Query 025547
Match_columns 251
No_of_seqs 205 out of 886
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01310 L7 60S ribosomal pro 100.0 1.6E-84 3.4E-89 577.2 24.1 233 15-251 1-235 (235)
2 KOG3184 60S ribosomal protein 100.0 1.5E-66 3.3E-71 461.9 16.7 234 13-251 1-235 (235)
3 cd01657 Ribosomal_L7_archeal_e 100.0 5.2E-63 1.1E-67 418.0 16.1 159 92-251 1-159 (159)
4 PRK06049 rpl30p 50S ribosomal 100.0 3.5E-61 7.6E-66 404.5 16.3 154 91-251 1-154 (154)
5 TIGR01309 L30P_arch 50S riboso 100.0 2.6E-59 5.7E-64 392.3 15.2 151 93-251 1-152 (152)
6 COG1841 RpmD Ribosomal protein 99.8 2.7E-19 5.8E-24 126.5 6.0 55 93-147 1-55 (55)
7 cd00355 Ribosomal_L30_like Rib 99.7 3.7E-18 8E-23 119.8 6.5 53 94-146 1-53 (53)
8 PF00327 Ribosomal_L30: Riboso 99.7 7.9E-17 1.7E-21 112.5 7.1 52 92-143 1-52 (52)
9 PF08079 Ribosomal_L30_N: Ribo 99.7 3.2E-17 7E-22 121.6 3.1 71 16-90 1-71 (71)
10 PRK05611 rpmD 50S ribosomal pr 99.7 2.1E-16 4.6E-21 113.4 6.9 55 93-147 4-58 (59)
11 TIGR01308 rpmD_bact ribosomal 99.6 1.5E-15 3.3E-20 107.5 6.5 54 94-147 2-55 (55)
12 cd01658 Ribosomal_L30 Ribosoma 99.6 3.3E-15 7.2E-20 105.4 6.2 54 93-146 1-54 (54)
13 KOG4799 Mitochondrial ribosoma 97.2 0.00095 2.1E-08 56.8 6.5 74 87-160 53-135 (182)
14 PF00571 CBS: CBS domain CBS d 32.7 69 0.0015 20.9 3.4 47 141-198 9-56 (57)
15 TIGR03757 conj_TIGR03757 integ 25.6 1E+02 0.0023 24.9 3.8 33 113-158 78-110 (113)
16 KOG1097 Adenine deaminase/aden 25.6 1.2E+02 0.0026 29.8 4.8 53 97-149 245-298 (399)
17 PF01849 NAC: NAC domain; Int 23.7 10 0.00022 26.6 -2.2 44 106-150 2-56 (58)
18 PF11372 DUF3173: Domain of un 23.6 76 0.0016 22.9 2.3 30 154-183 27-56 (59)
19 COG4597 BatB ABC-type amino ac 21.3 66 0.0014 30.7 2.1 53 100-152 288-351 (397)
20 cd01321 ADGF Adenosine deamina 20.0 1.5E+02 0.0034 27.9 4.4 33 105-138 212-244 (345)
No 1
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=100.00 E-value=1.6e-84 Score=577.24 Aligned_cols=233 Identities=54% Similarity=0.897 Sum_probs=227.3
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhcccCccccccccchhhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCceEE
Q 025547 15 ETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLF 94 (251)
Q Consensus 15 E~llkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~~rae~~v~~yr~~erd~~r~kr~a~~~~~~~~~~e~kl~~ 94 (251)
|++|||||++++++.++++++.+.+ ++++.+++.+|+|||+|+++|+++++|.+|++|+++++|++|+|+|++|+|
T Consensus 1 e~llkkrk~~~~~~~~~~~~~~~~k----~~~~~~k~~~fkr~e~~~~~y~~~e~d~~r~~r~~k~~~~~~~~~e~kl~f 76 (235)
T TIGR01310 1 ELLLKKRKARQELAVVRAKQAKAKK----KRNKKKKKHYFKRAESFVHEYRKAERERIRLKRLAKKPGKFYVPAEHKLLF 76 (235)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCeEEE
Confidence 7899999999999999999888877 677788899999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecCCC
Q 025547 95 IIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTD 174 (251)
Q Consensus 95 ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i~ltd 174 (251)
||||||++++||++++||++|||+++|+||||++|+++.+||++|+|||||||||++||++||||||+++++++++||||
T Consensus 77 VIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~~v~Ltd 156 (235)
T TIGR01310 77 VIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTD 156 (235)
