Query 025544
Match_columns 251
No_of_seqs 187 out of 823
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n91_A ORF, hypothetical prote 99.9 1.2E-27 4.2E-32 191.6 8.2 93 152-245 5-99 (108)
2 1jrm_A MTH0637, conserved hypo 99.9 6.1E-27 2.1E-31 186.3 7.5 94 152-249 4-99 (104)
3 3fac_A Putative uncharacterize 65.6 3.7 0.00013 31.5 2.7 30 105-137 66-95 (118)
4 1t6a_A Rbstp2229 gene product; 57.6 7.5 0.00026 31.5 3.2 39 181-223 75-118 (126)
5 3j20_Y 30S ribosomal protein S 55.2 5.4 0.00019 27.1 1.7 24 97-121 11-34 (50)
6 3djh_A Macrophage migration in 53.0 25 0.00086 26.5 5.4 56 165-221 37-97 (114)
7 3kan_A D-dopachrome tautomeras 49.9 30 0.001 26.4 5.5 56 165-221 37-98 (117)
8 3lrr_A Probable ATP-dependent 49.7 4.5 0.00016 32.4 0.7 21 102-122 1-21 (121)
9 3b64_A Macrophage migration in 48.2 28 0.00096 25.9 5.0 57 165-222 38-99 (112)
10 3fwu_A Macrophage migration in 47.7 46 0.0016 26.1 6.4 56 165-221 59-119 (133)
11 1x6m_A GFA, glutathione-depend 46.5 11 0.00037 31.7 2.6 19 104-122 96-114 (196)
12 3fwt_A Macrophage migration in 43.6 27 0.00091 27.4 4.4 56 165-221 59-119 (133)
13 3t5s_A Gilaa.00834.A, macropha 40.6 37 0.0013 26.7 4.8 42 180-221 73-119 (135)
14 3abf_A 4-oxalocrotonate tautom 40.2 21 0.00071 23.5 2.8 22 200-221 21-42 (64)
15 4dh4_A MIF; trimer, isomerase; 39.8 28 0.00094 26.1 3.8 55 165-221 38-98 (114)
16 2opa_A Probable tautomerase YW 39.0 19 0.00064 23.5 2.4 22 200-221 20-41 (61)
17 2wkb_A Macrophage migration in 38.7 51 0.0017 25.1 5.2 54 167-221 40-98 (125)
18 1otf_A 4-oxalocrotonate tautom 38.6 19 0.00064 23.5 2.3 22 200-221 20-41 (62)
19 1uiz_A MIF, macrophage migrati 36.2 39 0.0013 25.1 4.1 40 182-221 54-98 (115)
20 3hrd_B Nicotinate dehydrogenas 34.8 55 0.0019 29.6 5.6 45 183-227 33-77 (330)
21 2xcz_A Possible ATLS1-like lig 34.3 51 0.0018 24.4 4.5 54 167-221 40-98 (115)
22 2lo3_A SAGA-associated factor 33.0 11 0.00039 25.3 0.5 20 100-119 10-30 (44)
23 4a2v_A RIG-I, retinoic acid in 32.0 13 0.00043 30.3 0.7 21 102-122 3-23 (131)
24 2x4k_A 4-oxalocrotonate tautom 31.9 28 0.00097 22.4 2.4 23 199-221 22-44 (63)
25 3m20_A 4-oxalocrotonate tautom 31.8 33 0.0011 23.0 2.7 22 201-222 20-41 (62)
26 1hfo_A Migration inhibitory fa 29.3 35 0.0012 25.3 2.7 40 182-221 53-97 (113)
27 3m21_A Probable tautomerase HP 28.0 35 0.0012 23.1 2.4 23 200-222 23-45 (67)
28 2os5_A Acemif; macrophage migr 27.6 38 0.0013 25.5 2.7 54 167-221 40-98 (119)
29 1gyx_A YDCE, B1461, hypothetic 27.5 35 0.0012 23.8 2.3 22 200-221 21-42 (76)
30 4hhu_A OR280; engineered prote 26.9 1.6E+02 0.0054 24.0 6.4 65 181-249 38-105 (170)
31 3mb2_A 4-oxalocrotonate tautom 26.8 43 0.0015 23.0 2.7 23 200-222 21-43 (72)
32 3ry0_A Putative tautomerase; o 25.6 42 0.0014 22.5 2.4 22 200-221 20-41 (65)
33 2k4x_A 30S ribosomal protein S 23.9 21 0.00073 24.6 0.6 16 105-120 35-50 (55)
