Query 025541
Match_columns 251
No_of_seqs 242 out of 2145
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.5E-17 5E-22 121.0 6.9 78 73-151 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.7E-16 5.7E-21 111.1 4.6 67 85-152 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1E-15 3.5E-20 100.4 4.1 51 100-150 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 2.3E-15 7.8E-20 104.8 5.7 55 100-155 14-68 (74)
5 2ect_A Ring finger protein 126 99.6 2.3E-15 7.8E-20 105.9 5.7 57 98-155 12-68 (78)
6 2kiz_A E3 ubiquitin-protein li 99.6 3.2E-15 1.1E-19 102.6 6.2 54 99-153 12-65 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 4.6E-15 1.6E-19 105.4 4.3 53 99-151 13-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 3.7E-14 1.3E-18 92.8 4.4 50 100-150 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 8E-14 2.7E-18 105.0 6.1 52 100-152 24-95 (114)
10 3dpl_R Ring-box protein 1; ubi 99.4 5.7E-14 2E-18 104.7 4.7 52 98-150 34-100 (106)
11 3ng2_A RNF4, snurf, ring finge 99.4 6.9E-14 2.3E-18 96.3 4.4 54 99-153 8-65 (71)
12 2ea6_A Ring finger protein 4; 99.4 9E-14 3.1E-18 95.0 4.0 51 99-150 13-67 (69)
13 2xeu_A Ring finger protein 4; 99.4 8.6E-14 2.9E-18 93.7 3.4 52 100-152 2-57 (64)
14 2d8s_A Cellular modulator of i 99.4 4.7E-13 1.6E-17 94.7 5.2 55 99-155 13-74 (80)
15 1chc_A Equine herpes virus-1 r 99.4 3.9E-13 1.3E-17 91.8 4.0 49 100-151 4-52 (68)
16 2ecn_A Ring finger protein 141 99.4 1.9E-13 6.7E-18 93.9 2.5 50 100-154 14-63 (70)
17 2djb_A Polycomb group ring fin 99.4 7.8E-13 2.7E-17 91.5 5.5 53 100-155 14-66 (72)
18 2d8t_A Dactylidin, ring finger 99.3 3.3E-13 1.1E-17 93.1 3.0 50 98-151 12-61 (71)
19 4a0k_B E3 ubiquitin-protein li 99.3 1.3E-13 4.5E-18 104.3 0.5 53 98-151 45-112 (117)
20 2ct2_A Tripartite motif protei 99.3 1.5E-12 5E-17 93.3 5.5 53 99-152 13-69 (88)
21 2csy_A Zinc finger protein 183 99.3 2.8E-12 9.5E-17 90.7 4.8 48 99-150 13-60 (81)
22 2yur_A Retinoblastoma-binding 99.3 4.4E-12 1.5E-16 88.2 5.6 52 100-154 14-67 (74)
23 2ecy_A TNF receptor-associated 99.3 4.1E-12 1.4E-16 86.2 5.0 49 100-152 14-63 (66)
24 4ayc_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 101.5 3.0 47 101-151 53-99 (138)
25 2ysl_A Tripartite motif-contai 99.3 5.4E-12 1.9E-16 87.2 5.0 49 100-152 19-70 (73)
26 2ct0_A Non-SMC element 1 homol 99.2 7E-12 2.4E-16 87.1 5.1 51 100-153 14-66 (74)
27 3lrq_A E3 ubiquitin-protein li 99.2 2.7E-12 9.3E-17 94.6 3.2 51 101-154 22-73 (100)
28 1t1h_A Gspef-atpub14, armadill 99.2 1.2E-11 4E-16 86.7 5.1 50 100-153 7-57 (78)
29 1g25_A CDK-activating kinase a 99.2 9.6E-12 3.3E-16 84.1 4.4 51 101-152 3-56 (65)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 7.5E-12 2.6E-16 96.1 3.8 53 100-153 6-62 (133)
31 2ecw_A Tripartite motif-contai 99.2 1.5E-11 5.3E-16 87.1 4.6 49 100-152 18-72 (85)
32 2y43_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 91.0 3.8 49 101-152 22-70 (99)
33 2ecv_A Tripartite motif-contai 99.2 2.5E-11 8.5E-16 86.0 5.1 49 100-152 18-72 (85)
34 2ckl_A Polycomb group ring fin 99.2 1.8E-11 6.3E-16 91.2 4.6 50 100-152 14-63 (108)
35 2ysj_A Tripartite motif-contai 99.2 2.5E-11 8.5E-16 81.5 4.7 42 100-145 19-63 (63)
36 2egp_A Tripartite motif-contai 99.1 7.3E-12 2.5E-16 87.8 1.6 49 100-152 11-66 (79)
37 3fl2_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 91.8 4.7 47 101-151 52-99 (124)
38 2ecj_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 79.3 3.6 42 100-145 14-58 (58)
39 3ztg_A E3 ubiquitin-protein li 99.1 6.3E-11 2.1E-15 85.6 5.3 50 99-151 11-62 (92)
40 2ckl_B Ubiquitin ligase protei 99.1 3.8E-11 1.3E-15 96.2 3.8 49 100-151 53-102 (165)
41 4ap4_A E3 ubiquitin ligase RNF 99.1 5.2E-11 1.8E-15 91.3 3.6 53 99-152 70-126 (133)
42 1jm7_A BRCA1, breast cancer ty 99.1 7.8E-11 2.7E-15 88.0 4.4 49 101-153 21-72 (112)
43 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.8E-15 92.2 3.9 48 101-152 78-126 (150)
44 1e4u_A Transcriptional repress 99.0 2.1E-10 7.2E-15 80.6 4.5 55 99-154 9-65 (78)
45 3l11_A E3 ubiquitin-protein li 99.0 4.5E-11 1.5E-15 90.0 0.7 48 100-151 14-62 (115)
46 3hct_A TNF receptor-associated 99.0 1.4E-10 4.6E-15 87.9 3.3 49 100-152 17-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 99.0 1.7E-10 6E-15 86.9 3.0 49 101-153 23-72 (116)
48 2kr4_A Ubiquitin conjugation f 99.0 2.6E-10 9E-15 81.4 3.7 49 100-152 13-61 (85)
49 2vje_B MDM4 protein; proto-onc 99.0 2.1E-10 7.1E-15 77.2 2.9 50 99-150 5-55 (63)
50 2vje_A E3 ubiquitin-protein li 99.0 2.5E-10 8.5E-15 77.1 3.0 48 100-150 7-56 (64)
51 2kre_A Ubiquitin conjugation f 99.0 3.4E-10 1.2E-14 83.3 3.6 50 100-153 28-77 (100)
52 1bor_A Transcription factor PM 98.9 2.7E-10 9.3E-15 74.8 2.5 48 99-153 4-51 (56)
53 1wgm_A Ubiquitin conjugation f 98.9 7.3E-10 2.5E-14 81.2 5.1 50 100-153 21-71 (98)
54 3knv_A TNF receptor-associated 98.9 3.8E-10 1.3E-14 88.2 2.4 49 100-152 30-79 (141)
55 2y1n_A E3 ubiquitin-protein li 98.9 7.8E-10 2.7E-14 99.4 4.4 48 101-152 332-380 (389)
56 1jm7_B BARD1, BRCA1-associated 98.9 5.2E-10 1.8E-14 84.5 2.4 47 101-153 22-69 (117)
57 2yu4_A E3 SUMO-protein ligase 98.8 2.6E-09 8.8E-14 77.6 4.3 49 100-151 6-63 (94)
58 3k1l_B Fancl; UBC, ring, RWD, 98.8 8.7E-10 3E-14 96.8 1.9 52 99-150 306-372 (381)
59 4ic3_A E3 ubiquitin-protein li 98.8 8.9E-10 3.1E-14 76.5 1.4 43 101-151 24-67 (74)
60 2c2l_A CHIP, carboxy terminus 98.7 6.3E-09 2.2E-13 89.3 3.7 49 100-152 207-256 (281)
61 3hcs_A TNF receptor-associated 98.7 7.1E-09 2.4E-13 83.2 3.3 49 100-152 17-66 (170)
62 1wim_A KIAA0161 protein; ring 98.7 9.9E-09 3.4E-13 74.3 3.4 48 100-148 4-61 (94)
63 2ea5_A Cell growth regulator w 98.6 2E-08 7E-13 68.4 4.0 48 98-153 12-60 (68)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.6 1.8E-08 6.1E-13 67.0 3.5 47 100-150 5-58 (60)
65 2ecg_A Baculoviral IAP repeat- 98.6 9.7E-09 3.3E-13 71.3 1.8 44 101-152 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.6 1.9E-08 6.4E-13 81.4 3.5 50 99-152 104-154 (179)
67 2yho_A E3 ubiquitin-protein li 98.5 2E-08 6.7E-13 70.6 1.2 44 101-152 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4.2E-12 80.5 3.4 51 100-153 180-234 (267)
69 2bay_A PRE-mRNA splicing facto 98.4 1E-07 3.5E-12 63.5 1.9 48 102-152 4-51 (61)
70 3vk6_A E3 ubiquitin-protein li 98.4 2.4E-07 8.3E-12 66.9 3.8 46 103-151 3-49 (101)
71 3t6p_A Baculoviral IAP repeat- 98.3 9.3E-08 3.2E-12 85.1 1.5 44 100-151 294-338 (345)
72 3nw0_A Non-structural maintena 98.0 4E-06 1.4E-10 70.8 5.3 50 101-153 180-231 (238)
73 2ko5_A Ring finger protein Z; 96.4 0.0011 3.8E-08 47.0 1.8 52 98-155 25-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.015 5.1E-07 41.7 3.0 34 101-135 3-36 (101)
75 2lri_C Autoimmune regulator; Z 94.1 0.049 1.7E-06 36.2 3.6 46 100-149 11-60 (66)
76 1we9_A PHD finger family prote 91.0 0.065 2.2E-06 35.2 0.9 50 99-148 4-58 (64)
77 1wil_A KIAA1045 protein; ring 91.0 0.21 7.3E-06 34.6 3.5 34 100-135 14-47 (89)
78 3lqh_A Histone-lysine N-methyl 89.2 0.17 5.9E-06 40.5 2.2 48 102-149 3-64 (183)
79 2l5u_A Chromodomain-helicase-D 88.9 0.26 8.9E-06 32.0 2.6 45 99-147 9-57 (61)
80 2k16_A Transcription initiatio 88.1 0.19 6.4E-06 34.0 1.5 52 98-150 15-70 (75)
81 1mm2_A MI2-beta; PHD, zinc fin 87.2 0.2 6.7E-06 32.6 1.1 47 99-149 7-57 (61)
82 1f62_A Transcription factor WS 85.8 0.33 1.1E-05 30.1 1.6 44 103-147 2-49 (51)
83 3u5n_A E3 ubiquitin-protein li 85.8 0.22 7.6E-06 40.5 1.0 48 99-150 5-56 (207)
84 3o36_A Transcription intermedi 85.1 0.25 8.4E-06 39.4 0.9 47 100-150 3-53 (184)
85 2yql_A PHD finger protein 21A; 84.7 0.15 5.2E-06 32.5 -0.4 46 98-147 6-55 (56)
86 2ysm_A Myeloid/lymphoid or mix 84.1 0.34 1.2E-05 35.3 1.2 47 99-146 5-55 (111)
87 2kgg_A Histone demethylase jar 83.4 1.1 3.9E-05 27.8 3.4 44 103-146 4-52 (52)
88 2jwa_A Receptor tyrosine-prote 83.4 2.1 7.2E-05 25.8 4.3 29 24-53 11-39 (44)
89 2vpb_A Hpygo1, pygopus homolog 83.2 0.9 3.1E-05 29.9 2.9 47 100-146 7-64 (65)
90 1xwh_A Autoimmune regulator; P 81.8 0.41 1.4E-05 31.5 0.8 46 99-148 6-55 (66)
91 2puy_A PHD finger protein 21A; 81.1 0.17 5.6E-06 32.8 -1.3 46 100-149 4-53 (60)
92 1weo_A Cellulose synthase, cat 79.5 3.7 0.00013 28.7 5.0 53 100-152 15-71 (93)
93 2lbm_A Transcriptional regulat 79.0 2.7 9.1E-05 32.1 4.7 46 98-147 60-116 (142)
94 3v43_A Histone acetyltransfera 78.6 0.6 2.1E-05 34.1 0.9 45 103-147 63-111 (112)
95 1wep_A PHF8; structural genomi 77.8 1.6 5.3E-05 29.7 2.8 48 101-149 12-64 (79)
96 2l2t_A Receptor tyrosine-prote 77.7 3.9 0.00013 24.6 4.2 27 28-54 13-39 (44)
97 2ku3_A Bromodomain-containing 77.7 1 3.4E-05 30.2 1.7 50 98-147 13-65 (71)
98 2e6r_A Jumonji/ARID domain-con 77.2 0.35 1.2E-05 34.2 -0.7 48 100-148 15-66 (92)
99 2lv9_A Histone-lysine N-methyl 76.9 0.85 2.9E-05 32.5 1.2 44 102-147 29-75 (98)
100 3ql9_A Transcriptional regulat 76.8 3.7 0.00013 30.8 4.8 47 97-147 53-110 (129)
101 2ks1_B Epidermal growth factor 76.8 3.2 0.00011 25.0 3.6 23 31-53 17-39 (44)
102 1fp0_A KAP-1 corepressor; PHD 76.6 1.5 5.2E-05 30.6 2.5 47 98-148 22-72 (88)
103 2l43_A N-teminal domain from h 74.8 0.96 3.3E-05 31.6 1.0 50 100-149 24-76 (88)
104 1wev_A Riken cDNA 1110020M19; 74.8 0.55 1.9E-05 32.8 -0.2 50 101-150 16-74 (88)
105 2cs3_A Protein C14ORF4, MY039 74.7 4.3 0.00015 27.8 4.2 38 101-138 15-52 (93)
106 1wem_A Death associated transc 74.4 1.2 4.2E-05 29.9 1.5 46 101-148 16-70 (76)
107 2ri7_A Nucleosome-remodeling f 73.4 0.89 3.1E-05 35.6 0.7 48 100-148 7-59 (174)
108 3m62_A Ubiquitin conjugation f 73.3 2.5 8.6E-05 42.0 3.9 50 100-153 890-940 (968)
109 3v43_A Histone acetyltransfera 72.9 4.5 0.00015 29.3 4.4 46 101-146 5-62 (112)
110 2xb1_A Pygopus homolog 2, B-ce 72.2 2 6.7E-05 31.0 2.2 49 102-150 4-63 (105)
111 1y02_A CARP2, FYVE-ring finger 72.0 0.59 2E-05 34.7 -0.7 49 101-149 19-67 (120)
112 2ro1_A Transcription intermedi 71.7 0.95 3.3E-05 36.2 0.4 44 101-148 2-49 (189)
113 1wee_A PHD finger family prote 71.3 0.83 2.8E-05 30.5 0.0 48 100-148 15-66 (72)
114 2yw8_A RUN and FYVE domain-con 70.3 3.2 0.00011 28.3 2.9 35 101-135 19-53 (82)
