF 230 (251)
Q Consensus 173 ----------tG~~a~~e~i~~~~~~IR~------------~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~ 230 (251)
.+....++-.........+ +|++..+ .||+-.|=.+++.+ ..+...++||+
T Consensus 198 ~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~------~pvivKgV~s~~dA-~~a~~~Gvd~I 270 (381)
T PRK11197 198 NGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWD------GPMVIKGILDPEDA-RDAVRFGADGI 270 (381)
T ss_pred ccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCC------CCEEEEecCCHHHH-HHHHhCCCCEE
Q ss_pred EEcC
Q 025540 231 LVGG 234 (251)
Q Consensus 231 LVG~ 234 (251)
.|++
T Consensus 271 ~Vs~ 274 (381)
T PRK11197 271 VVSN 274 (381)
T ss_pred EECC
No 428
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=22.09 E-value=63 Score=28.87 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=71.7
Q ss_pred ccHHHHHhCCCCEEEeC--chhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 025540 79 ISAEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS 156 (251)
Q Consensus 79 iS~~mLkd~G~~~viiG--HSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~ 156 (251)
..++++...|.++|+|= |+- + +.+.+..-+.++...|..|++=|-..... .++.+|+.
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~----~--~~~~~~~~~~a~~~~g~~~~VRv~~~~~~------------~i~~~Ld~-- 83 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAP----N--DVRTILSQLQALAPYPSSPVVRPAIGDPV------------LIKQLLDI-- 83 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCC----C--CHHHHHHHHHHHHhcCCCcEEECCCCCHH------------HHHHHhCC--
Confidence 34677888888888874 553 1 45555566666667788999887554321 23344431
Q ss_pred CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccc-cCc-ce-EEEc--------------------cCC
Q 025540 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEI-AAA-TR-IIYG--------------------GSV 213 (251)
Q Consensus 157 ~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~-~~~-i~-ilYG--------------------GSV 213 (251)
...-+++ .++-|+|+++++++..|-- ..|... +.. .| .-|| ---
T Consensus 84 Ga~gIiv----------P~v~s~e~a~~~v~~~~y~---P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~ 150 (249)
T TIGR02311 84 GAQTLLV----------PMIETAEQAEAAVAATRYP---PMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETRE 150 (249)
T ss_pred CCCEEEe----------cCcCCHHHHHHHHHHcCCC---CCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHH
Confidence 0122333 3566788888887777711 111100 000 01 1111 111
Q ss_pred CcccHHHHhcCCCCCEEEEcCc
Q 025540 214 NGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 214 ~~~n~~~l~~~~~vDG~LVG~a 235 (251)
.-+|+.++++.++|||+++|.+
T Consensus 151 av~n~~eI~a~~gvd~l~~G~~ 172 (249)
T TIGR02311 151 ALDNLEEIAAVEGVDGVFIGPA 172 (249)
T ss_pred HHHHHHHHHCCCCCcEEEECHH
Confidence 2368899999999999999975
No 429
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=22.00 E-value=96 Score=28.33 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=36.1
Q ss_pred CCccccCcceEEEccCCCcccHHHHhc-CCCCCEEEEcCccCc--hHHHHHHHH
Q 025540 197 TSPEIAAATRIIYGGSVNGANCKELAA-QPDVDGFLVGGASLK--PEFIDIIKS 247 (251)
Q Consensus 197 ~~~~~~~~i~ilYGGSV~~~n~~~l~~-~~~vDG~LVG~asl~--~~F~~Ii~~ 247 (251)
+|...-.++ +++|-+|+++-+...+. ....||+||=|.||. ..|.-|..+
T Consensus 217 CgG~lKpdV-~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a 269 (305)
T KOG2683|consen 217 CGGLLKPDV-TFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHA 269 (305)
T ss_pred cCCccCCce-EEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHH
Confidence 333333444 89999999998877665 456899999999998 567555443
No 430
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=21.91 E-value=1.1e+02 Score=30.71 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=41.7
Q ss_pred ccccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 73 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 73 Ga~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
--|-|||-- .|+=...-..++--+|=- =....--+++|++.||+||+||.-.. |-..+ .+.+..|.-.++
T Consensus 79 ADFGGEVER-vl~MVDgvlLlVDA~EGp------MPQTrFVlkKAl~~gL~PIVVvNKiD--rp~Ar-p~~Vvd~vfDLf 148 (603)
T COG1217 79 ADFGGEVER-VLSMVDGVLLLVDASEGP------MPQTRFVLKKALALGLKPIVVINKID--RPDAR-PDEVVDEVFDLF 148 (603)
T ss_pred CCccchhhh-hhhhcceEEEEEEcccCC------CCchhhhHHHHHHcCCCcEEEEeCCC--CCCCC-HHHHHHHHHHHH
Confidence 346677632 223222333444444432 12333567889999999999999763 43344 444555555555
Q ss_pred hccC
Q 025540 153 DRVS 156 (251)
Q Consensus 153 ~~i~ 156 (251)
..+.
