BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025542
MAGIHWFGQTHQSVNRRSILGSIHGVKCCSGTVNDGNKNTNNKTATPQILKFAVSGVTEL
LRLFSSFDKGRLDKVSYKQKYEILVSGIDDIVTILRSDYENAYFVTGIFTSEIYAEDCIF
EDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTA
LGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSALEA
VGQIFTPGDRN

High Scoring Gene Products

Symbol, full name Information P value
AT3G04890 protein from Arabidopsis thaliana 1.3e-29
AT2G46100 protein from Arabidopsis thaliana 7.0e-12

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025542
        (251 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114875 - symbol:AT3G04890 "AT3G04890" species...   328  1.3e-29   1
TAIR|locus:2062989 - symbol:AT2G46100 "AT2G46100" species...   119  7.0e-12   2


>TAIR|locus:2114875 [details] [associations]
            symbol:AT3G04890 "AT3G04890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 EMBL:AC009465 InterPro:IPR018790
            Pfam:PF10184 EMBL:AK318619 IPI:IPI00892084 RefSeq:NP_001118575.1
            UniGene:At.19068 ProteinModelPortal:B3H4P9 STRING:B3H4P9
            PaxDb:B3H4P9 PRIDE:B3H4P9 EnsemblPlants:AT3G04890.2 GeneID:819649
            KEGG:ath:AT3G04890 TAIR:At3g04890 eggNOG:NOG13822
            HOGENOM:HOG000012487 OMA:NYILATW PhylomeDB:B3H4P9
            ProtClustDB:CLSN2688075 Genevestigator:B3H4P9 Uniprot:B3H4P9
        Length = 221

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/112 (58%), Positives = 80/112 (71%)

Query:    46 TPQILKFAVSGVTELLRLFSSFDKGRLDKVSY-KQKYEILVSGIDDIVTILRSDYENAYF 104
             TP +LK+AVSGVTE LRL S          +  + K E+    +DD++ ILRSDY N YF
Sbjct:    34 TPAVLKWAVSGVTEFLRLISGAPSSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYF 93

Query:   105 VTGIFTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEK 156
             VTG+ TS IY++DCIFEDPTI F+GTELY RNL+LLVPF E  SI LQN+EK
Sbjct:    94 VTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDASIELQNMEK 145

 Score = 118 (46.6 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:   144 FEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLK 203
             FE P+I  Q  E +   + L+V   E     L N            Y+L    + RTYLK
Sbjct:   109 FEDPTISFQGTELYERNLKLLVPFLEDASIELQNMEK--SESSQRNYILATWKL-RTYLK 165

Query:   204 LPWKPLISIDGSTVYELNDELK 225
             LPW+PLISI+G+TVY+L+ + K
Sbjct:   166 LPWRPLISINGNTVYDLDKDFK 187


>TAIR|locus:2062989 [details] [associations]
            symbol:AT2G46100 "AT2G46100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR InterPro:IPR018790 Pfam:PF10184
            UniGene:At.48599 UniGene:At.66444 EMBL:BT014789 EMBL:BT015018
            IPI:IPI00526559 RefSeq:NP_182134.2 ProteinModelPortal:Q6ID84
            STRING:Q6ID84 PRIDE:Q6ID84 ProMEX:Q6ID84 EnsemblPlants:AT2G46100.1
            GeneID:819218 KEGG:ath:AT2G46100 TAIR:At2g46100
            HOGENOM:HOG000240965 InParanoid:Q6ID84 OMA:ATGYTEY
            ProtClustDB:CLSN2680274 Genevestigator:Q6ID84 Uniprot:Q6ID84
        Length = 240

 Score = 119 (46.9 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
 Identities = 41/154 (26%), Positives = 64/154 (41%)

Query:     8 GQTHQSVNRRSILGSIHGVKCCSGTVNDGNKNTNNKTATPQILKFAVSGVTELLRLFSS- 66
             G   +S+ R +      GV C      D  + +        +LK A  G +ELL + +S 
Sbjct:    19 GDGGRSIFRTNRRFEATGVSCRGQNPTDEPQTSKGPEPDNVLLKIAWYG-SELLGIAASV 77

Query:    67 FDKGRLDKVSYKQKYEILVSGID---DIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDP 123
             F       +    +  +  SG      +V  ++ D++ +YFVTG  T E+Y E C F DP
Sbjct:    78 FRSPETSPIVTGFEVPVDCSGRAVRVAVVDSIKQDFKRSYFVTGNLTPEVYEEKCEFADP 137

Query:   124 TIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKF 157
                F+G   + RN        E  ++ L   E F
Sbjct:   138 AGSFKGLARFKRNCTNFGSLIEKSNMKLMKWENF 171

 Score = 98 (39.6 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query:   202 LKLPWKPLISIDGSTVYELNDEL-KITRHAESWNVSALEAVGQIFTP 247
             +  PWKP++S  G T Y  + E  KI RH E WNV  +    Q+  P
Sbjct:   185 MSFPWKPILSATGYTEYYFDTESGKICRHVEHWNVPKIALFKQLLRP 231


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       251   0.00081  114 3  11 22  0.41    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  192 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.27u 0.16s 21.43t   Elapsed:  00:00:01
  Total cpu time:  21.27u 0.16s 21.43t   Elapsed:  00:00:01
  Start:  Fri May 10 13:43:35 2013   End:  Fri May 10 13:43:36 2013

Back to top