115 1vfy_A Phosphatidylinositol-3- 70.3 3.2 0.00011 27.7 2.8 33 102-134 12-44 (73)
116 1zbd_B Rabphilin-3A; G protein 69.5 2.8 9.6E-05 31.6 2.6 49 99-147 53-106 (134)
117 1zfo_A LAsp-1; LIM domain, zin 69.4 1.7 5.8E-05 23.9 1.1 28 102-132 4-31 (31)
118 3shb_A E3 ubiquitin-protein li 69.1 0.81 2.8E-05 31.2 -0.4 44 103-147 28-76 (77)
119 1joc_A EEA1, early endosomal a 68.8 3 0.0001 31.0 2.6 34 102-135 70-103 (125)
120 2yt5_A Metal-response element- 68.2 3 0.0001 27.0 2.3 50 99-148 4-61 (66)
121 1iij_A ERBB-2 receptor protein 67.7 2.7 9.3E-05 24.0 1.7 27 25-52 8-34 (35)
122 1z2q_A LM5-1; membrane protein 67.5 4.3 0.00015 27.8 3.1 35 101-135 21-55 (84)
123 3t7l_A Zinc finger FYVE domain 67.5 3.7 0.00013 28.6 2.8 49 101-149 20-74 (90)
124 2kwj_A Zinc finger protein DPF 67.3 4 0.00014 29.7 3.0 45 102-146 2-59 (114)
125 1dvp_A HRS, hepatocyte growth 66.3 2.9 9.9E-05 34.1 2.3 36 100-135 160-195 (220)
126 1wfk_A Zinc finger, FYVE domai 66.0 5.5 0.00019 27.6 3.4 49 101-149 9-64 (88)
127 2e6s_A E3 ubiquitin-protein li 65.7 1.4 4.7E-05 30.0 0.2 46 101-147 26-76 (77)
128 2k21_A Potassium voltage-gated 64.9 8.9 0.00031 28.5 4.4 27 26-52 53-79 (138)
129 3zyq_A Hepatocyte growth facto 64.3 3.5 0.00012 33.8 2.4 36 100-135 163-198 (226)
130 4gne_A Histone-lysine N-methyl 63.7 5.5 0.00019 28.8 3.1 47 98-150 12-64 (107)
131 1x4u_A Zinc finger, FYVE domai 63.6 5.4 0.00018 27.3 2.9 34 101-134 14-47 (84)
132 1wew_A DNA-binding family prot 63.5 2.6 8.7E-05 28.5 1.2 48 101-149 16-73 (78)
133 1wen_A Inhibitor of growth fam 63.2 5 0.00017 26.6 2.6 45 100-149 15-66 (71)
134 3asl_A E3 ubiquitin-protein li 63.1 1.7 5.8E-05 28.9 0.2 44 103-147 20-68 (70)
135 3o70_A PHD finger protein 13; 62.2 1.9 6.4E-05 28.5 0.3 46 100-147 18-66 (68)
136 3i2d_A E3 SUMO-protein ligase 60.5 7.1 0.00024 34.5 3.8 48 101-152 249-301 (371)
137 2k1k_A Ephrin type-A receptor 60.2 14 0.00047 21.4 3.8 18 31-48 17-34 (38)
138 3ask_A E3 ubiquitin-protein li 59.9 2.4 8.3E-05 34.9 0.7 45 102-147 175-224 (226)
139 4fo9_A E3 SUMO-protein ligase 59.1 7.8 0.00027 34.1 3.8 48 101-152 215-267 (360)
140 2o35_A Hypothetical protein DU 58.0 3.8 0.00013 29.1 1.3 11 127-137 43-53 (105)
141 3fyb_A Protein of unknown func 57.8 3.8 0.00013 29.1 1.3 11 127-137 42-52 (104)
142 3mjh_B Early endosome antigen 57.8 2.6 8.9E-05 23.9 0.4 14 101-114 5-18 (34)
143 2klu_A T-cell surface glycopro 55.8 12 0.00039 24.6 3.2 21 30-50 12-32 (70)
144 1z60_A TFIIH basal transcripti 55.6 5.3 0.00018 25.6 1.6 43 102-145 16-58 (59)
145 2ysm_A Myeloid/lymphoid or mix 54.5 2.1 7.1E-05 30.9 -0.5 45 103-148 56-104 (111)
146 2zet_C Melanophilin; complex, 54.1 7.6 0.00026 29.9 2.6 48 99-147 66-116 (153)
147 1weu_A Inhibitor of growth fam 52.7 7.8 0.00027 27.1 2.3 44 101-149 36-86 (91)
148 3s8f_C Cytochrome C oxidase po 52.7 26 0.00088 19.8 4.0 23 26-48 9-31 (34)
149 3mpx_A FYVE, rhogef and PH dom 52.3 3 0.0001 37.3 0.0 49 101-149 375-430 (434)
150 3c6w_A P28ING5, inhibitor of g 51.7 5.3 0.00018 25.4 1.2 42 101-147 9-57 (59)
151 2vnf_A ING 4, P29ING4, inhibit 50.9 5.1 0.00018 25.6 1.0 42 101-147 10-58 (60)
152 3a1b_A DNA (cytosine-5)-methyl 49.4 16 0.00054 28.3 3.7 47 96-146 74-132 (159)
153 3f6q_B LIM and senescent cell 48.7 10 0.00036 24.2 2.3 42 101-152 11-52 (72)
154 1wyh_A SLIM 2, skeletal muscle 47.5 15 0.0005 23.6 2.9 41 101-151 5-45 (72)
155 2cu8_A Cysteine-rich protein 2 47.3 8.9 0.0003 25.1 1.8 40 101-151 9-48 (76)
156 1x4k_A Skeletal muscle LIM-pro 45.6 16 0.00054 23.4 2.9 41 102-152 6-46 (72)
157 1x61_A Thyroid receptor intera 45.4 14 0.00048 23.7 2.6 39 102-150 6-44 (72)
158 2co8_A NEDD9 interacting prote 45.4 23 0.00078 23.6 3.7 42 100-152 14-55 (82)
159 1x4l_A Skeletal muscle LIM-pro 45.2 15 0.0005 23.7 2.6 40 101-150 5-46 (72)
160 2rsd_A E3 SUMO-protein ligase 44.9 2.8 9.5E-05 27.5 -1.1 45 102-147 11-64 (68)
161 2gmg_A Hypothetical protein PF 44.7 5.2 0.00018 28.8 0.3 26 122-152 72-97 (105)
162 1g47_A Pinch protein; LIM doma 44.4 14 0.00047 24.1 2.4 43 100-152 10-52 (77)
163 2jne_A Hypothetical protein YF 44.3 7.9 0.00027 27.4 1.1 40 102-150 33-72 (101)
164 2dj7_A Actin-binding LIM prote 44.1 9.7 0.00033 25.4 1.6 40 100-150 14-53 (80)
165 2d8v_A Zinc finger FYVE domain 44.0 16 0.00055 23.9 2.5 31 100-135 7-38 (67)
166 1x63_A Skeletal muscle LIM-pro 43.6 17 0.00057 24.0 2.8 42 101-152 15-56 (82)
167 1afo_A Glycophorin A; integral 43.4 47 0.0016 19.2 4.4 17 23-39 11-27 (40)
168 2kwj_A Zinc finger protein DPF 43.3 3.2 0.00011 30.2 -1.1 45 103-148 60-108 (114)
169 1iml_A CRIP, cysteine rich int 43.3 10 0.00036 24.7 1.6 25 104-131 3-27 (76)
170 2pv0_B DNA (cytosine-5)-methyl 41.6 19 0.00065 32.0 3.5 47 97-147 89-147 (386)
171 2jmo_A Parkin; IBR, E3 ligase, 38.8 2.6 9.1E-05 28.6 -2.0 19 122-142 55-73 (80)
172 2rdd_B UPF0092 membrane protei 38.7 34 0.0012 19.4 3.2 8 43-50 15-22 (37)
173 3kqi_A GRC5, PHD finger protei 38.0 8.4 0.00029 25.6 0.5 45 103-148 12-61 (75)
174 2d8y_A Eplin protein; LIM doma 36.6 25 0.00084 23.8 2.8 41 101-152 15-55 (91)
175 1x68_A FHL5 protein; four-and- 36.5 22 0.00074 23.1 2.4 39 102-150 6-46 (76)
176 2l3k_A Rhombotin-2, linker, LI 35.8 14 0.00047 26.8 1.4 38 103-150 10-47 (123)
177 2knc_A Integrin alpha-IIB; tra 35.7 64 0.0022 20.1 4.3 26 25-50 10-35 (54)
178 2cor_A Pinch protein; LIM doma 35.4 32 0.0011 22.6 3.2 39 101-151 15-53 (79)
179 1x64_A Alpha-actinin-2 associa 34.7 39 0.0013 22.6 3.6 41 100-152 24-64 (89)
180 2l4z_A DNA endonuclease RBBP8, 34.5 19 0.00065 26.2 2.0 39 101-150 61-99 (123)
181 2jrp_A Putative cytoplasmic pr 34.3 19 0.00064 24.6 1.7 15 102-116 3-17 (81)
182 3o7a_A PHD finger protein 13 v 33.5 7.6 0.00026 23.8 -0.3 41 106-147 8-51 (52)
183 1nyp_A Pinch protein; LIM doma 32.8 27 0.00091 21.9 2.3 38 102-151 6-43 (66)
184 2jvx_A NF-kappa-B essential mo 32.6 9.7 0.00033 20.5 0.1 12 140-151 4-15 (28)
185 2d8x_A Protein pinch; LIM doma 32.4 30 0.001 21.9 2.6 40 101-152 5-44 (70)
186 2ct7_A Ring finger protein 31; 32.3 3.7 0.00013 28.2 -2.1 18 118-135 44-61 (86)
187 1x62_A C-terminal LIM domain p 32.0 20 0.00069 23.5 1.7 38 101-150 15-52 (79)
188 3kv5_D JMJC domain-containing 31.7 12 0.0004 34.4 0.5 47 101-148 37-88 (488)
189 1wd2_A Ariadne-1 protein homol 31.2 6.7 0.00023 25.1 -0.9 35 103-137 8-46 (60)
190 3arc_I Photosystem II reaction 30.1 72 0.0025 18.2 3.4 6 30-35 9-14 (38)
191 2kpi_A Uncharacterized protein 30.1 20 0.00069 22.5 1.3 14 101-114 10-23 (56)
192 2cur_A Skeletal muscle LIM-pro 29.1 32 0.0011 21.7 2.2 38 101-150 5-42 (69)
193 1rut_X Flinc4, fusion protein 28.8 31 0.0011 26.9 2.5 38 103-150 71-108 (188)
194 2dar_A PDZ and LIM domain prot 28.6 26 0.0009 23.6 1.8 39 101-151 25-63 (90)
195 1v6g_A Actin binding LIM prote 28.3 29 0.00098 22.8 1.9 38 102-151 16-53 (81)
196 2csz_A Synaptotagmin-like prot 28.3 25 0.00085 23.7 1.5 35 98-132 22-57 (76)
197 2ehe_A Four and A half LIM dom 27.7 34 0.0012 22.4 2.2 39 102-150 16-54 (82)
198 2d8z_A Four and A half LIM dom 27.0 31 0.0011 21.8 1.9 39 101-151 5-43 (70)
199 2rgt_A Fusion of LIM/homeobox 27.0 34 0.0012 26.1 2.4 39 103-151 67-105 (169)
200 2das_A Zinc finger MYM-type pr 26.8 59 0.002 20.8 3.0 35 101-135 20-55 (62)
201 2l9u_A Receptor tyrosine-prote 26.8 91 0.0031 17.5 4.4 18 29-46 11-28 (40)
202 1m3v_A FLIN4, fusion of the LI 26.0 50 0.0017 23.6 3.1 50 101-152 32-82 (122)
203 2fiy_A Protein FDHE homolog; F 25.0 9.9 0.00034 32.7 -1.2 49 99-148 180-231 (309)
204 2egq_A FHL1 protein; LIM domai 25.0 42 0.0014 21.6 2.3 40 102-151 16-58 (77)
205 2g6q_A Inhibitor of growth pro 24.6 13 0.00043 23.9 -0.5 42 101-147 11-59 (62)
206 2klu_A T-cell surface glycopro 22.9 72 0.0025 20.8 2.9 26 27-52 12-37 (70)
207 2a20_A Regulating synaptic mem 22.8 66 0.0023 20.5 2.6 37 98-135 6-43 (62)
208 2pk7_A Uncharacterized protein 22.5 19 0.00066 23.7 0.1 18 134-151 3-20 (69)
209 2iyb_E Testin, TESS, TES; LIM 22.5 57 0.0019 20.3 2.5 39 103-151 4-44 (65)
210 2xjy_A Rhombotin-2; oncoprotei 22.3 56 0.0019 23.5 2.7 50 100-151 28-78 (131)
211 1wig_A KIAA1808 protein; LIM d 21.8 67 0.0023 20.6 2.8 37 102-150 6-42 (73)
212 1loi_A Cyclic 3',5'-AMP specif 21.5 5.3 0.00018 20.4 -2.1 12 126-137 6-17 (26)
213 2lcq_A Putative toxin VAPC6; P 20.7 25 0.00085 26.9 0.4 22 122-149 137-158 (165)
214 1j2o_A FLIN2, fusion of rhombo 20.5 49 0.0017 23.4 2.0 37 103-150 5-41 (114)
215 2jtn_A LIM domain-binding prot 20.1 35 0.0012 26.4 1.2 46 100-151 86-131 (182)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=121.02 Aligned_cols=78 Identities=29% Similarity=0.640 Sum_probs=67.5
Q ss_pred hhhhhcCCCHHHHhhCCceeeccCC--CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 73 ISRAELGLKKELREMLPIVIYKESF--SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 73 ~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
......+++++.++.||.+.+.... ...+..|+||++.|..+..++.++ |||.||..||..|+..+.+||+||..+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3345668999999999999887654 345678999999999988888998 9999999999999999999999999886
Q ss_pred C
Q 025541 151 A 151 (251)
Q Consensus 151 ~ 151 (251)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=111.05 Aligned_cols=67 Identities=33% Similarity=0.833 Sum_probs=56.4
Q ss_pred HhhCCceeeccCC-CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 85 REMLPIVIYKESF-SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 85 ~~~lp~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
++.||...+.... ..++..|+||++.|..+..++.++ |+|.||..||.+|+..+.+||+||+.+.+.
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3467777766543 346678999999999988889998 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=1e-15 Score=100.42 Aligned_cols=51 Identities=45% Similarity=1.206 Sum_probs=46.0
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
++..|+||++.|..++.+..++.|||.||..||.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456899999999988888888679999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=104.85 Aligned_cols=55 Identities=40% Similarity=0.957 Sum_probs=49.2
