Query 025542
Match_columns 251
No_of_seqs 135 out of 328
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 100.0 1.5E-28 3.2E-33 197.0 13.6 108 90-229 2-113 (113)
2 TIGR02096 conserved hypothetic 99.3 1.4E-10 3E-15 91.0 13.0 110 95-237 4-123 (129)
3 cd00781 ketosteroid_isomerase 99.2 2E-10 4.3E-15 89.6 9.1 100 105-238 17-120 (122)
4 PF12680 SnoaL_2: SnoaL-like d 99.0 3.9E-09 8.5E-14 77.3 9.9 88 109-229 15-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 98.9 2.3E-08 5E-13 78.9 10.8 109 95-236 3-120 (126)
6 KOG4457 Uncharacterized conser 98.6 3.3E-07 7.2E-12 79.9 9.8 113 87-230 34-165 (202)
7 PF07858 LEH: Limonene-1,2-epo 98.0 7.3E-05 1.6E-09 61.9 10.4 116 88-238 3-119 (125)
8 PRK08241 RNA polymerase factor 97.9 0.00029 6.3E-09 65.0 13.2 121 87-249 212-336 (339)
9 TIGR02960 SigX5 RNA polymerase 97.5 0.0021 4.6E-08 58.6 12.7 111 89-240 204-320 (324)
10 PF13474 SnoaL_3: SnoaL-like d 96.8 0.021 4.5E-07 43.4 10.4 53 104-156 12-68 (121)
11 COG4319 Ketosteroid isomerase 96.2 0.095 2.1E-06 44.4 11.4 104 91-224 11-120 (137)
12 cd00531 NTF2_like Nuclear tran 95.6 0.4 8.7E-06 35.2 11.3 47 95-142 4-57 (124)
13 TIGR02246 conserved hypothetic 95.5 0.38 8.2E-06 37.0 11.4 52 92-144 6-60 (128)
14 PF14534 DUF4440: Domain of un 94.3 0.64 1.4E-05 34.0 9.4 45 109-155 19-63 (107)
15 COG3631 Ketosteroid isomerase- 91.9 2.2 4.9E-05 35.5 10.0 114 91-239 6-127 (133)
16 COG5485 Predicted ester cyclas 88.1 1.7 3.6E-05 36.6 6.2 93 114-240 30-128 (131)
17 COG4308 LimA Limonene-1,2-epox 84.5 5.9 0.00013 33.3 7.6 110 88-237 8-121 (130)
18 PF13577 SnoaL_4: SnoaL-like d 79.5 25 0.00054 26.7 10.5 50 92-142 9-63 (127)
19 PF03284 PHZA_PHZB: Phenazine 67.7 84 0.0018 27.4 10.7 96 111-236 39-142 (162)
20 PRK09636 RNA polymerase sigma 65.5 68 0.0015 29.1 9.9 56 87-144 169-234 (293)
21 KOG2546 Abl interactor ABI-1, 57.2 2.8 6.2E-05 41.7 -0.6 87 109-227 90-180 (483)
22 PF02136 NTF2: Nuclear transpo 42.1 1.5E+02 0.0033 22.5 12.5 59 93-155 4-66 (118)
23 PF08830 DUF1806: Protein of u 24.7 1.5E+02 0.0032 24.6 4.5 22 202-226 70-91 (114)
24 COG4922 Uncharacterized protei 22.8 4.7E+02 0.01 22.1 7.5 15 127-141 43-57 (129)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.96 E-value=1.5e-28 Score=196.96 Aligned_cols=108 Identities=40% Similarity=0.686 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhhhhcccCCccccccccceeeeCCCccccChHHHHHH---HHHhhc-cccCceEEEeeeeEeeeeehhhc
Q 025542 90 DIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRFRGTELYSRN---LRLLVP-FFEYPSIGLQNIEKFVFLVSLMV 165 (251)
Q Consensus 90 ~ll~~L~~Dy~~~Yfvtg~~~~~iY~eD~~F~DP~~~f~Gld~y~~~---~~~L~~-~~~~~~f~l~~~e~~~~~~~~~~ 165 (251)
+++++|++||+++| +|+++.+||++||.|+||+++|+|+++|+++ ++.|.. +|.+++++++++++.+
T Consensus 2 ~~~~~Lr~D~~~~f--~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~------- 72 (113)
T PF10184_consen 2 DVIRTLREDLPRFF--TGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDG------- 72 (113)
T ss_pred hHHHHHHHHHHHHh--cCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECC-------
Confidence 57899999999875 9999999999999999999999999999999 777777 7889999999998632
Q ss_pred cccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEE
Q 025542 166 GRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRH 229 (251)
Q Consensus 166 ~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H 229 (251)
+++|+++|+|++.+++||+|.+.++|.|+|++|++|+|++|
T Consensus 73 -----------------------~~~I~~rW~~~g~~~l~w~p~~~~~G~S~~~ln~~g~I~~H 113 (113)
T PF10184_consen 73 -----------------------EDTIRARWRLRGVPRLPWRPRISFDGTSTYTLNSDGLIYRH 113 (113)
T ss_pred -----------------------CCEEEEEEEEEEEeCCCcCCcEEEEEEEEEEECCCCcEEeC
Confidence 12466999999999999999999999999999999999998
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.26 E-value=1.4e-10 Score=90.97 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=84.0
Q ss_pred HHHHhhhhhcccCC--ccccccccceeeeCCCc--cccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhcccccc
Q 025542 95 LRSDYENAYFVTGI--FTSEIYAEDCIFEDPTI--RFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREG 170 (251)
Q Consensus 95 L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~~--~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~ 170 (251)
+++.|+. +.+++ ...++|++|+.|.||.. ...|++.+++.++.++..+.+.+++++++...