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCCeeeCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcC--CcccccccCCCCCCChHHHHHHHHhhC
Q 025547 175 NNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLL--GKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 175 n~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
|+|||++||++||+|+|||||||+++|+||+++++|||||+||||+|||+ +++++|.+||++||||++||+||++|+
T Consensus 157 n~iiE~~lg~~gi~ciEDliheI~t~g~~fk~i~~~L~PFrL~~Pr~G~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~ 235 (235)
T TIGR01310 157 NTIIEQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGFGKRKKVKHFKEGGDFGNREDAINELIRKMN 235 (235)
T ss_pred hHHHHHhhccCCcccHHHHHHHHHhCCCCHHHHhcCccCccCCCCcccccccCcccCcccCCCCCccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999997 488999999999999999999999997
No 2
>KOG3184 consensus 60S ribosomal protein L7 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-66 Score=461.89 Aligned_cols=234 Identities=45% Similarity=0.782 Sum_probs=229.4
Q ss_pred chhHHHHhhhhHHHHHHHHHHHHHhcccCccccccccchhhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCCce
Q 025547 13 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKL 92 (251)
Q Consensus 13 vpE~llkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~~rae~~v~~yr~~erd~~r~kr~a~~~~~~~~~~e~kl 92 (251)
+||++|| ||+++++++++++++.+.+ ..++.++...++++++|+++|++++++.++++|.+++++++|+|+++++
T Consensus 1 vPE~llk-rk~~~~~~~~~~~~~~~~k----~~~k~~~~~~~~~~e~~~~~~~~~~r~~i~~~r~~~~~~~~~~~~e~~l 75 (235)
T KOG3184|consen 1 VPENLLK-RKAQAELATQALRKLLAKK----EIRKKKRKLFLKKAKHYHKEYRQKYRTEIRMARIARKAGNFYVPAEPKL 75 (235)
T ss_pred Cchhhhh-hhhHHHHHHHHHHHHHHHH----HHHhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHhccccCcCcccccc
Confidence 6999999 9999999999999999998 7778889999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhccc-ccCCceec
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYA-TVDRQRIP 171 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~-k~~~~~i~ 171 (251)
+||||++|+++++|+++++|++|+|.+||+||||+.|+++..||++|+||||||+||+++|++||||||++ ++++++|+
T Consensus 76 ~fvvri~gin~v~pk~~k~l~lLrL~~If~g~fVKlnk~~~~mLriVepYVa~G~pnlksv~elI~krG~~k~~~~k~i~ 155 (235)
T KOG3184|consen 76 AFVIRIRGVNGVEPKSRKVLQLLRLKQIFNGTFVKLNKATVNMLRIVEPYIAWGYPNLKSVSELIYKRGYGKKIEKKRIP 155 (235)
T ss_pred ceeeecccccccCchHHHHHHHHHhhccccceeEEechhhhhhHhhcccceeeccCcHHHHHHHHhhcccccccCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 49999999
Q ss_pred CCChhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025547 172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 172 ltdn~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
||||.++++++|++|++|+||++|+|+++|++|+++++|||||+|++|.+||..+..||.|||++||||+.||+|+++|+
T Consensus 156 ltdn~ii~~~lgk~~~i~~edl~hei~~vg~~fk~~n~fL~pf~l~~~~~~~~~k~~h~~e~g~~g~~~~~in~L~~~~~ 235 (235)
T KOG3184|consen 156 LTDNFLIERKLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPVAGHKTKFGHFKEGGTAGNRGEHINDLIRQLN 235 (235)
T ss_pred cccchHHHHhcCCcceeechhhhccccccchhHHHHhhccCceeccCcccchhhhccccccCCCCCchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999996
No 3
>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.