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKA 155 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 155 (251)
.+..|+||++.|..+..+.+++ |+|.||..||.+|+..+.+||+||..+......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 4678999999999988888888 999999999999999999999999998765543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.3e-15 Score=105.92 Aligned_cols=57 Identities=40% Similarity=0.910 Sum_probs=50.2
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCCCC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKA 155 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 155 (251)
...+..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 345678999999999888888898 999999999999999999999999999775544
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=102.65 Aligned_cols=54 Identities=33% Similarity=0.947 Sum_probs=48.1
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
..+..|+||++.|..+..++.++ |||.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 35678999999998888888898 9999999999999999999999999987643
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=105.43 Aligned_cols=53 Identities=26% Similarity=0.741 Sum_probs=43.3
Q ss_pred CCccccccccccccc-----------CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 99 IRDTQCSVCLADYQA-----------EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.++..|+||++.|.. ++.+++++.|+|.||..||.+||..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356779999888854 34455665699999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.46 E-value=3.7e-14 Score=92.79 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=42.9
Q ss_pred CcccccccccccccC-CceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAE-DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
.+..|+||++.|..+ ..+..++ |+|.||..||.+|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999654 3566776 9999999999999999999999998874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=8e-14 Score=105.05 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=42.0
Q ss_pred CcccccccccccccCC---------------ceeEcCCCCCcccHhhHHHHH-----hcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAED---------------KLQQIPACGHAFHMDCIDHWL-----TTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.|..+. .++.++ |+|+||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999996643 334676 99999999999999 4567999999988654
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.44 E-value=5.7e-14 Score=104.70 Aligned_cols=52 Identities=31% Similarity=0.629 Sum_probs=43.5
Q ss_pred CCCcccccccccccccCC---------------ceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 98 SIRDTQCSVCLADYQAED---------------KLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
...++.|+||++.|.... .++.++ |+|.||..||.+||..+.+||+||+.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 345788999999987541 255566 9999999999999999999999999864
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=6.9e-14 Score=96.31 Aligned_cols=54 Identities=26% Similarity=0.660 Sum_probs=45.3
Q ss_pred CCcccccccccccccC----CceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 99 IRDTQCSVCLADYQAE----DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
.++..|+||++.+..+ ..+..++ |||.||..||.+|+..+.+||+||..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3467899999998763 4456776 9999999999999999999999999987543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9e-14 Score=95.05 Aligned_cols=51 Identities=27% Similarity=0.712 Sum_probs=43.2
Q ss_pred CCcccccccccccccC----CceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 99 IRDTQCSVCLADYQAE----DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..+..|+||++.|..+ ..+..++ |||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567899999999764 3346676 9999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=8.6e-14 Score=93.72 Aligned_cols=52 Identities=27% Similarity=0.684 Sum_probs=43.7
Q ss_pred CcccccccccccccC----CceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAE----DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
++..|+||++.+..+ ..+..++ |||.||..||.+|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999998753 3446676 999999999999999999999999988653
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.7e-13 Score=94.68 Aligned_cols=55 Identities=25% Similarity=0.738 Sum_probs=45.4
Q ss_pred CCcccccccccccccCCceeEcCCCC-----CcccHhhHHHHHhcC--CCCccccCcccCCCCC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACG-----HAFHMDCIDHWLTTH--TTCPLCRLSLLAPAKA 155 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~ 155 (251)
.++..|.||++++..+..+ ++| |+ |.||..||.+||..+ .+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 3567899999999877665 687 96 999999999999865 5899999998765543
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=3.9e-13 Score=91.80 Aligned_cols=49 Identities=35% Similarity=0.887 Sum_probs=42.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.+..|+||++.+.. .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 35689999999864 346777 99999999999999999999999998854
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-13 Score=93.91 Aligned_cols=50 Identities=32% Similarity=0.974 Sum_probs=43.4
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAK 154 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 154 (251)
.+..|+||++.+.. ..++ |||.||..||..|+..+..||+||..+.....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 45789999999876 5676 99999999999999999999999999876543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.8e-13 Score=91.50 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=43.7
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKA 155 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 155 (251)
.+..|+||++.+..+ +..++ |||.||..||..|+..+..||+||..+......
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 467899999998763 33346 999999999999999999999999998765443
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.3e-13 Score=93.12 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...+..|+||++.+..+ ..++ |||.||..||..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34567899999998653 5566 99999999999999999999999998854
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.3e-13 Score=104.31 Aligned_cols=53 Identities=30% Similarity=0.603 Sum_probs=2.1
Q ss_pred CCCcccccccccccccCC---------------ceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 98 SIRDTQCSVCLADYQAED---------------KLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
+..++.|+||++.|.... .+..++ |+|.||..||.+||..+.+||+||+++..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC-----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 445788999999997532 222345 99999999999999999999999998643
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=93.30 Aligned_cols=53 Identities=21% Similarity=0.646 Sum_probs=44.5
Q ss_pred CCcccccccccccccCCc-eeEcCCCCCcccHhhHHHHHhcC---CCCccccCcccCC
Q 025541 99 IRDTQCSVCLADYQAEDK-LQQIPACGHAFHMDCIDHWLTTH---TTCPLCRLSLLAP 152 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~ 152 (251)
.....|+||++.|..... .+.++ |||.||..||..|+..+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346789999999987554 66777 99999999999999875 7899999987654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=90.70 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
.....|+||++.|..+ .+++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457899999999653 4576 9999999999999999999999999985
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=88.21 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC--CCCccccCcccCCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH--TTCPLCRLSLLAPAK 154 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 154 (251)
.+..|+||++.|..+ ..++.|||.||..||..|+..+ ..||+||..+...+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 467899999999764 3454599999999999999865 689999998665443
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=86.23 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=40.8
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHh-cCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-THTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+..+.. ++ |||.||..||..|+. .+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45789999999976533 55 999999999999995 567899999998654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=1.5e-12 Score=101.47 Aligned_cols=47 Identities=28% Similarity=0.857 Sum_probs=41.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
+..|+||++.|..+ ..+| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999999753 4566 99999999999999999999999998854
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.4e-12 Score=87.18 Aligned_cols=49 Identities=33% Similarity=0.720 Sum_probs=40.8
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHh---cCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT---THTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+.. ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 46789999999874 34566 999999999999997 456899999988654
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=7e-12 Score=87.05 Aligned_cols=51 Identities=18% Similarity=0.511 Sum_probs=42.0
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC--CCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH--TTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 153 (251)
....|+||++.+..++.. . .|+|.||..||.+||+.+ .+||+||..+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 446899999999865433 2 599999999999999977 89999999886543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=94.57 Aligned_cols=51 Identities=25% Similarity=0.616 Sum_probs=41.7
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC-CCCccccCcccCCCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH-TTCPLCRLSLLAPAK 154 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~~ 154 (251)
+..|+||++.|.. .+..++ |||.||..||..|+..+ ..||+||..+.....