T Consensus 4 v~~~~~a--~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 68 (129)
T TIGR02096 4 AQHWIEA--FNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRND------------- 68 (129)
T ss_pred HHHHHHH--HHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEec-------------
Confidence 3444543 35666 78899999999999964 47789999999999988887777777766431
Q ss_pred ccccccccccCCCceeeccceeeEEEEEEEEee-----C-CCCCeeEEEEEEEEEEcCCCCEEEEEEeccCCh
Q 025542 171 RMRGLHNSTALGGHIFLLPYLLRISLICRTYLK-----L-PWKPLISIDGSTVYELNDELKITRHAESWNVSA 237 (251)
Q Consensus 171 ~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lk-----L-Pw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa 237 (251)
++ .. +.+.|+|++.++ + |-+..+.+.|++.++++ +|||++|++|||..+
T Consensus 69 -----------~~-~~-----v~~~~~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~-~gkI~~~~~y~D~~~ 123 (129)
T TIGR02096 69 -----------EG-VR-----VAAEWTVHGTYRTAFLGLPASGKTYSIRGVTFFVFD-DGKIKRETTYYNLAT 123 (129)
T ss_pred -----------CC-cE-----EEEEEEEeeeeccccCCCCCCCCEEEeeeeEEEEEe-CCEEEEEEEEecHHH
Confidence 11 01 228999999985 2 34557899999999998 699999999999653
No 3
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.16 E-value=2e-10 Score=89.65 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=71.9
Q ss_pred ccCC--ccccccccceeeeCCCc--cccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhcccccccccccccccc
Q 025542 105 VTGI--FTSEIYAEDCIFEDPTI--RFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTA 180 (251)
Q Consensus 105 vtg~--~~~~iY~eD~~F~DP~~--~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~~~~~~~~~~~ 180 (251)
..++ .+.++|++||+|.||.. .++|.+.+++.+..+..... .+.+...... .
T Consensus 17 ~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~----------------------~ 72 (122)
T cd00781 17 NAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAK--RLELTGPVRA----------------------S 72 (122)
T ss_pred HCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCc--eEEecCceee----------------------e
Confidence 4555 78899999999999965 49999999999998865432 2222111110 1
Q ss_pred CCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChh
Q 025542 181 LGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSAL 238 (251)
Q Consensus 181 ~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~ 238 (251)
.|+.+. +.|+++.... +..+.+.|++.++|+++|||.++++|||....
T Consensus 73 ~g~~~~-------~~~~~~~~~~---g~~~~~~~~~v~~~~~dGkI~~~~~y~d~~~~ 120 (122)
T cd00781 73 HGGEAA-------FAFRVEFEWE---GQPCVVRVIDVMRFDADGRIVSMRAYWGPVNL 120 (122)
T ss_pred cCCEEE-------EEEEEEEEeC---CceEEEEEEEEEEECCCccChHHHHhcCcccc
Confidence 223333 7888775543 44688999999999878999999999998654
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.00 E-value=3.9e-09 Score=77.28 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=71.3
Q ss_pred ccccccccceeeeCCCccccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhccccccccccccccccCCCceeec
Q 025542 109 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTALGGHIFLL 188 (251)
Q Consensus 109 ~~~~iY~eD~~F~DP~~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~i~ 188 (251)
...++|++||.|.||....+|.++|...++.+...+...++++.++.. .|+.+.
T Consensus 15 ~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~gd~v~-- 68 (102)
T PF12680_consen 15 AIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFA------------------------DGDRVV-- 68 (102)
T ss_dssp HHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE------------------------ETTEEE--
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEE------------------------cCCEEE--
Confidence 567999999999999889999999999999998877777788877743 122233
Q ss_pred cceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEE
Q 025542 189 PYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRH 229 (251)
Q Consensus 189 p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H 229 (251)
+.|++++.. .|-+..+.+.|++.+++. +|||++|
T Consensus 69 -----~~~~~~~~~-~~~g~~~~~~~~~~~~~~-dgkI~~~ 102 (102)
T PF12680_consen 69 -----VEWTVTGTT-PPTGQPISFRGCSVFRFE-DGKIVEH 102 (102)
T ss_dssp -----EEEEEEEEE-TTTSCEEEEEEEEEEEEE-TTEEEEE
T ss_pred -----EEEEEEEEE-cCCCCEEEEEEEEEEEEE-CCEEEEC
Confidence 889998873 345567899999999994 5999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=98.88 E-value=2.3e-08 Score=78.93 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=85.4
Q ss_pred HHHHhhhhhcccCC--ccccccccceeeeCCC-ccccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhccccccc
Q 025542 95 LRSDYENAYFVTGI--FTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGR 171 (251)
Q Consensus 95 L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~-~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~~ 171 (251)
+++.|... +.+++ ...++|++||.+.+|. ....|++.|+..+..+...|.+.++.+.++...