T Consensus 149 ~~L~ 152 (603)
T COG1217 149 VELG 152 (603)
T ss_pred HHhC
Confidence 5554
No 431
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.77 E-value=4.3e+02 Score=21.29 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEEEcCccccHHHHHhhcCC-CceEeeecccccCCcccccc--ccHHHHHhCCCCEE
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFHVAAQNCWVKKGGAFTGE--ISAEMLVNLEIPWV 92 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~-~i~vgAQn~~~~~~Ga~TGe--iS~~mLkd~G~~~v 92 (251)
+.+...++++.+.+ .+++-++.++ ..+..+.+.... ++.+.++=-+ ...-.+|-+ -.++..+++|++.+
T Consensus 11 d~~~~~~~~~~~~~------~gv~gi~~~g-~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 11 TLEDIAKLCDEAIE------YGFAAVCVNP-GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred CHHHHHHHHHHHHH------hCCcEEEECH-HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 35555666665544 2344444444 445555554433 4443332111 000011222 35788899999999
Q ss_pred EeCchhhccccccC--hHHHHHHHHHHHHC---CCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHH-hccCCCCCeEEEE
Q 025540 93 ILGHSERRLILNEL--NEFVGDKVAYALSQ---GLKVIA-CVGETLEQREAGSTMDVVAAQTKAIA-DRVSSWSNIVLAY 165 (251)
Q Consensus 93 iiGHSERR~~f~Et--d~~i~~Kv~~al~~---gl~pIl-CiGE~~~~r~~g~~~~~~~~Ql~~~l-~~i~~~~~~iIAY 165 (251)
++--.= ++.-+ .+.+.+-++...+. ++..++ ++-... .+.+.+.+..+.+. .++ ..|-.
T Consensus 83 ~v~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~------~~~~~~~~~~~~~~~~g~-----~~iK~ 148 (201)
T cd00945 83 DVVINI---GSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL------KTADEIAKAARIAAEAGA-----DFIKT 148 (201)
T ss_pred EEeccH---HHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC------CCHHHHHHHHHHHHHhCC-----CEEEe
Confidence 984321 11112 45555555555554 665443 221111 23334443322211 122 22333
Q ss_pred cccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCC-cccHHHHhcCCCCCEEEEc
Q 025540 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVN-GANCKELAAQPDVDGFLVG 233 (251)
Q Consensus 166 EPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~-~~n~~~l~~~~~vDG~LVG 233 (251)
-+.|. ....+.+++.++.+..+ .+++++..|+++ ++++.+.+.. +.||+.+|
T Consensus 149 ~~~~~---~~~~~~~~~~~i~~~~~------------~~~~v~~~gg~~~~~~~~~~~~~-Ga~g~~~g 201 (201)
T cd00945 149 STGFG---GGGATVEDVKLMKEAVG------------GRVGVKAAGGIKTLEDALAAIEA-GADGIGTS 201 (201)
T ss_pred CCCCC---CCCCCHHHHHHHHHhcc------------cCCcEEEECCCCCHHHHHHHHHh-ccceeecC
Confidence 33222 11235555544332221 235676666666 7777777765 88988765
No 432
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=21.74 E-value=76 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=27.3
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
..++++.++++++.||+-++...... | +.+++-|...
T Consensus 95 ~~~~~~~~~d~vi~GHtH~~~~~~~~--------------~-~~~inpGs~~ 131 (155)
T cd00841 95 LYLAKEGGADVVLYGHTHIPVIEKIG--------------G-VLLLNPGSLS 131 (155)
T ss_pred hhhhhhcCCCEEEECcccCCccEEEC--------------C-EEEEeCCCcc
Confidence 56788899999999999888654322 1 5677788754
No 433
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.59 E-value=98 Score=29.51 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=41.0
Q ss_pred eeEEEcCccccHHHHHhhcCCCceEeeecccccCCccccccccHHHHHhCCCCEEEe
Q 025540 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL 94 (251)
Q Consensus 38 ~~v~i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~vii 94 (251)
+.+.=||......+.+..+.-.+.-||-|+- .-|+|.|.||+..|.+.|+==||-
T Consensus 245 v~iAEFPtT~eAA~asr~~Gm~VlMGAPNiv--rGgSHsGNvsA~ela~~glLDiLs 299 (377)
T COG3454 245 VAIAEFPTTVEAAKASRELGMQVLMGAPNIV--RGGSHSGNVSARELAQHGLLDILS 299 (377)
T ss_pred eeEEeCccHHHHHHHHHHhCchhhcCCCcee--ccCCcccchhHHHHHhCCceeeec
Confidence 4466677666666555555446788999965 678899999999999999866653
No 434
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.50 E-value=6.5e+02 Score=23.25 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=60.8
Q ss_pred cccccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 74 a~TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
..|-|. +++|++.|.+++++=|-..- .|+.+...+-++++.++|+.... - +---|.-+++.+.+.+-.+.+..
