Query 025546
Match_columns 251
No_of_seqs 144 out of 703
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 9.6E-31 2.1E-35 207.6 8.0 101 65-191 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 99.9 3.5E-27 7.5E-32 183.8 6.4 102 67-189 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 53.3 7.6 0.00016 32.9 1.4 15 150-164 63-77 (139)
4 PF06570 DUF1129: Protein of u 39.2 28 0.00061 30.4 2.8 18 147-164 189-206 (206)
5 PRK02922 glycogen synthesis pr 35.6 25 0.00053 26.4 1.6 22 25-48 9-31 (67)
6 PF04749 PLAC8: PLAC8 family; 30.1 33 0.00071 26.0 1.6 25 169-193 13-37 (106)
7 PF05824 Pro-MCH: Pro-melanin- 18.2 67 0.0015 24.8 1.2 28 8-35 49-76 (86)
8 PF02677 DUF208: Uncharacteriz 17.0 39 0.00084 29.7 -0.4 31 171-202 1-31 (176)
9 COG2230 Cfa Cyclopropane fatty 15.8 79 0.0017 29.7 1.3 26 4-29 53-80 (283)
10 PF14714 KH_dom-like: KH-domai 15.4 1.2E+02 0.0025 23.0 1.9 20 147-168 56-75 (80)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.97 E-value=9.6e-31 Score=207.65 Aligned_cols=101 Identities=37% Similarity=0.777 Sum_probs=86.0
Q ss_pred cccccccccccCCchhhhhccchhhhhhhHhHHHhCC--cccccchhHHHHHHHhhhhheeeeEeecchhHHHHHHH-HH
Q 025546 65 RMWEGEVLDCFDDRPIALQSACCPCYRFGKNMRRAGF--GYCFVQGSAYFILAIGAIMNFIAFIVTRRHCFLYLAMA-FF 141 (251)
Q Consensus 65 ~~WstGLfdCfdD~~~C~~a~cCPCv~fG~na~Rlg~--gsC~~~~~~y~ll~~~~l~~l~~~svt~~~c~l~~gl~-~~ 141 (251)
++|++||||||+|+++|++++||||+++|+|++|++. ++|...+++|++ ++ ++
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~------------------------~~~~~ 56 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIA------------------------MSALC 56 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH------------------------HHHHH
Confidence 5899999999999999999999999999999999983 466654422221 11 22
Q ss_pred HhhhhhhhHHHHHHHHHcCCCCCCCCccchhhhcCchhHHHHHHHHHHHH
Q 025546 142 ISIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEARTLEM 191 (251)
Q Consensus 142 ~~~~iy~~~~R~~IR~KynI~GS~~~~~Dc~~~~cC~~CaLcQe~RELk~ 191 (251)
++.++|.+.+|++||+||||+|+ .++|+++++||+||++|||+||||+
T Consensus 57 ~~~~~~~~~~R~~~R~ry~i~gs--~~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 57 GFCGCYTCFIRIKLREKYGIQGA--PCDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC--CcccchHHHHhhhHHHHHHHHHHhC
Confidence 35678889999999999999999 9999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.94 E-value=3.5e-27 Score=183.76 Aligned_cols=102 Identities=36% Similarity=0.638 Sum_probs=79.3
Q ss_pred cccccccccCCchhhhhccchhhhhhhHhHHHhCCcccccchhHHHHHHHhhhhheeeeEeecchhHH----HHHHHHHH
Q 025546 67 WEGEVLDCFDDRPIALQSACCPCYRFGKNMRRAGFGYCFVQGSAYFILAIGAIMNFIAFIVTRRHCFL----YLAMAFFI 142 (251)
Q Consensus 67 WstGLfdCfdD~~~C~~a~cCPCv~fG~na~Rlg~gsC~~~~~~y~ll~~~~l~~l~~~svt~~~c~l----~~gl~~~~ 142 (251)
|++||||||+|+++|++++||||+++|+|++|++.++...+.. .+.|.+ +....++.
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~-------------------~~~C~~~~~~~~~~~~~~ 61 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPA-------------------FGSCCLCFCCFGCAACLG 61 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCC-------------------CccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998643221100 000111 11111012
Q ss_pred hhhhhhhHHHHHHHHHcCCCCCCCCccchhhhcCchhHHHHHHHHHH
Q 025546 143 SIGGYLGFLRTQMRKKFNILGSDSSMDDCIYHLVCPCCTLCQEARTL 189 (251)
Q Consensus 143 ~~~iy~~~~R~~IR~KynI~GS~~~~~Dc~~~~cC~~CaLcQe~REL 189 (251)
+.++|++.+|++||+||||+|+ .++||++++||+||||+||+|||
T Consensus 62 l~~~~~~~~R~~iR~ry~I~g~--~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 62 LGWCYGCSLRQQIRERYGIQGS--CCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred HhHhhhhhHHHHHHHHhCCCCC--ChhhhHHHHHHHHHHHHHHHhhC
Confidence 2455789999999999999999 99999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=53.25 E-value=7.6 Score=32.86 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCCC
Q 025546 150 FLRTQMRKKFNILGS 164 (251)
Q Consensus 150 ~~R~~IR~KynI~GS 164 (251)
..|+.||.||||+-+
T Consensus 63 ~mRq~IRdKY~l~k~ 77 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKK 77 (139)
T ss_dssp HHHHHHHHHHT----
T ss_pred HHHHHHHhhcccccc
Confidence 479999999999987
No 4
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.16 E-value=28 Score=30.44 Aligned_cols=18 Identities=44% Similarity=0.514 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHcCCCCC
Q 025546 147 YLGFLRTQMRKKFNILGS 164 (251)
Q Consensus 147 y~~~~R~~IR~KynI~GS 164 (251)
.....|.-+|+||||+|+
T Consensus 189 i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 189 IAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 344678999999999986
No 5
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=35.58 E-value=25 Score=26.36 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=16.8
Q ss_pred eehhhhhhhhHHhh-hcCccccCCC
Q 025546 25 VVNFDVLCSTVALQ-TQGKWRTPEG 48 (251)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~~~~~~~~ 48 (251)
.=+||.|-||||.- +|| +|++.