34 1mww_A Hypothetical protein HI 23.3 50 0.0017 25.0 2.7 39 183-221 57-100 (128)
35 3ga3_A Interferon-induced heli 23.0 24 0.00081 28.8 0.8 19 104-122 10-28 (133)
36 3u5c_f 40S ribosomal protein S 22.9 24 0.00081 28.7 0.8 13 106-118 138-150 (152)
37 3ej9_A Alpha-subunit of trans- 21.9 52 0.0018 23.1 2.4 23 200-222 21-43 (76)
38 1rm6_A 4-hydroxybenzoyl-COA re 21.8 1.1E+02 0.0039 30.7 5.6 45 183-227 469-513 (769)
39 1n62_B Carbon monoxide dehydro 21.3 1.1E+02 0.0037 31.0 5.4 45 183-227 516-560 (809)
40 1u2c_A Dystroglycan; IG-like d 20.8 3.8E+02 0.013 23.7 8.2 31 197-227 145-175 (246)
41 3eqt_A ATP-dependent RNA helic 20.3 29 0.00099 28.6 0.8 20 103-122 10-29 (145)
No 1
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=99.94 E-value=1.2e-27 Score=191.61 Aligned_cols=93 Identities=23% Similarity=0.452 Sum_probs=86.4
Q ss_pred CCceeecCCCeEEEEEEEecCCcccceeeeeCCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCceeEE
Q 025544 152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSKLL 231 (251)
Q Consensus 152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K~V 231 (251)
.+||++.++| +.|+|+|+|+|++++|.+++++.|+|+|+|||+|||||+||++|||+.||||+|+|+|++|++||+|+|
T Consensus 5 m~~~~~~~~~-v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v 83 (108)
T 1n91_A 5 MSAVTVNDDG-LVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQI 83 (108)
T ss_dssp CCSEEECSSE-EEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEE
T ss_pred cceEEECCCe-EEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEEecCCCCccEE
Confidence 4588887777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcc--CCHHHHHHHH
Q 025544 232 VVED--LSARQVYEKL 245 (251)
Q Consensus 232 ~I~g--ls~e~v~~~L 245 (251)
+|.+ .+++++...|
T Consensus 84 ~I~~~~~~~~~i~~~~ 99 (108)
T 1n91_A 84 KIINPQQIPPEVAALI 99 (108)
T ss_dssp EEESCCCCCHHHHCCC
T ss_pred EEeCCcCCHHHHHHhh
Confidence 9998 6788776543
No 2
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=99.93 E-value=6.1e-27 Score=186.27 Aligned_cols=94 Identities=17% Similarity=0.368 Sum_probs=89.5
Q ss_pred CCceeecCCCeEEEEEEEecCCcccceeeee--CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCcee
Q 025544 152 PPCISQLEGGLVQVAIEVEDRAQRSAITRVN--ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNKSK 229 (251)
Q Consensus 152 PpcI~~~~~G~v~L~V~VkP~Akr~~I~~~~--~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR~K 229 (251)
.+||++.++| +.|+|+|+|+|++++|.+++ ++.|+|+|+|||+|||||+||++|||+.|| |+|+|++|++||+|
T Consensus 4 m~~~~~~~~~-~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i~~G~tsR~K 79 (104)
T 1jrm_A 4 MDCLREVGDD-LLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK 79 (104)
T ss_dssp CCCEEEETTE-EEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred chhEEECCCc-EEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence 4689888888 99999999999999999966 999999999999999999999999999999 99999999999999