Probab=100.00 E-value=5.2e-63 Score=418.04 Aligned_cols=159 Identities=55% Similarity=0.905 Sum_probs=156.9
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceec
Q 025547 92 LLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIP 171 (251)
Q Consensus 92 l~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i~ 171 (251)
++||+|+||.+|+||++++||++|||+++|+|||+++||+++|||++|+|||+||+||++||++||+|||+++++++++|
T Consensus 1 l~~Virirg~~g~~~~~r~tL~~LgL~k~~~~v~~~~t~~~~gmL~kV~~~V~~ge~~~~tv~~Li~kRG~~~~~~~~~~ 80 (159)
T cd01657 1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQRIP 80 (159)
T ss_pred CEEEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhhhheEeccCcHHHHHHHHHHhCeecCCCeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcCCcccccccCCCCCCChHHHHHHHHhhC
Q 025547 172 LTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 172 ltdn~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
||||+++|++| ++||+|+|||||||+++|++|+++++|+|||+||||++||++++++|++||++||||++||+||++|+
T Consensus 81 ltdn~iie~~l-~~gi~ciedlv~~i~~~~~~f~~~~~~l~pF~L~~P~~g~~~~~~~~~~gG~~G~r~~~In~Li~~m~ 159 (159)
T cd01657 81 LTDNYLVEKTL-KKGIICIEDLAHEIYTGGPNFKEVNNFLPPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159 (159)
T ss_pred CChHHHHHHHc-ccCcccHHHHHHHHHhCccCHHHhhccCCCeECCCcccchhccccccccCCCCCccHHHHHHHHHHhC
Confidence 99999999999 99999999999999999999999999999999999999999888999999999999999999999997
No 4
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=100.00 E-value=3.5e-61 Score=404.47 Aligned_cols=154 Identities=33% Similarity=0.528 Sum_probs=147.3
Q ss_pred ceEEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCcee
Q 025547 91 KLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRI 170 (251)
Q Consensus 91 kl~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i 170 (251)
.++||+|+||.+|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++ .| ++
T Consensus 1 ~~~~ViriRg~ig~~~~~r~tL~~LgL~ki~~~V~v~~tp~~~GML~kV~~~V~~ge~~~~tv~~Li~kRG~~-~g-~~- 77 (154)
T PRK06049 1 EMYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGRL-EG-NK- 77 (154)
T ss_pred CcEEEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhhceeEEeeCchHHHHHHHHHhCcc-cC-CC-
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999994 44 44
Q ss_pred cCCChhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcCCcccccccCCCCCCChHHHHHHHHhh
Q 025547 171 PLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 250 (251)
Q Consensus 171 ~ltdn~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~Li~rM 250 (251)
|||||+|+| + +||+|+|||||||+++|++|+++++|+|||+||||+|||++++++|.+||++||||++||+||++|
T Consensus 78 ~ltd~~i~e-~---~g~~~iedl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~~k~~~~~gG~~G~r~~~In~Li~rM 153 (154)
T PRK06049 78 KLTDEYVKE-N---TGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRM 153 (154)
T ss_pred CCCHHHHHH-h---cCCccHHHHHHHHHhCCCCHHHhhcccCceecCCcchhhhhcccccccCCCCCccHHHHHHHHHHh
Confidence 999999977 3 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 025547 251 N 251 (251)
Q Consensus 251 ~ 251 (251)
+
T Consensus 154 ~ 154 (154)
T PRK06049 154 R 154 (154)
T ss_pred C
Confidence 6
No 5
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=100.00 E-value=2.6e-59 Score=392.34 Aligned_cols=151 Identities=32% Similarity=0.491 Sum_probs=143.9
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHHHhcccccCCceecC
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPL 172 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i~l 172 (251)
++|+||||.+|++|++++||++|||+++|+|||+++||+++|||++|+|||+|||||++||++||||||++. |+ .||
T Consensus 1 ~~ViriRg~ig~~~~~r~tL~~LrL~ri~~~V~v~~tp~~~gML~kV~~yV~~ge~~~~tv~~Li~kRG~~~-g~--~~l 77 (152)
T TIGR01309 1 LAVIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLELLIRKRGRLV-GG--DKV 77 (152)
T ss_pred CeEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhHhheeEecCCHHHHHHHHHHhcccc-CC--CcC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974 55 399
Q ss_pred CChhhHhhhcccCCcccHHHHHHHHHhcCCChhhhhcccCcccCCCCCCCcC-CcccccccCCCCCCChHHHHHHHHhhC
Q 025547 173 TDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLL-GKKQPFKDGGEAGNREEEINELISKMN 251 (251)
Q Consensus 173 tdn~iiee~lg~~gi~ciEDlv~eI~~~g~~f~~v~~fl~pF~L~~P~~G~~-~~k~~~~~gG~~G~r~~~In~Li~rM~ 251 (251)
|||+ ||++| ||+|+|||||||+++|++|++++ |+|||+||||++||+ +++++|.+||++||||++||+||++|+
T Consensus 78 td~~-i~e~~---g~~~iedl~~~i~~~~~~f~~~~-~~~~FrL~pPr~G~~~~~k~~~~~gG~~G~r~~~In~Li~rMi 152 (152)
T TIGR01309 78 TDEY-VKEVT---GYESVDELAKALVEGEIKLSEAG-LKPVFRLHPPRKGFKGGIKTPYRDGGELGYRGEKINELLRRMR 152 (152)
T ss_pred CHHH-HHHHc---CCccHHHHHHHHHcCCCCccccC-ccCceeCCCCCcccccccccccccCCCCcccHHHHHHHHHHhC
Confidence 9985 58777 79999999999999999999997 999999999999998 789999999999999999999999996
No 6
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.7e-19 Score=126.54 Aligned_cols=55 Identities=33% Similarity=0.363 Sum_probs=53.7