T Consensus 190 rit~el-~~~L~~~~~~~~~~~h~dh~---~Ei~d~~~~ai~~L~~~Gi~v~~--q-tvllkgiNDn~~~l~~L~~~l~~ 262 (321)
T TIGR03821 190 RITSGL-CDLLANSRLQTVLVVHINHA---NEIDAEVADALAKLRNAGITLLN--Q-SVLLRGVNDNADTLAALSERLFD 262 (321)
T ss_pred HhhHHH-HHHHHhcCCcEEEEeeCCCh---HhCcHHHHHHHHHHHHcCCEEEe--c-ceeeCCCCCCHHHHHHHHHHHHH
Confidence 344333 35888999888864343321 24455677899999999986422 1 11122223344444433333322
Q ss_pred ccCCCCCeE-EEEcccCccCC-CCCCCHHHHHHHHHHHHHHHHh
Q 025540 154 RVSSWSNIV-LAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLA 195 (251)
Q Consensus 154 ~i~~~~~~i-IAYEPvWAIGt-G~~a~~e~i~~~~~~IR~~l~~ 195 (251)
+. ..+.+ .-+.|+- |+ ....++++..++.+.+|+.++.
T Consensus 263 -~g-v~pyyl~~~~p~g--g~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 263 -AG-VLPYYLHLLDKVQ--GAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred -cC-CeeCcccccCCCC--CcccccCCHHHHHHHHHHHHHhCCC
Confidence 21 22322 2334543 32 2346899999999999987653
No 435
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.48 E-value=4.3e+02 Score=24.80 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHhCCC--CEEEe----CchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 025540 81 AEMLVNLEI--PWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR 154 (251)
Q Consensus 81 ~~mLkd~G~--~~vii----GHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~ 154 (251)
+..|.+.|+ +.+.| ||++.=.-+ ++...+.-=.+.+.+|+.. |.+....-++...+.
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~----------I~~ir~~~p~~~vi~g~V~-------t~e~a~~l~~aGad~ 164 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHGHSDSVINM----------IQHIKKHLPETFVIAGNVG-------TPEAVRELENAGADA 164 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHH----------HHHHHhhCCCCeEEEEecC-------CHHHHHHHHHcCcCE
Q ss_pred cC---------CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCC
Q 025540 155 VS---------SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQP 225 (251)
Q Consensus 155 i~---------~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~ 225 (251)
+. ......=...|-| -...|++... ..++||+--|++...-...-+-..
T Consensus 165 i~vg~~~G~~~~t~~~~g~~~~~w---------------~l~ai~~~~~-------~~~ipVIAdGGI~~~~Di~KaLa~ 222 (326)
T PRK05458 165 TKVGIGPGKVCITKIKTGFGTGGW---------------QLAALRWCAK-------AARKPIIADGGIRTHGDIAKSIRF 222 (326)
T ss_pred EEECCCCCcccccccccCCCCCcc---------------HHHHHHHHHH-------HcCCCEEEeCCCCCHHHHHHHHHh
Q ss_pred CCCEEEEcCc
Q 025540 226 DVDGFLVGGA 235 (251)
Q Consensus 226 ~vDG~LVG~a 235 (251)
+.|++.+|++
T Consensus 223 GA~aV~vG~~ 232 (326)
T PRK05458 223 GATMVMIGSL 232 (326)
T ss_pred CCCEEEechh
No 436
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.42 E-value=7e+02 Score=23.60 Aligned_cols=158 Identities=17% Similarity=0.022 Sum_probs=87.6
Q ss_pred cccCCCHHHHHHHHHHhhccCCCCCCceeEEEcCc------cccHHHHHhhcC--CCceEeeecccccCCccccccccHH
Q 025540 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPP------FVFLGLVKSSLR--PGFHVAAQNCWVKKGGAFTGEISAE 82 (251)
Q Consensus 11 wKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp------~~~L~~~~~~~~--~~i~vgAQn~~~~~~Ga~TGeiS~~ 82 (251)
.+...+.++=.++++.|.+.-+ +.+|+..+.+ +-.-..+.+.+. ....+.+= .+. .-..+
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~GV---~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l--~~n-------~~die 128 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSSGL---PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVL--TPN-------LKGFE 128 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CEEEECCCcCcccccccccHHHHHHHHHhccCCceeEE--cCC-------HHHHH
Confidence 4555677777888888776432 4566653322 122222222221 11111100 001 12345
Q ss_pred HHHhCCCCEEEeC------chhhc--cccccChHHHHHHHHHHHHCCCeEEEEe----CCcHHHHhcCCcHHHHHHHHHH
Q 025540 83 MLVNLEIPWVILG------HSERR--LILNELNEFVGDKVAYALSQGLKVIACV----GETLEQREAGSTMDVVAAQTKA 150 (251)
Q Consensus 83 mLkd~G~~~viiG------HSERR--~~f~Etd~~i~~Kv~~al~~gl~pIlCi----GE~~~~r~~g~~~~~~~~Ql~~ 150 (251)
...+.|+++|-+. |+++. +...|.-+.+.+-++.|.++|+.+.+++ |-..+.| -..+.+.+..+.
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r---~~~~~l~~~~~~ 205 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP---VPPSKVAYVAKE 205 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC---CCHHHHHHHHHH
Confidence 6778899998776 55553 3344666667788999999999986444 3222122 245666666666
Q ss_pred HHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHH
Q 025540 151 IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (251)
Q Consensus 151 ~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~ 192 (251)
+.+. . ...+.|+= |--.++|.++.+.++.+|+.