Q ss_pred EEEEccCCHHHHHHHHHhhc
Q 025544 230 LLVVEDLSARQVYEKLLEAV 249 (251)
Q Consensus 230 ~V~I~gls~e~v~~~L~~~l 249 (251)
+|+|.|++++++.++|.+.+
T Consensus 80 ~v~I~~~~~~~l~~~L~~~~ 99 (104)
T 1jrm_A 80 TIRIQGMGRDLFLKLVSEKF 99 (104)
T ss_dssp EEEEESCCHHHHHHHHHHTS
T ss_pred EEEEcCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 3
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=65.57 E-value=3.7 Score=31.46 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred ccccCCCCCceeEEEecCCCccceEEEEEcCcc
Q 025544 105 FRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 137 (251)
Q Consensus 105 yR~~C~~CgLpl~Y~~~~~~~~~~~~yi~~gAL 137 (251)
.|+-|+.||-+|||+... ...+++|--|.|
T Consensus 66 ~r~FC~~CGs~l~~~~~~---~~~~~~V~~g~l 95 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQRRS---NPEEYGVNVAIL 95 (118)
T ss_dssp EEEEETTTCCEEEEECSS---CTTEEEEEGGGB
T ss_pred eeEECCCCCccccCccCC---CCCEEEEEeccc
Confidence 466799999999998653 234666655555
No 4
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=57.64 E-value=7.5 Score=31.51 Aligned_cols=39 Identities=26% Similarity=0.569 Sum_probs=30.2
Q ss_pred eeCCeEEEEEeCCCC-----cChhhHHHHHHHHhhcCccCCcEEEEec
Q 025544 181 VNADDVRVTVAAPAA-----RGEANNELLEFMGKVLSLRLSQMTLQRG 223 (251)
Q Consensus 181 ~~~d~L~V~VtApP~-----dGKAN~eLi~fLAk~LgVpks~VsIv~G 223 (251)
..++.=-|.|.-|+. +|||| |+++||||.|. ..+.|-.|
T Consensus 75 ~e~~~~fIQi~LP~~AThGDKgKAN-EfckfLAK~l~---geL~LFNG 118 (126)
T 1t6a_A 75 TAGEETFIDIALPPGATHGDKGKAN-EFSKWLAKTLG---GELHLFSG 118 (126)
T ss_dssp EETTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHHHC---EEEECTTS
T ss_pred ccCCcceEEEECCCCCCcCcchhHH-HHHHHHHHHhh---hheeeecC
Confidence 355666677777764 68999 58999999998 77777776
No 5
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.22 E-value=5.4 Score=27.11 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=15.5
Q ss_pred CCCcccccccccCCCCCceeEEEec
Q 025544 97 GEGKLEKQFRMNCIGCGLFVCYRSE 121 (251)
Q Consensus 97 ~~G~iEkQyR~~C~~CgLpl~Y~~~ 121 (251)
.+|+|++++++ |++||-.+++...
T Consensus 11 ~~~kv~~~~k~-CP~CG~~~fm~~~ 34 (50)
T 3j20_Y 11 KDGKVIRKNKF-CPRCGPGVFMADH 34 (50)
T ss_dssp CSSCEECSSEE-CSSSCSSCEEEEC
T ss_pred ECCEEEEeccc-CCCCCCceEEecC
Confidence 34567766554 7788887777644
No 6
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=53.00 E-value=25 Score=26.45 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=34.4
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCCCC-----cChhhHHHHHHHHhhcCccCCcEEEE
Q 025544 165 VAIEVEDRAQRSAITRVNADDVRVTVAAPAA-----RGEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~-----dGKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
|.|.+.|+..- .+.|-.+...-+.|++-.. +-+--++|.++|.+.|||++.++-|.
