Query 025545
Match_columns 251
No_of_seqs 129 out of 1112
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_R 50S ribosomal protein L 100.0 9.1E-43 3.1E-47 277.3 13.1 102 137-239 1-102 (103)
2 3v2d_V 50S ribosomal protein L 100.0 8.6E-42 2.9E-46 271.1 13.5 101 137-240 1-101 (101)
3 2zjr_O 50S ribosomal protein L 100.0 3.3E-41 1.1E-45 267.1 4.2 99 137-239 1-99 (100)
4 3bbo_T Ribosomal protein L21; 100.0 3.4E-41 1.1E-45 303.0 -1.7 114 131-244 118-231 (257)
5 2ivw_A PILP pilot protein; lip 65.0 6.1 0.00021 31.5 3.8 28 132-159 34-61 (113)
6 2lc4_A PILP protein; type IV p 64.9 6.3 0.00022 31.3 3.9 29 131-159 37-65 (111)
7 2ayu_A Nucleosome assembly pro 64.6 1.4 4.7E-05 42.1 0.0 9 54-62 352-361 (417)
8 2y4x_A PILP protein; biosynthe 64.3 6.4 0.00022 30.2 3.7 27 133-159 32-58 (93)
9 2ozj_A Cupin 2, conserved barr 60.5 9.4 0.00032 27.7 4.0 21 139-159 69-89 (114)
10 4i4a_A Similar to unknown prot 57.7 12 0.00041 27.6 4.2 21 140-160 66-86 (128)
11 2byk_A Chrac-16; nucleosome sl 55.4 2.5 8.5E-05 34.7 0.0 7 9-15 56-62 (140)
12 3lwc_A Uncharacterized protein 54.2 14 0.00046 28.3 4.1 22 139-160 70-91 (119)
13 1v70_A Probable antibiotics sy 54.2 15 0.00051 25.3 4.0 20 140-159 61-80 (105)
14 2zd7_A VPS75, vacuolar protein 53.2 1 3.4E-05 40.3 -2.9 10 54-63 208-218 (264)
15 2arc_A ARAC, arabinose operon 53.0 14 0.00049 27.7 4.0 21 139-159 49-69 (164)
16 2opk_A Hypothetical protein; p 51.4 8.6 0.00029 28.7 2.5 21 139-159 64-86 (112)
17 4av2_M PILP protein, type IV p 51.3 13 0.00044 31.5 3.8 28 132-159 102-129 (181)
18 3fjs_A Uncharacterized protein 51.2 13 0.00045 27.6 3.5 20 141-160 69-88 (114)
19 1pyv_A ATP synthase beta chain 50.6 8.2 0.00028 26.8 2.0 16 1-16 1-16 (54)
20 3d82_A Cupin 2, conserved barr 50.3 11 0.00037 26.3 2.7 21 140-160 62-82 (102)
21 1o5u_A Novel thermotoga mariti 50.2 16 0.00055 27.3 3.8 21 140-160 61-82 (101)
22 2gu9_A Tetracenomycin polyketi 50.0 15 0.00051 25.9 3.5 19 141-159 57-75 (113)
23 3cew_A Uncharacterized cupin p 49.6 15 0.00053 27.1 3.7 21 139-159 59-79 (125)
24 2pyt_A Ethanolamine utilizatio 48.8 19 0.00066 28.1 4.2 22 139-160 86-107 (133)
25 2pfw_A Cupin 2, conserved barr 48.3 20 0.00068 25.8 4.0 20 140-159 66-85 (116)
26 1yhf_A Hypothetical protein SP 47.9 22 0.00075 25.5 4.2 20 140-159 72-91 (115)
27 4axo_A EUTQ, ethanolamine util 46.1 21 0.00073 29.1 4.2 21 140-160 96-116 (151)
28 3l2h_A Putative sugar phosphat 45.1 22 0.00074 27.6 4.0 20 141-160 81-100 (162)
29 2wg5_A General control protein 45.1 9.8 0.00034 29.5 2.0 34 138-174 51-85 (109)
30 3kgz_A Cupin 2 conserved barre 44.1 24 0.00081 28.3 4.2 22 139-160 75-96 (156)
31 1o4t_A Putative oxalate decarb 43.2 22 0.00074 27.0 3.7 20 140-159 90-109 (133)
32 3ibm_A Cupin 2, conserved barr 42.8 24 0.00081 28.3 4.0 21 140-160 88-108 (167)
33 4h7l_A Uncharacterized protein 42.8 12 0.00042 31.1 2.3 19 141-159 81-99 (157)
34 2i45_A Hypothetical protein; n 41.6 20 0.00067 25.7 3.0 20 140-159 60-80 (107)
35 2vpv_A Protein MIF2, MIF2P; nu 41.3 27 0.00094 29.0 4.2 20 141-160 123-142 (166)
36 2o8q_A Hypothetical protein; c 40.9 30 0.001 25.7 4.0 20 140-159 76-96 (134)
37 4e2g_A Cupin 2 conserved barre 40.7 24 0.00083 25.8 3.5 20 140-159 73-92 (126)
38 2b8m_A Hypothetical protein MJ 39.6 19 0.00065 26.2 2.7 20 140-159 59-79 (117)
39 3h8u_A Uncharacterized conserv 39.1 20 0.00068 26.3 2.8 21 139-159 71-92 (125)
40 1y9q_A Transcriptional regulat 37.6 30 0.001 27.5 3.8 20 140-159 138-157 (192)
41 3ddy_A Lumazine protein, LUMP; 36.8 48 0.0016 28.1 5.1 89 138-230 49-138 (186)
42 3jzv_A Uncharacterized protein 36.4 34 0.0012 27.7 4.0 20 140-159 85-104 (166)
43 4e2q_A Ureidoglycine aminohydr 36.3 33 0.0011 30.6 4.2 22 139-160 218-239 (266)
44 1sef_A Conserved hypothetical 35.3 36 0.0012 29.2 4.2 20 140-159 215-234 (274)
45 3ht1_A REMF protein; cupin fol 34.4 28 0.00096 25.8 3.0 20 140-159 71-92 (145)
46 3h43_A Proteasome-activating n 34.3 22 0.00074 26.6 2.3 36 136-174 30-66 (85)
47 3bcw_A Uncharacterized protein 34.2 33 0.0011 26.6 3.4 22 139-160 79-101 (123)
48 3i7d_A Sugar phosphate isomera 33.6 41 0.0014 26.7 4.0 21 140-160 77-97 (163)
49 1vj2_A Novel manganese-contain 33.1 27 0.00094 26.0 2.7 20 140-159 80-99 (126)
50 4aco_A Centromere DNA-binding 32.2 9.6 0.00033 39.9 0.0 11 194-204 850-860 (956)
51 2q30_A Uncharacterized protein 31.7 21 0.00072 25.1 1.8 19 141-159 68-87 (110)
52 4gs3_A Single-stranded DNA-bin 31.4 1.1E+02 0.0037 23.8 6.0 41 202-242 65-106 (107)
