Your job contains 1 sequence.
>025545
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH
FSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKV
LGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGS
QHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQG
IEKRVEVATAA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025545
(251 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV... 488 1.4e-46 1
TAIR|locus:2014711 - symbol:RPL21C "chloroplast ribosomal... 205 1.4e-16 1
DICTYBASE|DDB_G0288799 - symbol:mrpl21 "ribosomal protein... 136 2.9e-09 1
TIGR_CMR|GSU_3236 - symbol:GSU_3236 "ribosomal protein L2... 133 5.9e-09 1
TIGR_CMR|BA_4676 - symbol:BA_4676 "ribosomal protein L21"... 114 8.6e-07 1
TIGR_CMR|SPO_1990 - symbol:SPO_1990 "ribosomal protein L2... 124 1.3e-06 1
TIGR_CMR|CHY_0367 - symbol:CHY_0367 "ribosomal protein L2... 112 1.5e-06 1
TIGR_CMR|CBU_0385 - symbol:CBU_0385 "ribosomal protein L2... 109 3.4e-06 1
TIGR_CMR|ECH_0545 - symbol:ECH_0545 "ribosomal protein L2... 108 4.4e-06 1
TIGR_CMR|DET_1325 - symbol:DET_1325 "ribosomal protein L2... 107 5.7e-06 1
UNIPROTKB|E1BWV6 - symbol:MRPL21 "Uncharacterized protein... 111 7.4e-05 1
TIGR_CMR|CPS_4512 - symbol:CPS_4512 "ribosomal protein L2... 95 0.00014 1
TIGR_CMR|APH_0697 - symbol:APH_0697 "ribosomal protein L2... 94 0.00018 1
UNIPROTKB|F1MSV8 - symbol:MRPL21 "39S ribosomal protein L... 108 0.00027 1
WB|WBGene00023422 - symbol:mrpl-21 species:6239 "Caenorha... 105 0.00027 1
UNIPROTKB|Q2TBS2 - symbol:MRPL21 "39S ribosomal protein L... 106 0.00049 1
ZFIN|ZDB-GENE-061027-183 - symbol:zgc:153377 "zgc:153377"... 107 0.00050 1
UNIPROTKB|Q9KUT0 - symbol:rplU "50S ribosomal protein L21... 90 0.00051 1
TIGR_CMR|VC_0435 - symbol:VC_0435 "ribosomal protein L21"... 90 0.00051 1
FB|FBgn0036853 - symbol:mRpL21 "mitochondrial ribosomal p... 105 0.00057 1
MGI|MGI:2660674 - symbol:Mrpl21 "mitochondrial ribosomal ... 105 0.00064 1
RGD|1310203 - symbol:Mrpl21 "mitochondrial ribosomal prot... 105 0.00064 1
>TAIR|locus:2126699 [details] [associations]
symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
Uniprot:Q8L9A0
Length = 270
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 112/248 (45%), Positives = 137/248 (55%)
Query: 1 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
MA RC LSR A + S+ ++ I G T H ++I + N Y H
Sbjct: 1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSG-TSISHGTVIPNRSLTRNLPWYSH 59
Query: 61 FSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPD-----LGREYTLEEKEAEAAE 115
+ +++ G+ D + REY+ EK EA E
Sbjct: 60 WYRSQDRCFSSNTKDTDEDEESSEGEDDDEEE-GEDFEDSADMEVEREYSPAEKVEEAEE 118
Query: 116 IGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKV 175
IGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L KV
Sbjct: 119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKV 178
Query: 176 LLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRI 235
LLLGS QTIIGRP++PD LD KV+IF GHRQELTKLRI
Sbjct: 179 LLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRI 238
Query: 236 VDIQGIEK 243
DIQGIEK
Sbjct: 239 TDIQGIEK 246
>TAIR|locus:2014711 [details] [associations]
symbol:RPL21C "chloroplast ribosomal protein L21"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0009793 "embryo development
ending in seed dormancy" evidence=IMP] [GO:0010027 "thylakoid