T Consensus 37 vmV~~~~~~~m-~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~ 97 (114)
T 3djh_A 37 IAVHVVPDQLM-AFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYIN 97 (114)
T ss_dssp CEEEEECSCEE-EETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred eEEEEeCCceE-EEcCcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence 55666776632 2233334455555554322 22233677889999999999999886
No 7
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=49.86 E-value=30 Score=26.35 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=34.3
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCCCC------cChhhHHHHHHHHhhcCccCCcEEEE
Q 025544 165 VAIEVEDRAQRSAITRVNADDVRVTVAAPAA------RGEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtApP~------dGKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
|.|.+.|+..-. +.|-.+...-+.|++-.. ..+-.++|.++|.+.|||+++++-|.
T Consensus 37 vmV~v~~~~~m~-fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~ 98 (117)
T 3kan_A 37 VNVTVRPGLAMA-LSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIR 98 (117)
T ss_dssp CEEEEECSCCCC-BTTBCSSCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEEeCCCeEE-ECCCCCceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 557777766532 333334444344443221 23344678889999999999999886
No 8
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=49.73 E-value=4.5 Score=32.44 Aligned_cols=21 Identities=19% Similarity=0.676 Sum_probs=18.5
Q ss_pred cccccccCCCCCceeEEEecC
Q 025544 102 EKQFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 102 EkQyR~~C~~CgLpl~Y~~~~ 122 (251)
|..|++.|++|..+++|-++-
T Consensus 1 ~~~~~llC~kC~~~~C~g~DI 21 (121)
T 3lrr_A 1 KENKKLLCRKCKALACYTADV 21 (121)
T ss_dssp CCCEEEEETTTCCEEEEGGGE
T ss_pred CCCEEEECCCCCeEEEeccce
Confidence 467999999999999998774
No 9
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=48.18 E-value=28 Score=25.86 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=36.0
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCCC-CcChhhH----HHHHHHHhhcCccCCcEEEEe
Q 025544 165 VAIEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEANN----ELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN~----eLi~fLAk~LgVpks~VsIv~ 222 (251)
+.|.+.|+..- .+.|..+...-|.|+.-+ .....|+ +|.++|++.||+++.+|-|.-
T Consensus 38 ~~v~~~~~~~~-~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (112)
T 3b64_A 38 VMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLY 99 (112)
T ss_dssp CEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCceE-EECCCCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 34444455443 233445677777777554 3344454 556678889999999998863
No 10
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=47.75 E-value=46 Score=26.08 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=37.1
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCCC-CcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025544 165 VAIEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
+.|.+.|+..- .+.|-.+...-+.|++-. .....| ++|.++|.+.|||++.+|-|.
T Consensus 59 vmV~~~~~~~m-~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~ 119 (133)
T 3fwu_A 59 VMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVL 119 (133)
T ss_dssp CEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEECCceE-EECCcCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 56666776543 233445667777777542 333344 567788888999999999886
No 11
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=46.55 E-value=11 Score=31.72 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.8
Q ss_pred cccccCCCCCceeEEEecC
Q 025544 104 QFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 104 QyR~~C~~CgLpl~Y~~~~ 122 (251)
-.|+-|+.||-+|||+...
T Consensus 96 ~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 96 IQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp EEEEEETTTCCEEEEEECC
T ss_pred eeeEECCCCCCcCCccccc
Confidence 3567799999999999764
No 12
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=43.65 E-value=27 Score=27.44 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=34.8
Q ss_pred EEEEEecCCcccceeeeeCCeEEEEEeCC-CCcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025544 165 VAIEVEDRAQRSAITRVNADDVRVTVAAP-AARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L~V~VtAp-P~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
+.|.+.|+..- .+.|-.+...-+.|++- -.....| ++|.++|.+.|||++.+|-|.
T Consensus 59 v~V~~~~~~~m-~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvyI~ 119 (133)
T 3fwt_A 59 VMTAFSDKTPI-SFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVF 119 (133)
T ss_dssp CEEEEECSCCC-CBTTBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEECCceE-EECCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 55666675543 23333455655566542 1222333 567888889999999999886
No 13
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=40.57 E-value=37 Score=26.69 Aligned_cols=42 Identities=2% Similarity=-0.026 Sum_probs=29.2
Q ss_pred eeeCCeEEEEEeCCC-----CcChhhHHHHHHHHhhcCccCCcEEEE
Q 025544 180 RVNADDVRVTVAAPA-----ARGEANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 180 ~~~~d~L~V~VtApP-----~dGKAN~eLi~fLAk~LgVpks~VsIv 221 (251)
|-.+...-+.|++-. .+-+--++|.++|.+.||||+.+|-|.