53 1rc6_A Hypothetical protein YL 30.7 32 0.0011 29.1 3.1 20 140-159 212-231 (261)
54 3rns_A Cupin 2 conserved barre 30.6 41 0.0014 28.0 3.7 21 140-160 185-205 (227)
55 1sfn_A Conserved hypothetical 29.8 51 0.0017 27.9 4.2 20 140-159 198-217 (246)
56 2fqp_A Hypothetical protein BP 29.2 48 0.0017 23.4 3.4 21 139-159 50-72 (97)
57 3m9b_A Proteasome-associated A 28.5 15 0.0005 33.1 0.6 38 134-174 108-145 (251)
58 2bnm_A Epoxidase; oxidoreducta 28.1 57 0.002 25.8 4.0 19 141-159 153-175 (198)
59 3h7j_A Bacilysin biosynthesis 28.0 54 0.0018 27.5 4.0 22 139-160 177-198 (243)
60 2wfw_A ARC; ATP-binding protei 27.6 24 0.00083 29.6 1.7 39 137-178 20-58 (153)
61 2f4p_A Hypothetical protein TM 26.9 46 0.0016 25.8 3.2 20 140-159 80-100 (147)
62 2jtx_A Transcription initiatio 26.8 9.1 0.00031 30.5 -1.0 10 104-113 85-94 (106)
63 1lr5_A Auxin binding protein 1 26.1 56 0.0019 25.3 3.5 19 141-159 74-101 (163)
64 1b5f_B Protein (cardosin A); h 25.8 43 0.0015 23.7 2.6 55 139-197 16-73 (87)
65 3ay5_A Cyclin-D1-binding prote 25.4 24 0.00082 32.6 1.4 9 103-111 232-240 (360)
66 3oss_C Type 2 secretion system 24.6 48 0.0017 24.0 2.6 21 136-156 19-39 (68)
67 2oa2_A BH2720 protein; 1017534 23.9 46 0.0016 25.5 2.6 19 141-159 77-101 (148)
68 3a35_A Lumazine protein, LUMP; 23.9 66 0.0023 27.3 3.8 87 139-229 50-137 (190)
69 1y3t_A Hypothetical protein YX 22.9 75 0.0026 27.2 4.0 20 141-160 252-271 (337)
70 1rc6_A Hypothetical protein YL 22.0 72 0.0025 26.9 3.7 21 139-159 92-112 (261)
71 3rns_A Cupin 2 conserved barre 21.9 62 0.0021 26.9 3.2 20 140-159 69-88 (227)
72 1nh2_C Transcription initiatio 21.3 23 0.00077 26.9 0.3 14 138-151 57-70 (79)
No 1
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=9.1e-43 Score=277.26 Aligned_cols=102 Identities=34% Similarity=0.566 Sum_probs=100.6
Q ss_pred eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 216 (251)
Q Consensus 137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR 216 (251)
|||||++|||||||++||+|.||+|. +++|++|+|++|||+++++++.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 79 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR 79 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence 99999999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCccCcceEEEEceEe
Q 025545 217 RKNYRRTKGHRQELTKLRIVDIQ 239 (251)
Q Consensus 217 RK~yrRk~GHRQ~yTrLRI~eI~ 239 (251)
||+|||++||||+||+|+|++|.
T Consensus 80 rK~yrrk~GHRQ~~T~l~I~~I~ 102 (103)
T 3r8s_R 80 RKHYRKQQGHRQWFTDVKITGIS 102 (103)
T ss_dssp TTTEEEEEEECCEEEEEEEEEEE
T ss_pred CCCccCCCcccCCeEEEEEEEEE
Confidence 99999999999999999999996
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=8.6e-42 Score=271.07 Aligned_cols=101 Identities=41% Similarity=0.634 Sum_probs=97.7
Q ss_pred eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 216 (251)
Q Consensus 137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR 216 (251)
|||||++|||||||++||+|.||+|+ +++|++|+|+ |||+++++ +.+|+|+|++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 77 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA 77 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence 99999999999999999999999998 8999999999 99998654 899999999999999999999999999999999
Q ss_pred CCCceeccCccCcceEEEEceEec
Q 025545 217 RKNYRRTKGHRQELTKLRIVDIQG 240 (251)
Q Consensus 217 RK~yrRk~GHRQ~yTrLRI~eI~~ 240 (251)
||+|||++||||+||+|+|++|.+
T Consensus 78 rK~yrrk~GHRQ~~T~l~I~~I~g 101 (101)
T 3v2d_V 78 KVQYRRKKGHRQPYTELLIKEIRG 101 (101)
T ss_dssp TTTEEEEEEECCEEEEEEEEEECC
T ss_pred CCCcCCCCcccCCeEEEEEEEEeC
Confidence 999999999999999999999964
No 3
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=100.00 E-value=3.3e-41 Score=267.09 Aligned_cols=99 Identities=41% Similarity=0.629 Sum_probs=92.7
Q ss_pred eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEEEEEecC
Q 025545 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVIIFKKKR 216 (251)
Q Consensus 137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KViVfK~KR 216 (251)
|||||++|||||||++||+|.||+|+ +++|++|+|+ |||+++ +++.+|+| |++|+|+|+|++|+|++|+++|||||
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr 76 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS 76 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence 89999999999999999999999998 8999999999 999999 89999999 99999999999999999999999999
Q ss_pred CCCceeccCccCcceEEEEceEe
Q 025545 217 RKNYRRTKGHRQELTKLRIVDIQ 239 (251)
Q Consensus 217 RK~yrRk~GHRQ~yTrLRI~eI~ 239 (251)
||+|||++||||+||+|+|++|.