membrane organization" evidence=RCA;IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042742 "defense response to bacterium" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009570 GO:GO:0006412 GO:GO:0009409
GO:GO:0009941 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AC007887 EMBL:Z49787
EMBL:Y15964 EMBL:AY058118 EMBL:AF428363 EMBL:AY116944
IPI:IPI00532845 PIR:S71282 RefSeq:NP_174808.1 UniGene:At.23722
ProteinModelPortal:P51412 SMR:P51412 STRING:P51412 PaxDb:P51412
PRIDE:P51412 EnsemblPlants:AT1G35680.1 GeneID:840472
KEGG:ath:AT1G35680 GeneFarm:195 TAIR:At1g35680 eggNOG:COG0261
HOGENOM:HOG000238965 InParanoid:P51412 KO:K02888 OMA:TNATVHA
PhylomeDB:P51412 ProtClustDB:CLSN2914377 Genevestigator:P51412
GermOnline:AT1G35680 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
Uniprot:P51412
Length = 220
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 46/136 (33%), Positives = 72/136 (52%)
Query: 108 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVN 167
E E E +I V+ + + K E FAV+ +G Q+ V G ++T+RLK V+
Sbjct: 71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130
Query: 168 DKLILNKVLLLGSQHQTIIGRPMVPDXXXXXXXXXXXLDAKVIIFXXXXXXXXXXXXGHR 227
D+++LNKVLL+G++ T IG+P+V + L+ KV++F GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190
Query: 228 QELTKLRIVDIQGIEK 243
Q T++RI I G E+
Sbjct: 191 QPNTRIRITGITGYEE 206
>DICTYBASE|DDB_G0288799 [details] [associations]
symbol:mrpl21 "ribosomal protein L21, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001787 Pfam:PF00829
dictyBase:DDB_G0288799 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000125 eggNOG:COG0261 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 RefSeq:XP_636527.1 ProteinModelPortal:Q54IF0
STRING:Q54IF0 EnsemblProtists:DDB0267021 GeneID:8626812
KEGG:ddi:DDB_G0288799 OMA:FAVVHIS Uniprot:Q54IF0
Length = 172
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXX 196
+FAVV I Q+KV GD I T++++ +V + ++L+KVLL+G++++TIIG+P++ +
Sbjct: 61 SFAVVHISGKQYKVIEGDIIMTDKIQV-DVGEHIVLDKVLLVGTKNETIIGKPIISNFKV 119
Query: 197 XXXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 249
V IF G + T +RI GI K E T
Sbjct: 120 HAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRI---GGIIKGQETTT 169
>TIGR_CMR|GSU_3236 [details] [associations]
symbol:GSU_3236 "ribosomal protein L21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_954277.1 ProteinModelPortal:Q747M9
GeneID:2688294 KEGG:gsu:GSU3236 PATRIC:22029319
BioCyc:GSUL243231:GH27-3214-MONOMER Uniprot:Q747M9
Length = 102
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 33/101 (32%), Positives = 49/101 (48%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+AV++ G Q+KVS GD + E+L+ V D + L VL++G + IG P+VP
Sbjct: 2 YAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGE-TVAIGTPLVPSASVV 59
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
D K+++F GHRQ T L+I I
Sbjct: 60 GRIVDQGKDKKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100
>TIGR_CMR|BA_4676 [details] [associations]
symbol:BA_4676 "ribosomal protein L21" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 RefSeq:NP_846890.1
RefSeq:YP_021324.1 RefSeq:YP_030589.1 ProteinModelPortal:Q81LE6
DNASU:1085870 EnsemblBacteria:EBBACT00000010321
EnsemblBacteria:EBBACT00000015606 EnsemblBacteria:EBBACT00000021517
GeneID:1085870 GeneID:2819827 GeneID:2850867 KEGG:ban:BA_4676
KEGG:bar:GBAA_4676 KEGG:bat:BAS4342 HOGENOM:HOG000036264