T Consensus 73 Gs~dp~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~ 119 (135)
T 3t5s_A 73 TSTDLCCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYIS 119 (135)
T ss_dssp TBCCSCEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cccceEEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEE
Confidence 334566666666432 222334678899999999999999886
No 14
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=40.23 E-value=21 Score=23.51 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
=++|.+.|++.||+|...|.|.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~ 42 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVI 42 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEE
Confidence 3566778899999999999876
No 15
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=39.84 E-value=28 Score=26.11 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=32.6
Q ss_pred EEEEEecCCcccceeeeeCCeE--EEEEeCCCCcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025544 165 VAIEVEDRAQRSAITRVNADDV--RVTVAAPAARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 165 L~V~VkP~Akr~~I~~~~~d~L--~V~VtApP~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
+.|.+.|+..- .+.|-.+... .|++... .....| ++|.++|.+.||+++.++-|.
T Consensus 38 v~V~~~~~~~m-~fgGs~~p~a~v~i~~ig~-~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~ 98 (114)
T 4dh4_A 38 VMVGYSQTGQM-RFGGSSDPCAFIRVASIGG-ITSSTNCKIAAALSAACERHLGVPKNRIYTT 98 (114)
T ss_dssp CEEEEEECSCC-CBTTBCSCCEEEEEEEESC-CCHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEeCCceE-EECCcCCCeEEEEEEEEcC-CCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 45666776532 2333334444 4444432 122333 567788889999999999886
No 16
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=38.98 E-value=19 Score=23.51 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
=++|.+.|++.||+|..+|.|.
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~ 41 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVF 41 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEE
Confidence 3566778888999999998876
No 17
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=38.74 E-value=51 Score=25.08 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=31.2
Q ss_pred EEEecCCcccceeeeeCCeEEEEEeCCC-CcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025544 167 IEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 167 V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
|.+.|+... .+.+-.+...-|.|+.-. ..-..| ++|.++|++.||+++.+|.|.
T Consensus 40 V~~~~~~~~-~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~ 98 (125)
T 2wkb_A 40 SNYDYQKNL-RFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIE 98 (125)
T ss_dssp EEEEECTTC-EETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEcCCce-EeCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence 444454432 122233566666666443 222334 556678889999999999886
No 18
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=38.59 E-value=19 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
-++|.+.|++.||+|..++.++
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~ 41 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVL 41 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEE
Confidence 4567788899999999998876
No 19
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=36.22 E-value=39 Score=25.11 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=27.2
Q ss_pred eCCeEEEEEeCCC-CcChhhH----HHHHHHHhhcCccCCcEEEE
Q 025544 182 NADDVRVTVAAPA-ARGEANN----ELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 182 ~~d~L~V~VtApP-~dGKAN~----eLi~fLAk~LgVpks~VsIv 221 (251)
++...-|.|+.-. .....|+ +|.++|++.||+++.+|.|.
T Consensus 54 ~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~ 98 (115)
T 1uiz_A 54 TDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYIN 98 (115)
T ss_dssp CSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence 4566666666443 2333444 55678888999999999886
No 20
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=34.85 E-value=55 Score=29.57 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025544 183 ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 183 ~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
++.+.|.+......-=.+..+....|+.|||+..+|+++.|-++.
T Consensus 33 DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~ 77 (330)
T 3hrd_B 33 DGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMV 77 (330)
T ss_dssp TSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTT
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCCCC
Confidence 456888877776644578889999999999999999999998775
No 21
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=34.34 E-value=51 Score=24.43 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=32.6
Q ss_pred EEEecCCcccceeeeeCCeEEEEEeCCC-CcChhhH----HHHHHHHhhcCccCCcEEEE
Q 025544 167 IEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEANN----ELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 167 V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN~----eLi~fLAk~LgVpks~VsIv 221 (251)
|.+.|...- .+.+-++...-|.|+.-+ ..-..|+ +|.++|++.||+++.+|.|.