T Consensus 77 rK~yrrk~GHRQ~~T~l~I~~I~ 99 (100)
T 2zjr_O 77 GVQYRRRTGHRQNFTAIKILGIQ 99 (100)
T ss_dssp SSCCEEEEEECCBEEEEECCCC-
T ss_pred CCCCcCCCCccCCcEEEEEEEEE
Confidence 99999999999999999999986
No 4
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.4e-41 Score=303.02 Aligned_cols=114 Identities=55% Similarity=0.810 Sum_probs=102.3
Q ss_pred cccCCCeEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCCcEEEEEEEeecCCceEE
Q 025545 131 FKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVVEEHALDAKVI 210 (251)
Q Consensus 131 ~k~~~~mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~a~V~AtVleh~rg~KVi 210 (251)
.+.+..|||||++|||||||++||+|.|++|+.+++|++|.|++|||||++++++||+|||++++|+|+|++|+|++||+
T Consensus 118 ~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIi 197 (257)
T 3bbo_T 118 PPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVI 197 (257)
T ss_dssp ------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCC
T ss_pred CCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEE
Confidence 45677899999999999999999999999998679999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceeccCccCcceEEEEceEecccch
Q 025545 211 IFKKKRRKNYRRTKGHRQELTKLRIVDIQGIEKR 244 (251)
Q Consensus 211 VfK~KRRK~yrRk~GHRQ~yTrLRI~eI~~i~~~ 244 (251)
||||||||||||++||||+||+|||++|.+.+.+
T Consensus 198 VFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~ 231 (257)
T 3bbo_T 198 VFKYKKKKNYRRNIGHRQPITRIKITGITGYEDY 231 (257)
T ss_dssp EEECCTTTTCCEEECCCCCCCCCCCCCCCC----
T ss_pred EEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCC
Confidence 9999999999999999999999999999875443
No 5
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=65.01 E-value=6.1 Score=31.52 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.8
Q ss_pred ccCCCeEEEEEECCEEEEEeCCCEEEec
Q 025545 132 KKYEPAFAVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 132 k~~~~mYAIVeigGKQYKV~~GD~I~Ve 159 (251)
......+|+|+..|+=|+|.+|++|=.+
T Consensus 34 ~~~~~~~ALV~~dG~vyrVk~G~yiG~N 61 (113)
T 2ivw_A 34 KSGQKVSGFIEAEGYVYTVGVGNYLGQN 61 (113)
T ss_dssp ECSSSEEEEEEETTEEEEECSSEEETTT
T ss_pred ccCCeEEEEEEeCCcEEEEccCCEeccC
Confidence 3457799999999999999999998444
No 6
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=64.90 E-value=6.3 Score=31.34 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred cccCCCeEEEEEECCEEEEEeCCCEEEec
Q 025545 131 FKKYEPAFAVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 131 ~k~~~~mYAIVeigGKQYKV~~GD~I~Ve 159 (251)
+.....++|+|+..|+=|+|.+|++|-.+
T Consensus 37 l~~~~~~~ALV~~dG~vyrVk~G~ylG~n 65 (111)
T 2lc4_A 37 LSNAQGTFALVKGAGGVHRVRVGDYLGRN 65 (111)
T ss_dssp EEETTEEEEEEEETTEEEEEETTCEETTT
T ss_pred EccCCeEEEEEEeCCcEEEEccCCEeccC
Confidence 33457799999999999999999998544
No 7
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=64.58 E-value=1.4 Score=42.13 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=4.6
Q ss_pred ccccc-ceee
Q 025545 54 NWSHY-RHFS 62 (251)
Q Consensus 54 ~~~~~-~~~~ 62 (251)
+||+. -||-
T Consensus 352 IiP~AV~yft 361 (417)
T 2ayu_A 352 LIPRAVDWFT 361 (417)
T ss_dssp TTTTHHHHHH
T ss_pred ccccHHHHhc
Confidence 56743 3554
No 8
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=64.27 E-value=6.4 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.4
Q ss_pred cCCCeEEEEEECCEEEEEeCCCEEEec
Q 025545 133 KYEPAFAVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 133 ~~~~mYAIVeigGKQYKV~~GD~I~Ve 159 (251)
....++|+|+..|+=|+|..|++|=.+
T Consensus 32 ~~~~~~ALV~~dg~v~~V~~G~yiG~n 58 (93)
T 2y4x_A 32 NAQGTFALVKGAGGVHRVRVGDYLGRN 58 (93)
T ss_dssp ETTEEEEEEEETTEEEEECTTCEETTT
T ss_pred cCCeEEEEEEeCCCEEEEccCCEeccC
Confidence 457799999999999999999998544
No 9
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=60.54 E-value=9.4 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEECCEEEEEeCCCEEEec
Q 025545 139 AVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Ve 159 (251)
+.+.++|+.|.+.+||.+.++
T Consensus 69 ~~~~i~~~~~~l~~Gd~i~i~ 89 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLMVP 89 (114)
T ss_dssp EEEEETTEEEEECTTCEEEEC
T ss_pred EEEEECCEEEEecCCCEEEEC
Confidence 346789999999999999998
No 10
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=57.75 E-value=12 Score=27.58 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.4
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 66 ~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 66 IIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCcEEEECC
Confidence 456899999999999999983
No 11
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=55.37 E-value=2.5 Score=34.69 Aligned_cols=7 Identities=29% Similarity=0.074 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 025545 9 VLSRHAA 15 (251)
Q Consensus 9 ~~~~~~~ 15 (251)
.|+.+|.
T Consensus 56 ~Lt~~A~ 62 (140)
T 2byk_A 56 HLAGAAY 62 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 12
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=54.23 E-value=14 Score=28.33 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=18.8
Q ss_pred EEEEECCEEEEEeCCCEEEecc
Q 025545 139 AVVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Vek 160 (251)
+.+.++|+.|.+.+||.+.++.