T Consensus 206 ~~~~-G-ad~I~l~D-------T~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 206 LYDM-G-CYEISLGD-------TIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHc-C-CCEEEecC-------CcCCcCHHHHHHHHHHHHHh
Confidence 5541 1 22333321 33347899999999999875
No 437
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.26 E-value=3.7e+02 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhc-CCCCCEEEEcCccCchHHHHHHHH
Q 025540 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAA-QPDVDGFLVGGASLKPEFIDIIKS 247 (251)
Q Consensus 183 ~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~-~~~vDG~LVG~asl~~~F~~Ii~~ 247 (251)
+++.+.|++.... ....++.+|+-||..-.....+++. .++||.++ |+.. +..+.++++.
T Consensus 60 ~~~~~~i~~~~~~---k~~~p~~~vvv~Gc~a~~~~~~~~~~~p~vD~v~-g~~~-~~~~~~ll~~ 120 (448)
T PRK14333 60 QKVYSYLGRQAKR---KHKNPDLTLVVAGCVAQQEGESLLRRVPELDLVM-GPQH-ANRLEDLLEQ 120 (448)
T ss_pred HHHHHHHHHHHHH---HhcCCCCEEEEECccCccCHHHHHhcCCCCCEEE-CCCC-HHHHHHHHHH
Confidence 4566666554221 1224568899999988888888884 68999977 4433 3455555544
No 438
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.24 E-value=1.3e+02 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=24.8
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCc
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGA 235 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~a 235 (251)
+++|+-|+-.+++.+.+++. .++|++.||..
T Consensus 187 ~ipVIaG~V~t~e~A~~l~~-aGAD~V~VG~G 217 (368)
T PRK08649 187 DVPVIVGGCVTYTTALHLMR-TGAAGVLVGIG 217 (368)
T ss_pred CCCEEEeCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 38888878777777777775 99999999953
No 439
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=21.21 E-value=1.4e+02 Score=23.06 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 112 ~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
+|..+++.++|.|++=||. .|-|..+ .+|+...|+.=. +=++-| . .+ ++++.+++...|-+
T Consensus 6 r~~Lr~~ah~l~p~v~IGK------~Glt~~v-i~ei~~aL~~hE-LIKVkv------l--~~---~~~~~~e~a~~i~~ 66 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGK------NGLTEGV-IKEIEQALEHRE-LIKVKV------A--TE---DREDKTLIAEALVK 66 (95)
T ss_pred HHHHHHHhCCCCCeEEECC------CCCCHHH-HHHHHHHHHhCC-cEEEEe------c--CC---ChhHHHHHHHHHHH
Confidence 6888999999999999996 4666554 467777776211 112222 1 11 24555666666555
Q ss_pred HHHhcCCccccCcceEEEccC
Q 025540 192 WLLANTSPEIAAATRIIYGGS 212 (251)
Q Consensus 192 ~l~~~~~~~~~~~i~ilYGGS 212 (251)
......=+ .-..+-|||=.|
T Consensus 67 ~~~a~~Vq-~iG~~~vlYR~~ 86 (95)
T TIGR00253 67 ETGACNVQ-VIGKTIVLYRPT 86 (95)
T ss_pred HHCCEEEE-EEccEEEEEecC
Confidence 44322111 122456888765
No 440
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=4.8e+02 Score=22.03 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc
Q 025540 141 MDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA 216 (251)
Q Consensus 141 ~~~~~~Ql~~~l~~i~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~ 216 (251)
.......=..+++.+++...++.-=++ |+..+.|+..+..+..|.. +.++-++-|||=.-+
T Consensus 50 ~~~~~~E~~~il~~i~~~~~vi~Ld~~------Gk~~sSe~fA~~l~~~~~~---------G~~i~f~IGG~~Gl~ 110 (155)
T COG1576 50 ELIKKKEGEAILAAIPKGSYVVLLDIR------GKALSSEEFADFLERLRDD---------GRDISFLIGGADGLS 110 (155)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecC------CCcCChHHHHHHHHHHHhc---------CCeEEEEEeCcccCC
Confidence 334444456666666543344433333 7777777766655555532 356778888875544
No 441
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.17 E-value=2e+02 Score=23.23 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=34.3
Q ss_pred cceEEEcc-CCCcccHHHHhcCCCCCEEEEcCccCc--hHHHHHHHHHh
Q 025540 204 ATRIIYGG-SVNGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSAE 249 (251)
Q Consensus 204 ~i~ilYGG-SV~~~n~~~l~~~~~vDG~LVG~asl~--~~F~~Ii~~~~ 249 (251)
...++|-| .+.+++..+.+.+.+.|-+.+....-. ..+.++++.+.
T Consensus 31 G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 31 GFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 47788888 488899999999999999888654333 46666666553
No 442
>PRK10878 hypothetical protein; Provisional
Probab=21.07 E-value=87 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.9
Q ss_pred cCccCCCCCCCHHHHHHHHHHHHHHH
Q 025540 168 VWAIGTGKVATPAQAQEVHFELRKWL 193 (251)
Q Consensus 168 vWAIGtG~~a~~e~i~~~~~~IR~~l 193 (251)
-|..|.+.+++|+. +++++.||+..
