RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025540
(251 letters)
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 227 bits (578), Expect = 2e-75
Identities = 148/247 (59%), Positives = 181/247 (73%), Gaps = 2/247 (0%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
RKFFVGGNWK NG + + ++++ LN +VP+ EVV +PP ++ + L P V
Sbjct: 2 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPAD--TEVVCAPPTAYIDFARQKLDPKIAV 59
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AAQNC+ GAFTGEIS M+ + WV+LGHSERR + E +E +G KVA+ALS+GL
Sbjct: 60 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGL 119
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
VIAC+GE L++REAG T VV QTK IAD V WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 120 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 179
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFI 242
QEVH +LR WL +N S +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+
Sbjct: 180 QEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFV 239
Query: 243 DIIKSAE 249
DII + +
Sbjct: 240 DIINAKQ 246
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 219 bits (559), Expect = 2e-72
Identities = 115/249 (46%), Positives = 145/249 (58%), Gaps = 4/249 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
RK + GNWK + T E KK VS+L ++ E+VV PPF L V L
Sbjct: 2 RKLILAGNWKMHKTISEAKKFVSLLVN-ELHDVKEFEIVVCPPFTALSEVGEILSGRNIK 60
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQN + + GAFTGEIS ML + + +VI+GHSERR I E +EF+ KV L +G
Sbjct: 61 LGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKG 120
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATP 179
+ I CVGETLE+RE G T VV Q + +V+AYEPVWAIGTG+VATP
Sbjct: 121 MTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATP 180
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 239
QAQEVH +RK L E A + RI+YGGS+ N L Q D+DG LVGGASLK
Sbjct: 181 QQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKE 240
Query: 240 EFIDIIKSA 248
FI++ +
Sbjct: 241 SFIELARIM 249
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 218 bits (556), Expect = 6e-72
Identities = 138/248 (55%), Positives = 169/248 (68%), Gaps = 2/248 (0%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
+ RKFFVGGNWK NG V IV+ LN SS V+VVV+PP +L KS L+ G
Sbjct: 9 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLKAGV 66
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
VAAQNC+ GAFTGEIS M+ +L + WVILGHSERR + E + + +K +AL
Sbjct: 67 LVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEA 126
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
G+KV+ C+GE LE+REAG T DV Q +AI D+ SW NIV+AYEPVWAIGTGK A+
Sbjct: 127 GIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGE 186
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240
QAQEVH +R +L SP +A ATRIIYGGSV N EL +PD+DGFLVGGASLKP+
Sbjct: 187 QAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPD 246
Query: 241 FIDIIKSA 248
F+ II +
Sbjct: 247 FVKIINAR 254
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 215 bits (547), Expect = 1e-70
Identities = 122/246 (49%), Positives = 168/246 (68%), Gaps = 3/246 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
R FFVGGN+K NG+ + +K+IV LN +P + VEVV+ PP +L S ++
Sbjct: 2 RTFFVGGNFKLNGSKQSIKEIVERLNTASIPEN--VEVVICPPATYLDYSVSLVKKPQVT 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
V AQN ++K GAFTGE S + + ++ +VILGHSERR +E ++F+ DK +AL QG
Sbjct: 60 VGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
+ VI C+GETLE+++AG T+DVV Q A+ + V ++N+V+AYEPVWAIGTG ATP
Sbjct: 120 VGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPED 179
Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 241
AQ++H +RK+L + + A+ RI+YGGS NG+N + DVDGFLVGGASLKPEF
Sbjct: 180 AQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEF 239
Query: 242 IDIIKS 247
+DII S
Sbjct: 240 VDIINS 245
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 214 bits (545), Expect = 2e-70
Identities = 115/246 (46%), Positives = 152/246 (61%), Gaps = 1/246 (0%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
RK+FV NWKCNGT E +K + + N S + +VVV P V + L+ F