T Consensus 40 v~~~~~~~~-~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~ 98 (115)
T 2xcz_A 40 TSLQCGVPM-TFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIG 98 (115)
T ss_dssp EEEECSCCC-CBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEECCCce-EECCCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 344555443 233334566666666433 3334454 55667888999999999886
No 22
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.96 E-value=11 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.2
Q ss_pred cccccccc-cCCCCCceeEEE
Q 025544 100 KLEKQFRM-NCIGCGLFVCYR 119 (251)
Q Consensus 100 ~iEkQyR~-~C~~CgLpl~Y~ 119 (251)
.+|++.++ .|..||-||.|.
T Consensus 10 ple~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 10 PLDKPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCCCCEEECTTTCCEEETT
T ss_pred ccCccccchhhcccCCcchHH
Confidence 36776663 599999999874
No 23
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=31.95 E-value=13 Score=30.27 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.4
Q ss_pred cccccccCCCCCceeEEEecC
Q 025544 102 EKQFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 102 EkQyR~~C~~CgLpl~Y~~~~ 122 (251)
-..|++.|++|..+++|-++-
T Consensus 3 ~~~~kllCrkC~~~vC~g~DI 23 (131)
T 4a2v_A 3 MGQKNLLCGKCKAYACSTDDI 23 (131)
T ss_dssp --CCEEEETTTCCEEEEGGGE
T ss_pred CcceEEEccCCCeeEEeccce
Confidence 357999999999999998774
No 24
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=31.94 E-value=28 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhhcCccCCcEEEE
Q 025544 199 ANNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 199 AN~eLi~fLAk~LgVpks~VsIv 221 (251)
--++|.+.|++.||+|...+.+.
T Consensus 22 l~~~l~~~l~~~lg~p~~~v~v~ 44 (63)
T 2x4k_A 22 LVSEVTDAVEKTTGANRQAIHVV 44 (63)
T ss_dssp HHHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHHhCcCcccEEEE
Confidence 35677788999999999988774
No 25
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=31.77 E-value=33 Score=22.99 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcCccCCcEEEEe
Q 025544 201 NELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 201 ~eLi~fLAk~LgVpks~VsIv~ 222 (251)
++|.+.+++.||+|+.+|.|+=
T Consensus 20 ~~it~~~~~~lg~~~~~v~V~i 41 (62)
T 3m20_A 20 ERLTSVAAEIYGMDRSAITILI 41 (62)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEE
Confidence 4677788899999999998873
No 26
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=29.27 E-value=35 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=27.0
Q ss_pred eCCeEEEEEeCCC-CcChhhH----HHHHHHHhhcCccCCcEEEE
Q 025544 182 NADDVRVTVAAPA-ARGEANN----ELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 182 ~~d~L~V~VtApP-~dGKAN~----eLi~fLAk~LgVpks~VsIv 221 (251)
.+...-|.|+.-. .....|+ +|.++|++.||+++.+|.|.
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~ 97 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIH 97 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 3566666666443 2334444 45678888999999999886
No 27
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=28.00 E-value=35 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhcCccCCcEEEEe
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv~ 222 (251)
=++|.+.|++.||+|+.+|.|+=
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V~i 45 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVVII 45 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEE
Confidence 35677888999999999998873
No 28
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=27.65 E-value=38 Score=25.46 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=31.9
Q ss_pred EEEecCCcccceeeeeCCeEEEEEeCCC-CcChhhH----HHHHHHHhhcCccCCcEEEE
Q 025544 167 IEVEDRAQRSAITRVNADDVRVTVAAPA-ARGEANN----ELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 167 V~VkP~Akr~~I~~~~~d~L~V~VtApP-~dGKAN~----eLi~fLAk~LgVpks~VsIv 221 (251)
|.+.|+..- .+.+-.+...-|.|+.-. ..-..|+ +|.++|++.||+++.+|.|.