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 4679999999975 232266 99999999999999987 699999999865443
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=1.2e-11 Score=86.70 Aligned_cols=50 Identities=24% Similarity=0.555 Sum_probs=42.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 153 (251)
.+..|+||++.|..+ ..++ |||.||..||..|+.. +.+||+||..+....
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 467899999999764 4456 9999999999999987 789999999987543
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=9.6e-12 Score=84.14 Aligned_cols=51 Identities=25% Similarity=0.592 Sum_probs=40.8
Q ss_pred ccccccccc-ccccCCce-eEcCCCCCcccHhhHHHHHhc-CCCCccccCcccCC
Q 025541 101 DTQCSVCLA-DYQAEDKL-QQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~-~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 152 (251)
+..|+||++ .+..+... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 567999999 77766543 3455 9999999999999764 56799999998654
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=7.5e-12 Score=96.06 Aligned_cols=53 Identities=26% Similarity=0.684 Sum_probs=44.6
Q ss_pred CcccccccccccccC----CceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAE----DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
++..|+||++.|..+ ..+..++ |||.||..||.+|+..+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999764 3446676 9999999999999999999999999886543
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=1.5e-11 Score=87.08 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=41.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc------CCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT------HTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 467899999998764 3576 9999999999999987 67899999988653
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=91.01 Aligned_cols=49 Identities=24% Similarity=0.706 Sum_probs=41.1
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
+..|+||++.|..+ +..++ |||.||..||..|+..+..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 46799999999753 22235 999999999999999999999999988753
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=86.00 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=41.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc------CCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT------HTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 457899999998764 3456 9999999999999987 78899999998754
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.8e-11 Score=91.21 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=42.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.|.. .+..++ |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 35689999999875 333346 999999999999999999999999998764
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=81.49 Aligned_cols=42 Identities=36% Similarity=0.839 Sum_probs=35.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHh---cCCCCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT---THTTCPLC 145 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 145 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+. .+..||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 467899999998754 4566 999999999999998 45689998
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=7.3e-12 Score=87.82 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=41.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-------CCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-------HTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 152 (251)
.+..|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 467899999999764 3466 9999999999999986 56899999998653
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=91.82 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=40.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC-CCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH-TTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 151 (251)
+..|+||++.|..+ ..++ |||.||..||..|+..+ ..||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46799999999853 4566 99999999999999854 489999999976
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.3e-11 Score=79.30 Aligned_cols=42 Identities=38% Similarity=0.953 Sum_probs=35.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHh---cCCCCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT---THTTCPLC 145 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 145 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457899999999865 3466 999999999999954 56789998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.11 E-value=6.3e-11 Score=85.58 Aligned_cols=50 Identities=26% Similarity=0.612 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc--CCCCccccCcccC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT--HTTCPLCRLSLLA 151 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 151 (251)
..+..|+||++.|..+ ..++.|||.||..||..|+.. +..||+||..+..
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 3567899999999764 345449999999999999974 3689999999743
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=3.8e-11 Score=96.17 Aligned_cols=49 Identities=31% Similarity=0.710 Sum_probs=41.2
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 151 (251)
.+..|+||++.|.. .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999975 344446 9999999999999997 7889999999864
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=5.2e-11 Score=91.31 Aligned_cols=53 Identities=26% Similarity=0.676 Sum_probs=43.7
Q ss_pred CCcccccccccccccC----CceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 99 IRDTQCSVCLADYQAE----DKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
.....|+||++.|... .....++ |||.||..||.+|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3467899999998753 2335665 999999999999999999999999988653
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=7.8e-11 Score=88.04 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=40.5
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC---CCCccccCcccCCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH---TTCPLCRLSLLAPA 153 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~~ 153 (251)
...|+||++.+..+ ..++ |||.||..||..|+..+ ..||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 35799999998764 3356 99999999999999865 38999999887654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=92.18 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=40.9
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCC-CCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 152 (251)
...|+||++.|..+ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46799999998754 4466 999999999999998654 899999998765
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.1e-10 Score=80.56 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=41.7
Q ss_pred CCcccccccccccccCCcee-EcCCCCCcccHhhHHHHHh-cCCCCccccCcccCCCC
Q 025541 99 IRDTQCSVCLADYQAEDKLQ-QIPACGHAFHMDCIDHWLT-THTTCPLCRLSLLAPAK 154 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~-~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 154 (251)
.++..|+||++.+...+... -++ |||.||..|+..|+. ....||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 35678999999986543322 234 999999999999875 46789999999876543
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=4.5e-11 Score=90.03 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=40.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 151 (251)
.+..|+||++.|..+ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457899999998754 4566 9999999999999976 6789999999864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.4e-10 Score=87.89 Aligned_cols=49 Identities=31% Similarity=0.661 Sum_probs=41.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCC-CCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+..+. .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 457899999998754 4566 999999999999998754 999999998653
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=1.7e-10 Score=86.90 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=41.3
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccCCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLAPA 153 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 153 (251)
+..|+||++.+..+ ..++ |||.||..||..|+.. +..||+||..+....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 45799999998753 4466 9999999999999986 779999999987644
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.98 E-value=2.6e-10 Score=81.39 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=42.7
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
....|+||++-|..+ .+++ |||.|++.||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 467899999999864 4566 999999999999999889999999988654
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=2.1e-10 Score=77.23 Aligned_cols=50 Identities=18% Similarity=0.425 Sum_probs=39.9
Q ss_pred CCcccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCccc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..+..|.||++..... .+..+| |||. ||..|+..|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456899999986542 122347 9998 999999999988889999999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.97 E-value=2.5e-10 Score=77.10 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=39.5
Q ss_pred CcccccccccccccCCcee-EcCCCCCc-ccHhhHHHHHhcCCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQ-QIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
++..|.||++..... +. .+| |||. |+..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999987543 22 238 9999 899999999998899999999874
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=3.4e-10 Score=83.32 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
....|+||++-|..+ .+++ |||.|++.||..|+..+.+||+||.++....
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 467899999999865 4566 9999999999999998899999999987643
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.7e-10 Score=74.76 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
.+...|+||++.|..+ +.++ |||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3456799999999864 5576 9999999999884 568999999887544
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=7.3e-10 Score=81.22 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=43.1
Q ss_pred CcccccccccccccCCceeEcCCCC-CcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACG-HAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
.+..|+||++-|..+ .+++ || |.|++.||..|+..+.+||+||.++....
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 467899999999865 4566 99 99999999999998899999999987643
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.90 E-value=3.8e-10 Score=88.20 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=40.7
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCC-CCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHT-TCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 152 (251)
.+..|+||++.+..+ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 467899999999765 4466 999999999999998654 899999987543
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=7.8e-10 Score=99.40 Aligned_cols=48 Identities=25% Similarity=0.765 Sum_probs=41.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-cCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-THTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 152 (251)
...|+||++.+.. +..+| |||.||..|+..|+. .+..||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999854 45677 999999999999999 688999999988653
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=5.2e-10 Score=84.51 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=39.2
Q ss_pred cccccccccccccCCceeEc-CCCCCcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 101 DTQCSVCLADYQAEDKLQQI-PACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||..+....
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 46799999999764 344 5 999999999999998 78999999986543
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=2.6e-09 Score=77.61 Aligned_cols=49 Identities=18% Similarity=0.518 Sum_probs=38.8
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC------CCCcc--ccCc-ccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH------TTCPL--CRLS-LLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~ 151 (251)
.+..|+||++.|..+ .+++.|||.|++.||..|+..+ .+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 467899999999864 3342499999999999999853 48999 9876 443
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.82 E-value=8.7e-10 Score=96.76 Aligned_cols=52 Identities=23% Similarity=0.642 Sum_probs=39.6
Q ss_pred CCcccccccccccccCCce----eEcCCCCCcccHhhHHHHHhcC-----------CCCccccCccc
Q 025541 99 IRDTQCSVCLADYQAEDKL----QQIPACGHAFHMDCIDHWLTTH-----------TTCPLCRLSLL 150 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~----~~~~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 150 (251)
....+|+||+..+..+..+ -..+.|+|.||..||.+||.+. ..||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3567899999998763222 2223599999999999999742 36999999875
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.81 E-value=8.9e-10 Score=76.46 Aligned_cols=43 Identities=26% Similarity=0.741 Sum_probs=36.1
Q ss_pred cccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
+..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999998764 45667 9999 999999999 789999998753
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=6.3e-09 Score=89.35 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=41.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 152 (251)
....|+||++.|..+ .+++ |||.||+.||..|+.. +.+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 578899999999865 4566 9999999999999986 44599999988644
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=7.1e-09 Score=83.18 Aligned_cols=49 Identities=31% Similarity=0.666 Sum_probs=41.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC-CCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH-TTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 152 (251)
+...|+||++.|..+ ..++ |||.||..||..|+... ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 467899999999764 4466 99999999999999864 4999999988654
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=9.9e-09 Score=74.35 Aligned_cols=48 Identities=23% Similarity=0.643 Sum_probs=39.8
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc--------CCCCcc--ccCc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT--------HTTCPL--CRLS 148 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 148 (251)
...+|+||++.+..++.+...+ |||.||..|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998776666666 9999999999999863 236999 9987
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2e-08 Score=68.42 Aligned_cols=48 Identities=23% Similarity=0.602 Sum_probs=38.3
Q ss_pred CCCcccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
...+..|.||++... .+..+| |||. ||..|+.. ...||+||..+...-
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 345678999998765 456788 9999 99999984 468999999886543
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.63 E-value=1.8e-08 Score=66.99 Aligned_cols=47 Identities=26% Similarity=0.681 Sum_probs=36.7
Q ss_pred CcccccccccccccCCceeEcCCCC--C---cccHhhHHHHHhc--CCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACG--H---AFHMDCIDHWLTT--HTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 150 (251)
+...|.||+++.. ..+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999999843 233 577 65 4 9999999999974 678999998774
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=9.7e-09 Score=71.29 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=35.2
Q ss_pred cccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
+..|+||++.+.. +..+| |||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999998765 34567 9999 99999965 36899999988653
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.60 E-value=1.9e-08 Score=81.40 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-CCCCccccCcccCC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-HTTCPLCRLSLLAP 152 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 152 (251)
.....|+||++-|..+ .+++ |||.|++.||..|+.. +.+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3578899999999864 4556 9999999999999986 35799999988654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.52 E-value=2e-08 Score=70.57 Aligned_cols=44 Identities=27% Similarity=0.647 Sum_probs=35.9
Q ss_pred cccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
+..|+||++.+.. +..+| |||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3579999998753 56677 9999 999999987 3899999988653
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.2e-07 Score=80.55 Aligned_cols=51 Identities=25% Similarity=0.541 Sum_probs=40.7
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC--CCCcc--ccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH--TTCPL--CRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~ 153 (251)
.+..||||++.|..+ ++.+. |||.|++.||..|+..+ ..||+ ||..+....