T Consensus 3 v~~~~~~~-~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~-------------- 67 (126)
T PF07366_consen 3 VRRFYEEV-WNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAE-------------- 67 (126)
T ss_dssp HHHHHHHH-HHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEE--------------
T ss_pred HHHHHHHH-HhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE--------------
Confidence 34445433 23444 7889999999999997 799999999999999999998888888777531
Q ss_pred cccccccccCCCceeeccceeeEEEEEEEEee--C----CCCCeeEEEEEEEEEEcCCCCEEEEEEeccCC
Q 025542 172 MRGLHNSTALGGHIFLLPYLLRISLICRTYLK--L----PWKPLISIDGSTVYELNDELKITRHAESWNVS 236 (251)
Q Consensus 172 ~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lk--L----Pw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~s 236 (251)
|+ .|-++|+++|.|. + |=+..+.+.|++.|++++ |||++|..+||.-
T Consensus 68 ----------gd-------~v~~~~~~~Gth~g~~~g~~ptgk~v~~~~~~~~~~~~-gkI~e~~~~~D~~ 120 (126)
T PF07366_consen 68 ----------GD-------RVAVRWTFTGTHTGEFMGIPPTGKPVEFRGMSIFRFED-GKIVEEWVYFDEL 120 (126)
T ss_dssp ----------TT-------EEEEEEEEEEEESSEBTTBE-TTEEEEEEEEEEEEEET-TEEEEEEEEECHH
T ss_pred ----------CC-------EEEEEEEEEEeecCCcCCcCCCCCEEEEEEEEEEEEEC-CEEEEEEEEECHH
Confidence 11 2339999999994 2 344578999999999997 9999999999964
No 6
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=3.3e-07 Score=79.88 Aligned_cols=113 Identities=16% Similarity=0.298 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHhhhhhcccCCccccccccceeeeCCCccc--cChHHHHHHHHHhhc----cccCceEEEeeeeEeeee
Q 025542 87 GIDDIVTILRSDYENAYFVTGIFTSEIYAEDCIFEDPTIRF--RGTELYSRNLRLLVP----FFEYPSIGLQNIEKFVFL 160 (251)
Q Consensus 87 ~~~~ll~~L~~Dy~~~Yfvtg~~~~~iY~eD~~F~DP~~~f--~Gld~y~~~~~~L~~----~~~~~~f~l~~~e~~~~~ 160 (251)
..+-+-++|++..... .-..++.++|+.|+.|.|-+.++ +|+..|...|+.+.. ++....|++..+..
T Consensus 34 ~L~~~yerLr~tlPkl--F~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~---- 107 (202)
T KOG4457|consen 34 QLEHVYERLRETLPKL--FRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTP---- 107 (202)
T ss_pred HHHHHHHHHHHHhHHH--HhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecc----
Confidence 4566788999999877 34678999999999999998655 699999988876643 34444565555542
Q ss_pred ehhhccccccccccccccccCCCceeeccceeeEEEEEEEEe--eCCCCCee--------E---EEEEEEEEEcCCCCEE
Q 025542 161 VSLMVGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYL--KLPWKPLI--------S---IDGSTVYELNDELKIT 227 (251)
Q Consensus 161 ~~~~~~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~l--kLPw~P~i--------~---v~G~T~~~fd~~GkI~ 227 (251)
. +...+||+|||+.+.. .+-|+|++ + ++|.|++.+|++|+|+
T Consensus 108 ---------h----------------~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~GlI~ 162 (202)
T KOG4457|consen 108 ---------H----------------IDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGNGLIY 162 (202)
T ss_pred ---------c----------------CCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCCceEE
Confidence 1 1123688999999874 45577754 2 8899999999999999
Q ss_pred EEE
Q 025542 228 RHA 230 (251)
Q Consensus 228 ~H~ 230 (251)
+|+
T Consensus 163 kh~ 165 (202)
T KOG4457|consen 163 KHT 165 (202)
T ss_pred eee
Confidence 995
No 7
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=98.00 E-value=7.3e-05 Score=61.93 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhhhcccCCccccccccc-eeeeCCCccccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhcc
Q 025542 88 IDDIVTILRSDYENAYFVTGIFTSEIYAED-CIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVG 166 (251)
Q Consensus 88 ~~~ll~~L~~Dy~~~Yfvtg~~~~~iY~eD-~~F~DP~~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~ 166 (251)
.+++++.+.+-++.. +-......++++| ++..-|.-.++|+++.++.++.|...+....++++++...