OMA:KVTIIKF BioCyc:BANT260799:GJAJ-4397-MONOMER
BioCyc:BANT261594:GJ7F-4545-MONOMER Uniprot:Q81LE6
Length = 102
Score = 114 (45.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+A+++ G Q KV G +I+ E+L E + + +KVL +G ++ + G P+V
Sbjct: 2 YAIIETGGKQIKVEAGQAIYIEKLDV-EAGETVTFDKVLFVGGENVKV-GSPVVEGATVT 59
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKL 233
K+I+F GHRQ TKL
Sbjct: 60 AKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQPYTKL 95
>TIGR_CMR|SPO_1990 [details] [associations]
symbol:SPO_1990 "ribosomal protein L21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR003583 Pfam:PF00829 PROSITE:PS01169
SMART:SM00278 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006412 GO:GO:0006281 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 RefSeq:YP_167225.1
ProteinModelPortal:Q5LRY0 GeneID:3193713 KEGG:sil:SPO1990
PATRIC:23377311 OMA:QDELNGG ProtClustDB:PRK12278 Uniprot:Q5LRY0
Length = 193
Score = 124 (48.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
FAV++ G Q+KV GD + E+L + +K+ N VL+LG ++G P+V
Sbjct: 2 FAVLKTGGKQYKVQAGDVLRVEKLA-ADAGEKVQFNDVLMLGGD-APVVGAPLVDGAAVQ 59
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXX-GHRQELTKLRIVDI--QGIEKR-VEVAT 249
K+I F GHRQ+LT +RI +I G +K V+ AT
Sbjct: 60 AEVIDQIKGEKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEILTSGADKTGVKAAT 115
>TIGR_CMR|CHY_0367 [details] [associations]
symbol:CHY_0367 "ribosomal protein L21" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 HOGENOM:HOG000036264 OMA:KVTIIKF
RefSeq:YP_359230.1 ProteinModelPortal:Q3AF54 STRING:Q3AF54
GeneID:3728444 KEGG:chy:CHY_0367 PATRIC:21273895
BioCyc:CHYD246194:GJCN-368-MONOMER Uniprot:Q3AF54
Length = 103
Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/102 (27%), Positives = 44/102 (43%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+A++Q G Q+KV+ GD IF E+L E + +N+VL + G P V
Sbjct: 2 YAIIQTGGKQYKVAEGDKIFVEKLN-AEPGSIVTINEVLAVVKDGSIKAGNPYVEGAKVN 60
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 239
K+I+F GHRQ T++ + I+
Sbjct: 61 LKVVRHGKGRKIIVFKYKPKKNYRRKYGHRQPFTEVIVEKIE 102
>TIGR_CMR|CBU_0385 [details] [associations]
symbol:CBU_0385 "ribosomal protein L21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_819424.2 ProteinModelPortal:Q83EE0 SMR:Q83EE0
GeneID:1208268 KEGG:cbu:CBU_0385 PATRIC:17929467
BioCyc:CBUR227377:GJ7S-388-MONOMER Uniprot:Q83EE0
Length = 115
Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+A+++ G Q++V+ G + E+L +V + + VL++ + + IG P V D
Sbjct: 2 YAIIKTGGKQYRVTEGQMLKVEKLAQ-DVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVT 60
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIEKRVEVAT 249
AK+ I GHRQ+ T ++I +I + + EV T
Sbjct: 61 AEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIALGKAKKEVKT 112
>TIGR_CMR|ECH_0545 [details] [associations]
symbol:ECH_0545 "ribosomal protein L21" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 OMA:KVTIIKF
RefSeq:YP_507358.1 ProteinModelPortal:Q2GGS5 STRING:Q2GGS5
GeneID:3928066 KEGG:ech:ECH_0545 PATRIC:20576556
BioCyc:ECHA205920:GJNR-547-MONOMER Uniprot:Q2GGS5
Length = 102
Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
FA+V+ G Q+KV D I E+L V +++ L+KV+ L + I+ +
Sbjct: 2 FAIVETGGKQYKVKEQDVIKIEKLN-ASVGEEVTLDKVIALADVNNNIV---FTHNAIVT 57
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQGIE 242
+ K+I+F GHRQ +T LR+ I +E