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEec
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
++|+|+||.+|+||++++||++|||+++|++|++++||+++|||++|+|||+||+
T Consensus 1 ~~V~~iRs~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~kV~~lV~v~e 55 (55)
T COG1841 1 LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLVTVGE 55 (55)
T ss_pred CeEEEEeccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHHHHHhheEecC
Confidence 4799999999999999999999999999999999999999999999999999996
No 7
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=99.74 E-value=3.7e-18 Score=119.76 Aligned_cols=53 Identities=34% Similarity=0.481 Sum_probs=52.1
Q ss_pred EEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEe
Q 025547 94 FIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 146 (251)
Q Consensus 94 ~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G 146 (251)
+|+|+||.+|.+|++++||++|||+++|++||+++||+++|||++|+|||+||
T Consensus 1 ~V~~irs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~gml~kV~~lV~~~ 53 (53)
T cd00355 1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTVG 53 (53)
T ss_pred CEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhccceEEEC
Confidence 58999999999999999999999999999999999999999999999999997
No 8
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....
Probab=99.69 E-value=7.9e-17 Score=112.54 Aligned_cols=52 Identities=38% Similarity=0.587 Sum_probs=49.0
Q ss_pred eEEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeE
Q 025547 92 LLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYV 143 (251)
Q Consensus 92 l~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV 143 (251)
++||+||||.+|.+|++++||++|||+++|++||+++||+++|||++|+|||
T Consensus 1 ~l~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~gml~kV~~lV 52 (52)
T PF00327_consen 1 LLFVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRGMLKKVKHLV 52 (52)
T ss_dssp EEEEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHHHHHHTGCGE
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999999999999998
No 9
>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.
Probab=99.66 E-value=3.2e-17 Score=121.65 Aligned_cols=71 Identities=35% Similarity=0.526 Sum_probs=62.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhcccCccccccccchhhhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCCC
Q 025547 16 TVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKS 90 (251)
Q Consensus 16 ~llkkrk~~~~~~~~~~~~~~~~k~~~~~~~k~~rk~~~~rae~~v~~yr~~erd~~r~kr~a~~~~~~~~~~e~ 90 (251)
||||||++++++++.++++....+ ...+.+++.+|+|||+|++||+++|+|.++++|+|++.|+||||+||
T Consensus 1 s~LKKrK~~~~~~~~~~~~~~~~k----~~~~~~r~~~~kRAekY~kEYr~~erd~Irl~R~Ak~~G~fyvpaEp 71 (71)
T PF08079_consen 1 SLLKKRKRNEKLKAKRAKKAAARK----KKRKKKRKEIFKRAEKYVKEYRQKERDEIRLKREAKKAGNFYVPAEP 71 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-SEE----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccCccCCCCC
Confidence 579999999999999999988888 77788999999999999999999999999999999999999999997
No 10
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=99.66 E-value=2.1e-16 Score=113.38 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=54.1
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEec
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
++|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||+|.+
T Consensus 4 ~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV~vee 58 (59)
T PRK05611 4 LKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEE 58 (59)
T ss_pred EEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhEEEEe
Confidence 8999999999999999999999999999999999999999999999999999986
No 11
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=99.61 E-value=1.5e-15 Score=107.49 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=52.3
Q ss_pred EEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEec
Q 025547 94 FIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGY 147 (251)
Q Consensus 94 ~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~ 147 (251)
.|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||.+.+
T Consensus 2 kItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV~vee 55 (55)
T TIGR01308 2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLVKVEE 55 (55)
T ss_pred EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheEEEeC
Confidence 589999999999999999999999999999999999999999999999999875
No 12
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=99.58 E-value=3.3e-15 Score=105.36 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEEEeecCCCCCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEe
Q 025547 93 LFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 146 (251)
Q Consensus 93 ~~ViRirg~~~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G 146 (251)
+.|+++||.+|.+|++++||++|||+++|++|++++||+++|||++|+|||.|.