T Consensus 3 ~~~vV~~F~~a~~~~--D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaad--------- 71 (125)
T PF07858_consen 3 PEEVVRAFLAALEDR--DVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAAD--------- 71 (125)
T ss_dssp HHHHHHHHHHHHHHT---HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEE---------
T ss_pred hHHHHHHHHHHHHcC--CHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeec---------
Confidence 355666666666543 1122456788999 7788999999999999999998865555556777777641
Q ss_pred ccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChh
Q 025542 167 RREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSAL 238 (251)
Q Consensus 167 ~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~ 238 (251)
|... +.+|+..-..-.....+.+.-+-++++.+ |||+.-|||||+...
T Consensus 72 ----------------g~~V-------ltER~D~l~~~dG~~~~~~~V~GvfEv~d-GkI~~WRDYFD~~~~ 119 (125)
T PF07858_consen 72 ----------------GDVV-------LTERTDVLRFADGPLRIQFPVCGVFEVRD-GKITLWRDYFDLADF 119 (125)
T ss_dssp ----------------TTEE-------EEEEEEEEEETTTTEEEEEEEEEEEEEET-TEEEEEEEE--HHHH
T ss_pred ----------------CCEE-------EEEeEeeeeeecCCeEEEEEEEEEEEEEC-CEEEEEeccCCHHHH
Confidence 2222 77887655432222346666666777765 999999999998643
No 8
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.87 E-value=0.00029 Score=65.01 Aligned_cols=121 Identities=16% Similarity=0.045 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHhhhhhcccCC--ccccccccceeeeCCCcc--ccChHHHHHHHHHhhccccCceEEEeeeeEeeeeeh
Q 025542 87 GIDDIVTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVS 162 (251)
Q Consensus 87 ~~~~ll~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~~~--f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~ 162 (251)
..+...+.++++|+.. .+|| -..+++++||.+.+|... +.|.+++...+..+........+.+....
T Consensus 212 ~~~~~~~~v~~~~~A~--~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~------- 282 (339)
T PRK08241 212 DDPEERALLARYVAAF--EAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTR------- 282 (339)
T ss_pred CChHHHHHHHHHHHHH--hcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEee-------
Confidence 4455666777777755 6777 677899999999999876 99999999999886433221223332211
Q ss_pred hhccccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChhhHhh
Q 025542 163 LMVGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSALEAVG 242 (251)
Q Consensus 163 ~~~~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~~al~ 242 (251)
+.|+.+. + +... + +-+..+.+.|...++++ +|||++-++|||. +.+.
T Consensus 283 -----------------~~g~~v~-------~-~~~~---~-~~g~~~~~~~v~v~~v~-dGkI~~~~~y~d~---~~~~ 329 (339)
T PRK08241 283 -----------------ANGQPAF-------A-QYMR---D-PDGGGHRPWALHVLELR-GGRIAHVTSFLDT---TLFP 329 (339)
T ss_pred -----------------cCCCeEE-------E-EEEE---c-CCCCeeecceEEEEEEe-CCEEEEEEEEcCh---hhhh
Confidence 1233333 2 2111 1 11234678899999998 5999999999997 5677
Q ss_pred hhcCCCC
Q 025542 243 QIFTPGD 249 (251)
Q Consensus 243 Q~~~p~~ 249 (251)
++..|.+
T Consensus 330 ~~~~~~~ 336 (339)
T PRK08241 330 RFGLPAT 336 (339)
T ss_pred hcCCCCC
Confidence 7777654
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.48 E-value=0.0021 Score=58.61 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhhhcccCC--ccccccccceeeeCCCcc--ccChHHHHHHHHHh--hccccCceEEEeeeeEeeeeeh
Q 025542 89 DDIVTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLL--VPFFEYPSIGLQNIEKFVFLVS 162 (251)
Q Consensus 89 ~~ll~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~~~--f~Gld~y~~~~~~L--~~~~~~~~f~l~~~e~~~~~~~ 162 (251)
+...+.+.+.|+.. .+|| -+.+++++||.|.+|... +.|.+++...|..+ ...+. .+.+....