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~ 64 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRN 64 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhc
Confidence 48999888887765 77999999853
No 443
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.06 E-value=7e+02 Score=23.43 Aligned_cols=105 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHH----------------HHHHHHHHHCC---CeEEEEeCCcHHHHhcCCcH
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFV----------------GDKVAYALSQG---LKVIACVGETLEQREAGSTM 141 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i----------------~~Kv~~al~~g---l~pIlCiGE~~~~r~~g~~~ 141 (251)
++.|.++|++++.+|+.-...-.-|.-..+ .+-+++|.++| +...+++-+..-++.-+.+.
T Consensus 28 a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~ 107 (363)
T TIGR02090 28 ARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSR 107 (363)
T ss_pred HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHhccC-CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHH
Q 025540 142 DVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (251)
Q Consensus 142 ~~~~~Ql~~~l~~i~-~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~ 191 (251)
+...+++...++... ..-.+.+.+| ..-.++++++.++.+.+.+
T Consensus 108 ~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 108 DEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHh
No 444
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.04 E-value=66 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=34.4
Q ss_pred ccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 79 iS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
..++++...|-+||+|= -|+-- | +.+.+..=+.++...|+.|++=|-+..
T Consensus 31 ~~~e~~a~~G~D~v~iD-~EHg~-~--~~~~~~~~i~a~~~~g~~~lVRvp~~~ 80 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLD-GEHAP-N--DVSTFIPQLMALKGSASAPVVRVPTNE 80 (256)
T ss_pred HHHHHHHhcCCCEEEEc-cccCC-C--CHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 45778888888888874 12211 1 445566777788889999998886653
No 445
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=21.04 E-value=1.2e+02 Score=28.84 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=29.3
Q ss_pred cceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-hHHH
Q 025540 204 ATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 242 (251)
Q Consensus 204 ~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~~F~ 242 (251)
++-++--++++.......+...++||+|||-+=++ ++-.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~ 327 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPG 327 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHH
Confidence 34466667777777777777899999999998887 5433
No 446
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=20.97 E-value=18 Score=18.31 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=4.7
Q ss_pred ccCccCC
Q 025540 167 PVWAIGT 173 (251)
Q Consensus 167 PvWAIGt 173 (251)
|.||+|.
T Consensus 2 ~~WAvGh 8 (14)
T PF02044_consen 2 PQWAVGH 8 (14)
T ss_dssp -TCHHHC
T ss_pred Cccceee
Confidence 6798884
No 447
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.96 E-value=6e+02 Score=22.59 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=80.6
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~~~ 160 (251)
.+.+.+.|++.+=. |+|--+- ...-++...+.|+.+=+-+--- -.. +++...++.++ --
T Consensus 80 V~~~a~agas~~tf-H~E~~q~-------~~~lv~~ir~~Gmk~G~alkPg-------T~V----e~~~~~~~~~D--~v 138 (224)
T KOG3111|consen 80 VDQMAKAGASLFTF-HYEATQK-------PAELVEKIREKGMKVGLALKPG-------TPV----EDLEPLAEHVD--MV 138 (224)
T ss_pred HHHHHhcCcceEEE-EEeeccC-------HHHHHHHHHHcCCeeeEEeCCC-------CcH----HHHHHhhcccc--EE
Confidence 35677888887643 6665332 5566777888999976655321 111 12333333221 13
Q ss_pred eEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHHhcCCCCCEEEEcCccCc-h
Q 025540 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-P 239 (251)
Q Consensus 161 ~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l~~~~~vDG~LVG~asl~-~ 239 (251)
++.--||=+ .|+.- .+++...++ +|++.| .+.-|---|+|.++|+ ..+.+.+.|-+..|++... +
T Consensus 139 LvMtVePGF---GGQkF----me~mm~KV~-~lR~ky-----p~l~ievDGGv~~~ti-~~~a~AGAN~iVaGsavf~a~ 204 (224)
T KOG3111|consen 139 LVMTVEPGF---GGQKF----MEDMMPKVE-WLREKY-----PNLDIEVDGGVGPSTI-DKAAEAGANMIVAGSAVFGAA 204 (224)
T ss_pred EEEEecCCC---chhhh----HHHHHHHHH-HHHHhC-----CCceEEecCCcCcchH-HHHHHcCCCEEEecceeecCC
Confidence 678899932 34433 333444442 344555 3566778899999999 5566789999999998876 3
Q ss_pred ---HHHHHHHH
Q 025540 240 ---EFIDIIKS 247 (251)
Q Consensus 240 ---~F~~Ii~~ 247 (251)
++.+.++.