Sbjct: 1 RKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKL-DVVVFPVSVHYDHTRKLLQSKFST 59
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
QN G++TGE+SAE+ +L I +VI+GH ERR +E +E V +K+ +L L
Sbjct: 60 GIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNL 119
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
K + C GE+LEQRE T++V+ Q KA D + ++ N++L YEP+WAIGTGK ATP QA
Sbjct: 120 KAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQA 179
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFI 242
Q VH E+RK + + A RI+YGGSVN NC L Q D+DGFLVG ASLK F+
Sbjct: 180 QLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFV 239
Query: 243 DIIKSA 248
DIIKSA
Sbjct: 240 DIIKSA 245
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 208 bits (531), Expect = 3e-68
Identities = 109/250 (43%), Positives = 145/250 (58%), Gaps = 5/250 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLG-LVKSSLRPGFH 61
RK + GNWK NGT E + V + G VP +D V VV PF+FL LV+++
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVK-GHVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQ GA+TGE+S ML +L + +VILGHSERR + E +E V KV A ++G
Sbjct: 60 IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATP 179
L I C GE+LE+REAG T VVA+Q + V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 239
A V +R + PE A A RI YGGSV N ++ AQ +DG LVGGASL+P
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEP 239
Query: 240 E-FIDIIKSA 248
F+ ++++
Sbjct: 240 ASFLQLVEAG 249
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 208 bits (530), Expect = 5e-68
Identities = 133/248 (53%), Positives = 168/248 (67%), Gaps = 4/248 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
+ NWKCNGT ++K+V V NE S V+ VV+P FV + LV++ LR +V
Sbjct: 3 PQPIAAANWKCNGTTASIEKLVQVFNEH--TISHDVQCVVAPTFVHIPLVQAKLRNPKYV 60
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
+ + K GAFTGE+S +L ++ + WVILGHSERR E +E V KV+ A QG
Sbjct: 61 ISAQNAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGF 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPA 180
VIAC+GETL+QREA T VV +QT AIA +++ W+ +VLAYEPVWAIGTGKVATP
Sbjct: 121 MVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPE 180
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240
QAQEVH LRKW+ N ++AA RI+YGGSVN AN L A+PD++GFLVGGASLKPE
Sbjct: 181 QAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE 240
Query: 241 FIDIIKSA 248
F DII +
Sbjct: 241 FRDIIDAT 248
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 201 bits (512), Expect = 2e-65
Identities = 118/249 (47%), Positives = 159/249 (63%), Gaps = 4/249 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
+ NWKCNG+ + + +++ + N + V+ VV+ FV L + K L V
Sbjct: 3 PQPIAAANWKCNGSQQSLSELIDLFNSTSINHD--VQCVVASTFVHLAMTKERLSHPKFV 60
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
A + K GAFTGE+S +L + + W++LGHSERR E NE V DKVA A++ G
Sbjct: 61 IAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 120
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPA 180
VIAC+GETL++RE+G T VV Q AIA + + W+ +V+AYEPVWAIGTGKVATP
Sbjct: 121 MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQ 180
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 240
QAQE H + W+ + ++A RI+YGGSVNG N + L Q DV+GFLVGGASLKPE
Sbjct: 181 QAQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 240
Query: 241 FIDIIKSAE 249
F+DIIK+ +
Sbjct: 241 FVDIIKATQ 249
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 200 bits (509), Expect = 9e-65
Identities = 136/258 (52%), Positives = 168/258 (65%), Gaps = 10/258 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVK-----SSL 56
KF VGGNWKCNGT ++ + + + VEV+V PF+++ V+ +
Sbjct: 3 GKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEAN 62
Query: 57 RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
V+A+N W K G A+TGE+ MLV+ ++P+VILGHSERR I +E NE V +KV
Sbjct: 63 GANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKV 121
Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTG 174
A+ GLKVIAC+GET QR A T +VVAAQ KAI + +W NI+LAYEPVWAIGTG
Sbjct: 122 AIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTG 181
Query: 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGG 234