T Consensus 204 ~~~~~~v~~~~~a~--~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~--~~~~~~~~------- 272 (324)
T TIGR02960 204 PEEQDLLERYIAAF--ESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAA--GMRLLPTI------- 272 (324)
T ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCC--ceeEEEee-------
Confidence 34455566666644 6788 678999999999999754 99999999999887 33333 33332211
Q ss_pred hhccccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChhhH
Q 025542 163 LMVGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSALEA 240 (251)
Q Consensus 163 ~~~~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~~a 240 (251)
.+|+.+. +.|. .. +-+..+.+.|+..++|. +|||+....|||-....+
T Consensus 273 -----------------~~g~~~~-------v~~~----~~-~~~~~~~~~~v~~~~~~-dGkI~~~~~~~~~~~~~~ 320 (324)
T TIGR02960 273 -----------------ANGQPAA-------AMYM----RR-PDAERHTAFQLHVLEIR-GGRITHVTAFLDGPSLFA 320 (324)
T ss_pred -----------------ecCCceE-------EEEE----Ec-CCCCeeeeeEEEEEEEc-CCcEEEEEEEcCCHHHHh
Confidence 1233343 4442 11 12335678999999994 799999999999665444
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.83 E-value=0.021 Score=43.41 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=41.2
Q ss_pred cccCC--ccccccccceeeeCCC--ccccChHHHHHHHHHhhccccCceEEEeeeeE
Q 025542 104 FVTGI--FTSEIYAEDCIFEDPT--IRFRGTELYSRNLRLLVPFFEYPSIGLQNIEK 156 (251)
Q Consensus 104 fvtg~--~~~~iY~eD~~F~DP~--~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~ 156 (251)
|..+| .+.++|++|+.+.+|. ..++|.++++++++..+..+....+++.++..
T Consensus 12 ~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 68 (121)
T PF13474_consen 12 FERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQV 68 (121)
T ss_dssp HHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEE
T ss_pred HHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEE
Confidence 35666 7889999999998854 56789999999998877766666777776654
No 11
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=96.22 E-value=0.095 Score=44.44 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhhhcccCC--ccccccccceeeeCCC-ccccChHHHHHHHHHhhccccC-ceEEEeeeeEeeeeehhhcc
Q 025542 91 IVTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPT-IRFRGTELYSRNLRLLVPFFEY-PSIGLQNIEKFVFLVSLMVG 166 (251)
Q Consensus 91 ll~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~-~~f~Gld~y~~~~~~L~~~~~~-~~f~l~~~e~~~~~~~~~~~ 166 (251)
.++..-.|+... +..++ -..+.|+|||.|-||. ..++|.+.|+++|+-.+..+.. ..|.+.+++..+
T Consensus 11 ~I~a~i~dw~~A-v~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~-------- 81 (137)
T COG4319 11 AIRAAIADWAAA-VRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHE-------- 81 (137)
T ss_pred HHHHHHHHHHHH-HhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeec--------
Confidence 344444444322 12344 4567799999999996 8999999999999888776554 477777776432
Q ss_pred ccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEc--CCC
Q 025542 167 RREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELN--DEL 224 (251)
Q Consensus 167 ~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd--~~G 224 (251)
.|+-+|+. ..|.+.+. .+-+|...+.|.-++.|. .+|
T Consensus 82 --------------~GD~a~~~-----~~~~~~~~--~~dg~~~~~~~Rat~v~rK~~dg 120 (137)
T COG4319 82 --------------SGDVAFVT-----ALLLLTGT--KKDGPPADLAGRATYVFRKEADG 120 (137)
T ss_pred --------------cCCEEEEE-----Eeeeeecc--CCCCcchhheeeeEEEEEEcCCC
Confidence 34557754 88888887 346777778888777664 454
No 12
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=95.57 E-value=0.4 Score=35.18 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=35.3
Q ss_pred HHHHhhhhhcccCC--ccccccccceeeeCCC-----ccccChHHHHHHHHHhhc
Q 025542 95 LRSDYENAYFVTGI--FTSEIYAEDCIFEDPT-----IRFRGTELYSRNLRLLVP 142 (251)
Q Consensus 95 L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~-----~~f~Gld~y~~~~~~L~~ 142 (251)
|...|... +++++ .+..+|++|++|..|. ..+.|.++++..+..+..
T Consensus 4 l~~~y~~~-ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 57 (124)
T cd00531 4 FLYRYARL-LDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPF 57 (124)
T ss_pred HHHHHHHH-hCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCC
Confidence 34444433 24444 6899999999999998 678999999999988753
No 13
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=95.50 E-value=0.38 Score=36.96 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHHhhhhhcccCC--ccccccccceeeeCC-CccccChHHHHHHHHHhhccc
Q 025542 92 VTILRSDYENAYFVTGI--FTSEIYAEDCIFEDP-TIRFRGTELYSRNLRLLVPFF 144 (251)
Q Consensus 92 l~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP-~~~f~Gld~y~~~~~~L~~~~ 144 (251)
++.|.+.|... +.+++ .+.++|++|+.|.++ -..+.|.+++..++..+....