T Consensus 70 ~~~~~~g~~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 70 LSVSTDGETVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3466799999999999999984
No 13
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=54.18 E-value=15 Score=25.25 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.4
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip 80 (105)
T 1v70_A 61 VVRVGEEEALLAPGMAAFAP 80 (105)
T ss_dssp EEEETTEEEEECTTCEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 36788999999999999987
No 14
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=53.17 E-value=1 Score=40.26 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=5.5
Q ss_pred cccc-cceeec
Q 025545 54 NWSH-YRHFSS 63 (251)
Q Consensus 54 ~~~~-~~~~~~ 63 (251)
+||+ -.||.-
T Consensus 208 I~P~al~yf~g 218 (264)
T 2zd7_A 208 IYPFCVKYYAE 218 (264)
T ss_dssp HHHHHHHHHHH
T ss_pred hccCHHHHhcc
Confidence 5773 346753
No 15
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=52.96 E-value=14 Score=27.74 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEeCCCEEEec
Q 025545 139 AVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Ve 159 (251)
+.+.++|+.|.+.+||.+.++
T Consensus 49 ~~~~i~~~~~~l~~Gd~~~i~ 69 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFP 69 (164)
T ss_dssp EEEEETTEEEEECTTCEEEEC
T ss_pred EEEEECCEEEEecCCeEEEEc
Confidence 456789999999999999998
No 16
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=51.38 E-value=8.6 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=19.1
Q ss_pred EEEEECCEE--EEEeCCCEEEec
Q 025545 139 AVVQIGSHQ--FKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigGKQ--YKV~~GD~I~Ve 159 (251)
|.+.++|+. |.+.+||.+.++
T Consensus 64 ~~l~~~~~~~~~~l~~Gd~i~ip 86 (112)
T 2opk_A 64 AGIECEGDTAPRVMRPGDWLHVP 86 (112)
T ss_dssp EEEEETTCSSCEEECTTEEEEEC
T ss_pred EEEEECCEEEEEEECCCCEEEEC
Confidence 567899999 999999999998
No 17
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=51.31 E-value=13 Score=31.51 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=24.0
Q ss_pred ccCCCeEEEEEECCEEEEEeCCCEEEec
Q 025545 132 KKYEPAFAVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 132 k~~~~mYAIVeigGKQYKV~~GD~I~Ve 159 (251)
.....++|+|+..|+=|+|..|++|=.+
T Consensus 102 ~~~~~~~alv~~dg~v~~V~~G~ylG~n 129 (181)
T 4av2_M 102 KSGQKVSGFIEAEGYVYTVGVGNYLGQN 129 (181)
T ss_dssp CSSSCCEEEEEETTEEEEECSSEEETTT
T ss_pred EeCCEEEEEEecCCCEEEEccCCEeccC
Confidence 3567899999999999999999998443
No 18
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=51.19 E-value=13 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEECCEEEEEeCCCEEEecc
Q 025545 141 VQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Vek 160 (251)
+.++|+.|.+.+||.+.++.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEETTEEEEECTTEEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 67899999999999999983
No 19
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=50.58 E-value=8.2 Score=26.83 Aligned_cols=16 Identities=50% Similarity=0.578 Sum_probs=13.3
Q ss_pred CchhhHHHHHHHhhhh
Q 025545 1 MAHRRCLHVLSRHAAA 16 (251)
Q Consensus 1 ~~~~r~~~~~~~~~~~ 16 (251)
||+||-|..|+||...
T Consensus 1 masrrllasllrqsaq 16 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQ 16 (54)
T ss_dssp -CCSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999998754
No 20
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=50.33 E-value=11 Score=26.31 Aligned_cols=21 Identities=5% Similarity=0.248 Sum_probs=17.7
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 62 ~~~~~~~~~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 62 QIAFRDQNITLQAGEMYVIPK 82 (102)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEEcCCCEEEECC
Confidence 356788999999999999873
No 21
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=50.17 E-value=16 Score=27.27 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.8
Q ss_pred EEEEC-CEEEEEeCCCEEEecc
Q 025545 140 VVQIG-SHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeig-GKQYKV~~GD~I~Vek 160 (251)
.+.++ |..|.+.+||.+.++.
T Consensus 61 ~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 61 EVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEETTCCEEEEETTCEEEECT
T ss_pred EEEECCCCEEEECCCCEEEECC
Confidence 45688 9999999999999873
No 22
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=50.02 E-value=15 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=17.3
Q ss_pred EEECCEEEEEeCCCEEEec
Q 025545 141 VQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Ve 159 (251)
+.++|+.|.+.+||.+.++
T Consensus 57 ~~~~~~~~~l~~Gd~~~i~ 75 (113)
T 2gu9_A 57 AIVDGHTQALQAGSLIAIE 75 (113)
T ss_dssp EEETTEEEEECTTEEEEEC
T ss_pred EEECCEEEEeCCCCEEEEC
Confidence 5678999999999999998
No 23
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=49.62 E-value=15 Score=27.05 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEECCEEEEEeCCCEEEec
Q 025545 139 AVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Ve 159 (251)
+.+.++|+.|.+.+||.+.++
T Consensus 59 ~~~~i~~~~~~l~~Gd~i~i~ 79 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIA 79 (125)
T ss_dssp EEEEETTEEEEEETTEEEEEC
T ss_pred EEEEECCEEEEeCCCCEEEEC
Confidence 457889999999999999998
No 24
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=48.77 E-value=19 Score=28.09 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.0
Q ss_pred EEEEECCEEEEEeCCCEEEecc
Q 025545 139 AVVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Vek 160 (251)
+.+.++|+.|.+.+||.+.++.
T Consensus 86 ~~l~~~g~~~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 86 LHVRHEGETMIAKAGDVMFIPK 107 (133)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 3577899999999999999974
No 25
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=48.32 E-value=20 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.6
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip 85 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVP 85 (116)
T ss_dssp EEEETTEEEEECTTCEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 45678999999999999988
No 26
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=47.86 E-value=22 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.5
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 72 ~~~~~~~~~~l~~Gd~~~ip 91 (115)
T 1yhf_A 72 EITIDQETYRVAEGQTIVMP 91 (115)
T ss_dssp EEEETTEEEEEETTCEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 35688999999999999987
No 27
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=46.09 E-value=21 Score=29.14 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 96 ~l~i~g~~~~l~~GD~i~iP~ 116 (151)
T 4axo_A 96 DIIIDGRKVSASSGELIFIPK 116 (151)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEEcCCCEEEECC
Confidence 356899999999999999973
No 28
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=45.10 E-value=22 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=18.0
Q ss_pred EEECCEEEEEeCCCEEEecc
Q 025545 141 VQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Vek 160 (251)
+.++|+.|.+.+||.+.++.
T Consensus 81 ~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 81 LTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEeCCCCEEEECC
Confidence 57899999999999999984
No 29
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.10 E-value=9.8 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=27.6
Q ss_pred EEEEEEC-CEEEEEeCCCEEEecccCccCCCCeeEece
Q 025545 138 FAVVQIG-SHQFKVSNGDSIFTERLKFCEVNDKLILNK 174 (251)
Q Consensus 138 YAIVeig-GKQYKV~~GD~I~VekL~~~evGd~I~L~k 174 (251)
.|||+++ |..|.|.....|..+.| ++|+.|-|++
T Consensus 51 ~~iVk~s~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 85 (109)
T 2wg5_A 51 RVVVKSSTGPKFVVNTSQYINEEEL---KPGARVALNQ 85 (109)
T ss_dssp CEEEEETTSCEEEECBCTTSCTTTC---CTTCEEEEET
T ss_pred EEEEEeCCCCEEEEEcccccCHHHC---CCCCEEEECC
Confidence 4888888 89999999998877765 4899887754
No 30
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=44.13 E-value=24 Score=28.27 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEECCEEEEEeCCCEEEecc
Q 025545 139 AVVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Vek 160 (251)
+.+.++|+.|.|.+||.+.++.