T Consensus 1 ~~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV~ve 54 (54)
T cd01658 1 LKITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKVE 54 (54)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheEEeC
Confidence 368999999999999999999999999999999999999999999999999873
No 13
>KOG4799 consensus Mitochondrial ribosomal protein L30 [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00095 Score=56.80 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCC-CceEEEEeecCCCCCCHHHHHHHHHhCCCCcCc-EEEEeCChhhHHHHHhccCeEE-------EecCChHHHHHHH
Q 025547 87 KPK-SKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFS-GVFVRANDGMLEVLQKVEPYVT-------YGYPNLANVKELI 157 (251)
Q Consensus 87 ~~e-~kl~~ViRirg~~~~~~~~~k~L~~LrL~ki~~-~Vfv~~n~~~~~mL~~V~pyV~-------~G~p~~~tv~~Li 157 (251)
|.+ ++|..|.||++..+.|...++++++|||....+ -.++++.|++-.-|.+|+|+|. +|+|..+.|+..+
T Consensus 53 P~~p~KL~~v~rik~t~~~PyWek~iik~lGld~k~t~~qV~kNip~vNakLwkIKHLI~~~pv~fp~gePte~di~~t~ 132 (182)
T KOG4799|consen 53 PQNPHKLHIVTRIKSTRRRPYWEKDIIKMLGLDKKHTRPQVHKNIPSVNAKLWKIKHLIRLRPVEFPGGEPTEDDISSTS 132 (182)
T ss_pred CCCccceEEEEEeccccCCcchHHHHHHHhCcccccCCceEeecccchhhHHHHhhheeEEEeeccCCCCCchhhhhhhh
Confidence 444 589999999999999999999999999999988 7788999999999999999986 5899999999888
Q ss_pred HHh
Q 025547 158 YKK 160 (251)
Q Consensus 158 ~KR 160 (251)
.|.
T Consensus 133 Lk~ 135 (182)
T KOG4799|consen 133 LKP 135 (182)
T ss_pred hcc
Confidence 764
No 14
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=32.66 E-value=69 Score=20.91 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=31.8
Q ss_pred CeEEEecCChHHHHHHHHHhcccccCCceecCCChhhHhhhcccC-CcccHHHHHHHHH
Q 025547 141 PYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKY-GIICIEDIVHEIA 198 (251)
Q Consensus 141 pyV~~G~p~~~tv~~Li~KRG~~k~~~~~i~ltdn~iiee~lg~~-gi~ciEDlv~eI~ 198 (251)
+.+.-..-++..+-+++.+.+. ..+|+.|+. |++ |+++..||++.+.
T Consensus 9 ~~~v~~~~~l~~~~~~~~~~~~-----~~~~V~d~~------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 9 PITVSPDDSLEEALEIMRKNGI-----SRLPVVDED------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SEEEETTSBHHHHHHHHHHHTS-----SEEEEESTT------SBEEEEEEHHHHHHHHH
T ss_pred CEEEcCcCcHHHHHHHHHHcCC-----cEEEEEecC------CEEEEEEEHHHHHhhhh
Confidence 3334445566777777777774 346777643 344 9999999999875
No 15
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.63 E-value=1e+02 Score=24.93 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.3
Q ss_pred HHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCChHHHHHHHH
Q 025547 113 YNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIY 158 (251)
Q Consensus 113 ~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~~tv~~Li~ 158 (251)
..||++++=--||= ..||.||++|..--..++.