T Consensus 6 i~~l~~~~~~a-~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~ 60 (128)
T TIGR02246 6 IRALVATWEAA-WAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGP 60 (128)
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhccc
Confidence 44444555433 35666 689999999999854 446899999999998776544
No 14
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=94.34 E-value=0.64 Score=34.03 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=34.5
Q ss_pred ccccccccceeeeCCCccccChHHHHHHHHHhhccccCceEEEeeee
Q 025542 109 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIE 155 (251)
Q Consensus 109 ~~~~iY~eD~~F~DP~~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e 155 (251)
.+.++|++|+.|..|.....|.+.+.+.+..- .+....+.+...+
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~--~~~~~~~~~~~~~ 63 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKSG--FARFSSIKFEDVE 63 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHH--CEEEEEEEEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhc--cCCCceEEEEEEE
Confidence 77899999999999999888999998888652 2344555555543
No 15
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=91.92 E-value=2.2 Score=35.54 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhhhcccCC--ccccccccceeeeCCC-----cc-ccChHHHHHHHHHhhccccCceEEEeeeeEeeeeeh
Q 025542 91 IVTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPT-----IR-FRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVS 162 (251)
Q Consensus 91 ll~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~-----~~-f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~ 162 (251)
-.+.++..|... ..|+ .+.+++++|+++.=|. -. +.|.+.....|..+-..++..++.+..+-..+
T Consensus 6 ~~~~v~~~f~a~--~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~g---- 79 (133)
T COG3631 6 NTDLVRRYFAAL--SRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSG---- 79 (133)
T ss_pred hhhHHHHHHHHH--hcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcC----
Confidence 345566666644 5666 7899999999998332 22 34677777778777777777777776655422
Q ss_pred hhccccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChhh
Q 025542 163 LMVGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKITRHAESWNVSALE 239 (251)
Q Consensus 163 ~~~~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~~ 239 (251)
+. .. .+.|.-.. +.-..+| ..-.=...+++.+ |||++.++|||.-+..
T Consensus 80 -------D~------------~~-------~v~~~~~~-~~~~G~~-~~~~~~~v~~vrd-GrI~~~~~y~D~~~~~ 127 (133)
T COG3631 80 -------DP------------VG-------AVFRTRGR-VSRTGKP-YENRYAFVIRVRD-GRITRYREYVDTLALA 127 (133)
T ss_pred -------Cc------------eE-------EEEEecCc-ccccCce-eecceEEEEEEeC-CEEEEEEEEechHhHH
Confidence 11 11 13343321 2222333 3333345566664 9999999999975543
No 16
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=88.10 E-value=1.7 Score=36.65 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=62.6
Q ss_pred cccceeeeCCCccccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhccccccccccccccccCCCceeeccceee
Q 025542 114 YAEDCIFEDPTIRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTALGGHIFLLPYLLR 193 (251)
Q Consensus 114 Y~eD~~F~DP~~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~i~p~~v~ 193 (251)
+-+||.+- ..+..|++.|.+++..+++-+-+-+|++..+.. +|+.|.
T Consensus 30 fv~~~v~~--ng~~~glsgyr~ml~~df~aiPdl~f~ie~lva-------------------------------e~~~va 76 (131)
T COG5485 30 FVDGNVMH--NGRLQGLSGYREMLVRDFSAIPDLSFEIERLVA-------------------------------EGDRVA 76 (131)
T ss_pred CCcCeeee--CCceechHHHHHHHHhhHhhCCCcceEEEEEee-------------------------------cCCceE
Confidence 44555554 467789999999999999888888888866542 134455
Q ss_pred EEEEEEEEee-----C-CCCCeeEEEEEEEEEEcCCCCEEEEEEeccCChhhH
Q 025542 194 ISLICRTYLK-----L-PWKPLISIDGSTVYELNDELKITRHAESWNVSALEA 240 (251)
Q Consensus 194 ~~Wrm~~~lk-----L-Pw~P~i~v~G~T~~~fd~~GkI~~H~DyWD~sa~~a 240 (251)
++-.|.|.++ + |-+.++.+.-..-|+|- +|||+.|.-..|..|.++
T Consensus 77 arl~Fdctp~G~i~Gip~nGkrV~Fse~vfy~f~-~~KI~~vwsv~Dk~ai~r 128 (131)