T Consensus 205 d~~~vi~~lr~ 215 (224)
T KOG3111|consen 205 DPSDVISLLRN 215 (224)
T ss_pred CHHHHHHHHHH
Confidence 45555543
No 448
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=96 Score=25.44 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=42.7
Q ss_pred EEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 025540 91 WVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (251)
Q Consensus 91 ~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~ 153 (251)
.-+++|++-|++|.---+.|-.-+-.|...+...|= |-|+ |.+.+.+-++.+|+
T Consensus 78 ikvl~h~~d~~~~~~a~evvp~eivkAQStdVD~iS--gAT~-------tS~aiI~svekaLe 131 (135)
T COG3976 78 IKVLKHPSDRRTNRQALEVVPDEIVKAQSTDVDIIS--GATL-------TSRAIIQSVEKALE 131 (135)
T ss_pred EEEecCCCCcchhhhhcccccHHHhhccccccceee--cccc-------chHHHHHHHHHHHh
Confidence 457999999999888777888888888888888774 6554 55677788888776
No 449
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.84 E-value=1.6e+02 Score=25.61 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccHHHH---hcCCCCCEE
Q 025540 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKEL---AAQPDVDGF 230 (251)
Q Consensus 175 ~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~~~l---~~~~~vDG~ 230 (251)
.+.+.+.+++.++.+|+. ..+++|+.||..-.+...+- ...-+.||.
T Consensus 149 ~~~~~~~~~~~i~~L~~~---------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y 198 (213)
T cd02069 149 LVPSLDEMVEVAEEMNRR---------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVY 198 (213)
T ss_pred hhccHHHHHHHHHHHHhc---------CCCCeEEEEChhcCHHHHhhhhccccCCCceE
Confidence 345677777777777653 33799999998776655542 244566764
No 450
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.71 E-value=5.8e+02 Score=22.39 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred eEeeecccccCCccccccccHHHHHhCCCCEEEeCchhhc---cccccChHHHHHHHHHHHHCCCeE-EEEeCC
Q 025540 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERR---LILNELNEFVGDKVAYALSQGLKV-IACVGE 130 (251)
Q Consensus 61 ~vgAQn~~~~~~Ga~TGeiS~~mLkd~G~~~viiGHSERR---~~f~Etd~~i~~Kv~~al~~gl~p-IlCiGE 130 (251)
++|.+|.+..+. .+=+=..+.++++|-++|.++-++-. ..+.-+.+.+..=.+.+.++||.+ -+|.+.
T Consensus 4 ~~~~~~~~~~~~--~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 75 (279)
T TIGR00542 4 PLGIYEKALPKG--ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSA 75 (279)
T ss_pred ccceehhhCCCC--CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCC
Confidence 467777653322 23333456779999999999754421 112334545555555667899985 457653
No 451
>PRK08444 hypothetical protein; Provisional
Probab=20.67 E-value=7.2e+02 Score=23.42 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHhhccCCCCCCceeEE--EcCc--cccHHHHHhhcC---CCceEeeecccccCCccccccccH----HHH
Q 025540 16 TPEEVKKIVSVLNEGQVPSSDVVEVV--VSPP--FVFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEISA----EML 84 (251)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~--i~Pp--~~~L~~~~~~~~---~~i~vgAQn~~~~~~Ga~TGeiS~----~mL 84 (251)
+.+++.+-++...+.-. ..+-++ .-|+ +-++..+...++ +++.++|-........+-.--.|. ..|
T Consensus 81 s~eeI~~~a~~a~~~G~---~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~L 157 (353)
T PRK08444 81 SHEEILEIVKNSVKRGI---KEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDM 157 (353)
T ss_pred CHHHHHHHHHHHHHCCC---CEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56777666665443111 112222 1132 233444444343 346666633222222222222444 899
Q ss_pred HhCCCCEEEeC-----chhhcccc---ccChHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 025540 85 VNLEIPWVILG-----HSERRLIL---NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKAIA 152 (251)
Q Consensus 85 kd~G~~~viiG-----HSERR~~f---~Etd~~i~~Kv~~al~~gl~p----IlCiGE~~~~r~~g~~~~~~~~Ql~~~l 152 (251)
||.|.+-.--| +.+-|+.. +.+.+..-.=.+.|.+.||.. ++=.|||.++|-. ....|+.+-
T Consensus 158 keAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~------hl~~Lr~Lq 231 (353)
T PRK08444 158 LEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRID------HMLRLRDLQ 231 (353)
T ss_pred HHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHH------HHHHHHHhc
Confidence 99999854332 22223333 233344444457788999874 6667899988720 111222211
Q ss_pred hccCCCCCeE-EEEccc-CccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcccH--HHHhcCCCCC
Q 025540 153 DRVSSWSNIV-LAYEPV-WAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANC--KELAAQPDVD 228 (251)
Q Consensus 153 ~~i~~~~~~i-IAYEPv-WAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~n~--~~l~~~~~vD 228 (251)
..-.....++ +.|.|. =-.+.-..+++++.-.+++.-|=.+.. + ++++. |--....+-+ .=.+.-.|+|
T Consensus 232 ~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~-i-----~ni~a-~w~~~g~~~~q~~L~~Ga~D~g 304 (353)
T PRK08444 232 DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDN-I-----PHIKA-YWATLTLNLALVAQEFGANDLD 304 (353)
T ss_pred cccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCC-C-----Ccccc-ccccCcHHHHHHHHhcCCccCc
Confidence 1101233344 667773 011212247899999999988876632 2 23332 2111112222 1223677899
Q ss_pred EEEE
Q 025540 229 GFLV 232 (251)
Q Consensus 229 G~LV 232 (251)
|.++
T Consensus 305 gt~~ 308 (353)
T PRK08444 305 GTIE 308 (353)
T ss_pred cccc
Confidence 9984
No 452
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.63 E-value=6e+02 Score=22.53 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcH
Q 025540 108 EFVGDKVAYALSQGLKVIACVGETL 132 (251)
Q Consensus 108 ~~i~~Kv~~al~~gl~pIlCiGE~~ 132 (251)
+...+=++..++.|+..+++.|.+-
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3445566777778888888777763
No 453
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.60 E-value=3.8e+02 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 025540 170 AIGTGKVATPAQAQEVHFELRKWLLAN 196 (251)
Q Consensus 170 AIGtG~~a~~e~i~~~~~~IR~~l~~~ 196 (251)
.+||+....|..++++.+.+.+++.+.
