BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025541
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 67.4 bits (163), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150
+C+VCLA+ + ++ + +P CGH FH +C+D WL +H+TCPLCRL+++
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 53.9 bits (128), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELS 160
C+VCL D++ D+L P C HAFH C+ WL CPLC + +L A+ S S
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPSS 73
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
T C VC+ D+++ L+ +P C H FH C+D WL + TCP+CR
Sbjct: 24 TLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151
+C VC DY + ++Q+P C H FH CI WL H +CP+CR SL
Sbjct: 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSL 149
+C++CL+ + + ++++P C H FH C+D WL T+ CP+CR+ +
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 82 KELREMLPIVIYKESFSI--RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH 139
KE + LP ++ E ++ C +C ++Y D ++P C H FH C+ WL
Sbjct: 19 KESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKS 77
Query: 140 TTCPLCRLSLLAP 152
TCP+CR P
Sbjct: 78 GTCPVCRCMFPPP 90
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASS 157
+C +C+ + + I C H+F CID W H CP+CRL + ++S
Sbjct: 17 ECCICM-----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG 66
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
C C A+ + ED + C H+FH C+ W+ + CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 69 NVDEISRAELGLKK---ELREMLPIVIYKESFSIRDTQCSVC---LADYQAEDKLQQIPA 122
+VD S G K E+++ + ++ ++ I C++C + D E + Q A
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKWNAVALW--AWDIVVDNCAICRNHIXDLCIECQANQASA 61
Query: 123 -----------CGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 62 TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 123 CGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 122 ACGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 83 VCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 69 NVDEISRAELGLKK---ELREMLPIVIYKESFSIRDTQCSVC---LADYQAEDKLQQIPA 122
+VD S G K E+++ + ++ ++ I C++C + D E + Q A
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKWNAVALW--AWDIVVDNCAICRNHIMDLCIECQANQASA 61
Query: 123 -----------CGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 62 TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 69 NVDEISRAELGLKK---ELREMLPIVIYKESFSIRDTQCSVC---LADYQAEDKLQQIPA 122
+VD S G K E+++ + ++ ++ I C++C + D E + Q A
Sbjct: 6 DVDTPSGTNSGAGKKRFEVKKWNAVALW--AWDIVVDNCAICRNHIMDLCIECQANQASA 63
Query: 123 -----------CGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 64 TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 122 ACGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 56 VCNHAFHFHCISRWLKTRQVCPL 78
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
+ QC +C ++Y E C H+F CI+ W+ CP+CR
Sbjct: 53 ELQCIIC-SEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 123 CGHAFHMDCIDHWLTTHTTCPL 144
C HAFH CI WL T CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRL---SLLAPAKASSEL 159
+C +CL D + +P C HAF CI W+ + TCPLC++ S++ ++ SE
Sbjct: 7 RCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEF 63
Query: 160 SD 161
D
Sbjct: 64 GD 65
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
+ QC +C ++Y E C H+F CI+ W+ CP+CR
Sbjct: 53 ELQCIIC-SEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
+ QC +C ++Y E C H+F CI+ W+ CP+CR
Sbjct: 64 ELQCIIC-SEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 105
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLC 145
+ C +CL D + + CGH H C + L CPLC
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLC 145
++ C +CL D + + CGH H C + L CPLC
Sbjct: 2 NVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 104 CSVCLADYQ---AEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
C +C+ Y +L CGH F C+ L TCP CR
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.0 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 104 CSVCLADYQ---AEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
C +C+ Y +L CGH F C+ L TCP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 31.2 bits (69), Expect = 0.53, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 104 CSVCLADYQ---AEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
C +C+ Y +L CGH F C+ L TCP CR
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSD 161
+C +C + IP C H + CI +L+ T CP C +++ P ++ + D
Sbjct: 24 RCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILD 79
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 56 WSSLRMRTSLHTNNVDEISRAELGLKKELREMLPIVIYKESFSIRDTQCSVCLADYQ--- 112
+ S +R SL N R ++ K+ PI I + S C +C+ Y
Sbjct: 36 FCSQCLRDSLKNANTCPTCRKKINHKR----YHPIYIGSGTVS-----CPICMDGYSEIV 86
Query: 113 AEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
+L CGH F C+ L TCP CR
Sbjct: 87 QNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 104 CSVCLADYQ---AEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCR 146
C +C+ Y +L CGH F C+ L TCP CR
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW---LTTHTTCPLC 145
+ CSVCL +Y E I CGH F CI W L CP+C
Sbjct: 15 EASCSVCL-EYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCR 146
C +C + DK +I CGH C+ W + CP CR
Sbjct: 337 CKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCR 146
C +C + DK +I CGH C+ W + CP CR
Sbjct: 337 CKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCR 146
C +C + DK +I CGH C+ W + CP CR
Sbjct: 335 CKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCR 146
C +C + DK +I CGH C+ W + CP CR
Sbjct: 335 CKICAEN----DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 108 LADYQAEDKLQQIPACGHAFHMDCID 133
+ Q + ++Q +P CGHA H D D
Sbjct: 262 IGQMQGKFQMQVLPQCGHAVHEDAPD 287
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH-TTCPLCRLSL 149
C +C + DK +I CGH C+ W + CP CR +
Sbjct: 29 CKICAEN----DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 104 CSVCLADYQAEDKLQQIPACGHAFHMDCIDHWL-TTHTTCPLCR 146
C +C + DK +I CGH C+ W + CP CR
Sbjct: 341 CKICAEN----DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 108 LADYQAEDKLQQIPACGHAFHMDCID 133
+ Q + ++Q +P CGHA H D D
Sbjct: 256 IGQMQGKFQMQVLPQCGHAVHEDAPD 281
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTT---CPLC 145
+C +C+ + E ++ CGH C++ L + CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,047,937
Number of Sequences: 62578
Number of extensions: 208367
Number of successful extensions: 392
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 48
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)