T COG5485 77 ARLTFDCTPSGEIMGIPPNGKRVRFSENVFYEFE-NGKIVEVWSVIDKMAIER 128 (131)
T ss_pred EEEEEccCcCceEeccCCCCcEEEeehhhhhhhc-CCeEEeeehhccHHHHHH
Confidence 8888887764 2 33445555444444554 489999877777766554
No 17
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.48 E-value=5.9 Score=33.32 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhhhcccCC-ccccccccceeeeC-CCccccChHHHHHHHH-HhhccccCceEEEeeeeEeeeeehhh
Q 025542 88 IDDIVTILRSDYENAYFVTGI-FTSEIYAEDCIFED-PTIRFRGTELYSRNLR-LLVPFFEYPSIGLQNIEKFVFLVSLM 164 (251)
Q Consensus 88 ~~~ll~~L~~Dy~~~Yfvtg~-~~~~iY~eD~~F~D-P~~~f~Gld~y~~~~~-~L~~~~~~~~f~l~~~e~~~~~~~~~ 164 (251)
+-++++.+.+-+++. -++ -...++.+|-+... |+...+|.+.-...+. .|.+.+ .-.|+|+.+..-+
T Consensus 8 pi~~V~aF~aA~~~~---d~~~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~-~~ef~I~riAadg------ 77 (130)
T COG4308 8 PIRTVEAFLAALQED---DGDAAVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGIL-GFEFKILRIAADG------ 77 (130)
T ss_pred cHHHHHHHHHHHHhc---CccHHHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcc-eeEEEEEEEeccc------
Confidence 345677777777665 223 55667777777775 4788999998766664 222222 1256777665322
Q ss_pred ccccccccccccccccCCCceeeccceeeEEEEEEEEeeCCCCCee-EEEEEEEEEEcCCCCEEEEEEeccCCh
Q 025542 165 VGRREGRMRGLHNSTALGGHIFLLPYLLRISLICRTYLKLPWKPLI-SIDGSTVYELNDELKITRHAESWNVSA 237 (251)
Q Consensus 165 ~~~~e~~~~~~~~~~~~~g~~~i~p~~v~~~Wrm~~~lkLPw~P~i-~v~G~T~~~fd~~GkI~~H~DyWD~sa 237 (251)
+..+ +=|+. ...-+|.+ .+.-+-.|+..+ |||+.-|||+|+-+
T Consensus 78 ------------------~~Vl--------tER~D---~~~~g~~~~~~~V~GvfEV~~-~rI~~WRDYFDv~~ 121 (130)
T COG4308 78 ------------------GAVL--------TERLD---ARIDGPLWVQFWVCGVFEVED-GRIVLWRDYFDVND 121 (130)
T ss_pred ------------------ceeh--------hhhhh---hhccCCcEEEEEEEEEEEEeC-CEEEeehhhhhHHH
Confidence 1111 11111 11123333 355556677764 89999999999754
No 18
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=79.48 E-value=25 Score=26.68 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhhcccCC--ccccccccceeeeCCC---ccccChHHHHHHHHHhhc
Q 025542 92 VTILRSDYENAYFVTGI--FTSEIYAEDCIFEDPT---IRFRGTELYSRNLRLLVP 142 (251)
Q Consensus 92 l~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~---~~f~Gld~y~~~~~~L~~ 142 (251)
+..|...|.. ++++++ ...++|++|+.|.=|- ..++|.+++.+.+.....
T Consensus 9 I~~l~~~~~~-~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~ 63 (127)
T PF13577_consen 9 IRDLIARYAR-ALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFD 63 (127)
T ss_dssp HHHHHHHHHH-HHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcc
Confidence 3344444432 245666 7899999999998664 589999999999988753
No 19
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=67.73 E-value=84 Score=27.44 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=59.5
Q ss_pred ccccccceeeeCCC------ccccChHHHHHHHHHhhccccCceEEEeeeeEeeeeehhhccccccccccccccccCCCc
Q 025542 111 SEIYAEDCIFEDPT------IRFRGTELYSRNLRLLVPFFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTALGGH 184 (251)
Q Consensus 111 ~~iY~eD~~F~DP~------~~f~Gld~y~~~~~~L~~~~~~~~f~l~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~g~ 184 (251)
-++|++|=.=--++ .-++|.+++.+.-..+...| |..+.++++.++ . +|
T Consensus 39 h~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcF--PDWeW~nv~ife-----------T----------~D-- 93 (162)
T PF03284_consen 39 HELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCF--PDWEWYNVRIFE-----------T----------QD-- 93 (162)
T ss_dssp GGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHS--TT-EEEEEEEEE-----------B----------SS--
T ss_pred heeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHC--CCcEEEEEEeec-----------c----------cC--
Confidence 47888886544333 24899999999665555445 456777777664 2 11
Q ss_pred eeeccceeeEEEEEEEEeeCCCCCeeEEEEEE--EEEEcCCCCEEEEEEeccCC
Q 025542 185 IFLLPYLLRISLICRTYLKLPWKPLISIDGST--VYELNDELKITRHAESWNVS 236 (251)
Q Consensus 185 ~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T--~~~fd~~GkI~~H~DyWD~s 236 (251)
|+.+-+.=+=++...+|.-|...++-.= -++|++ |||.+.+|+.|..