T Consensus 40 v~~~~~~~~-~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~ 98 (119)
T 2os5_A 40 IEVLAGQRI-THGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIIT 98 (119)
T ss_dssp EEEECSCCC-CBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEECCccE-EEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 444554432 122333556666666443 2333444 55678888999999999886
No 29
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=27.54 E-value=35 Score=23.79 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=18.3
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
-++|.+.|++.||+|..++.|+
T Consensus 21 ~~~l~~~l~~~lgip~~~v~V~ 42 (76)
T 1gyx_A 21 AADITDVIIRHLNSKDSSISIA 42 (76)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCCceEEEE
Confidence 4567788899999999988876
No 30
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=26.87 E-value=1.6e+02 Score=24.04 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=49.2
Q ss_pred eeCCeEEEEEeCCCCcChhhHHHH---HHHHhhcCccCCcEEEEeccCCceeEEEEccCCHHHHHHHHHhhc
Q 025544 181 VNADDVRVTVAAPAARGEANNELL---EFMGKVLSLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAV 249 (251)
Q Consensus 181 ~~~d~L~V~VtApP~dGKAN~eLi---~fLAk~LgVpks~VsIv~G~~SR~K~V~I~gls~e~v~~~L~~~l 249 (251)
.+++.|.|.|+..|+. .-++|- +-|++.|++... -.| -|.-|-.-.+.++|.+.|.+...|++.+
T Consensus 38 l~gn~l~i~itgvpeq--vrkelakeaerl~~efni~v~-y~i-mgsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 38 LSGNRLVIVITGVPEQ--VRKELAKEAERLKAEFNINVQ-YQI-MGSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp EETTEEEEEEESCCHH--HHHHHHHHHHHHHHHHTCEEE-EEE-ECTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred EeCCEEEEEEeCCcHH--HHHHHHHHHHHHHHhcceEEE-EEE-EeCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 4678899999999964 555554 568899997643 233 3667777888889999998888888764
No 31
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.79 E-value=43 Score=22.99 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhcCccCCcEEEEe
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv~ 222 (251)
-++|.+.+++.||+|..+|.++=
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i 43 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRLII 43 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEE
Confidence 45778888999999999998873
No 32
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.62 E-value=42 Score=22.48 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhcCccCCcEEEE
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv 221 (251)
-++|.+.|.+.||+|..++.++
T Consensus 20 ~~~it~~~~~~lg~p~~~v~V~ 41 (65)
T 3ry0_A 20 GEALTAAAHETLGTPVEAVRVI 41 (65)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEE
Confidence 4677888899999999998876
No 33
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.90 E-value=21 Score=24.56 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.7
Q ss_pred ccccCCCCCceeEEEe
Q 025544 105 FRMNCIGCGLFVCYRS 120 (251)
Q Consensus 105 yR~~C~~CgLpl~Y~~ 120 (251)
-|+.|++||+..+|+.
T Consensus 35 dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 35 DRYSCGRCGYTEFKKA 50 (55)
T ss_dssp SEEECTTTCCCEECCC
T ss_pred CEEECCCCCCEEEeCc
Confidence 3889999998877663
No 34
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=23.30 E-value=50 Score=25.01 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=25.7
Q ss_pred CCeEEEEEeC-CCCcChhh----HHHHHHHHhhcCccCCcEEEE
Q 025544 183 ADDVRVTVAA-PAARGEAN----NELLEFMGKVLSLRLSQMTLQ 221 (251)
Q Consensus 183 ~d~L~V~VtA-pP~dGKAN----~eLi~fLAk~LgVpks~VsIv 221 (251)
+..+.|.|+. +...-+.+ ++|.+.|++.||+|+.+|.|.