Sbjct: 58 ASVLEQCRNDKIIVFKKKRRKNYRRKNGHRQYMTVLRVTKINNME 102
>TIGR_CMR|DET_1325 [details] [associations]
symbol:DET_1325 "ribosomal protein L21" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
HOGENOM:HOG000036264 OMA:KVTIIKF RefSeq:YP_182036.1
ProteinModelPortal:Q3Z6W3 STRING:Q3Z6W3 GeneID:3229420
KEGG:det:DET1325 PATRIC:21609679
BioCyc:DETH243164:GJNF-1326-MONOMER Uniprot:Q3Z6W3
Length = 132
Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/101 (27%), Positives = 41/101 (40%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+A+++ G Q+KV+ G + + E D + L+KVL+L IG P VP
Sbjct: 7 YAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKVT 65
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
KV + GHRQ T L I +I
Sbjct: 66 ATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQLYTVLTIGEI 106
>UNIPROTKB|E1BWV6 [details] [associations]
symbol:MRPL21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001787
Pfam:PF00829 GO:GO:0005739 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349 CTD:219927
OMA:TILRINT GeneTree:ENSGT00390000005535 EMBL:AADN02040052
IPI:IPI00600288 RefSeq:NP_001186447.1 UniGene:Gga.3185
Ensembl:ENSGALT00000006955 GeneID:423000 KEGG:gga:423000
NextBio:20825539 Uniprot:E1BWV6
Length = 189
Score = 111 (44.1 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV S Q+K+++ D I + + E D++ + KVLL+G+ T+IGRP++
Sbjct: 75 QYGRLFAVVHFASKQYKITSEDLIMMDNVLQAECGDRIRMEKVLLVGADDFTLIGRPLL 133
>TIGR_CMR|CPS_4512 [details] [associations]
symbol:CPS_4512 "ribosomal protein L21" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 OMA:KVTIIKF
RefSeq:YP_271160.1 ProteinModelPortal:Q47VL2 SMR:Q47VL2
STRING:Q47VL2 PRIDE:Q47VL2 GeneID:3523251 KEGG:cps:CPS_4512
PATRIC:21471847 BioCyc:CPSY167879:GI48-4521-MONOMER Uniprot:Q47VL2
Length = 103
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+AV Q G Q +V+ G ++ E+L+ EV + + VL++ + +G P V
Sbjct: 2 YAVFQSGGKQHRVTEGQTVRLEKLEL-EVGATVEFDNVLMIANGDNINVGAPYVAGGKVV 60
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQG 240
K+ I GHRQ T+++I I G
Sbjct: 61 AEVVTQARAPKITIVKFKRRKHSRKQAGHRQWFTEVKITGING 103
>TIGR_CMR|APH_0697 [details] [associations]
symbol:APH_0697 "ribosomal protein L21" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0019843 HOGENOM:HOG000036265
eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
RefSeq:YP_505279.1 ProteinModelPortal:Q2GK22 STRING:Q2GK22
GeneID:3930292 KEGG:aph:APH_0697 PATRIC:20950080 OMA:KRRKRYQ
ProtClustDB:PRK05573 BioCyc:APHA212042:GHPM-716-MONOMER
Uniprot:Q2GK22
Length = 99
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 27/102 (26%), Positives = 42/102 (41%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
FAVV+ G Q+KV D I E LK + +K++L + + G
Sbjct: 2 FAVVETGGKQYKVKEQDVIKVELLK-AGIGEKVLLKSLATFNNDGS---GSFSASSGSVS 57
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDIQ 239
K+I+F GHRQ +T LR+V+++
Sbjct: 58 AEVVAHCRSDKIIVFKKRRRKNYRRKNGHRQNMTVLRVVEVR 99
>UNIPROTKB|F1MSV8 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 IPI:IPI00694162 UniGene:Bt.20025 OMA:TILRINT
GeneTree:ENSGT00390000005535 EMBL:DAAA02063651
Ensembl:ENSBTAT00000005688 Uniprot:F1MSV8
Length = 209
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV SHQ+KV++ D I E +++ L KVLL+G+ T++GRP++
Sbjct: 95 QYGRLFAVVHFASHQWKVTSEDLILIENKLDIACGERIRLEKVLLVGADDFTLLGRPLL 153
>WB|WBGene00023422 [details] [associations]