K ATP QAQEVH +RKW+ N S E+A ATRI YGGSVN ANC ELA + D+DGFLVGG
Sbjct: 182 KTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGG 241
Query: 235 ASLKPE-FIDIIKSAELK 251
ASL F II S K
Sbjct: 242 ASLDAAKFKTIINSVSEK 259
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 197 bits (500), Expect = 1e-63
Identities = 103/253 (40%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR---PG 59
R V GNWK NG+ E V +++ LN ++ V+V V+PP +F+ L + +L
Sbjct: 1 RHPVVMGNWKLNGSKEMVVDLLNGLNA-ELEGVTGVDVAVAPPALFVDLAERTLTEAGSA 59
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ AQN + GAFTG++S ML +I+GHSERR E +EFV K A+
Sbjct: 60 IILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKE 119
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVA 177
GL + C+GE+ Q EAG TM V A Q A+ + V + ++AYEP+WAIGTGK A
Sbjct: 120 NGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAA 179
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 237
T AQ +H ++R + A S +A I YGGSV N AQPD+DG LVGGA+L
Sbjct: 180 TAEDAQRIHAQIRAHI-AEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAAL 238
Query: 238 KPE-FIDIIKSAE 249
+ F I K+A
Sbjct: 239 DAKSFAAIAKAAA 251
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 193 bits (492), Expect = 3e-62
Identities = 110/251 (43%), Positives = 146/251 (58%), Gaps = 6/251 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
R V GNWK NG+ V ++VS L + ++ V ++PP +++ + K
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRK-ELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQN + GAFTGE SA ML ++ ++I+GHSERR E +E + K A QG
Sbjct: 61 LGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
L + C+GET + EAG T +V A Q A+ ++ V+AYEPVWAIGTGK ATP
Sbjct: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 239
AQAQ VH +R +A IA I YGGSVN +N EL AQPD+DG LVGGASLK
Sbjct: 181 AQAQAVHKFIRDH-IAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239
Query: 240 E-FIDIIKSAE 249
+ F I+K+AE
Sbjct: 240 DAFAVIVKAAE 250
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 134 bits (338), Expect = 1e-39
Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 32/249 (12%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
R + N+K G + + + V +VV+P + LGLV S+ V
Sbjct: 2 RLPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVSQSVD--IPV 59
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AQ V+ GGA T +S E + VIL HSE L LN+L VA A S GL
Sbjct: 60 YAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLA----RLVAKAKSLGL 115
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
V+ C + ++ +A EP IGTG+ + +
Sbjct: 116 DVVVCAPDPRTSLA------------------AAALGPHAVAVEPPELIGTGRAVSRYKP 157
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-- 240
+ + + +I G + + A + G L+ A++K +
Sbjct: 158 EAIVETVGLV------SRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDP 211
Query: 241 FIDIIKSAE 249
+ I++ A+
Sbjct: 212 YAKIVELAK 220
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 117 bits (293), Expect = 7e-33
Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
++ + N+K + + +V V +VV+P V L ++ S+ V
Sbjct: 4 KEPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVE--IPV 61
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AQ+ K G+ TG + E + +L HSE R+ + + + A GL
Sbjct: 62 FAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRM----ILADLEAAIRRAEEVGL 117
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
+ C + V++ + +A EP IGTG + A+
Sbjct: 118 MTMVCSNNPAV------------------SAAVAALNPDYVAVEPPELIGTGIPVSKAKP 159
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEF 241
+ + + ++ +++ G ++ + A + G L+ K +
Sbjct: 160 EVITNTVELV------KKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP 213
Query: 242 IDIIKS 247
I
Sbjct: 214 EKAIWD 219
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 26.2 bits (56), Expect = 4.1
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 9 GNWKCNGTPEEVKKIVSVLNEGQVP 33
G W+ T + + + +G+ P
Sbjct: 230 GFWQPMDTLRDKVYLEGLWEKGKAP 254
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,920
Number of extensions: 42978
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 14
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)