T Consensus 78 w~lGi~k~PAVV~D-------------~~~VVYG~~DV~~A~~~~~ 110 (113)
T TIGR03757 78 WQLGVTKIPAVVVD-------------RRYVVYGETDVARALALIQ 110 (113)
T ss_pred HHcCCccCCEEEEc-------------CCeEEecCccHHHHHHHHH
Confidence 36888887666653 5699999999988777664
No 16
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=25.59 E-value=1.2e+02 Score=29.79 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=43.5
Q ss_pred eecCCC-CCCHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHhccCeEEEecCC
Q 025547 97 RIQGTS-DMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPN 149 (251)
Q Consensus 97 Rirg~~-~~~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~V~pyV~~G~p~ 149 (251)
-+-|-. +-+..++..|.+||..+|+||.++...|..+++++.-.=.++..-.|
T Consensus 245 ~HaGE~~~~~~~v~~~LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~S 298 (399)
T KOG1097|consen 245 FHAGETNGGASVVKNALDLLGTERIGHGYFLTKDPELINLLKSRNIALEICPIS 298 (399)
T ss_pred EEccccCCChHHHHHHHHhhCCccccCceeccCCHHHHHHHHhcCceEEEccch
Confidence 345655 68889999999999999999999999999999998876666655443
No 17
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=23.72 E-value=10 Score=26.63 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCcC-----------cEEEEeCChhhHHHHHhccCeEEEecCCh
Q 025547 106 PKTKKILYNLRLRRIF-----------SGVFVRANDGMLEVLQKVEPYVTYGYPNL 150 (251)
Q Consensus 106 ~~~~k~L~~LrL~ki~-----------~~Vfv~~n~~~~~mL~~V~pyV~~G~p~~ 150 (251)
.+.++.|+.|||..+. ..+|+-++|.+.. ..--..|+..|+|..
T Consensus 2 kk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~-~~~~~tyvV~G~~~~ 56 (58)
T PF01849_consen 2 KKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQK-SPGSNTYVVFGEAEE 56 (58)
T ss_dssp ------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEE-ETTCCEEEEESEEEE
T ss_pred HHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEE-cCCCCEEEEEeeeEE
Confidence 4677888888887773 2567777888772 222578888888753
No 18
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.60 E-value=76 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=24.1
Q ss_pred HHHHHHhcccccCCceecCCChhhHhhhcc
Q 025547 154 KELIYKKGYATVDRQRIPLTDNNIIEQTLG 183 (251)
Q Consensus 154 ~~Li~KRG~~k~~~~~i~ltdn~iiee~lg 183 (251)
++++-++|+-..+++|+-.-.-.+||+.||
T Consensus 27 K~~lV~~G~~~Y~nkRlg~VP~~~VEeiLG 56 (59)
T PF11372_consen 27 KALLVQKGFSFYNNKRLGRVPASAVEEILG 56 (59)
T ss_pred HHHHHHcCCCcccCCccCcccHHHHHHHHC
Confidence 467778999989998877777778888875
No 19
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=21.32 E-value=66 Score=30.74 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHhCCCCcCcEEE-----------EeCChhhHHHHHhccCeEEEecCChHH
Q 025547 100 GTSDMHPKTKKILYNLRLRRIFSGVF-----------VRANDGMLEVLQKVEPYVTYGYPNLAN 152 (251)
Q Consensus 100 g~~~~~~~~~k~L~~LrL~ki~~~Vf-----------v~~n~~~~~mL~~V~pyV~~G~p~~~t 152 (251)
|+.++|.-+-..-..|||+.--+... =+.|.+++++.+.-+--++.||||+-.
T Consensus 288 GI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLTSQYLNLtKNSSLAiAIGYpDlv~ 351 (397)
T COG4597 288 GIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTSQYLNLTKNSSLAIAIGYPDLVA 351 (397)
T ss_pred hhcccCcccHHHHHhcCCCCcceEEEEEecccceeecCcccHHHHhhcccchhhhhcCCCceEE
Confidence 57788999999999999986554432 357788888888888889999999863
No 20
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=20.02 E-value=1.5e+02 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.7
Q ss_pred CHHHHHHHHHhCCCCcCcEEEEeCChhhHHHHHh
Q 025547 105 HPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQK 138 (251)
Q Consensus 105 ~~~~~k~L~~LrL~ki~~~Vfv~~n~~~~~mL~~ 138 (251)
+..+.++| .||-.+|+||+.+..+|..+.+|+.
T Consensus 212 ~~~v~~al-~lg~~RIGHG~~~~~dp~ll~~l~~ 244 (345)
T cd01321 212 DENLVDAL-LLNTKRIGHGFALPKHPLLMDLVKK 244 (345)
T ss_pred hhHHHHHH-HhCCCcCccccccCcCHHHHHHHHH
Confidence 45788899 7999999999999999988887764
Done!