symbol:mrpl-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR001787 Pfam:PF00829
GO:GO:0040010 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:Z46937 PANTHER:PTHR21349 eggNOG:NOG314874
GeneTree:ENSGT00390000005535 RefSeq:NP_001022585.1
ProteinModelPortal:Q6A575 SMR:Q6A575 STRING:Q6A575 PaxDb:Q6A575
EnsemblMetazoa:F43C1.6.1 EnsemblMetazoa:F43C1.6.2 GeneID:3565999
KEGG:cel:CELE_F43C1.6 UCSC:F43C1.6.1 CTD:3565999 WormBase:F43C1.6
HOGENOM:HOG000209907 InParanoid:Q6A575 OMA:WPPNIGD NextBio:958679
Uniprot:Q6A575
Length = 171
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 127 SDRVFK-KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTI 185
SD V + K + FAVV + Q+KVS+GD I E V D++ L KVL++G + ++
Sbjct: 50 SDEVNEEKRQRLFAVVYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSL 109
Query: 186 IGRPMV 191
GRP++
Sbjct: 110 FGRPLL 115
>UNIPROTKB|Q2TBS2 [details] [associations]
symbol:MRPL21 "39S ribosomal protein L21, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
eggNOG:NOG314874 EMBL:BC109734 IPI:IPI00694162
RefSeq:NP_001069982.1 UniGene:Bt.20025 ProteinModelPortal:Q2TBS2
STRING:Q2TBS2 PRIDE:Q2TBS2 GeneID:618609 KEGG:bta:618609 CTD:219927
HOGENOM:HOG000022586 HOVERGEN:HBG083573 InParanoid:Q2TBS2
OrthoDB:EOG4FN4K1 NextBio:20901273 Uniprot:Q2TBS2
Length = 209
Score = 106 (42.4 bits), Expect = 0.00049, P = 0.00049
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV SHQ+KV++ D I E +++ + KVLL+G+ T++GRP++
Sbjct: 95 QYGRLFAVVHFASHQWKVTSEDLILIENKLDIACGERIRMEKVLLVGADDFTLLGRPLL 153
>ZFIN|ZDB-GENE-061027-183 [details] [associations]
symbol:zgc:153377 "zgc:153377" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR001787
Pfam:PF00829 ZFIN:ZDB-GENE-061027-183 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR21349
GeneTree:ENSGT00390000005535 EMBL:CABZ01057360 IPI:IPI00635460
Ensembl:ENSDART00000127725 ArrayExpress:F1QJW4 Bgee:F1QJW4
Uniprot:F1QJW4
Length = 234
Score = 107 (42.7 bits), Expect = 0.00050, P = 0.00050
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV + Q+KV+N D I E E D++ + KVLL+G T++G+P++
Sbjct: 120 QYGRLFAVVHFAARQWKVTNEDLILIENHLDAECGDRIRMEKVLLVGGSDFTLVGKPLL 178
>UNIPROTKB|Q9KUT0 [details] [associations]
symbol:rplU "50S ribosomal protein L21" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 OMA:KVTIIKF PIR:B82322
RefSeq:NP_230089.1 ProteinModelPortal:Q9KUT0 SMR:Q9KUT0
PRIDE:Q9KUT0 DNASU:2615696 GeneID:2615696 KEGG:vch:VC0435
PATRIC:20079949 Uniprot:Q9KUT0
Length = 103
Score = 90 (36.7 bits), Expect = 0.00051, P = 0.00051
Identities = 28/101 (27%), Positives = 42/101 (41%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+AV Q G Q +VS G ++ E+L E + +KVLL+ + +G P+V
Sbjct: 2 YAVFQSGGKQHRVSEGQTLRLEKLDV-ETGATVEFDKVLLVANGEDIKVGAPLVEGGKVV 60
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
KV I GHRQ T+++I I
Sbjct: 61 AEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGI 101
>TIGR_CMR|VC_0435 [details] [associations]
symbol:VC_0435 "ribosomal protein L21" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
ProtClustDB:PRK05573 OMA:KVTIIKF PIR:B82322 RefSeq:NP_230089.1
ProteinModelPortal:Q9KUT0 SMR:Q9KUT0 PRIDE:Q9KUT0 DNASU:2615696
GeneID:2615696 KEGG:vch:VC0435 PATRIC:20079949 Uniprot:Q9KUT0
Length = 103
Score = 90 (36.7 bits), Expect = 0.00051, P = 0.00051