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 467799999999764 33344 99999999999999854 57999 999876543
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.37 E-value=1e-07 Score=63.46 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=40.1
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
..|+||++.|..+ .+++.|||+|.+.||.+||..+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5799999999864 34423999999999999999888899999988543
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.37 E-value=2.4e-07 Score=66.86 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=38.9
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHh-cCCCCccccCcccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-THTTCPLCRLSLLA 151 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 151 (251)
-|.+|--++.. ..+++| |+|+||.+|+..|.+ ..++||+|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 38888877755 778898 999999999999986 56899999998864
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=9.3e-08 Score=85.11 Aligned_cols=44 Identities=30% Similarity=0.788 Sum_probs=36.7
Q ss_pred CcccccccccccccCCceeEcCCCCCc-ccHhhHHHHHhcCCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHA-FHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
++..|+||++.+.. +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 35689999999864 45667 9999 999999998 689999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=70.81 Aligned_cols=50 Identities=18% Similarity=0.543 Sum_probs=40.1
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcC--CCCccccCcccCCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTH--TTCPLCRLSLLAPA 153 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 153 (251)
-..|.||.+-+..+. ..+.|+|.||..|+..|+..+ ..||.|+..+....
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 567999999988652 233499999999999999864 48999999876553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.42 E-value=0.0011 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.661 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCCceeEcCCC-CCcccHhhHHHHHhcCCCCccccCcccCCCCC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPAC-GHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKA 155 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 155 (251)
-.+-.-|-.|+-..+ .++ .| .|.+|..|+.-.|.....||+|+.+++..-..
T Consensus 25 ~~G~~nCKsCWf~~k---~LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK---GLV---ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCS---SEE---ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccC---Cee---eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 345567999996654 222 26 59999999999999999999999999876544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.00 E-value=0.015 Score=41.74 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=25.7
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
+..|.||++.+..+....-+. |+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754433444465 9999999999984
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.07 E-value=0.049 Score=36.24 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=33.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCcc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLSL 149 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 149 (251)
.+..|.||.+. + .+..--.|...||..|+.+.|.. .-.||.|....
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 3 33344459999999999988764 34799997654
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.00 E-value=0.065 Score=35.16 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=34.1
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHh-----cCCCCccccCc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----THTTCPLCRLS 148 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 148 (251)
.++..|+||...+......+.--.|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999988864444443335889999999864321 35679999653
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.98 E-value=0.21 Score=34.58 Aligned_cols=34 Identities=29% Similarity=0.642 Sum_probs=22.8
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
.|..|.||- .+.......-- -|+-+||..|+++-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 577899995 22222222222 38999999999996
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.17 E-value=0.17 Score=40.54 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=34.1
Q ss_pred ccccccccccccCCc---eeEcCCCCCcccHhhHHH------HHh-----cCCCCccccCcc
Q 025541 102 TQCSVCLADYQAEDK---LQQIPACGHAFHMDCIDH------WLT-----THTTCPLCRLSL 149 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~---~~~~~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~ 149 (251)
..|+||...|..++. .+.--.|..-||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999987752 444445899999999732 121 157899997754
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.93 E-value=0.26 Score=31.99 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccC
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
..+..|.||... + .+..--.|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346779999863 3 34444458899999999975542 346999965
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.10 E-value=0.19 Score=33.99 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHh----cCCCCccccCccc
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT----THTTCPLCRLSLL 150 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~~ 150 (251)
......|.||..... +..++.--.|.--||..|+..-+. ....||.|+..+.
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 334566999987753 333333335889999999976443 2456999976553
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.16 E-value=0.2 Score=32.61 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCcc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLSL 149 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 149 (251)
..+..|.||.+. + .+..--.|...||..|+.+-|.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456779999853 3 23333358899999999865543 34699997654
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.82 E-value=0.33 Score=30.06 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=29.2
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
.|.||...-..+..+ .--.|...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488898654333333 33359999999999764442 346999964
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.75 E-value=0.22 Score=40.50 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=33.9
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCccc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLSLL 150 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 150 (251)
..+..|.+|... + .+..-..|...||..|+.+-+.. ...||.|+..-.
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 345679999854 2 34444468999999999876653 347999986543
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.08 E-value=0.25 Score=39.42 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=33.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 150 (251)
.++.|.+|.+. ++ +..-..|.-.||..|+.+-+.. .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35679999854 33 3444458999999999876653 346999986543
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.70 E-value=0.15 Score=32.48 Aligned_cols=46 Identities=35% Similarity=0.703 Sum_probs=31.3
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
...+..|.||... + .+..-..|...||..|+.+-|.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456779999874 3 33333359999999999865543 335888853
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.09 E-value=0.34 Score=35.28 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=30.9
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCcccc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCR 146 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr 146 (251)
..++.|.||.+.-...+.+.-. .|+..||..|+...+.. ...||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899998764322223333 59999999999876642 33566664
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.44 E-value=1.1 Score=27.82 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=29.5
Q ss_pred cccccccccccCCceeEcC-CCCCcccHhhHHHH----HhcCCCCcccc
Q 025541 103 QCSVCLADYQAEDKLQQIP-ACGHAFHMDCIDHW----LTTHTTCPLCR 146 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 146 (251)
.|.||...+..+...+.-- .|..-||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789998886555444443 48889999997421 13567899885
No 88
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=83.37 E-value=2.1 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025541 24 VYQAFIFSVPIFFTFILLLLFYLFYLRRRR 53 (251)
Q Consensus 24 ~~~~~~~~v~i~~~~i~~~~~~~~~~~~~~ 53 (251)
...+...+++++ +++++.+.+++++++++
T Consensus 11 ~~~Ia~~vVGvl-l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 11 LTSIISAVVGIL-LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHH-HHHHHHHHHHhheehhh
Confidence 334455555533 44444444444555444
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.15 E-value=0.9 Score=29.86 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=32.1
Q ss_pred CcccccccccccccCCceeEcC-CCCCcccHhhHHHH------Hh----cCCCCcccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIP-ACGHAFHMDCIDHW------LT----THTTCPLCR 146 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w------l~----~~~~CP~Cr 146 (251)
....|++|...+......+.-- .|.--||..|+.-- |. ....||.|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3467999999987766665554 58999999997311 11 144688885
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.83 E-value=0.41 Score=31.54 Aligned_cols=46 Identities=26% Similarity=0.594 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
..+..|.||.+. + .+..-..|...||..|+.+-|.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356789999864 3 33333358999999999865442 3469999653
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.07 E-value=0.17 Score=32.76 Aligned_cols=46 Identities=33% Similarity=0.737 Sum_probs=31.7
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCcc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLSL 149 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 149 (251)
.+..|.||... +. +..-..|.-.||..|+.+-|.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46779999864 33 3333359999999999865542 34699996543
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.54 E-value=3.7 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=36.4
Q ss_pred CcccccccccccccCC--ceeE-cCCCCCcccHhhHHHHHh-cCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAED--KLQQ-IPACGHAFHMDCIDHWLT-THTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~--~~~~-~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 152 (251)
....|.||-+++.... .+.+ .-.|+--.|+.|..-=.. .++.||-|+..+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 4468999999864322 1221 114778899999975444 678999999888643
No 93
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.02 E-value=2.7 Score=32.11 Aligned_cols=46 Identities=28% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHh-----------cCCCCccccC
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----------THTTCPLCRL 147 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 147 (251)
...++.|.+|.+. + .+..--.|...||..||.+-|. ....||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456789999864 2 3444445999999999997652 2447999964
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.59 E-value=0.6 Score=34.07 Aligned_cols=45 Identities=33% Similarity=0.695 Sum_probs=29.9
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
.|.||...-.....+..--.|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887643233344444459999999999865543 346999974
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.79 E-value=1.6 Score=29.69 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=30.9
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHH---H--hcCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW---L--TTHTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w---l--~~~~~CP~Cr~~~ 149 (251)
...| ||...+......+.--.|..-||..|+.-- . .....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 998887533333333358899999998521 1 1356799997654
No 96
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.67 E-value=3.9 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025541 28 FIFSVPIFFTFILLLLFYLFYLRRRRV 54 (251)
Q Consensus 28 ~~~~v~i~~~~i~~~~~~~~~~~~~~~ 54 (251)
..-+|+.+++++++++..++++++++.
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 333444344444444555555555543
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.67 E-value=1 Score=30.18 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCccccccccccc-ccCCceeEcCCCCCcccHhhHHHHHh--cCCCCccccC
Q 025541 98 SIRDTQCSVCLADY-QAEDKLQQIPACGHAFHMDCIDHWLT--THTTCPLCRL 147 (251)
Q Consensus 98 ~~~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~ 147 (251)
...+..|.||.+.- .....+..--.|.-.||..|+..-.. ..-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998753 23334444446999999999975322 2346988854
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.17 E-value=0.35 Score=34.18 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=32.3
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
++..|.||...-... .+..--.|...||..|+.+=|.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456799998764333 33333359999999999854432 3469999653
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.91 E-value=0.85 Score=32.51 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=29.7
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHh---cCCCCccccC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT---THTTCPLCRL 147 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 147 (251)
..| ||......+..+.- -.|.-.||..|+..=+. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 89877655544433 35899999999965322 2357999964
No 100
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.83 E-value=3.7 Score=30.75 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=31.9
Q ss_pred CCCCcccccccccccccCCceeEcCCCCCcccHhhHHHHH------h-----cCCCCccccC
Q 025541 97 FSIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWL------T-----THTTCPLCRL 147 (251)
Q Consensus 97 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~ 147 (251)
....+..|.||.+. ..+..-..|-..||..||.+-+ . ..-.|++|+-
T Consensus 53 ~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34456679999854 2343334589999999999752 1 2357999954
No 101
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.77 E-value=3.2 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 025541 31 SVPIFFTFILLLLFYLFYLRRRR 53 (251)
Q Consensus 31 ~v~i~~~~i~~~~~~~~~~~~~~ 53 (251)
+|+.+++++++++.+++++++++
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhhH
Confidence 33334444444455555555544
No 102
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.57 E-value=1.5 Score=30.63 Aligned_cols=47 Identities=30% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCcccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
...+..|.+|... + .+..-..|.-.||..|+.+=|.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999864 3 33333358899999999876543 3469999754
No 103
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.81 E-value=0.96 Score=31.59 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=33.2
Q ss_pred Cccccccccccc-ccCCceeEcCCCCCcccHhhHHHHHh--cCCCCccccCcc
Q 025541 100 RDTQCSVCLADY-QAEDKLQQIPACGHAFHMDCIDHWLT--THTTCPLCRLSL 149 (251)
Q Consensus 100 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~ 149 (251)
.+..|.||...- .....+..-..|.-.||..|+..-+. ..-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 467899998753 22234444446889999999975332 244699996644
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.76 E-value=0.55 Score=32.81 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=34.3
Q ss_pred ccccccccccccc-CCceeEcCCCCCcccHhhHHHHHh--------cCCCCccccCccc
Q 025541 101 DTQCSVCLADYQA-EDKLQQIPACGHAFHMDCIDHWLT--------THTTCPLCRLSLL 150 (251)
Q Consensus 101 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 150 (251)
+..|.||...-.. ...+..--.|...||..|+.+-|. ....|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 5679999976432 234444446999999999986543 2457999966543
No 105
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.66 E-value=4.3 Score=27.77 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT 138 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 138 (251)
...|.+|.+.++...-+..-..=+|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45799999999887555321123699999999999874
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.35 E-value=1.2 Score=29.93 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHH------H---hcCCCCccccCc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW------L---TTHTTCPLCRLS 148 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w------l---~~~~~CP~Cr~~ 148 (251)
...| ||...+.....+.-- .|..-||..|+.-- + .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3457 898877543334333 58899999998421 1 246789999754
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.45 E-value=0.89 Score=35.63 Aligned_cols=48 Identities=17% Similarity=0.452 Sum_probs=31.9
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHH-----hcCCCCccccCc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWL-----TTHTTCPLCRLS 148 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 148 (251)
....| ||......+.....--.|...||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998865444444444589999999995211 235679999763
No 108
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=73.31 E-value=2.5 Score=42.00 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=41.9
Q ss_pred CcccccccccccccCCceeEcCCCC-CcccHhhHHHHHhcCCCCccccCcccCCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACG-HAFHMDCIDHWLTTHTTCPLCRLSLLAPA 153 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 153 (251)
+...|||-++-|.++ .++| -| +.|-+.+|.+||..+.+||+=|.++....
