RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025540
(251 letters)
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 508 bits (1311), Expect = 0.0
Identities = 221/251 (88%), Positives = 230/251 (91%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
M RKFFVGGNWKCNGT EEVKKIV+ LNE +VPS DVVEVVVSPPFVFL LVKS LRP F
Sbjct: 1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDF 60
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
VAAQNCWVKKGGAFTGEISAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61 QVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
GLKVIACVGETLEQRE+GSTMDVVAAQTKAIAD+VS W+N+VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPA 180
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240
QAQEVH ELRKWL N SPE+AA TRIIYGGSV GANCKELAAQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKPE 240
Query: 241 FIDIIKSAELK 251
FIDIIKSA +K
Sbjct: 241 FIDIIKSATVK 251
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 384 bits (988), Expect = e-136
Identities = 152/252 (60%), Positives = 185/252 (73%), Gaps = 4/252 (1%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
M RK FVGGNWKCNGT +K+++ N+ + ++V +VVV+PP + + LV+ L+
Sbjct: 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNV-DVVVAPPSLHIPLVQEKLKNKN 60
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
F +++QN + GAFTGEISAEML +L I W ILGHSERR E NE V KV AL
Sbjct: 61 FKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALE 120
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
GLKVI C+GETLE+REAG T DV++ Q +AI +VS +W NIV+AYEPVWAIGTGKVA
Sbjct: 121 NGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVA 180
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237
TP QAQEVH +RKWL ++A ATRIIYGGSVN NCKEL QPD+DGFLVGGASL
Sbjct: 181 TPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASL 240
Query: 238 KPEFIDIIKSAE 249
KP+F+DIIKSAE
Sbjct: 241 KPDFVDIIKSAE 252
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 346 bits (890), Expect = e-122
Identities = 134/244 (54%), Positives = 156/244 (63%), Gaps = 4/244 (1%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
V GNWK NGT E ++ LN S V EVVV+PPF +L V +L V
Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGV-EVVVAPPFTYLAAVAEALEGSKIKVG 59
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
AQN + GAFTGEISAEML + +VI+GHSERR E +E V KV AL GL
Sbjct: 60 AQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLT 119
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
I CVGETLE+REAG T +VVAAQ A+ V + +V+AYEPVWAIGTGK A+P QAQ
Sbjct: 120 PILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQ 179
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FI 242
EVH +RK LA E+A RI+YGGSVN N EL AQPD+DG LVGGASLK E F+
Sbjct: 180 EVHAFIRKL-LAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFL 238
Query: 243 DIIK 246
DIIK
Sbjct: 239 DIIK 242
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 328 bits (844), Expect = e-114
Identities = 134/251 (53%), Positives = 163/251 (64%), Gaps = 6/251 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
RK + GNWK N T E K +V L +P +D VEV V+PPF L VK +L+
Sbjct: 1 RKPIIAGNWKMNKTLAEAKALVEELKA-ALPDADGVEVAVAPPFTALASVKEALKGSNIK 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQN + GAFTGEISAEML +L + +VI+GHSERR E +E V KV AL G
Sbjct: 60 LGAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
L I CVGETLE+REAG T +VVA Q +A +S ++N+V+AYEPVWAIGTGK ATP
Sbjct: 120 LTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 239
QAQEVH +R LA E+A RI+YGGSV N EL AQPD+DG LVGGASLK
Sbjct: 180 EQAQEVHAFIRAV-LAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKA 238
Query: 240 E-FIDIIKSAE 249
E F+ I+K+A
Sbjct: 239 EDFLAIVKAAA 249
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 314 bits (807), Expect = e-109
Identities = 131/244 (53%), Positives = 162/244 (66%), Gaps = 5/244 (2%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
+ GNWK N T E ++ L + + V EVVV+PPF +L VK +L+ V
Sbjct: 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGV-EVVVAPPFTYLSPVKQALKGSNIKVG 59
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
AQN + GAFTGE+SAEML +L + +VI+GHSERR E +E V KV AL GL