T Consensus 258 ~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 258 QVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred EEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 456776678999999999999988765
No 454
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=20.53 E-value=5.9e+02 Score=25.07 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=49.8
Q ss_pred eCCcHHHHhcCCcHHHHHHHHHHHHhc--cC-CCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCc
Q 025540 128 VGETLEQREAGSTMDVVAAQTKAIADR--VS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAA 204 (251)
Q Consensus 128 iGE~~~~r~~g~~~~~~~~Ql~~~l~~--i~-~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~ 204 (251)
-|.|+.|++ +..+.+..-++..++. +. .|.-.-+=..|.+.-|.-..++|+.-+.+.+.+++.+.- ..+.+.+
T Consensus 105 eg~~~~E~~--~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~TnPd~~Vra~A~~qvk~alD~--~~eLGge 180 (434)
T TIGR02630 105 EGASLRETN--ANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMHGAATSPDADVFAYAAAQVKKALEV--TKKLGGE 180 (434)
T ss_pred CCCCHHHHH--HHHHHHHHHHHHHHHhhCceeeeecCCccCCccccCCcCCCCCHHHHHHHHHHHHHHHHH--HHHhCCC
Confidence 377776653 2344444444444442 21 122222457899999999999999988888888877521 1122445
Q ss_pred ceEEEccC
Q 025540 205 TRIIYGGS 212 (251)
Q Consensus 205 i~ilYGGS 212 (251)
.-|+.||-
T Consensus 181 nyV~WgGR 188 (434)
T TIGR02630 181 NYVFWGGR 188 (434)
T ss_pred eEEECCCc
Confidence 66899985
No 455
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.53 E-value=2.3e+02 Score=25.45 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=43.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccC----CCcccHHHHhcCCCCCEEEEcCcc
Q 025540 170 AIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGS----VNGANCKELAAQPDVDGFLVGGAS 236 (251)
Q Consensus 170 AIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGS----V~~~n~~~l~~~~~vDG~LVG~as 236 (251)
..|||.-..|+.++.+...+-+. + ..+. |+|+|- =.|.-+.+++++.++-.+.||.|-
T Consensus 36 VvgsgaKM~Pe~veaav~~~~e~----~----~pDf-vi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 36 VVGSGAKMDPECVEAAVTEMLEE----F----NPDF-VIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred EeccccccChHHHHHHHHHHHHh----c----CCCE-EEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 56999999999988777644332 2 2222 777653 356789999999999999999875
No 456
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=20.46 E-value=1.1e+02 Score=27.06 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=33.3
Q ss_pred CCEEEeCchhhccccccChHHHHHHHHHHHHCCC-----eEEEEeCCc
Q 025540 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGL-----KVIACVGET 131 (251)
Q Consensus 89 ~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl-----~pIlCiGE~ 131 (251)
.-+|.||=+|+-----+--+.+++-+..+++... .+++|+|-.
T Consensus 92 s~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~ 139 (213)
T PF04414_consen 92 SVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGG 139 (213)
T ss_dssp EEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S-
T ss_pred cEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCc
Confidence 6689999999966545556788888888888887 999999976
No 457
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=20.43 E-value=4.3e+02 Score=22.79 Aligned_cols=51 Identities=25% Similarity=0.180 Sum_probs=35.6
Q ss_pred ccccHHHHHhCCCCEEEeC--chhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 025540 77 GEISAEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (251)
Q Consensus 77 GeiS~~mLkd~G~~~viiG--HSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~ 133 (251)
..-.++.|+++|.+.+-+| |. |.--.+-+.+.++...++|+.. ++.|.+.+
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~-----fD~G~~gl~~t~~~l~~~~i~~-~g~~~~~~ 118 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHT-----LDYGEEGLLDTLDALDEAGIAH-AGAGRNLE 118 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccc-----cccchHHHHHHHHHHHHcCCce-eECCCCHH
Confidence 3446789999999998775 86 4444455666667777788774 66777653
No 458
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.34 E-value=2.5e+02 Score=23.82 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=34.6
Q ss_pred cHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEE
Q 025540 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC 127 (251)
Q Consensus 80 S~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlC 127 (251)
.++.|+++|+.|..-=-|-+| |-+.+-+=++.|.+.|+.+|+-
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHR-----TPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHR-----TPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccC-----CHHHHHHHHHHHHHCCCeEEEe
Confidence 368999999999776666666 6777778888999999988774
No 459
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.29 E-value=7.1e+02 Score=23.22 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=107.4
Q ss_pred cccCCCHHHHHHHHHHhhccCCCCCCceeEE---------------EcCccccHHHHHhhcCCCceEeeecccccCCccc
Q 025540 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV---------------VSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAF 75 (251)
Q Consensus 11 wKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~---------------i~Pp~~~L~~~~~~~~~~i~vgAQn~~~~~~Ga~ 75 (251)
|+.+.+.++..++++.|.+.-+ +-+|+. ..||.-++..+.+..+ +..+++ ...+|-.