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 467899999999865 4566 76 68999999999999999999999887543
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.95 E-value=4.5 Score=29.27 Aligned_cols=46 Identities=24% Similarity=0.571 Sum_probs=28.4
Q ss_pred ccccccccccc-----ccCCceeEcCCCCCcccHhhHHH------HH-hcCCCCcccc
Q 025541 101 DTQCSVCLADY-----QAEDKLQQIPACGHAFHMDCIDH------WL-TTHTTCPLCR 146 (251)
Q Consensus 101 ~~~C~IC~~~~-----~~~~~~~~~~~C~H~fh~~Ci~~------wl-~~~~~CP~Cr 146 (251)
...|.+|+..- ..+..+..-..|+..||..|+.. .+ ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45699998752 12223344346999999999952 12 2345677775
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=72.19 E-value=2 Score=30.99 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=33.5
Q ss_pred ccccccccccccCCceeEcC-CCCCcccHhhHHHH------Hh----cCCCCccccCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIP-ACGHAFHMDCIDHW------LT----THTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w------l~----~~~~CP~Cr~~~~ 150 (251)
..|.||...+........-- .|..-||..|+.-- +. .+..||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46999999986654444442 48899999998411 10 3457999976543
No 111
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.02 E-value=0.59 Score=34.75 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=32.4
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 149 (251)
...|..|...|..-..--.-..||.+||..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3579999999865433233336999999999877666677898886543
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.67 E-value=0.95 Score=36.23 Aligned_cols=44 Identities=34% Similarity=0.677 Sum_probs=30.2
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
++.|.+|.+. ++ +...-.|...||..|+.+=+.. ...||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 33 3333358899999999765542 3469999765
No 113
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.33 E-value=0.83 Score=30.49 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=31.4
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHH----hcCCCCccccCc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWL----TTHTTCPLCRLS 148 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~ 148 (251)
....| ||......+...+.--.|..-||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988765554333333588999999986421 235679999654
No 114
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.32 E-value=3.2 Score=28.34 Aligned_cols=35 Identities=23% Similarity=0.602 Sum_probs=24.8
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
...|.+|...|.....--.-..||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34699999998754322233359999999998654
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.30 E-value=3.2 Score=27.67 Aligned_cols=33 Identities=15% Similarity=0.515 Sum_probs=23.5
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHH
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDH 134 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 134 (251)
..|.+|...|..-..--.-..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999875432222235999999999754
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.48 E-value=2.8 Score=31.63 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=31.3
Q ss_pred CCcccccccccccc-cCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccC
Q 025541 99 IRDTQCSVCLADYQ-AEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 99 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
..+..|.+|...|. ....-..-..|.|.+|..|-..-... .-.|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 45678999999984 33333444469999999986532111 124777754
No 117
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=69.37 E-value=1.7 Score=23.92 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=20.5
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhH
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCI 132 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci 132 (251)
..|+.|-..+...+.+. .=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 46999998887654443 26789999884
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.12 E-value=0.81 Score=31.17 Aligned_cols=44 Identities=32% Similarity=0.677 Sum_probs=27.8
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc----C-CCCccccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----H-TTCPLCRL 147 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 147 (251)
.|.||...-..+ .+..--.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543222 33333358899999999976553 2 46999975
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.83 E-value=3 Score=31.02 Aligned_cols=34 Identities=18% Similarity=0.524 Sum_probs=24.3
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
..|.+|...|.....--.-..||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4699999998754322233359999999997653
No 120
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.25 E-value=3 Score=26.97 Aligned_cols=50 Identities=18% Similarity=0.557 Sum_probs=33.6
Q ss_pred CCccccccccccccc-CCceeEcCCCCCcccHhhHHHHHh-------cCCCCccccCc
Q 025541 99 IRDTQCSVCLADYQA-EDKLQQIPACGHAFHMDCIDHWLT-------THTTCPLCRLS 148 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 148 (251)
..+..|.||...... ...+..-..|.-.||..|+..-+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 346789999976432 234444446999999999886332 34579999654
No 121
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=67.72 E-value=2.7 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025541 25 YQAFIFSVPIFFTFILLLLFYLFYLRRR 52 (251)
Q Consensus 25 ~~~~~~~v~i~~~~i~~~~~~~~~~~~~ 52 (251)
..+..-+++ ++.++++.+.+.++++++
T Consensus 8 ~sIaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 8 TFIIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred cEeHHHHHH-HHHHHHHHHHhheEEeec
Confidence 344455555 444444444444555543
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.50 E-value=4.3 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=25.1
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
...|.+|...|..-..--.-..||++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45799999998754322223359999999997664
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.47 E-value=3.7 Score=28.58 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=31.5
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh------cCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT------THTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~~ 149 (251)
...|.+|...|..-..-..-..||++||..|...++. ....|-.|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 3569999999875433233336999999999876542 123466664433
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.28 E-value=4 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.597 Sum_probs=27.8
Q ss_pred cccccccccccc------CCceeEcCCCCCcccHhhHHHHH------h-cCCCCcccc
Q 025541 102 TQCSVCLADYQA------EDKLQQIPACGHAFHMDCIDHWL------T-THTTCPLCR 146 (251)
Q Consensus 102 ~~C~IC~~~~~~------~~~~~~~~~C~H~fh~~Ci~~wl------~-~~~~CP~Cr 146 (251)
..|.||+..-.. +..+..-..|+..||..|+...+ . ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 469999875411 12333333599999999987542 1 245677764
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.32 E-value=2.9 Score=34.06 Aligned_cols=36 Identities=17% Similarity=0.520 Sum_probs=25.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
.+..|.+|...|..-..-..-..||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999998754322233369999999997654
No 126
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.95 E-value=5.5 Score=27.62 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=31.4
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-------cCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-------THTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~ 149 (251)
...|.+|...|..-..--.-..||++||..|....+. ....|-.|...+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4579999999875433233335999999999765432 123466665443
No 127
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.66 E-value=1.4 Score=30.01 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-----CCCCccccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-----HTTCPLCRL 147 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 147 (251)
+..|.||...-..+ .+..--.|...||..|+.+=|.. .-.||.|..
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34688888643333 34444469999999999864432 346999864
No 128
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=64.93 E-value=8.9 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025541 26 QAFIFSVPIFFTFILLLLFYLFYLRRR 52 (251)
Q Consensus 26 ~~~~~~v~i~~~~i~~~~~~~~~~~~~ 52 (251)
.++|++|..||+++++.+.+-++.-++
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 445555555666666555555544443
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.31 E-value=3.5 Score=33.84 Aligned_cols=36 Identities=19% Similarity=0.577 Sum_probs=26.1
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHH
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
.+..|.+|...|..-..-.....||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999998754333333369999999997754
No 130
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.68 E-value=5.5 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=29.8
Q ss_pred CCCcccccccccccccCCceeEcC--CCCCcccHhhHHHHHhc----CCCCccccCccc
Q 025541 98 SIRDTQCSVCLADYQAEDKLQQIP--ACGHAFHMDCIDHWLTT----HTTCPLCRLSLL 150 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 150 (251)
...++.|.+|.+. + .+..-- .|...||..|+. |.. .-.||.|+-.+-
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 3456779999832 2 333332 388999999997 443 335887765443
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.60 E-value=5.4 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=23.2
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHH
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDH 134 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 134 (251)
-..|.+|...|..-..--.-..||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3579999999865332222225999999998544
No 132
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.53 E-value=2.6 Score=28.54 Aligned_cols=48 Identities=25% Similarity=0.517 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeEc-CCCCCcccHhhHHHHH---------hcCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQI-PACGHAFHMDCIDHWL---------TTHTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~~ 149 (251)
...| ||......+..+.-- +.|..-||..|+.--- ..+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4567 898875444333222 0488999999995321 1356799997643
No 133
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.16 E-value=5 Score=26.63 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=27.5
Q ss_pred CcccccccccccccCCceeEcCC--CC-CcccHhhHHHHHhc----CCCCccccCcc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPA--CG-HAFHMDCIDHWLTT----HTTCPLCRLSL 149 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 149 (251)
+..-| ||..... +. ++.--. |. .-||..|+. |.. +..||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34557 8987643 32 222223 55 589999997 432 44699997643
No 134
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=63.05 E-value=1.7 Score=28.90 Aligned_cols=44 Identities=32% Similarity=0.677 Sum_probs=27.8
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc-----CCCCccccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-----HTTCPLCRL 147 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 147 (251)
.|.||...-..+ .+..--.|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776542222 33343358899999999864442 346999965
No 135
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.25 E-value=1.9 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.472 Sum_probs=29.5
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHH---hcCCCCccccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWL---TTHTTCPLCRL 147 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 147 (251)
+...| ||.........+. --.|..-||..|+.--. .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIq-Cd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEE-CTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEE-CCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9988765322333 33589999999986322 13457999864
No 136
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.52 E-value=7.1 Score=34.53 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=31.3
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-----cCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----THTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 152 (251)
...|||=+..|.. .++-.. |.|+-|.+ +..||. ....||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~--PvRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccc--cCcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHH
Confidence 3569988877765 455554 99984444 233443 245799998877554
No 137
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=60.22 E-value=14 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025541 31 SVPIFFTFILLLLFYLFY 48 (251)
Q Consensus 31 ~v~i~~~~i~~~~~~~~~ 48 (251)
+++.+..+.++..+.+|+
T Consensus 17 VvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 17 IFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 334443333333333333
No 138
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.95 E-value=2.4 Score=34.91 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=26.1
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhc-----CCCCccccC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT-----HTTCPLCRL 147 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 147 (251)
..|.+|...-..+ .+..--.|...||..|+.+=|.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887542223 33333359999999999965442 346999965
No 139
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=59.10 E-value=7.8 Score=34.13 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=31.2
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-----cCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----THTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 152 (251)
...|||=+..|.. .++... |.|+=|.+ +..||. ....||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceecc--CCcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 3469988877765 455554 99984433 333443 245799999887653
No 140
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.00 E-value=3.8 Score=29.15 Aligned_cols=11 Identities=27% Similarity=1.096 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 025541 127 FHMDCIDHWLT 137 (251)
Q Consensus 127 fh~~Ci~~wl~ 137 (251)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 141
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.82 E-value=3.8 Score=29.07 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 025541 127 FHMDCIDHWLT 137 (251)
Q Consensus 127 fh~~Ci~~wl~ 137 (251)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 142
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=57.81 E-value=2.6 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=9.8
Q ss_pred cccccccccccccC
Q 025541 101 DTQCSVCLADYQAE 114 (251)
Q Consensus 101 ~~~C~IC~~~~~~~ 114 (251)
...||||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46788888776543
No 143
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=55.82 E-value=12 Score=24.57 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025541 30 FSVPIFFTFILLLLFYLFYLR 50 (251)
Q Consensus 30 ~~v~i~~~~i~~~~~~~~~~~ 50 (251)
++++..+.+++++.+.+|+..
T Consensus 12 ivlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhh
Confidence 345555555555555555333
No 144
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.64 E-value=5.3 Score=25.62 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=29.6
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLC 145 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~C 145 (251)
..|-.|...+... ....-+.|++.||.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999988543 223456799999999965433344579887
No 145
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=54.47 E-value=2.1 Score=30.93 Aligned_cols=45 Identities=20% Similarity=0.547 Sum_probs=29.3
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
.|.||...-... .+..-..|...||..|+.+=|.. ...||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466776553322 34444469999999999865542 3469998654
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.08 E-value=7.6 Score=29.90 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=30.4
Q ss_pred CCcccccccccccccC-CceeEcCCCCCcccHhhHHHHHhc--CCCCccccC
Q 025541 99 IRDTQCSVCLADYQAE-DKLQQIPACGHAFHMDCIDHWLTT--HTTCPLCRL 147 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~ 147 (251)
..+..|.+|...|..- ..-..-..|.|.+|..|-. |+.. .-.|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3578899999987432 1223333699999999972 3332 224777754
No 147
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.75 E-value=7.8 Score=27.11 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=26.9
Q ss_pred cccccccccccccCCceeEcCC--CC-CcccHhhHHHHHhc----CCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPA--CG-HAFHMDCIDHWLTT----HTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 149 (251)
...| ||..... +. ++.--. |. .-||..|+. |.. +..||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4557 9988653 32 222113 44 579999997 332 45799997643
No 148
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=52.73 E-value=26 Score=19.77 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 025541 26 QAFIFSVPIFFTFILLLLFYLFY 48 (251)
Q Consensus 26 ~~~~~~v~i~~~~i~~~~~~~~~ 48 (251)
+..+++++.++++..+.+|.+|.