Sbjct: 60 AQNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLT 119
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQA 182
+ CVGETLE+REAG T++V+ Q KAI + W N+++AYEPVWAIGTGKVATP QA
Sbjct: 120 PVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQA 179
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-F 241
QEVH +RK+ LA S E+A RI+YGGSVN N EL AQPD+DGFLVGGASLK E F
Sbjct: 180 QEVHAFIRKY-LAELSKEVAEEVRILYGGSVNPDNAAELLAQPDIDGFLVGGASLKAESF 238
Query: 242 IDII 245
+ II
Sbjct: 239 LAII 242
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 294 bits (756), Expect = e-101
Identities = 125/248 (50%), Positives = 153/248 (61%), Gaps = 4/248 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPG-FH 61
RK V GNWK N T E K +V L V D VEV ++PPF L V + G
Sbjct: 2 RKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIK 61
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
V AQN + GAFTGEISAEML +L +V++GHSERRL E +E + KV A G
Sbjct: 62 VGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG 121
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
L I CVGETLE+REAG T++V+ Q A +S +NIV+AYEPVWAIGTGK A+PA
Sbjct: 122 LTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPAD 181
Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE- 240
A+EVH +R L E RI+YGGSV N ELAAQPD+DG LVGGASLK +
Sbjct: 182 AEEVHAFIRAVLAELFGAE--EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD 239
Query: 241 FIDIIKSA 248
F+ I+++
Sbjct: 240 FLAILEAL 247
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 281 bits (720), Expect = 3e-95
Identities = 158/249 (63%), Positives = 185/249 (74%), Gaps = 3/249 (1%)
Query: 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVA 63
KFFVGGNWKCNGT + + K++S LN + + V+VVVSPPFV++ VKSSL ++
Sbjct: 65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEAD--VDVVVSPPFVYIDQVKSSLTDRIDIS 122
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
QN WV KGGAFTGEIS E L +L WVILGHSERR ++ E +EF+G K AYALS+GL
Sbjct: 123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
VIAC+GE LE+REAG T DV AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQ
Sbjct: 183 VIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQ 242
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 242
EVH +R WL N S E+A+ TRIIYGGSVNG N ELA + D+DGFLVGGASLK PEF
Sbjct: 243 EVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFA 302
Query: 243 DIIKSAELK 251
I+ S K
Sbjct: 303 TIVNSVTSK 311
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 240 bits (615), Expect = 2e-75
Identities = 122/251 (48%), Positives = 149/251 (59%), Gaps = 10/251 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVV--EVVVSPPFVFLGLVKSSLR-PG 59
RK + GNWK N TP E K+ V+ L EVVV PPF L VK ++
Sbjct: 397 RKPIIAGNWKMNKTPAEAKEFVNEL----KKYVKDAQAEVVVCPPFTALPSVKEAVDGSN 452
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ AQN + ++ GA+TGEIS ML + + +VI+GHSERR E +E V KV AL
Sbjct: 453 IKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALK 512
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVA 177
GL I CVGETL++RE+G T DVV Q KA + +S+ +V+AYEPVWAIGTGKVA
Sbjct: 513 AGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVA 572
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237
TP QAQEVH +RK + E A RI+YGGSV N L QPD+DG LVGGASL
Sbjct: 573 TPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASL 632
Query: 238 KP-EFIDIIKS 247
K EF I
Sbjct: 633 KAQEFAAIANY 643
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 217 bits (554), Expect = 1e-71
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 6 FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
V GNWK N + V+ + E +V S V V V+PPFV L ++K + V A
Sbjct: 1 LVIGNWKTYNESRGMRALEVAKIAE-EVASEAGVAVAVAPPFVDLPMIKREVE--IPVYA 57
Query: 65 QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
Q+ GA TGEISAEML ++ ++ HSERR+ L + + K+A GL
Sbjct: 58 QHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTS 113
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
+ C + V A A V+A EP IGTG +PAQ +
Sbjct: 114 VVCT-------------NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEV 155
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240
VH +R E+ + R++ G ++ ELAAQ +G L+ SLK +