Identities = 28/101 (27%), Positives = 42/101 (41%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDXXXX 197
+AV Q G Q +VS G ++ E+L E + +KVLL+ + +G P+V
Sbjct: 2 YAVFQSGGKQHRVSEGQTLRLEKLDV-ETGATVEFDKVLLVANGEDIKVGAPLVEGGKVV 60
Query: 198 XXXXXXXLDAKVIIFXXXXXXXXXXXXGHRQELTKLRIVDI 238
KV I GHRQ T+++I I
Sbjct: 61 AEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGI 101
>FB|FBgn0036853 [details] [associations]
symbol:mRpL21 "mitochondrial ribosomal protein L21"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 EMBL:AE014296
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 CTD:219927
GeneTree:ENSGT00390000005535 FlyBase:FBgn0036853 EMBL:BT128761
RefSeq:NP_649095.2 UniGene:Dm.5837 SMR:Q9VVX4 STRING:Q9VVX4
EnsemblMetazoa:FBtr0075022 EnsemblMetazoa:FBtr0333224 GeneID:40091
KEGG:dme:Dmel_CG9730 UCSC:CG9730-RA InParanoid:Q9VVX4 OMA:KDQQKEC
GenomeRNAi:40091 NextBio:816945 Uniprot:Q9VVX4
Length = 201
Score = 105 (42.0 bits), Expect = 0.00057, P = 0.00057
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
FAVV + QFKV+ GD I E + D++ L+KVLL G++ T++GRP++
Sbjct: 79 FAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLVGRPIL 132
>MGI|MGI:2660674 [details] [associations]
symbol:Mrpl21 "mitochondrial ribosomal protein L21"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001787 Pfam:PF00829 MGI:MGI:2660674 GO:GO:0005739
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 eggNOG:NOG314874 CTD:219927
HOGENOM:HOG000022586 HOVERGEN:HBG083573 OrthoDB:EOG4FN4K1
OMA:TILRINT EMBL:AK003285 EMBL:AK012784 EMBL:AK020739 EMBL:BC028768
IPI:IPI00133965 IPI:IPI00134112 RefSeq:NP_758456.2 UniGene:Mm.74084
ProteinModelPortal:Q9D1N9 SMR:Q9D1N9 STRING:Q9D1N9
PhosphoSite:Q9D1N9 PaxDb:Q9D1N9 PRIDE:Q9D1N9 DNASU:353242
Ensembl:ENSMUST00000025743 Ensembl:ENSMUST00000025745 GeneID:353242
KEGG:mmu:353242 GeneTree:ENSGT00390000005535 NextBio:400369
Bgee:Q9D1N9 CleanEx:MM_MRPL21 Genevestigator:Q9D1N9
GermOnline:ENSMUSG00000024829 Uniprot:Q9D1N9
Length = 209
Score = 105 (42.0 bits), Expect = 0.00064, P = 0.00064
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV SHQ+KV+ D I E + +++ L KVLL+G+ + T++G+P++
Sbjct: 95 QYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLVGADNFTLLGKPLL 153
>RGD|1310203 [details] [associations]
symbol:Mrpl21 "mitochondrial ribosomal protein L21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001787 Pfam:PF00829 RGD:1310203
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:CH473953 PANTHER:PTHR21349 CTD:219927
OMA:TILRINT GeneTree:ENSGT00390000005535 IPI:IPI00200368
RefSeq:NP_001101037.1 UniGene:Rn.22778 Ensembl:ENSRNOT00000018848
GeneID:309140 KEGG:rno:309140 UCSC:RGD:1310203 NextBio:660230
Uniprot:D3ZMR9
Length = 209
Score = 105 (42.0 bits), Expect = 0.00064, P = 0.00064
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 133 KYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMV 191
+Y FAVV SHQ+KV+ D I E + +++ L KVLL+G+ + T++G+P++
Sbjct: 95 QYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLVGTDNFTLLGKPLL 153
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 251 202 0.00090 111 3 11 22 0.47 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 588 (63 KB)
Total size of DFA: 156 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.52u 0.19s 15.71t Elapsed: 00:00:00
Total cpu time: 15.52u 0.19s 15.71t Elapsed: 00:00:00
Start: Mon May 20 22:26:49 2013 End: Mon May 20 22:26:49 2013