BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025546
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UDZ|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|3UDZ|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6
Length = 493
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 317 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICKEGRP 372
Query: 189 LE 190
LE
Sbjct: 373 LE 374
>pdb|3UDS|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDS|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDT|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5.
pdb|3UDT|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5
Length = 493
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 317 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICKEGRP 372
Query: 189 LE 190
LE
Sbjct: 373 LE 374
>pdb|4AXE|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp
Length = 456
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 288 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICKEGRP 343
Query: 189 LE 190
LE
Sbjct: 344 LE 345
>pdb|4AXC|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Apo Form
Length = 456
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 288 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICKEGRP 343
Query: 189 LE 190
LE
Sbjct: 344 LE 345
>pdb|2XAL|A Chain A, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAL|B Chain B, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAM|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAM|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAN|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAN|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAO|A Chain A, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAO|B Chain B, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAR|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6.
pdb|2XAR|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6
Length = 451
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 283 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICKEGRP 338
Query: 189 LE 190
LE
Sbjct: 339 LE 340
>pdb|4AQK|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp And Ip6
pdb|4AXF|A Chain A, Insp5 2-K In Complex With Ins(3,4,5,6)p4 Plus Amppnp
Length = 456
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 288 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICREGRP 343
Query: 189 LE 190
LE
Sbjct: 344 LE 345
>pdb|4AXD|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Amppnp
Length = 456
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 129 RRHCFLYLAMAFFISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEART 188
R CFL L G L Q K +I G+ C Y ++ C +C+E R
Sbjct: 288 RTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIH----CYYDIINQPCPICREGRP 343
Query: 189 LE 190
LE
Sbjct: 344 LE 345
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 153 TQMRKKFNILGSDSSMDDCIYHLVCPCCTLC 183
T +RK +LG+ +DDCI + C C +C
Sbjct: 65 TAIRKACKVLGA-YQLDDCILYTSCEPCPMC 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,319,929
Number of Sequences: 62578
Number of extensions: 299030
Number of successful extensions: 529
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 8
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)