T Consensus 9 l~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 9 LAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHeeee
Confidence 33444455444444445554443
No 149
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.34 E-value=3 Score=37.25 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=0.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-------cCCCCccccCcc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-------THTTCPLCRLSL 149 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~ 149 (251)
...|.+|...|..-..-.....||++||..|...++. ....|-.|...+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999998864322222225999999999977652 134577775544
No 150
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.69 E-value=5.3 Score=25.44 Aligned_cols=42 Identities=33% Similarity=0.663 Sum_probs=26.1
Q ss_pred cccccccccccccCCceeEcCC--CC-CcccHhhHHHHHhc----CCCCccccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPA--CG-HAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
..-| ||..... + .++.--. |. .-||..|+. |.. +..||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 9987642 3 2333223 55 689999998 332 346999964
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.90 E-value=5.1 Score=25.57 Aligned_cols=42 Identities=31% Similarity=0.657 Sum_probs=25.6
Q ss_pred cccccccccccccCCceeEcCC--CC-CcccHhhHHHHHhc----CCCCccccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPA--CG-HAFHMDCIDHWLTT----HTTCPLCRL 147 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 147 (251)
..-| ||..... + .++.--. |. .-||..|+. |.. +..||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987642 3 2332223 44 579999998 442 346999954
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=49.39 E-value=16 Score=28.32 Aligned_cols=47 Identities=17% Similarity=0.500 Sum_probs=32.1
Q ss_pred CCCCCcccccccccccccCCceeEcC--CCCCcccHhhHHHHHhc----------CCCCcccc
Q 025541 96 SFSIRDTQCSVCLADYQAEDKLQQIP--ACGHAFHMDCIDHWLTT----------HTTCPLCR 146 (251)
Q Consensus 96 ~~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr 146 (251)
+.+..+..|.||-+. ..+..-. .|...||..||+.++.. .-.|=+|.
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 344456779999753 2444433 48899999999998753 23588885
No 153
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.71 E-value=10 Score=24.15 Aligned_cols=42 Identities=19% Similarity=0.586 Sum_probs=30.3
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
...|.-|...+...+.+... -+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45799999998866544322 5778998886 588888877543
No 154
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.47 E-value=15 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...|.-|-..+.....+. . .-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-E-YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-C-STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-E-ECccccCcccC--------eECCCCCcCCC
Confidence 346999999887643332 2 26788998775 58888887754
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.33 E-value=8.9 Score=25.09 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...|+.|-+.+.....+.. -+..||..|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 4579999999886655442 6788998875 58899888764
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.57 E-value=16 Score=23.39 Aligned_cols=41 Identities=17% Similarity=0.491 Sum_probs=28.4
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
..|+.|-+.+...+.+... -+..||..|+ .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4699999988765433222 5778898775 588888877543
No 157
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.39 E-value=14 Score=23.68 Aligned_cols=39 Identities=28% Similarity=0.601 Sum_probs=25.9
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..|..|-+.+........ .-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV--ALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE--CSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEE--ECCCeEcccCC--------cccccCCcCC
Confidence 468888888765432222 25778887774 4888887774
No 158
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.38 E-value=23 Score=23.57 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=29.9
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
....|..|-+.+...+.+. .-+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 4467999999886654443 26788998884 588887777543
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.16 E-value=15 Score=23.66 Aligned_cols=40 Identities=28% Similarity=0.581 Sum_probs=28.0
Q ss_pred ccccccccccccc--CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 101 DTQCSVCLADYQA--EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 101 ~~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
...|.-|-+.+.. ...+. . .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCcccC--------EeccCCCcCC
Confidence 3569999998875 22322 2 26788998875 5888888775
No 160
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.94 E-value=2.8 Score=27.53 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=26.9
Q ss_pred ccccccccccccCCceeEc-CCCCCcccHhhHHHHH---h-----cCCCCccccC
Q 025541 102 TQCSVCLADYQAEDKLQQI-PACGHAFHMDCIDHWL---T-----THTTCPLCRL 147 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 147 (251)
..| ||......+..+.-- +.|..-||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 797765555433321 1378899999983210 1 1357999974
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.65 E-value=5.2 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.693 Sum_probs=16.9
Q ss_pred CCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 122 ACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 122 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
.||+.|. .=+.....||.|+..-...
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 5999991 1123346799998866544
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.43 E-value=14 Score=24.09 Aligned_cols=43 Identities=19% Similarity=0.568 Sum_probs=29.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
....|+-|.+.+...+.+... -+..||..|+ .|-.|+..+...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 346799999998754443222 5778998774 588888777543
No 163
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.34 E-value=7.9 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=24.2
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..||+|..++..... +.+|..|-.. +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHH
Confidence 579999988764322 2234444332 244556999988763
No 164
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.06 E-value=9.7 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.601 Sum_probs=29.6
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
....|.-|-+.+..+..+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 34579999999876655543 5778998874 5888988775
No 165
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.98 E-value=16 Score=23.87 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=24.2
Q ss_pred CcccccccccccccCCceeEcCCC-CCcccHhhHHHH
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPAC-GHAFHMDCIDHW 135 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C-~H~fh~~Ci~~w 135 (251)
+..-|.||.++- .++-+. | +-+||..|.+..
T Consensus 7 e~pWC~ICneDA----tlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC----CEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC----eEEecC-CCCceehHHHHHHH
Confidence 344599999884 567775 9 899999998884
No 166
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.62 E-value=17 Score=24.03 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=29.7
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
...|..|-+.+...+.+... -+..||..|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 35799999998765543322 5788998775 588888877543
No 167
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=43.38 E-value=47 Score=19.23 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 025541 23 KVYQAFIFSVPIFFTFI 39 (251)
Q Consensus 23 ~~~~~~~~~v~i~~~~i 39 (251)
.+..+++-+++.+++.+
T Consensus 11 ~i~lII~~vmaGiIG~I 27 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 168
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.34 E-value=3.2 Score=30.21 Aligned_cols=45 Identities=22% Similarity=0.554 Sum_probs=29.2
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhc----CCCCccccCc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTT----HTTCPLCRLS 148 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 148 (251)
.|.||...-..+ .+..--.|...||..|+.+=|.. .-.||.|+..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 577887654333 33333359999999999864442 3358888654
No 169
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.25 E-value=10 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.619 Sum_probs=10.7
Q ss_pred ccccccccccCCceeEcCCCCCcccHhh
Q 025541 104 CSVCLADYQAEDKLQQIPACGHAFHMDC 131 (251)
Q Consensus 104 C~IC~~~~~~~~~~~~~~~C~H~fh~~C 131 (251)
|+.|-+.+..+..+.. -+..||..|
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred CCCCCCEEECceEEEE---CCccccCCC
Confidence 5555555443332221 244555444
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.65 E-value=19 Score=31.97 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=32.3
Q ss_pred CCCCcccccccccccccCCceeEcC--CCCCcccHhhHHHHHhc----------CCCCccccC
Q 025541 97 FSIRDTQCSVCLADYQAEDKLQQIP--ACGHAFHMDCIDHWLTT----------HTTCPLCRL 147 (251)
Q Consensus 97 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr~ 147 (251)
.+..+..|.||-+. ..+..-. .|...||.+||+.++.. .-.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34456679998754 2333333 58899999999999832 346988854
No 171
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=38.76 E-value=2.6 Score=28.63 Aligned_cols=19 Identities=32% Similarity=0.899 Sum_probs=15.5
Q ss_pred CCCCcccHhhHHHHHhcCCCC
Q 025541 122 ACGHAFHMDCIDHWLTTHTTC 142 (251)
Q Consensus 122 ~C~H~fh~~Ci~~wl~~~~~C 142 (251)
.|+|.||..|...|-. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999998854 455
No 172
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=38.66 E-value=34 Score=19.38 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 025541 43 LFYLFYLR 50 (251)
Q Consensus 43 ~~~~~~~~ 50 (251)
++|++++|
T Consensus 15 ifYFl~iR 22 (37)
T 2rdd_B 15 IFYFMILR 22 (37)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHhh
Confidence 34444444
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.99 E-value=8.4 Score=25.62 Aligned_cols=45 Identities=27% Similarity=0.553 Sum_probs=28.9
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHh-----cCCCCccccCc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----THTTCPLCRLS 148 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 148 (251)
.| ||...+..+...+.--.|.--||..|+.---. ....||.|+..
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34 89887654333433335889999999953211 34679999654
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=25 Score=23.81 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=29.7
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
...|.-|-+.+...+.+. .-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCCC
Confidence 457999999987655443 27789998875 488887777553
No 175
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.48 E-value=22 Score=23.14 Aligned_cols=39 Identities=23% Similarity=0.584 Sum_probs=27.0
Q ss_pred cccccccccccc--CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 102 TQCSVCLADYQA--EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..|+.|-+.+.. .... +. .-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~-a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-IC-FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EE-ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EE-ECCcccCcccC--------ChhhCCCcCC
Confidence 469999998875 2222 22 26788998885 5888877775
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.77 E-value=14 Score=26.82 Aligned_cols=38 Identities=18% Similarity=0.582 Sum_probs=24.9
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
.|..|-..+...+.+.. .-+..||..|+ .|-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC--------ccccCCCCCC
Confidence 58888888765433321 25778887775 4777777763
No 177
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.69 E-value=64 Score=20.12 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025541 25 YQAFIFSVPIFFTFILLLLFYLFYLR 50 (251)
Q Consensus 25 ~~~~~~~v~i~~~~i~~~~~~~~~~~ 50 (251)
..+.+++++++.+++++.++++.+++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667766666666555555444
No 178
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.36 E-value=32 Score=22.57 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=28.1
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...|+-|-+.+. +..+. .-+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCC
Confidence 457999999887 33332 36788998774 58889888764
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.73 E-value=39 Score=22.64 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=29.2
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
....|.-|.+.+.. ..+ . .-+..||..|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--K-ARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--E-SSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEE--E-ECCceECccCC--------EecCCCCCCCCC
Confidence 34579999998875 222 2 37789998875 588898887543
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.48 E-value=19 Score=26.25 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=28.9
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
...|+-|-+.+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 357999999887543233 26789998884 5999988885
No 181
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.31 E-value=19 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=9.2
Q ss_pred ccccccccccccCCc
Q 025541 102 TQCSVCLADYQAEDK 116 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~ 116 (251)
..||.|..++.....