T Consensus 75 ~~v~v~g~~~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 75 GQCLVGETISDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 3467999999999999999983
No 31
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=43.16 E-value=22 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.6
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 90 ~~~i~~~~~~l~~Gd~i~i~ 109 (133)
T 1o4t_A 90 VFHDNGKDVPIKAGDVCFTD 109 (133)
T ss_dssp EEEETTEEEEEETTEEEEEC
T ss_pred EEEECCEEEEeCCCcEEEEC
Confidence 35789999999999999987
No 32
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=42.80 E-value=24 Score=28.33 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.4
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 88 ~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 88 EVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356999999999999999983
No 33
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=42.76 E-value=12 Score=31.06 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=17.2
Q ss_pred EEECCEEEEEeCCCEEEec
Q 025545 141 VQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Ve 159 (251)
+.++|+.|.|.+||.|.|+
T Consensus 81 v~idge~~~l~~GD~v~IP 99 (157)
T 4h7l_A 81 IELNGQSYPLTKLLAISIP 99 (157)
T ss_dssp EEETTEEEECCTTEEEEEC
T ss_pred EEECCEEEEeCCCCEEEEC
Confidence 3489999999999999998
No 34
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=41.59 E-value=20 Score=25.72 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=17.6
Q ss_pred EEEECC-EEEEEeCCCEEEec
Q 025545 140 VVQIGS-HQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigG-KQYKV~~GD~I~Ve 159 (251)
.+.++| +.|.+.+||.+.++
T Consensus 60 ~~~~~~~~~~~l~~Gd~~~ip 80 (107)
T 2i45_A 60 AVDFADGGSMTIREGEMAVVP 80 (107)
T ss_dssp EEEETTSCEEEECTTEEEEEC
T ss_pred EEEECCCcEEEECCCCEEEEC
Confidence 467888 99999999999988
No 35
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=41.33 E-value=27 Score=28.97 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.3
Q ss_pred EEECCEEEEEeCCCEEEecc
Q 025545 141 VQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Vek 160 (251)
|.++|+.|.+.+||.+.++.
T Consensus 123 vtl~g~~~~L~~Gds~~iP~ 142 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 78999999999999999983
No 36
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=40.88 E-value=30 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.8
Q ss_pred EEEECC-EEEEEeCCCEEEec
Q 025545 140 VVQIGS-HQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigG-KQYKV~~GD~I~Ve 159 (251)
.+.++| +.|.+.+||.+.++
T Consensus 76 ~~~~~~~~~~~l~~Gd~~~ip 96 (134)
T 2o8q_A 76 EFEYEDIGAVMLEAGGSAFQP 96 (134)
T ss_dssp EEEETTTEEEEEETTCEEECC
T ss_pred EEEECCcEEEEecCCCEEEEC
Confidence 367888 99999999999998
No 37
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=40.69 E-value=24 Score=25.77 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=17.8
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 73 ~~~~~~~~~~l~~Gd~~~ip 92 (126)
T 4e2g_A 73 ELTIGEETRVLRPGMAYTIP 92 (126)
T ss_dssp EEEETTEEEEECTTEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 35788999999999999998
No 38
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=39.65 E-value=19 Score=26.15 Aligned_cols=20 Identities=5% Similarity=0.315 Sum_probs=17.8
Q ss_pred EEEECCEEE-EEeCCCEEEec
Q 025545 140 VVQIGSHQF-KVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQY-KV~~GD~I~Ve 159 (251)
.+.++|+.| .+.+||.+.++
T Consensus 59 ~~~i~~~~~~~l~~Gd~i~ip 79 (117)
T 2b8m_A 59 TLTLEDQEPHNYKEGNIVYVP 79 (117)
T ss_dssp EEEETTSCCEEEETTCEEEEC
T ss_pred EEEECCEEEEEeCCCCEEEEC
Confidence 467899999 99999999998
No 39
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=39.13 E-value=20 Score=26.28 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=17.8
Q ss_pred EEEEE-CCEEEEEeCCCEEEec
Q 025545 139 AVVQI-GSHQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVei-gGKQYKV~~GD~I~Ve 159 (251)
+.+.+ +|+.|.+.+||.+.++
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~i~ 92 (125)
T 3h8u_A 71 AEYHQGNGIVTHLKAGDIAIAK 92 (125)
T ss_dssp EEEECSTTCEEEEETTEEEEEC
T ss_pred EEEEECCCeEEEeCCCCEEEEC
Confidence 34567 8999999999999987
No 40
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.64 E-value=30 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=17.7
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 138 ~~~~~~~~~~l~~GD~i~i~ 157 (192)
T 1y9q_A 138 KVFFDEQWHELQQGEHIRFF 157 (192)
T ss_dssp EEEETTEEEEECTTCEEEEE
T ss_pred EEEECCEEEEeCCCCEEEEc
Confidence 35689999999999999998
No 41
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=36.84 E-value=48 Score=28.14 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred EEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCC-cEEEEEEEeecCCceEEEEEecC
Q 025545 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPD-AAVHAVVEEHALDAKVIIFKKKR 216 (251)
Q Consensus 138 YAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~-a~V~AtVleh~rg~KViVfK~KR 216 (251)
.-|+++.+..|.|.....+..-.|....+|+.|.|++-|.++++ +|.=++.| +-=.|+|++..+...-..|.++-
T Consensus 49 LTV~~~~~~~f~vdv~ETl~~T~Lg~l~~G~~VNLEral~~~~r----lgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~~ 124 (186)
T 3ddy_A 49 NTVVRILGDMVYFDIDQALGTTTFDGLKEGDQVNLEIHPKFGEV----VGRGGLTGNIKGTALVAAIEENDAGFSVLIDI 124 (186)
T ss_dssp EEEEEEETTEEEEEECTTTTTSSGGGCCTTCEEEEECCC-------------CBCSCCCEEEEEEEEECCSSEEEEEEEC
T ss_pred EEEEEEcCCEEEEEhHHhhhhCchhhcCCCCEEEECCCCCCCCc----cCCeeEEEEEeEEEEEEEEEECCCeEEEEEEc
Confidence 34566666667766433333334556789999999999999886 45555555 34467777766655555566665
Q ss_pred CCCceeccCccCcc
Q 025545 217 RKNYRRTKGHRQEL 230 (251)
Q Consensus 217 RK~yrRk~GHRQ~y 230 (251)
-+...|..-.+...