Sbjct: 156 VHGSVR------AVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKAD 205
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 210 bits (537), Expect = 4e-68
Identities = 107/258 (41%), Positives = 147/258 (56%), Gaps = 16/258 (6%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIV-SVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL----- 56
R+ V GNWK NG+ +++ + Q +D EVV+ PP ++L V+ L
Sbjct: 4 RRPMVAGNWKMNGSAALAQELFKKFAGKLQ---NDSAEVVLCPPSIYLESVRQLLEANKE 60
Query: 57 ---RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
+ AQN GA+TGE+S +ML + +VI+GHSERR + E + V +K
Sbjct: 61 ALDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEK 120
Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVS-SWSNIVLAYEPVWAI 171
A A GL I CVGE+ REA T +V+A + I + ++ N ++AYEP+WA+
Sbjct: 121 FAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAV 180
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 231
GTGK ATP QAQEVH +RK L+ SP I RI+YGGSV +N +L AQPDVDG L
Sbjct: 181 GTGKSATPEQAQEVHAFIRK-RLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239
Query: 232 VGGASLKP-EFIDIIKSA 248
+GGASL EF+ + A
Sbjct: 240 IGGASLNSTEFLSLCTIA 257
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 171 bits (434), Expect = 7e-53
Identities = 88/246 (35%), Positives = 123/246 (50%), Gaps = 14/246 (5%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
F + NWK NG + L+ + +++V+ PPF + P + A
Sbjct: 3 FLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVE-CNPNIKLGA 61
Query: 65 QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
QNC+ G +TGEISA+ML +VILGHSERR +E + + K A+ GL
Sbjct: 62 QNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
I CVGETLE RE G T DV+ Q + + ++AYEPVWAIG + + E
Sbjct: 122 IICVGETLEDRENGMTKDVLLEQCS---NCLPKHGEFIIAYEPVWAIGGSTIPSNDAIAE 178
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FID 243
FE+ + + S + IIYGGSVN N ++L + + G LVG ASL + F
Sbjct: 179 A-FEIIR---SYDS-----KSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCK 229
Query: 244 IIKSAE 249
II+ E
Sbjct: 230 IIQQVE 235
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 167 bits (425), Expect = 2e-51
Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
Query: 9 GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCW 68
GNWK NG +K++ S +++ Q +S V + V P V++ V S L V QN
Sbjct: 7 GNWKMNGNSTSIKELCSGISQVQYDTSRVA-IAVFPSSVYVKEVISQLPEKVGVGLQNIT 65
Query: 69 VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
GA+TGEISA ML ++ ++++GHSERR + E +E V K+ + + + C+
Sbjct: 66 FYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCI 125
Query: 129 GETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
GE+L+ R++G V+A Q I + +S + +V+AYEPVWAIGTG VA+ Q QE H
Sbjct: 126 GESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETH 185
Query: 187 FELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 245
+R LLA +A +I+YGGS+ N K++ + PDVDG L+GGASLK EF +II
Sbjct: 186 QFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEII 244
Query: 246 KSA 248
A
Sbjct: 245 NQA 247
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 133 bits (336), Expect = 4e-37
Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 1 MGRKFFVGGNWKC-NGTPEEVKKIVSVLNEGQVPSSDV-VEVVVSPPFVFLG----LVKS 54
M +K + G N K G E V + +L + SD +E+ V P ++ L S
Sbjct: 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAAS 60
Query: 55 -SLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
+ P + AQN K G FTGEIS ML L I V++GHSERR +L E ++ +K
Sbjct: 61 ETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEK 120
Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAI 171
V AL G + C+GETLEQ+ + +V+ Q K VS+ ++ +AYEPVWAI
Sbjct: 121 VLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQLPHLFIAYEPVWAI 180
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 231
G G + A+ + + K L E + ++YGGSVN N EL +P +DG
Sbjct: 181 GEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLF 240
Query: 232 VG 233
+G
Sbjct: 241 IG 242
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 115 bits (289), Expect = 4e-31
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 11/241 (4%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNE--GQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