T Consensus 9 ~~~~DFlAsS~A~Me~Qg--r~Idv 31 (67)
T PRK02922 9 LNNFDFLARSFARMHAEG--RPVDI 31 (67)
T ss_pred ccchhHHHHHHHHHHHcC--CCccH
Confidence 34899999999965 999 45443
No 6
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=30.11 E-value=33 Score=26.02 Aligned_cols=25 Identities=32% Similarity=0.777 Sum_probs=16.2
Q ss_pred cchhhhcCchhHHHHHHHHHHHHcc
Q 025546 169 DDCIYHLVCPCCTLCQEARTLEMNN 193 (251)
Q Consensus 169 ~Dc~~~~cC~~CaLcQe~RELk~r~ 193 (251)
+-|+..+|||++++.|.++.+....
T Consensus 13 ~~c~~~~~cPc~~~~~~~~~l~~~~ 37 (106)
T PF04749_consen 13 GSCCLACFCPCCSFGQNAERLGDGP 37 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455666677777777777666544
No 7
>PF05824 Pro-MCH: Pro-melanin-concentrating hormone (Pro-MCH); InterPro: IPR005456 Melanin-concentrating hormone (MCH) is a cyclic peptide originally identified in teleost fish [,]. In fish, MCH is released from the pituitary and causes lightening of skin pigment cells through pigment aggregation []. In mammals, MCH is predominantly expressed in the hypothalamus, and functions as a neurotransmitter in the control of a range of functions. A major role of MCH is thought to be in the regulation of feeding: injection of MCH into rat brains stimulates feeding; expression of MCH is upregulated in the hypothalamus of obese and fasting mice; and mice lacking MCH are lean and eat less []. MCH and alpha melanocyte-stimulating hormone (alpha-MSH) have antagonistic effects on a number of physiological functions. Alpha-MSH darkens pigmentation in fish and reduces feeding in mammals, whereas MCH increases feeding []. MCH is derived from a pre-pro-hormone (pre-pro-MCH), which contains 1-2 hormones other than MCH, depending on the species. In all species, the 17-19 C-terminal amino acids are cleaved to release MCH. In mammals, amino acids 132-144 encode the hormone neuropeptide EI (NEI), whilst in salmonids, the analogous region encodes neuropeptide EV (NEV), and in other fish, the region determines MCH gene-related peptide (Mgrp) []. A further peptide, known as neuropeptide GE (NGE), is thought to be found in mammalian pre-pro-MCH upstream of NEI, encoded by amino acids 110-129. NEI has been shown to enhance oxytocin and reduce arginine vasopressin secretion from rat pituitary []. Two paralogues of MCH, known as pro-MCH-like 1 and 2 genes (PMCHL1 and PMCHL2), which arose recently in primate evolution, also exist. At present, it is unclear whether the PMCHL genes are functional genes or inactive pseudogenes.; GO: 0030354 melanin-concentrating hormone activity, 0007268 synaptic transmission
Probab=18.20 E-value=67 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=13.8
Q ss_pred HhhhcchhhhhhccCceeehhhhhhhhH
Q 025546 8 QEKAGGEEEESLLEGMAVVNFDVLCSTV 35 (251)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (251)
++++.+.|+.+.-=-+---|||||=.-|
T Consensus 49 e~Re~gdeens~~~~i~rrDfdmlrCM~ 76 (86)
T PF05824_consen 49 EKRETGDEENSAKFPIGRRDFDMLRCML 76 (86)
T ss_pred HHHhccccccCcCCccccchHHHHHHHh
Confidence 3344444444332223334999985433
No 8
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=16.96 E-value=39 Score=29.65 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=20.2
Q ss_pred hhhhcCchhHHHHHHHHHHHHccCCCCCcccc
Q 025546 171 CIYHLVCPCCTLCQEARTLEMNNVQDGTWHGR 202 (251)
Q Consensus 171 c~~~~cC~~CaLcQe~RELk~r~~~~g~w~g~ 202 (251)
.++|.||.||+..= .+.|+..+.+..+|+-|
T Consensus 1 lLLH~CCaPCs~~~-~~~L~~~g~~vt~~fyN 31 (176)
T PF02677_consen 1 LLLHICCAPCSTYP-LERLREEGFDVTGYFYN 31 (176)
T ss_pred CeeeecCccccHHH-HHHHHHCCCCeEEEEeC
Confidence 36899999999653 44555556666554333
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=15.78 E-value=79 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.6
Q ss_pred hHHHHhhhcch--hhhhhccCceeehhh
Q 025546 4 TDRQQEKAGGE--EEESLLEGMAVVNFD 29 (251)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~~~ 29 (251)
||.-|....+. ++-+|-.||.||||=
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiG 80 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIG 80 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 55555554444 788999999999973
No 10
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=15.43 E-value=1.2e+02 Score=22.95 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHcCCCCCCCCc
Q 025546 147 YLGFLRTQMRKKFNILGSDSSM 168 (251)
Q Consensus 147 y~~~~R~~IR~KynI~GS~~~~ 168 (251)
|.=+...+||+.||+.|+ ++
T Consensus 56 Y~ryL~n~lRe~f~f~G~--Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGV--PI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS----
T ss_pred HHHHHHHHHHHHCCCCce--eE
Done!