T Consensus 125 p~~l~~~i~~KgSI 138 (186)
T 3ddy_A 125 PKGLAENLTVKDDI 138 (186)
T ss_dssp CTTTCSCCCTTCEE
T ss_pred CHHHhhccccCcEE
Confidence 56666554444433
No 42
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=36.41 E-value=34 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=18.3
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 85 ~~~v~g~~~~l~~GD~i~ip 104 (166)
T 3jzv_A 85 HAMVGRAVSAVAPYDLVTIP 104 (166)
T ss_dssp EEEETTEEEEECTTCEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 36799999999999999998
No 43
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=36.29 E-value=33 Score=30.55 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEECCEEEEEeCCCEEEecc
Q 025545 139 AVVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Vek 160 (251)
+++.++|+.|.|++||+|+++-
T Consensus 218 g~y~l~~~~~~V~~GD~i~~~~ 239 (266)
T 4e2q_A 218 GIYRLGDNWYPVQAGDVIWMAP 239 (266)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 6788999999999999999973
No 44
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=35.34 E-value=36 Score=29.22 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.|.+||.+.++
T Consensus 215 ~~~i~~~~~~l~~GD~i~i~ 234 (274)
T 1sef_A 215 MYNLDNEWYPVEKGDYIFMS 234 (274)
T ss_dssp EEEETTEEEEEETTCEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 56799999999999999998
No 45
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=34.45 E-value=28 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.6
Q ss_pred EEE--ECCEEEEEeCCCEEEec
Q 025545 140 VVQ--IGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVe--igGKQYKV~~GD~I~Ve 159 (251)
.+. ++|+.|.+.+||.+.++
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~ip 92 (145)
T 3ht1_A 71 GLVLPDQGRTEEVGPGEAIFIP 92 (145)
T ss_dssp EEEEGGGTEEEEECTTCEEEEC
T ss_pred EEEEeECCEEEEECCCCEEEEC
Confidence 356 88999999999999998
No 46
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=34.28 E-value=22 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.2
Q ss_pred CeEEEEE-ECCEEEEEeCCCEEEecccCccCCCCeeEece
Q 025545 136 PAFAVVQ-IGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 174 (251)
Q Consensus 136 ~mYAIVe-igGKQYKV~~GD~I~VekL~~~evGd~I~L~k 174 (251)
.-.|||+ ..|..|.|.....|..+.| ++|+.|-|++
T Consensus 30 d~~~iVkss~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 66 (85)
T 3h43_A 30 ERKVVVKSSTGPSFLVNVSHFVNPDDL---APGKRVCLNQ 66 (85)
T ss_dssp TTEEEEEETTSSEEEEEBCTTSCGGGC---CTTCEEEECT
T ss_pred CCEEEEEeCCCCeEEEEecCccCHHHC---CCCCEEEECC
Confidence 3468888 5589999999888777665 5899988765
No 47
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=34.16 E-value=33 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.4
Q ss_pred EEEEE-CCEEEEEeCCCEEEecc
Q 025545 139 AVVQI-GSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVei-gGKQYKV~~GD~I~Vek 160 (251)
+.|.+ +|..+.+.+||.+.++.
T Consensus 79 ~~l~~~~g~~~~l~~GD~~~ip~ 101 (123)
T 3bcw_A 79 ARLVDPDGTVHAVKAGDAFIMPE 101 (123)
T ss_dssp EEEECTTCCEEEEETTCEEEECT
T ss_pred EEEEECCCeEEEECCCCEEEECC
Confidence 45667 88999999999999984
No 48
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=33.60 E-value=41 Score=26.67 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.7
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 77 ~~~~~~~~~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 77 VLVDDQGEHPMVPGDCAAFPA 97 (163)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467899999999999999984
No 49
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=33.13 E-value=27 Score=26.00 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=17.3
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.+.+||.+.++
T Consensus 80 ~~~i~~~~~~l~~Gd~i~ip 99 (126)
T 1vj2_A 80 TVLKEQGEETVEEGFYIFVE 99 (126)
T ss_dssp EEECSSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 35678999999999999987
No 50
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=32.17 E-value=9.6 Score=39.89 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=0.0
Q ss_pred cEEEEEEEeec
Q 025545 194 AAVHAVVEEHA 204 (251)
Q Consensus 194 a~V~AtVleh~ 204 (251)
.+|++.|+|-+
T Consensus 850 ~sIe~IIlEWF 860 (956)
T 4aco_A 850 DSIEGIILEWF 860 (956)
T ss_dssp -----------
T ss_pred chHHHHHHHHc
Confidence 36888888865
No 51
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=31.73 E-value=21 Score=25.11 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=16.0
Q ss_pred EEEC-CEEEEEeCCCEEEec
Q 025545 141 VQIG-SHQFKVSNGDSIFTE 159 (251)
Q Consensus 141 Veig-GKQYKV~~GD~I~Ve 159 (251)
+.++ |+.|.+.+||.+.++
T Consensus 68 ~~~~~~~~~~l~~Gd~~~ip 87 (110)
T 2q30_A 68 FVGDGDAVIPAPRGAVLVAP 87 (110)
T ss_dssp EECGGGCEEEECTTEEEEEE
T ss_pred EEeCCCEEEEECCCCEEEeC
Confidence 5667 689999999999887
No 52
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=31.43 E-value=1.1e+02 Score=23.78 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=23.6
Q ss_pred eecCCceEEEE-EecCCCCceeccCccCcceEEEEceEeccc
Q 025545 202 EHALDAKVIIF-KKKRRKNYRRTKGHRQELTKLRIVDIQGIE 242 (251)
Q Consensus 202 eh~rg~KViVf-K~KRRK~yrRk~GHRQ~yTrLRI~eI~~i~ 242 (251)
...||.+|.|- +.+...+|..+.|.+...|.|.+.+|..++
T Consensus 65 ~~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 65 NLEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CCCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred hhcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 33488888876 443334466678999999999999998764
No 53
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=30.75 E-value=32 Score=29.13 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.1
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
.+.++|+.|.|.+||.|.++
T Consensus 212 ~~~i~~~~~~l~~GD~i~~~ 231 (261)
T 1rc6_A 212 VYNLDNNWIPVKKGDYIFMG 231 (261)
T ss_dssp EEESSSCEEEEETTCEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 45788899999999999887
No 54
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=30.63 E-value=41 Score=28.02 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.3
Q ss_pred EEEECCEEEEEeCCCEEEecc
Q 025545 140 VVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Vek 160 (251)
.+.++|+.|.+.+||.+.++.