T Consensus 57 ~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~ 100 (128)
T 1mww_A 57 DDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEIT 100 (128)
T ss_dssp TTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 4556666662 22333334 456667888999999999986
No 35
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=23.02 E-value=24 Score=28.77 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=17.0
Q ss_pred cccccCCCCCceeEEEecC
Q 025544 104 QFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 104 QyR~~C~~CgLpl~Y~~~~ 122 (251)
+|++.|++|..+++|-.+-
T Consensus 10 ~vkllCrkC~~~~C~g~DI 28 (133)
T 3ga3_A 10 LITFLCKNCSVLACSGEDI 28 (133)
T ss_dssp GEEEEETTTCCEEEEGGGC
T ss_pred eEEEEccCCCeeEEeccce
Confidence 5799999999999998774
No 36
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=22.86 E-value=24 Score=28.71 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.5
Q ss_pred cccCCCCCceeEE
Q 025544 106 RMNCIGCGLFVCY 118 (251)
Q Consensus 106 R~~C~~CgLpl~Y 118 (251)
|+.|++||+..+|
T Consensus 138 r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 138 RLYCGKCHSVYKV 150 (152)
T ss_dssp CEEESSSSSCCEE
T ss_pred CcccCCCceEEEe
Confidence 4555555554443
No 37
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.90 E-value=52 Score=23.08 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhcCccCCcEEEEe
Q 025544 200 NNELLEFMGKVLSLRLSQMTLQR 222 (251)
Q Consensus 200 N~eLi~fLAk~LgVpks~VsIv~ 222 (251)
-++|.+.+++.||+|..+|.++=
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i 43 (76)
T 3ej9_A 21 SAGLLRVISEATGEPRENIFFVI 43 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEE
Confidence 46778888999999999998873
No 38
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=21.78 E-value=1.1e+02 Score=30.72 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025544 183 ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 183 ~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
++.+.|.+.+....-=.+..+.+..|+.||||..+|++..|-|+.
T Consensus 469 dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~ 513 (769)
T 1rm6_A 469 DGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSAL 513 (769)
T ss_dssp TCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTT
T ss_pred CCeEEEEECCccCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCC
Confidence 567888888888777789999999999999999999999998864
No 39
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=21.25 E-value=1.1e+02 Score=31.03 Aligned_cols=45 Identities=7% Similarity=0.184 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025544 183 ADDVRVTVAAPAARGEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 183 ~d~L~V~VtApP~dGKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
++.+.|.+.+....-=.+..+.+..|+.||||..+|++..|-|+.
T Consensus 516 DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~ 560 (809)
T 1n62_B 516 TGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDT 560 (809)
T ss_dssp TSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTT
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCC
Confidence 577899998888877789999999999999999999999998864
No 40
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=20.79 E-value=3.8e+02 Score=23.72 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHhhcCccCCcEEEEeccCCc
Q 025544 197 GEANNELLEFMGKVLSLRLSQMTLQRGWNNK 227 (251)
Q Consensus 197 GKAN~eLi~fLAk~LgVpks~VsIv~G~~SR 227 (251)
++.=-+|++-|++.+++..+.+++....+.|
T Consensus 145 p~~Rv~Ll~~~~~f~~v~~~~~~l~p~~n~~ 175 (246)
T 1u2c_A 145 PKQRIDLLNRMQSFSEVELHNMKLVPVVNNR 175 (246)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCEEEECCTTC
T ss_pred HHHHHHHHHHHHHHhccchhheEeeecccch
Confidence 3444578999999999999999999887665
No 41
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=20.35 E-value=29 Score=28.63 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.5
Q ss_pred ccccccCCCCCceeEEEecC
Q 025544 103 KQFRMNCIGCGLFVCYRSEE 122 (251)
Q Consensus 103 kQyR~~C~~CgLpl~Y~~~~ 122 (251)
-+|++.|++|..+++|-.+-
T Consensus 10 s~vkllCrkC~~~~C~g~DI 29 (145)
T 3eqt_A 10 EHVQLLCINCMVAVGHGSDL 29 (145)
T ss_dssp GGCEEEETTTCCEEEEGGGE
T ss_pred hheEEECCCCCeeEEeccce
Confidence 46899999999999998773
Done!