T Consensus 94 ----P~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~n-GkI~~~REFmNp~ 142 (162)
T PF03284_consen 94 ----PNHFWVECDGRGKILFPGYPEGYYENHFIHSFELEN-GKIKRNREFMNPF 142 (162)
T ss_dssp ----TTEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEET-TEEEEEEEEE-HH
T ss_pred ----CCEEEEEecCccceecCCCCcccceeeeEEEEEeeC-CEEEeehhhcCHH
Confidence 2222366666777888998876655432 267775 9999999998864
No 20
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=65.46 E-value=68 Score=29.15 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhhhhhcccCC--ccccccccceeee-CCC-------ccccChHHHHHHHHHhhccc
Q 025542 87 GIDDIVTILRSDYENAYFVTGI--FTSEIYAEDCIFE-DPT-------IRFRGTELYSRNLRLLVPFF 144 (251)
Q Consensus 87 ~~~~ll~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~-DP~-------~~f~Gld~y~~~~~~L~~~~ 144 (251)
..+.-.+.+.+++..+ ..|| -+.+++++||.|. |+- ..+.|.+...+.|..+...+
T Consensus 169 ~~~~~~~~v~~f~~A~--~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~ 234 (293)
T PRK09636 169 SDEEGAELVEAFFAAL--ASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRY 234 (293)
T ss_pred CchHHHHHHHHHHHHH--HhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhc
Confidence 3334445555555533 5777 7889999999999 653 44789999999988876544
No 21
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=57.24 E-value=2.8 Score=41.72 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=58.9
Q ss_pred ccccccccceeeeCCCccccChHHHHHHHHHhhc----cccCceEEEeeeeEeeeeehhhccccccccccccccccCCCc
Q 025542 109 FTSEIYAEDCIFEDPTIRFRGTELYSRNLRLLVP----FFEYPSIGLQNIEKFVFLVSLMVGRREGRMRGLHNSTALGGH 184 (251)
Q Consensus 109 ~~~~iY~eD~~F~DP~~~f~Gld~y~~~~~~L~~----~~~~~~f~l~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~g~ 184 (251)
..-++|+.+|.|.|+-+.++++..|..|+..+.. ++.++-..+..+.+- .
T Consensus 90 s~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkP---------------i----------- 143 (483)
T KOG2546|consen 90 SQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKP---------------I----------- 143 (483)
T ss_pred hhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceecc---------------c-----------
Confidence 4467899999999999999999999999865432 111111111111110 0
Q ss_pred eeeccceeeEEEEEEEEeeCCCCCeeEEEEEEEEEEcCCCCEE
Q 025542 185 IFLLPYLLRISLICRTYLKLPWKPLISIDGSTVYELNDELKIT 227 (251)
Q Consensus 185 ~~i~p~~v~~~Wrm~~~lkLPw~P~i~v~G~T~~~fd~~GkI~ 227 (251)
.|.. ++|.-+|. +.+|.++-...|++++.|+..|.-.
T Consensus 144 d~~m-----Ld~igHGI-r~~~~~rg~~~g~~t~~l~rs~pst 180 (483)
T KOG2546|consen 144 DYSM-----LDDIGHGI-RGSWETRGRFDGTSTGKLSRSGPST 180 (483)
T ss_pred ccee-----eecccccc-ccccccccCcCcccccccCCCCCcc
Confidence 1222 88888887 7788888888999999998766433
No 22
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=42.13 E-value=1.5e+02 Score=22.47 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhcccCC--ccccccccceeeeCCCcc--ccChHHHHHHHHHhhccccCceEEEeeee
Q 025542 93 TILRSDYENAYFVTGI--FTSEIYAEDCIFEDPTIR--FRGTELYSRNLRLLVPFFEYPSIGLQNIE 155 (251)
Q Consensus 93 ~~L~~Dy~~~Yfvtg~--~~~~iY~eD~~F~DP~~~--f~Gld~y~~~~~~L~~~~~~~~f~l~~~e 155 (251)
.-+++.|+.+ ..++ .+..+|++|+.+.++... +.|.++..+.+..|-..- .++.+..+.
T Consensus 4 ~Fv~~Yy~~~--d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d 66 (118)
T PF02136_consen 4 SFVQQYYQLF--DSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVD 66 (118)
T ss_dssp HHHHHHHHHH--HHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEE
T ss_pred HHHHHHHHHH--ccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccc
Confidence 3445555544 4533 689999999999999877 999999999999885332 256665554
No 23
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=24.74 E-value=1.5e+02 Score=24.65 Aligned_cols=22 Identities=32% Similarity=0.780 Sum_probs=13.8
Q ss_pred eeCCCCCeeEEEEEEEEEEcCCCCE
Q 025542 202 LKLPWKPLISIDGSTVYELNDELKI 226 (251)
Q Consensus 202 lkLPw~P~i~v~G~T~~~fd~~GkI 226 (251)
+..-| +-++|.|+|++|++|+.
T Consensus 70 ~~~GW---vYaEGLTh~e~d~~~rL 91 (114)
T PF08830_consen 70 LEIGW---VYAEGLTHYEVDEEGRL 91 (114)
T ss_dssp ESSSE---EEEEEE-EEEE-TT--E
T ss_pred cCCCE---EEEccceeeEEcCCCcE
Confidence 34445 78999999999987753
No 24
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=4.7e+02 Score=22.10 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=12.9
Q ss_pred ccChHHHHHHHHHhh
Q 025542 127 FRGTELYSRNLRLLV 141 (251)
Q Consensus 127 f~Gld~y~~~~~~L~ 141 (251)
-.|.+.|.++|..++
T Consensus 43 pdGk~~fv~fFt~ff 57 (129)
T COG4922 43 PDGKDGFVRFFTEFF 57 (129)
T ss_pred CCchHHHHHHHHHHH
Confidence 469999999998886
Done!