T Consensus 17 ~~~~f~~~~~~~ia~~Ld~aGV---~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~----ll~pg~~ 88 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAALDEAGV---DAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAV----LLLPGIG 88 (333)
T ss_pred CCCcCCHHHHHHHHHHHHHcCC---CEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEE----EeccCcc
Confidence 4456778999999998876432 234442 2244445555544433 222221 1122222
Q ss_pred cccccHHHHHhCCCCEEEeCchhhccccccChHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 025540 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (251)
Q Consensus 76 TGeiS~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i 155 (251)
|= -..++..+.|++.+=|.= ..+|. +.+.+-++.|.+.|+.+.+|+=.+. .-+.+.+.+|.+.+.+.
T Consensus 89 ~~-~dl~~a~~~gvd~iri~~-----~~~e~-d~~~~~i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~- 155 (333)
T TIGR03217 89 TV-HDLKAAYDAGARTVRVAT-----HCTEA-DVSEQHIGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESY- 155 (333)
T ss_pred CH-HHHHHHHHCCCCEEEEEe-----ccchH-HHHHHHHHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhc-
Confidence 21 236788899999876542 12233 3466788999999999888775442 34677888888876541
Q ss_pred CCCCCeEEEEcccCccCCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcceEEEccCCCcc----cHHHHhc--CCCCCE
Q 025540 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA----NCKELAA--QPDVDG 229 (251)
Q Consensus 156 ~~~~~~iIAYEPvWAIGtG~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~i~ilYGGSV~~~----n~~~l~~--~~~vDG 229 (251)
. ...+.|+ =|.-.++|+++.+.++.+|+.+. ++++|=+=+.=|.+ |+..-+. ..-||+
T Consensus 156 G-a~~i~i~-------DT~G~~~P~~v~~~v~~l~~~l~--------~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~ 219 (333)
T TIGR03217 156 G-ADCVYIV-------DSAGAMLPDDVRDRVRALKAVLK--------PETQVGFHAHHNLSLAVANSIAAIEAGATRIDA 219 (333)
T ss_pred C-CCEEEEc-------cCCCCCCHHHHHHHHHHHHHhCC--------CCceEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 1 1222222 24456899999999999997642 24667665554444 4433332 223666
Q ss_pred EEEc
Q 025540 230 FLVG 233 (251)
Q Consensus 230 ~LVG 233 (251)
-+-|
T Consensus 220 Sl~G 223 (333)
T TIGR03217 220 SLRG 223 (333)
T ss_pred eccc
Confidence 6543
No 460
>PLN02433 uroporphyrinogen decarboxylase
Probab=20.21 E-value=4.4e+02 Score=24.40 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHhCCCCEEEeCchhhccccccChHHHHHHH--HHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 025540 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKV--AYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (251)
Q Consensus 81 ~~mLkd~G~~~viiGHSERR~~f~Etd~~i~~Kv--~~al~~gl~pIlCiGE~~~~r~~g~~~~~~~~Ql~~~l~~i~~~ 158 (251)
.+.+++.|++.+=+++.. +-....+++ +.++.-++.|++..| |.+.+.++.+.+++....
T Consensus 246 ~~~~~~~~~~~i~~d~~~-------dl~e~~~~~g~~~~l~GNi~p~ll~g----------t~e~i~~~v~~~i~~~~~- 307 (345)
T PLN02433 246 LERLAGTGVDVIGLDWTV-------DMADARRRLGSDVAVQGNVDPAVLFG----------SKEAIEKEVRDVVKKAGP- 307 (345)
T ss_pred HHHHHhcCCCEEEcCCCC-------CHHHHHHHhCCCeEEEeCCCchhhCC----------CHHHHHHHHHHHHHHcCC-
Confidence 567778888765555551 111222222 123334455544433 455677788888875422
Q ss_pred CCeEEEEcccCccCCCCCC--CHHHHHHHHHHHHHH
Q 025540 159 SNIVLAYEPVWAIGTGKVA--TPAQAQEVHFELRKW 192 (251)
Q Consensus 159 ~~~iIAYEPvWAIGtG~~a--~~e~i~~~~~~IR~~ 192 (251)
...|+ +-|-|.++ .+|-++.+++++|++
T Consensus 308 ~g~Il------~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 308 QGHIL------NLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CCeEE------ecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 23444 45777764 689999999999985
Done!