Query 025546
Match_columns 251
No_of_seqs 144 out of 703
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 65.8 2.6 8.8E-05 28.6 1.5 12 150-161 38-49 (49)
2 3rk3_E Complexin-1; snare prot 63.6 3.1 0.00011 29.5 1.7 15 150-164 41-55 (63)
3 1l4a_E Synaphin A; snare, snar 59.9 3.8 0.00013 30.2 1.7 15 150-164 45-59 (79)
4 1zbd_B Rabphilin-3A; G protein 12.1 49 0.0017 26.3 0.2 20 179-201 100-119 (134)
5 2l92_A Histone family protein 9.0 74 0.0025 21.6 0.1 17 189-205 5-22 (50)
6 1rrz_A Glycogen synthesis prot 8.5 1.3E+02 0.0044 22.6 1.2 17 25-41 28-45 (86)
7 4egd_A Uncharacterized protein 7.9 1.4E+02 0.0048 26.4 1.4 14 151-164 193-206 (260)
8 1mli_A Muconolactone isomerase 6.7 1.3E+02 0.0044 22.8 0.6 15 34-48 31-45 (96)
9 2zet_C Melanophilin; complex, 6.2 1.9E+02 0.0064 23.4 1.3 21 179-202 110-130 (153)
10 1wpn_A Manganese-dependent ino 5.9 1.9E+02 0.0063 23.1 1.1 13 26-38 12-24 (188)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.79 E-value=2.6 Score=28.59 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCC
Q 025546 150 FLRTQMRKKFNI 161 (251)
Q Consensus 150 ~~R~~IR~KynI 161 (251)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 379999999997
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=63.61 E-value=3.1 Score=29.48 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCCC
Q 025546 150 FLRTQMRKKFNILGS 164 (251)
Q Consensus 150 ~~R~~IR~KynI~GS 164 (251)
.+|+.||.||||+--
T Consensus 41 ~mRQ~IRdKY~ikKk 55 (63)
T 3rk3_E 41 AVRQGIRDKYGIKKK 55 (63)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHhccchh
Confidence 479999999999843
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=59.91 E-value=3.8 Score=30.23 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCCC
Q 025546 150 FLRTQMRKKFNILGS 164 (251)
Q Consensus 150 ~~R~~IR~KynI~GS 164 (251)
.+|+.||.||||+--
T Consensus 45 ~mRq~IRdKY~ikKK 59 (79)
T 1l4a_E 45 EMRQTIRDKYGLKKK 59 (79)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHhccccc
Confidence 479999999999854
No 4
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=12.13 E-value=49 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHccCCCCCccc
Q 025546 179 CCTLCQEARTLEMNNVQDGTWHG 201 (251)
Q Consensus 179 ~CaLcQe~RELk~r~~~~g~w~g 201 (251)
-|.+||..|||+. ..|.|+-
T Consensus 100 ~C~vC~k~rel~~---kSG~Wf~ 119 (134)
T 1zbd_B 100 LCKICLEQREVWK---RSGAWFF 119 (134)
T ss_dssp EEHHHHHHHHHHH---HTSHHHH
T ss_pred echhhHHHHHHHH---hhhHHHH
Confidence 5789999999984 5677743
No 5
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=9.05 E-value=74 Score=21.55 Aligned_cols=17 Identities=35% Similarity=0.782 Sum_probs=12.2
Q ss_pred HHHccCCCC-CccccCce
Q 025546 189 LEMNNVQDG-TWHGRGDT 205 (251)
Q Consensus 189 Lk~r~~~~g-~w~g~~dt 205 (251)
.|+|...+| +|.|+|.+
T Consensus 5 aKYR~p~~G~TWsGRGR~ 22 (50)
T 2l92_A 5 PKYRDPATGKTWSGRGRQ 22 (50)
T ss_dssp CCEECTTTCCEECSCSSC
T ss_pred CeeccCCCCCeecCCCCC
Confidence 356676667 79999854
No 6
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=8.47 E-value=1.3e+02 Score=22.57 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.2
Q ss_pred eehhhhhhhhHHhh-hcC
Q 025546 25 VVNFDVLCSTVALQ-TQG 41 (251)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~ 41 (251)
.=+||.+-||||.. .+|
T Consensus 28 ~~nvDF~ASSvAfmEr~n 45 (86)
T 1rrz_A 28 LNNFDFLARSFARMHAEG 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHHHHcC
Confidence 34899999999987 777
No 7
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=7.93 E-value=1.4e+02 Score=26.43 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCCC
Q 025546 151 LRTQMRKKFNILGS 164 (251)
Q Consensus 151 ~R~~IR~KynI~GS 164 (251)
.=.++|+||+|+-.
T Consensus 193 NVKQLRkrY~IpT~ 206 (260)
T 4egd_A 193 NVQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred hHHHHHHhcCCCCC
Confidence 45699999999866
No 8
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=6.68 E-value=1.3e+02 Score=22.84 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.5
Q ss_pred hHHhhhcCccccCCC
Q 025546 34 TVALQTQGKWRTPEG 48 (251)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (251)
+-.||.+|||+.|-.
T Consensus 31 a~eLq~~G~~~~lWR 45 (96)
T 1mli_A 31 AQRLQREGTWRHLWR 45 (96)
T ss_pred HHHHHhCCeeEEEEE
Confidence 456899999877655
No 9
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=6.18 E-value=1.9e+02 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHccCCCCCcccc
Q 025546 179 CCTLCQEARTLEMNNVQDGTWHGR 202 (251)
Q Consensus 179 ~CaLcQe~RELk~r~~~~g~w~g~ 202 (251)
-|.+||+.|||+. ..|.|+-.
T Consensus 110 ~C~vC~k~rel~~---kSGeWf~~ 130 (153)
T 2zet_C 110 LCDPCHLARVVKI---GSLEWYYQ 130 (153)
T ss_dssp EEHHHHHHHHHHH---HHCHHHHH
T ss_pred eeHHHHHHHHHHH---hccHHHHH
Confidence 5789999999984 45667543
No 10
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=5.92 E-value=1.9e+02 Score=23.06 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=11.8
Q ss_pred ehhhhhhhhHHhh
Q 025546 26 VNFDVLCSTVALQ 38 (251)
Q Consensus 26 ~~~~~~~~~~~~~ 38 (251)
-|+|-+.|++||.
T Consensus 12 pD~DaigSa~al~ 24 (188)
T 1wpn_A 12 PDTDTICSAIAYA 24 (188)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4999999999986
Done!