T Consensus 185 ~~~i~g~~~~l~~Gd~i~ip~ 205 (227)
T 3rns_A 185 KYYVDGKPFIVKKGESAVLPA 205 (227)
T ss_dssp EEEETTEEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467899999999999999983
No 55
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=29.84 E-value=51 Score=27.91 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=18.0
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
++.++|+-|.|++||.+.++
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~ 217 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMG 217 (246)
T ss_dssp EEEETTEEEEEETTCEEEEC
T ss_pred EEEECCEEEEcCCCCEEEEC
Confidence 56789999999999999987
No 56
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=29.25 E-value=48 Score=23.42 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.4
Q ss_pred EEEEECC--EEEEEeCCCEEEec
Q 025545 139 AVVQIGS--HQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigG--KQYKV~~GD~I~Ve 159 (251)
+.+.+++ +.|.+.+||.+.++
T Consensus 50 ~~~~~~~g~~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 50 LLLETPEGSVTSQLTRGVSYTRP 72 (97)
T ss_dssp EEEEETTEEEEEEECTTCCEEEC
T ss_pred EEEEeCCCCEEEEEcCCCEEEeC
Confidence 3567877 78999999999887
No 57
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.50 E-value=15 Score=33.11 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCCeEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEece
Q 025545 134 YEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNK 174 (251)
Q Consensus 134 ~~~mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~k 174 (251)
.....|+|+.+|..|.|..-..|..+.| ++|+.|.||.
T Consensus 108 ~dd~~aiV~s~Gr~~~V~Vsp~Vd~e~L---kPG~rVaLNe 145 (251)
T 3m9b_A 108 HDDDTVDVFTSGRKMRLTCSPNIDAASL---KKGQTVRLNE 145 (251)
T ss_dssp CSSSCEEEECSSSCCEECBCTTSCTTTS---CSSCEEEECT
T ss_pred cCCCEEEEEeCCceEEEEeCCCCCHHHC---CCCCEEEeCC
Confidence 4566899999999999998877666555 5898876644
No 58
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=28.09 E-value=57 Score=25.81 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.8
Q ss_pred EEECC----EEEEEeCCCEEEec
Q 025545 141 VQIGS----HQFKVSNGDSIFTE 159 (251)
Q Consensus 141 VeigG----KQYKV~~GD~I~Ve 159 (251)
+.++| +.|.+.+||.+.++
T Consensus 153 ~~~~~~~~~~~~~l~~GD~~~~~ 175 (198)
T 2bnm_A 153 MKWGDKENPKEALLPTGASMFVE 175 (198)
T ss_dssp EEESCTTSCEEEEECTTCEEEEC
T ss_pred EEECCcCCcccEEECCCCEEEeC
Confidence 56788 99999999999987
No 59
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=28.04 E-value=54 Score=27.50 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.0
Q ss_pred EEEEECCEEEEEeCCCEEEecc
Q 025545 139 AVVQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Vek 160 (251)
+.+.++|+.|.+.+||.+.++.
T Consensus 177 ~~~~i~~~~~~l~~Gd~i~ip~ 198 (243)
T 3h7j_A 177 YDMTVEGCTVEMKFGTAYFCEP 198 (243)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3478999999999999999983
No 60
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=27.63 E-value=24 Score=29.58 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=31.1
Q ss_pred eEEEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEE
Q 025545 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLL 178 (251)
Q Consensus 137 mYAIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlV 178 (251)
-.|=|.++|+.++|...=.|.+..| .+|++|.||.-|.|
T Consensus 20 ~tadV~t~GRkMrv~vsP~vd~~~L---~~Gq~V~LNEal~V 58 (153)
T 2wfw_A 20 KTVDVFTSGRKMRLTCSPNIDTDTL---ALGQTVRLNEALTI 58 (153)
T ss_dssp SCEEEEETTEEEEECBCTTCCGGGC---CTTCEEEECTTCCE
T ss_pred CeEEEEECCcEEEEEeCCCCCHHHC---CCCCEEEECCceEE
Confidence 4588999999999998877766655 58999999776654
No 61
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.93 E-value=46 Score=25.75 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.3
Q ss_pred EEEECCEE-EEEeCCCEEEec
Q 025545 140 VVQIGSHQ-FKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQ-YKV~~GD~I~Ve 159 (251)
.+.++|+. |.+.+||.+.++
T Consensus 80 ~~~~~~~~~~~l~~Gd~i~ip 100 (147)
T 2f4p_A 80 FYQERGKPARILKKGDVVEIP 100 (147)
T ss_dssp EEEETTSCCEEEETTCEEEEC
T ss_pred EEEECCEEEEEECCCCEEEEC
Confidence 35678887 999999999998
No 62
>2jtx_A Transcription initiation factor IIE subunit alpha; TFIIE, TFIIH, activation domains, transcription regulation; NMR {Homo sapiens} PDB: 2rnq_A 2rnr_A
Probab=26.82 E-value=9.1 Score=30.49 Aligned_cols=10 Identities=60% Similarity=0.431 Sum_probs=5.0
Q ss_pred cCHHHHHHHH
Q 025545 104 YTLEEKEAEA 113 (251)
Q Consensus 104 ~t~~e~~~ea 113 (251)
.|++||++=.
T Consensus 85 MTp~EKEaYi 94 (106)
T 2jtx_A 85 MTPEEKEAYI 94 (106)
T ss_dssp SCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 4555654433
No 63
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.08 E-value=56 Score=25.30 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.9
Q ss_pred EEECC---------EEEEEeCCCEEEec
Q 025545 141 VQIGS---------HQFKVSNGDSIFTE 159 (251)
Q Consensus 141 VeigG---------KQYKV~~GD~I~Ve 159 (251)
+.++| +.|.+.+||.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~Gd~i~ip 101 (163)
T 1lr5_A 74 LLMGSSSLKYPGQPQEIPFFQNTTFSIP 101 (163)
T ss_dssp EEECCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred EEECCccccccCccEEEEeCCCCEEEEC
Confidence 56778 99999999999998
No 64
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=25.76 E-value=43 Score=23.67 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=34.5
Q ss_pred EEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEE---ecCCceEecCCccCCcEEE
Q 025545 139 AVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLL---GSQHQTIIGRPMVPDAAVH 197 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlV---gs~~~t~IGkP~L~~a~V~ 197 (251)
..+.++|++|.|.+.|.|.-. . ..|....+--+.-. ++.+..++|.+++.++-|.