+K + G N K + ++ L+E +P+ +E+ V P F + ++
Sbjct: 2 KKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIP 61
Query: 61 H-----VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVA 115
H + AQN G FTG+IS ML + V++GHSERR E ++ KV
Sbjct: 62 HDHPIIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVL 121
Query: 116 YALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGT 173
AL + CVGETLEQ+ G + +++ Q K ++ + + +AYEPVWAIG
Sbjct: 122 AALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGE 181
Query: 174 GKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLV 232
+ A+ A E H +++ L+ + + YGGSVN N EL QP +DG +
Sbjct: 182 AGIPASADYADEKHAVIKQCLI-ELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFI 240
Query: 233 G 233
G
Sbjct: 241 G 241
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 53.3 bits (129), Expect = 1e-08
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHS 97
V + V+P + + V + V AQ+ + G+ TG I E + + ++ HS
Sbjct: 37 VRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS 94
Query: 98 ERRLILNELNEFVGDKVAYALSQGLKVIACV 128
ERRL L + + V A GL+ + CV
Sbjct: 95 ERRLTLAD----IEAVVERAKKLGLESVVCV 121
>gnl|CDD|237766 PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 269
Score = 31.1 bits (71), Expect = 0.40
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGA---NCKELA 222
+PV+A G G + +P L + +A P+I +T Y G + KE+
Sbjct: 142 KPVYATGIGDIFSPID-----LSLSGYYIALVKPDIHVSTAEAYAGIKPHKPETSLKEII 196
Query: 223 AQP 225
QP
Sbjct: 197 RQP 199
>gnl|CDD|214566 smart00216, VWD, von Willebrand factor (vWF) type D domain. Von
Willebrand factor contains several type D domains: D1
and D2 are present within the N-terminal propeptide
whereas the remaining D domains are required for
multimerisation.
Length = 163
Score = 30.4 bits (69), Expect = 0.46
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 10 NWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV------VSPPFVFLGLVKSSLRPGFHVA 63
N C G +K + LN ++ D V VS P+ G ++
Sbjct: 54 NVPCGGGATCLKSVKVELNGDEIELKDDNGKVTVNGQQVSLPYKTSDGSIQIRSSGGYLV 113
Query: 64 AQN 66
Sbjct: 114 VIT 116
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase.
Length = 151
Score = 29.9 bits (68), Expect = 0.62
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 144 VAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193
V K D +S L +PV + G + +LR+ L
Sbjct: 84 VPGALKNAIDWLSRDGGKELRGKPVAIVSVG--GGRSGGLRALEQLRQVL 131
>gnl|CDD|226105 COG3576, COG3576, Predicted flavin-nucleotide-binding protein
structurally related to pyridoxine 5'-phosphate oxidase
[General function prediction only].
Length = 173
Score = 27.8 bits (62), Expect = 4.1
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 128 VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGT 173
GET Q AG M + T+ + D + + + + A+ T
Sbjct: 3 SGETAVQLRAGYKMRTMVKLTQKMKDLLENHYREFIQTSQLAALAT 48
>gnl|CDD|215273 PLN02495, PLN02495, oxidoreductase, acting on the CH-CH group of
donors.
Length = 385
Score = 27.9 bits (62), Expect = 5.9
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 132 LEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191
+ +R+ G+ + Q + + V W N A PVWA T + Q V
Sbjct: 154 MPERKMGAAV----GQDCDLLEEVCGWINAK-ATVPVWAKMTPNITDITQPARVA----- 203
Query: 192 WLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGF-LVGGASLK 238
L + +AA I+ SV G N L +P V+G+ GG S K
Sbjct: 204 --LKSGCEGVAAINTIM---SVMGINLDTLRPEPCVEGYSTPGGYSSK 246
>gnl|CDD|218465 pfam05144, Phage_CRI, Phage replication protein CRI. The phage
replication protein CRI, is also known as Gene II, is
essential for DNA replication.
Length = 235
Score = 26.9 bits (60), Expect = 9.4
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGAN 217
W + + ++ V + G+VA+ + EV + K L + S A + G A
Sbjct: 4 WLTLRIPFKHVSPVDAGEVASVSADGEVEWHSDKRLTVSGSHYSGIAFKSYQDGGFGFAT 63
Query: 218 CKELAAQP 225
C E+ P
Sbjct: 64 CLEIKGNP 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,099,449
Number of extensions: 1260397
Number of successful extensions: 1100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 29
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)