T Consensus 3 ~~CP~C~~~l~~~~~ 17 (81)
T 2jrp_A 3 ITCPVCHHALERNGD 17 (81)
T ss_dssp CCCSSSCSCCEECSS
T ss_pred CCCCCCCCccccCCC
Confidence 357777777654433
No 182
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=33.55 E-value=7.6 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.477 Sum_probs=25.4
Q ss_pred ccccccccCCceeEcCCCCCcccHhhHHHHH---hcCCCCccccC
Q 025541 106 VCLADYQAEDKLQQIPACGHAFHMDCIDHWL---TTHTTCPLCRL 147 (251)
Q Consensus 106 IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 147 (251)
||......+..+. --.|..-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776654323333 33488999999986322 23457998864
No 183
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.85 E-value=27 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.532 Sum_probs=27.6
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
..|+.|-+.+. +.. +. .-+..||..|+ .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~~--~~-a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VN-AMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCE--EC-CTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceE--EE-ECccccccCcC--------EECCCCCCCCC
Confidence 46999999887 332 23 26788998874 58889888754
No 184
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=32.65 E-value=9.7 Score=20.52 Aligned_cols=12 Identities=25% Similarity=0.658 Sum_probs=8.3
Q ss_pred CCCccccCcccC
Q 025541 140 TTCPLCRLSLLA 151 (251)
Q Consensus 140 ~~CP~Cr~~~~~ 151 (251)
..||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876643
No 185
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.37 E-value=30 Score=21.91 Aligned_cols=40 Identities=23% Similarity=0.533 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
...|..|-+.+.. ..+. .-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccCC--------EeCCCCCcCCCC
Confidence 3569999988863 3332 25778888875 588888877654
No 186
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.34 E-value=3.7 Score=28.21 Aligned_cols=18 Identities=28% Similarity=0.916 Sum_probs=13.9
Q ss_pred eEcCCCCCcccHhhHHHH
Q 025541 118 QQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 118 ~~~~~C~H~fh~~Ci~~w 135 (251)
+.-|.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 344469999998888887
No 187
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.00 E-value=20 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=27.4
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
...|.-|-+.+... .+ . .-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~~--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FV--K-LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS-CE--E-CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccCc-EE--E-ECcceeCcCcC--------eeCCCCCCCC
Confidence 45799999988752 22 2 26789998885 5888877764
No 188
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.70 E-value=12 Score=34.39 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHh-----cCCCCccccCc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLT-----THTTCPLCRLS 148 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 148 (251)
...| ||...+..+...+..-.|.--||..|+.---. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3446 99887753333433335899999999953211 23579999754
No 189
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.17 E-value=6.7 Score=25.11 Aligned_cols=35 Identities=17% Similarity=0.581 Sum_probs=20.7
Q ss_pred cccccccccccCCceeEcC--C--CCCcccHhhHHHHHh
Q 025541 103 QCSVCLADYQAEDKLQQIP--A--CGHAFHMDCIDHWLT 137 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~--~--C~H~fh~~Ci~~wl~ 137 (251)
.||-|.-.++....-..+. . |++.|+..|...|-.
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 5888887776543222221 1 667777777777654
No 190
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=30.07 E-value=72 Score=18.23 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025541 30 FSVPIF 35 (251)
Q Consensus 30 ~~v~i~ 35 (251)
+.++++
T Consensus 9 y~vV~f 14 (38)
T 3arc_I 9 YIVVTF 14 (38)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 333333
No 191
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.07 E-value=20 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=9.9
Q ss_pred cccccccccccccC
Q 025541 101 DTQCSVCLADYQAE 114 (251)
Q Consensus 101 ~~~C~IC~~~~~~~ 114 (251)
-..|++|...+...
T Consensus 10 iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 10 ILACPACHAPLEER 23 (56)
T ss_dssp SCCCSSSCSCEEEE
T ss_pred heeCCCCCCcceec
Confidence 34699999876543
No 192
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.07 E-value=32 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.557 Sum_probs=26.1
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
...|.-|-+.+.. ..+. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT---YQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE---ETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE---ECccccccCcC--------EECCCCCCCC
Confidence 3468899888764 3332 25778888775 4888887775
No 193
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.80 E-value=31 Score=26.88 Aligned_cols=38 Identities=34% Similarity=0.781 Sum_probs=23.9
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
.|..|...+...+.+.. .-++.||..| ..|-.|...|.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 58888777765433222 2577888777 35777766664
No 194
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.57 E-value=26 Score=23.59 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=27.9
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...|+-|-+.+. +..+. .-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCC
Confidence 457999999885 33332 26789998775 58889888764
No 195
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.30 E-value=29 Score=22.80 Aligned_cols=38 Identities=32% Similarity=0.759 Sum_probs=26.8
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
..|+.|-..+. +..+. .-+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccCC--------ccccCCCCCCC
Confidence 46999999887 33333 26788998775 48888877754
No 196
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.29 E-value=25 Score=23.68 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=22.9
Q ss_pred CCCcccccccccccccC-CceeEcCCCCCcccHhhH
Q 025541 98 SIRDTQCSVCLADYQAE-DKLQQIPACGHAFHMDCI 132 (251)
Q Consensus 98 ~~~~~~C~IC~~~~~~~-~~~~~~~~C~H~fh~~Ci 132 (251)
...+..|+.|.+.|..- ..-..-+.|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 45667899999998531 122223368998888774
No 197
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.67 E-value=34 Score=22.44 Aligned_cols=39 Identities=23% Similarity=0.488 Sum_probs=26.6
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..|..|-..+.....+. . .=+..||..|+ .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~-a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-F-YEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-C-CSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEEE-E-eCCccccccCC--------eecCCCCccC
Confidence 46999999887433332 1 25788898774 4888887775
No 198
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.99 E-value=31 Score=21.80 Aligned_cols=39 Identities=21% Similarity=0.550 Sum_probs=27.2
Q ss_pred cccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
...|..|-+.+... .+ . .-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~-~~--~-a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GV--T-YREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS-EE--E-SSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeeccc-eE--E-ECccccCCCCC--------ccCCCCCcCCc
Confidence 34699999888643 32 2 26788998775 58888887743
No 199
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.96 E-value=34 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.692 Sum_probs=23.1
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.|..|...+...+.+.. .-++.||..|+ .|-.|...|..
T Consensus 67 ~C~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~~ 105 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLAT 105 (169)
T ss_dssp BCTTTCCBCCTTSEEEE--ETTEEEEGGGC--------BCTTTCCBCCT
T ss_pred cccccccccCCCcEEEE--cCCceEeeCCC--------cCCCCCCCCCC
Confidence 46666666554333221 25677777764 58888777653
No 200
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=26.81 E-value=59 Score=20.76 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=28.3
Q ss_pred cccccccccccccCCceeEcCCCCCcccHh-hHHHH
Q 025541 101 DTQCSVCLADYQAEDKLQQIPACGHAFHMD-CIDHW 135 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~-Ci~~w 135 (251)
...|.-|...+..++....-...-|+||.. ||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 567999999999988776666688999854 88775
No 201
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=26.77 E-value=91 Score=17.52 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025541 29 IFSVPIFFTFILLLLFYL 46 (251)
Q Consensus 29 ~~~v~i~~~~i~~~~~~~ 46 (251)
.+++++..+|+++..-++
T Consensus 11 t~i~gl~vif~~lg~tfl 28 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeE
Confidence 334444444444433333
No 202
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.98 E-value=50 Score=23.63 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=33.8
Q ss_pred ccccccccccccc-CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccCC
Q 025541 101 DTQCSVCLADYQA-EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAP 152 (251)
Q Consensus 101 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 152 (251)
-..|..|...+.. +... .. .=+.+||..|..+-+..+..|-.|...|...
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 4678888877752 1111 22 2577888888888666555899998888753
No 203
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.00 E-value=9.9 Score=32.74 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCcccccccccccccCCceeE---cCCCCCcccHhhHHHHHhcCCCCccccCc
Q 025541 99 IRDTQCSVCLADYQAEDKLQQ---IPACGHAFHMDCIDHWLTTHTTCPLCRLS 148 (251)
Q Consensus 99 ~~~~~C~IC~~~~~~~~~~~~---~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 148 (251)
+....||+|-..-... .++. ..+=.|.+|.-|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4456899998764332 1110 00112566667777787778889999654
No 204
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.98 E-value=42 Score=21.60 Aligned_cols=40 Identities=20% Similarity=0.522 Sum_probs=27.9
Q ss_pred cccccccccccc---CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 102 TQCSVCLADYQA---EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 102 ~~C~IC~~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
..|+-|-..+.. ..... .. =+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeE-EE-CcceeCcccC--------EehhcCCCCCC
Confidence 569999998874 22222 22 5788998874 58899888753
No 205
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.64 E-value=13 Score=23.92 Aligned_cols=42 Identities=31% Similarity=0.629 Sum_probs=25.9
Q ss_pred cccccccccccccCCceeEcCC--CC-CcccHhhHHHHHh----cCCCCccccC
Q 025541 101 DTQCSVCLADYQAEDKLQQIPA--CG-HAFHMDCIDHWLT----THTTCPLCRL 147 (251)
Q Consensus 101 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~ 147 (251)
..-| ||.... .+ .++.--. |. .-||..|+. |. .+..||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 998863 23 2332223 44 789999997 33 2456999964
No 206
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.95 E-value=72 Score=20.79 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025541 27 AFIFSVPIFFTFILLLLFYLFYLRRR 52 (251)
Q Consensus 27 ~~~~~v~i~~~~i~~~~~~~~~~~~~ 52 (251)
+++-.+..++.|+-+.+|...-.+++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhR 37 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHR 37 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHH
Confidence 67777777777777777755544433
No 207
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.82 E-value=66 Score=20.50 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=19.6
Q ss_pred CCCcccccccccc-cccCCceeEcCCCCCcccHhhHHHH
Q 025541 98 SIRDTQCSVCLAD-YQAEDKLQQIPACGHAFHMDCIDHW 135 (251)
Q Consensus 98 ~~~~~~C~IC~~~-~~~~~~~~~~~~C~H~fh~~Ci~~w 135 (251)
..+...|.||+.. |.++-.-.-. -|.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCcccc-ccCCeeecccCCEe
Confidence 4456789999974 4443222212 24445555555444
No 208
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.54 E-value=19 Score=23.67 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=12.5
Q ss_pred HHHhcCCCCccccCcccC
Q 025541 134 HWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 134 ~wl~~~~~CP~Cr~~~~~ 151 (251)
+||..--.||.|+.++..
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 445555679999887764
No 209
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.47 E-value=57 Score=20.32 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=27.2
Q ss_pred cccccccccccCCceeEcCCCCCccc--HhhHHHHHhcCCCCccccCcccC
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFH--MDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.|+-|-+.+..++.... .-+..|| ..|+ .|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~--a~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT--YNNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE--ETTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE--ECCCccCCCCCCE--------ECCCCCCcCCC
Confidence 58999998876422222 2678899 8884 58888888753
No 210
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.27 E-value=56 Score=23.46 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=27.4
Q ss_pred Cccccccccccccc-CCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQA-EDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.-..|..|...+.. +.... . .=|.+||..|..+-+.....|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-E-ETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEE-E-ECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 34567777766642 11211 1 145667777766644433367777776653
No 211
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.85 E-value=67 Score=20.56 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=25.7
Q ss_pred ccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 102 TQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 102 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
..|+-|-..+.. ..+ . .-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCcC--------EeCCCCCCCC
Confidence 468899888764 222 2 36788998874 5888877775
No 212
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.54 E-value=5.3 Score=20.37 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.9
Q ss_pred cccHhhHHHHHh
Q 025541 126 AFHMDCIDHWLT 137 (251)
Q Consensus 126 ~fh~~Ci~~wl~ 137 (251)
.||..|-++||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 577788777775
No 213
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.70 E-value=25 Score=26.87 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=14.1
Q ss_pred CCCCcccHhhHHHHHhcCCCCccccCcc
Q 025541 122 ACGHAFHMDCIDHWLTTHTTCPLCRLSL 149 (251)
Q Consensus 122 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 149 (251)
.|||.|-.. .....||.|...+
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 488887533 2234799997764
No 214
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.47 E-value=49 Score=23.38 Aligned_cols=37 Identities=30% Similarity=0.631 Sum_probs=18.1
Q ss_pred cccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCccc
Q 025541 103 QCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLL 150 (251)
Q Consensus 103 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 150 (251)
.|+-|-..+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~C~~C~~~I~~~~~~~---a~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFLK---AIDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp CBSSSCSCBCSSEEEE---CSSSEECTTTC--------CCSSSCSCCC
T ss_pred CCcCCCCeeCCcEEEE---ECchhHHHhcC--------cccccCCchh
Confidence 4666666555321221 14555665553 3555655554
No 215
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.13 E-value=35 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=27.5
Q ss_pred CcccccccccccccCCceeEcCCCCCcccHhhHHHHHhcCCCCccccCcccC
Q 025541 100 RDTQCSVCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLA 151 (251)
Q Consensus 100 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 151 (251)
.-..|..|...+..... . .=|.+||..|..+- -...|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~f---~-~~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF---S-RGESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE---E-ETTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce---e-ECCEeeecCccccc--cccccccCCCccCC
Confidence 45778888877765421 1 14667777766552 23457777666654
Done!