T Consensus 16 i~f~~gg~~~~l~~~~yi~~~--~--~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~v 73 (87)
T 1b5f_B 16 VSFTIGGKKFGLTPEQYILKV--G--KGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTV 73 (87)
T ss_dssp EEEEETTEEEEECHHHHEEEE--S--CTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEE
T ss_pred EEEEECCEEEEECHHHhEEEc--c--CCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEE
Confidence 456679999999999987532 1 12233444333322 1345678999999987653
No 65
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=25.44 E-value=24 Score=32.60 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=5.4
Q ss_pred ccCHHHHHH
Q 025545 103 EYTLEEKEA 111 (251)
Q Consensus 103 ~~t~~e~~~ 111 (251)
.++++|+.-
T Consensus 232 ~~s~ee~~l 240 (360)
T 3ay5_A 232 YWSEDDQEL 240 (360)
T ss_dssp SCCHHHHHH
T ss_pred ccCHHHHHH
Confidence 467776543
No 66
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=24.57 E-value=48 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.4
Q ss_pred CeEEEEEECCEEEEEeCCCEE
Q 025545 136 PAFAVVQIGSHQFKVSNGDSI 156 (251)
Q Consensus 136 ~mYAIVeigGKQYKV~~GD~I 156 (251)
.-.|||+.+|+|-.-..||.|
T Consensus 19 ~s~AII~~~g~q~~Y~vGd~i 39 (68)
T 3oss_C 19 RPGAVIEEGGKQQVYLQGERL 39 (68)
T ss_dssp SCEEEEEETTEEEEECTTCBC
T ss_pred CcEEEEecCCcEeEEECCCEe
Confidence 678999999999999999987
No 67
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=23.89 E-value=46 Score=25.53 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.1
Q ss_pred EEECCEE------EEEeCCCEEEec
Q 025545 141 VQIGSHQ------FKVSNGDSIFTE 159 (251)
Q Consensus 141 VeigGKQ------YKV~~GD~I~Ve 159 (251)
+.++|+. |.+.+||.+.++
T Consensus 77 ~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 77 VQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp EEEESBTTBCCEEEEEETTCEEEEC
T ss_pred EEECCccccceeeEEECCCCEEEEC
Confidence 4577877 999999999988
No 68
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=23.86 E-value=66 Score=27.34 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=50.8
Q ss_pred EEEEECCEEEEEeCCCEEEecccCccCCCCeeEeceEEEEecCCceEecCCccCC-cEEEEEEEeecCCceEEEEEecCC
Q 025545 139 AVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPD-AAVHAVVEEHALDAKVIIFKKKRR 217 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~VekL~~~evGd~I~L~kVLlVgs~~~t~IGkP~L~~-a~V~AtVleh~rg~KViVfK~KRR 217 (251)
-|+++.+..|.|.--..+..-.|...++|+.|.|++-|.+|++ +|.=++.| +-=.|+|++......-..|.++-.
T Consensus 50 TV~~v~~~~F~v~ipeTl~~T~Lg~l~~Gd~VNLEral~~g~r----lgGH~v~GHVdg~g~i~~~~~~~~~~~~~~~~p 125 (190)
T 3a35_A 50 TVVRISGDVVYFDIDQAINTTTFRELEVGNKVNLEVRPEFGSL----LGKGALTGNIKGVATVDNITEEEDRLKVYIKIP 125 (190)
T ss_dssp EEEEEETTEEEEEESTTTTTSSGGGCCTTCEEEEECCCSSCCC----CCSSCBCSCCCEEEEEEEEEEETTEEEEEEECC
T ss_pred eEEEEcCCEEEEecHHHHhhcccccCCCCCEEEeCcCCcCCCc----cCCeeEEEEEeEEEEEEEEEEcCCeEEEEEEeC
Confidence 3455555556665222222223455789999999999999876 45455555 334566666555444445555555
Q ss_pred CCceeccCccCc
Q 025545 218 KNYRRTKGHRQE 229 (251)
Q Consensus 218 K~yrRk~GHRQ~ 229 (251)
+...|..-.+..
T Consensus 126 ~~~~~yi~~KGs 137 (190)
T 3a35_A 126 KDLIENILSEDH 137 (190)
T ss_dssp TTSCSCCCTTSE
T ss_pred HHHHhcCCcCCE
Confidence 555555444443
No 69
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=22.88 E-value=75 Score=27.16 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEECCEEEEEeCCCEEEecc
Q 025545 141 VQIGSHQFKVSNGDSIFTER 160 (251)
Q Consensus 141 VeigGKQYKV~~GD~I~Vek 160 (251)
+.++|+.|.+.+||++.++.
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~ 271 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPA 271 (337)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 46899999999999999983
No 70
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.96 E-value=72 Score=26.94 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEeCCCEEEec
Q 025545 139 AVVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 139 AIVeigGKQYKV~~GD~I~Ve 159 (251)
+.+.++|+.|.+.+||.+.++
T Consensus 92 l~~~~~~~~~~L~~Gd~~~~~ 112 (261)
T 1rc6_A 92 ITAKAEGKTFALSEGGYLYCP 112 (261)
T ss_dssp EEEEETTEEEEEETTEEEEEC
T ss_pred EEEEECCEEEEECCCCEEEEC
Confidence 346789999999999999998
No 71
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=21.86 E-value=62 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.8
Q ss_pred EEEECCEEEEEeCCCEEEec
Q 025545 140 VVQIGSHQFKVSNGDSIFTE 159 (251)
Q Consensus 140 IVeigGKQYKV~~GD~I~Ve 159 (251)
-+.++|+.+.+.+||.+.+|
T Consensus 69 ~~~i~~~~~~l~~Gd~~~~p 88 (227)
T 3rns_A 69 EIFIENNKKTISNGDFLEIT 88 (227)
T ss_dssp EEEESSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 34589999999999999998
No 72
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=21.30 E-value=23 Score=26.86 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.9
Q ss_pred EEEEEECCEEEEEe
Q 025545 138 FAVVQIGSHQFKVS 151 (251)
Q Consensus 138 YAIVeigGKQYKV~ 151 (251)
..|+.++||-|...
T Consensus 57 dGi~~ingkDy~F~ 70 (79)
T 1nh2_C 57 DGVVTINRNDYTFQ 70 (79)
T ss_dssp EEEEEETTEEEEEE
T ss_pred eeEEEECCEEEEEe
Confidence 46889999988764
Done!